Multiple sequence alignment - TraesCS2D01G405000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G405000 chr2D 100.000 4850 0 0 1 4850 520037371 520042220 0.000000e+00 8957.0
1 TraesCS2D01G405000 chr2D 84.073 1036 98 46 1774 2784 539165313 539164320 0.000000e+00 937.0
2 TraesCS2D01G405000 chr2D 81.190 622 113 3 3204 3825 519900600 519899983 9.370000e-137 497.0
3 TraesCS2D01G405000 chr2D 87.791 172 21 0 2990 3161 519340202 519340031 8.230000e-48 202.0
4 TraesCS2D01G405000 chr2D 93.233 133 8 1 895 1027 519902751 519902620 1.380000e-45 195.0
5 TraesCS2D01G405000 chr2D 83.152 184 27 3 2967 3148 519901062 519900881 1.080000e-36 165.0
6 TraesCS2D01G405000 chr2D 83.459 133 8 4 895 1027 519341502 519341384 1.430000e-20 111.0
7 TraesCS2D01G405000 chr2B 97.838 2081 25 4 2782 4850 612065571 612067643 0.000000e+00 3576.0
8 TraesCS2D01G405000 chr2B 96.314 1275 28 11 505 1773 612064321 612065582 0.000000e+00 2076.0
9 TraesCS2D01G405000 chr2B 95.204 1272 42 11 508 1773 612010406 612011664 0.000000e+00 1993.0
10 TraesCS2D01G405000 chr2B 95.374 1016 41 6 1774 2786 406113735 406114747 0.000000e+00 1611.0
11 TraesCS2D01G405000 chr2B 93.424 1034 63 4 1766 2798 323060452 323059423 0.000000e+00 1528.0
12 TraesCS2D01G405000 chr2B 97.884 378 7 1 2782 3159 612011653 612012029 0.000000e+00 652.0
13 TraesCS2D01G405000 chr2B 80.666 631 110 3 3204 3825 611312245 611311618 3.400000e-131 479.0
14 TraesCS2D01G405000 chr2B 87.421 159 20 0 2990 3148 611312525 611312367 2.980000e-42 183.0
15 TraesCS2D01G405000 chr2B 100.000 53 0 0 757 809 612010708 612010656 1.110000e-16 99.0
16 TraesCS2D01G405000 chr2B 100.000 53 0 0 757 809 612064626 612064574 1.110000e-16 99.0
17 TraesCS2D01G405000 chr2B 100.000 36 0 0 4729 4764 611066439 611066404 3.130000e-07 67.6
18 TraesCS2D01G405000 chr4B 96.881 1026 29 3 1770 2794 377799837 377798814 0.000000e+00 1714.0
19 TraesCS2D01G405000 chr5B 95.262 1013 47 1 1774 2786 710360418 710361429 0.000000e+00 1604.0
20 TraesCS2D01G405000 chr5B 94.395 1017 53 4 1774 2788 608349662 608348648 0.000000e+00 1559.0
21 TraesCS2D01G405000 chr3B 94.990 1018 48 3 1770 2787 421109662 421110676 0.000000e+00 1594.0
22 TraesCS2D01G405000 chr3B 94.373 1013 52 4 1776 2787 549034841 549033833 0.000000e+00 1550.0
23 TraesCS2D01G405000 chr3B 93.996 1016 57 4 1774 2787 761204941 761203928 0.000000e+00 1535.0
24 TraesCS2D01G405000 chr7B 93.990 1015 57 4 1775 2788 721415935 721414924 0.000000e+00 1533.0
25 TraesCS2D01G405000 chr7D 98.008 502 7 1 1 502 631381136 631380638 0.000000e+00 869.0
26 TraesCS2D01G405000 chr7D 93.671 237 13 2 267 502 566941467 566941232 2.150000e-93 353.0
27 TraesCS2D01G405000 chr7D 93.684 190 12 0 524 713 203490762 203490951 7.950000e-73 285.0
28 TraesCS2D01G405000 chr7D 93.684 190 12 0 524 713 381910739 381910928 7.950000e-73 285.0
29 TraesCS2D01G405000 chr5A 90.297 505 40 3 1 502 461522012 461522510 0.000000e+00 652.0
30 TraesCS2D01G405000 chr2A 81.570 586 101 5 3230 3813 661669757 661669177 1.220000e-130 477.0
31 TraesCS2D01G405000 chr5D 88.757 338 24 7 179 502 242648961 242648624 7.560000e-108 401.0
32 TraesCS2D01G405000 chr5D 95.299 234 10 1 269 502 436603630 436603862 2.130000e-98 370.0
33 TraesCS2D01G405000 chr4D 96.624 237 8 0 269 505 456276191 456275955 1.270000e-105 394.0
34 TraesCS2D01G405000 chr4D 93.684 190 12 0 524 713 123326235 123326424 7.950000e-73 285.0
35 TraesCS2D01G405000 chr4D 100.000 28 0 0 3242 3269 480850439 480850412 9.000000e-03 52.8
36 TraesCS2D01G405000 chr1D 97.009 234 7 0 269 502 38791400 38791167 1.270000e-105 394.0
37 TraesCS2D01G405000 chr3D 94.215 242 13 1 262 502 351017830 351018071 7.670000e-98 368.0
38 TraesCS2D01G405000 chr3D 94.215 242 13 1 262 502 462046427 462046668 7.670000e-98 368.0
39 TraesCS2D01G405000 chrUn 93.684 190 12 0 524 713 206789410 206789599 7.950000e-73 285.0
40 TraesCS2D01G405000 chr7A 93.684 190 12 0 524 713 120850401 120850212 7.950000e-73 285.0
41 TraesCS2D01G405000 chr6D 93.684 190 12 0 524 713 124508286 124508475 7.950000e-73 285.0
42 TraesCS2D01G405000 chr1B 93.158 190 13 0 524 713 672563379 672563190 3.700000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G405000 chr2D 520037371 520042220 4849 False 8957.000000 8957 100.000000 1 4850 1 chr2D.!!$F1 4849
1 TraesCS2D01G405000 chr2D 539164320 539165313 993 True 937.000000 937 84.073000 1774 2784 1 chr2D.!!$R1 1010
2 TraesCS2D01G405000 chr2D 519899983 519902751 2768 True 285.666667 497 85.858333 895 3825 3 chr2D.!!$R3 2930
3 TraesCS2D01G405000 chr2B 612064321 612067643 3322 False 2826.000000 3576 97.076000 505 4850 2 chr2B.!!$F3 4345
4 TraesCS2D01G405000 chr2B 406113735 406114747 1012 False 1611.000000 1611 95.374000 1774 2786 1 chr2B.!!$F1 1012
5 TraesCS2D01G405000 chr2B 323059423 323060452 1029 True 1528.000000 1528 93.424000 1766 2798 1 chr2B.!!$R1 1032
6 TraesCS2D01G405000 chr2B 612010406 612012029 1623 False 1322.500000 1993 96.544000 508 3159 2 chr2B.!!$F2 2651
7 TraesCS2D01G405000 chr2B 611311618 611312525 907 True 331.000000 479 84.043500 2990 3825 2 chr2B.!!$R5 835
8 TraesCS2D01G405000 chr4B 377798814 377799837 1023 True 1714.000000 1714 96.881000 1770 2794 1 chr4B.!!$R1 1024
9 TraesCS2D01G405000 chr5B 710360418 710361429 1011 False 1604.000000 1604 95.262000 1774 2786 1 chr5B.!!$F1 1012
10 TraesCS2D01G405000 chr5B 608348648 608349662 1014 True 1559.000000 1559 94.395000 1774 2788 1 chr5B.!!$R1 1014
11 TraesCS2D01G405000 chr3B 421109662 421110676 1014 False 1594.000000 1594 94.990000 1770 2787 1 chr3B.!!$F1 1017
12 TraesCS2D01G405000 chr3B 549033833 549034841 1008 True 1550.000000 1550 94.373000 1776 2787 1 chr3B.!!$R1 1011
13 TraesCS2D01G405000 chr3B 761203928 761204941 1013 True 1535.000000 1535 93.996000 1774 2787 1 chr3B.!!$R2 1013
14 TraesCS2D01G405000 chr7B 721414924 721415935 1011 True 1533.000000 1533 93.990000 1775 2788 1 chr7B.!!$R1 1013
15 TraesCS2D01G405000 chr2A 661669177 661669757 580 True 477.000000 477 81.570000 3230 3813 1 chr2A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.033796 CATGTGGGGGTCTGATTGCT 60.034 55.0 0.00 0.00 0.00 3.91 F
865 871 0.043637 ACCTTGTCTTCCCGGGGATA 59.956 55.0 23.50 6.34 0.00 2.59 F
1260 1266 0.678048 GGGAGATGTGCTTTCGCCTT 60.678 55.0 4.51 0.00 33.95 4.35 F
2489 3363 1.473857 GCGCTGCAAAACATATGGCG 61.474 55.0 13.64 13.64 43.21 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2778 0.394762 TACGAGGCCTGACATACGGT 60.395 55.0 12.0 0.0 0.00 4.83 R
2489 3363 0.674895 CCACACCCAAGCTGCTAGTC 60.675 60.0 0.9 0.0 0.00 2.59 R
2984 4084 2.327200 TGGAGAAGATCTGCATGCAG 57.673 50.0 36.8 36.8 39.98 4.41 R
4225 5585 1.598882 TGTGTTGTGTGTGTGTGTGT 58.401 45.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.981302 TCCGCTGTCACCATCCTG 59.019 61.111 0.00 0.00 0.00 3.86
18 19 2.821366 CCGCTGTCACCATCCTGC 60.821 66.667 0.00 0.00 0.00 4.85
19 20 2.821366 CGCTGTCACCATCCTGCC 60.821 66.667 0.00 0.00 0.00 4.85
20 21 2.673523 GCTGTCACCATCCTGCCT 59.326 61.111 0.00 0.00 0.00 4.75
21 22 1.001641 GCTGTCACCATCCTGCCTT 60.002 57.895 0.00 0.00 0.00 4.35
22 23 1.310933 GCTGTCACCATCCTGCCTTG 61.311 60.000 0.00 0.00 0.00 3.61
23 24 1.303561 TGTCACCATCCTGCCTTGC 60.304 57.895 0.00 0.00 0.00 4.01
24 25 2.046023 TCACCATCCTGCCTTGCG 60.046 61.111 0.00 0.00 0.00 4.85
25 26 3.818787 CACCATCCTGCCTTGCGC 61.819 66.667 0.00 0.00 38.31 6.09
43 44 3.470567 CGCCGTCGTCTGCACTTC 61.471 66.667 0.00 0.00 0.00 3.01
44 45 3.470567 GCCGTCGTCTGCACTTCG 61.471 66.667 0.00 0.00 0.00 3.79
45 46 2.050351 CCGTCGTCTGCACTTCGT 60.050 61.111 0.00 0.00 0.00 3.85
46 47 1.660575 CCGTCGTCTGCACTTCGTT 60.661 57.895 0.00 0.00 0.00 3.85
47 48 1.482955 CGTCGTCTGCACTTCGTTG 59.517 57.895 0.00 0.00 0.00 4.10
48 49 1.206745 CGTCGTCTGCACTTCGTTGT 61.207 55.000 0.00 0.00 0.00 3.32
49 50 0.503117 GTCGTCTGCACTTCGTTGTC 59.497 55.000 0.00 0.00 0.00 3.18
50 51 0.596600 TCGTCTGCACTTCGTTGTCC 60.597 55.000 0.00 0.00 0.00 4.02
51 52 1.557443 CGTCTGCACTTCGTTGTCCC 61.557 60.000 0.00 0.00 0.00 4.46
52 53 1.070786 TCTGCACTTCGTTGTCCCC 59.929 57.895 0.00 0.00 0.00 4.81
53 54 1.227823 CTGCACTTCGTTGTCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
54 55 0.606401 CTGCACTTCGTTGTCCCCAT 60.606 55.000 0.00 0.00 0.00 4.00
55 56 0.605319 TGCACTTCGTTGTCCCCATC 60.605 55.000 0.00 0.00 0.00 3.51
56 57 0.605319 GCACTTCGTTGTCCCCATCA 60.605 55.000 0.00 0.00 0.00 3.07
57 58 1.950484 GCACTTCGTTGTCCCCATCAT 60.950 52.381 0.00 0.00 0.00 2.45
58 59 2.009774 CACTTCGTTGTCCCCATCATC 58.990 52.381 0.00 0.00 0.00 2.92
59 60 1.628340 ACTTCGTTGTCCCCATCATCA 59.372 47.619 0.00 0.00 0.00 3.07
60 61 2.039746 ACTTCGTTGTCCCCATCATCAA 59.960 45.455 0.00 0.00 0.00 2.57
61 62 2.107950 TCGTTGTCCCCATCATCAAC 57.892 50.000 0.00 0.00 37.42 3.18
63 64 0.451783 GTTGTCCCCATCATCAACGC 59.548 55.000 0.00 0.00 32.56 4.84
64 65 0.679640 TTGTCCCCATCATCAACGCC 60.680 55.000 0.00 0.00 0.00 5.68
65 66 1.077787 GTCCCCATCATCAACGCCA 60.078 57.895 0.00 0.00 0.00 5.69
66 67 0.466189 GTCCCCATCATCAACGCCAT 60.466 55.000 0.00 0.00 0.00 4.40
67 68 0.179020 TCCCCATCATCAACGCCATC 60.179 55.000 0.00 0.00 0.00 3.51
68 69 0.466007 CCCCATCATCAACGCCATCA 60.466 55.000 0.00 0.00 0.00 3.07
69 70 1.391577 CCCATCATCAACGCCATCAA 58.608 50.000 0.00 0.00 0.00 2.57
70 71 1.066002 CCCATCATCAACGCCATCAAC 59.934 52.381 0.00 0.00 0.00 3.18
71 72 1.744522 CCATCATCAACGCCATCAACA 59.255 47.619 0.00 0.00 0.00 3.33
72 73 2.478370 CCATCATCAACGCCATCAACAC 60.478 50.000 0.00 0.00 0.00 3.32
73 74 1.164411 TCATCAACGCCATCAACACC 58.836 50.000 0.00 0.00 0.00 4.16
74 75 0.179192 CATCAACGCCATCAACACCG 60.179 55.000 0.00 0.00 0.00 4.94
75 76 1.305219 ATCAACGCCATCAACACCGG 61.305 55.000 0.00 0.00 0.00 5.28
76 77 3.361977 AACGCCATCAACACCGGC 61.362 61.111 0.00 0.00 42.64 6.13
79 80 3.443045 GCCATCAACACCGGCCTG 61.443 66.667 0.00 0.00 40.07 4.85
80 81 2.751436 CCATCAACACCGGCCTGG 60.751 66.667 0.00 11.48 46.41 4.45
81 82 2.350895 CATCAACACCGGCCTGGA 59.649 61.111 18.74 0.00 42.00 3.86
82 83 2.040544 CATCAACACCGGCCTGGAC 61.041 63.158 18.74 0.00 42.00 4.02
83 84 3.605749 ATCAACACCGGCCTGGACG 62.606 63.158 16.82 16.82 42.00 4.79
107 108 3.716539 GATCGCTGCAGCACCGGTA 62.717 63.158 36.03 15.22 42.21 4.02
108 109 3.723235 ATCGCTGCAGCACCGGTAG 62.723 63.158 36.03 19.12 42.21 3.18
113 114 4.715523 GCAGCACCGGTAGGCCAA 62.716 66.667 6.87 0.00 42.76 4.52
114 115 2.746277 CAGCACCGGTAGGCCAAC 60.746 66.667 6.87 0.00 42.76 3.77
115 116 4.029809 AGCACCGGTAGGCCAACC 62.030 66.667 6.87 0.00 42.76 3.77
117 118 2.267961 CACCGGTAGGCCAACCTC 59.732 66.667 6.87 0.00 46.34 3.85
118 119 2.203877 ACCGGTAGGCCAACCTCA 60.204 61.111 4.49 0.00 46.34 3.86
119 120 1.844289 ACCGGTAGGCCAACCTCAA 60.844 57.895 4.49 0.00 46.34 3.02
120 121 1.377229 CCGGTAGGCCAACCTCAAA 59.623 57.895 5.01 0.00 46.34 2.69
121 122 0.250989 CCGGTAGGCCAACCTCAAAA 60.251 55.000 5.01 0.00 46.34 2.44
122 123 1.611519 CGGTAGGCCAACCTCAAAAA 58.388 50.000 5.01 0.00 46.34 1.94
123 124 2.167662 CGGTAGGCCAACCTCAAAAAT 58.832 47.619 5.01 0.00 46.34 1.82
124 125 2.094752 CGGTAGGCCAACCTCAAAAATG 60.095 50.000 5.01 0.00 46.34 2.32
125 126 2.353704 GGTAGGCCAACCTCAAAAATGC 60.354 50.000 5.01 0.00 46.34 3.56
126 127 0.318120 AGGCCAACCTCAAAAATGCG 59.682 50.000 5.01 0.00 46.34 4.73
127 128 1.291184 GGCCAACCTCAAAAATGCGC 61.291 55.000 0.00 0.00 0.00 6.09
128 129 0.599728 GCCAACCTCAAAAATGCGCA 60.600 50.000 14.96 14.96 0.00 6.09
129 130 1.139163 CCAACCTCAAAAATGCGCAC 58.861 50.000 14.90 0.00 0.00 5.34
130 131 0.777631 CAACCTCAAAAATGCGCACG 59.222 50.000 14.90 0.00 0.00 5.34
131 132 0.939106 AACCTCAAAAATGCGCACGC 60.939 50.000 14.90 8.33 42.35 5.34
132 133 1.081242 CCTCAAAAATGCGCACGCT 60.081 52.632 14.90 0.00 42.51 5.07
133 134 1.067199 CCTCAAAAATGCGCACGCTC 61.067 55.000 14.90 0.00 42.51 5.03
134 135 1.067199 CTCAAAAATGCGCACGCTCC 61.067 55.000 14.90 0.00 42.51 4.70
135 136 2.126888 AAAAATGCGCACGCTCCG 60.127 55.556 14.90 0.00 42.51 4.63
136 137 3.609214 AAAAATGCGCACGCTCCGG 62.609 57.895 14.90 0.00 42.51 5.14
149 150 4.689549 TCCGGCCACCTCCTCGAA 62.690 66.667 2.24 0.00 0.00 3.71
150 151 4.452733 CCGGCCACCTCCTCGAAC 62.453 72.222 2.24 0.00 0.00 3.95
151 152 4.452733 CGGCCACCTCCTCGAACC 62.453 72.222 2.24 0.00 0.00 3.62
152 153 4.097361 GGCCACCTCCTCGAACCC 62.097 72.222 0.00 0.00 0.00 4.11
153 154 4.097361 GCCACCTCCTCGAACCCC 62.097 72.222 0.00 0.00 0.00 4.95
154 155 3.771160 CCACCTCCTCGAACCCCG 61.771 72.222 0.00 0.00 40.25 5.73
155 156 2.995574 CACCTCCTCGAACCCCGT 60.996 66.667 0.00 0.00 39.75 5.28
156 157 2.679287 ACCTCCTCGAACCCCGTC 60.679 66.667 0.00 0.00 39.75 4.79
157 158 3.823330 CCTCCTCGAACCCCGTCG 61.823 72.222 0.00 0.00 42.48 5.12
158 159 4.493747 CTCCTCGAACCCCGTCGC 62.494 72.222 0.00 0.00 40.88 5.19
160 161 4.796231 CCTCGAACCCCGTCGCAG 62.796 72.222 0.00 0.00 40.88 5.18
164 165 4.778143 GAACCCCGTCGCAGCCAT 62.778 66.667 0.00 0.00 0.00 4.40
165 166 3.379865 GAACCCCGTCGCAGCCATA 62.380 63.158 0.00 0.00 0.00 2.74
166 167 3.385749 AACCCCGTCGCAGCCATAG 62.386 63.158 0.00 0.00 0.00 2.23
169 170 4.529219 CCGTCGCAGCCATAGCCA 62.529 66.667 0.00 0.00 41.25 4.75
170 171 2.963854 CGTCGCAGCCATAGCCAG 60.964 66.667 0.00 0.00 41.25 4.85
171 172 2.590007 GTCGCAGCCATAGCCAGG 60.590 66.667 0.00 0.00 41.25 4.45
179 180 2.959967 CCATAGCCAGGCAACAACA 58.040 52.632 15.80 0.00 41.41 3.33
180 181 1.255882 CCATAGCCAGGCAACAACAA 58.744 50.000 15.80 0.00 41.41 2.83
181 182 1.067635 CCATAGCCAGGCAACAACAAC 60.068 52.381 15.80 0.00 41.41 3.32
182 183 1.612950 CATAGCCAGGCAACAACAACA 59.387 47.619 15.80 0.00 41.41 3.33
183 184 1.769026 TAGCCAGGCAACAACAACAA 58.231 45.000 15.80 0.00 41.41 2.83
184 185 0.175531 AGCCAGGCAACAACAACAAC 59.824 50.000 15.80 0.00 41.41 3.32
185 186 0.108424 GCCAGGCAACAACAACAACA 60.108 50.000 6.55 0.00 41.41 3.33
186 187 1.674221 GCCAGGCAACAACAACAACAA 60.674 47.619 6.55 0.00 41.41 2.83
187 188 1.999024 CCAGGCAACAACAACAACAAC 59.001 47.619 0.00 0.00 41.41 3.32
188 189 2.611473 CCAGGCAACAACAACAACAACA 60.611 45.455 0.00 0.00 41.41 3.33
189 190 3.062763 CAGGCAACAACAACAACAACAA 58.937 40.909 0.00 0.00 41.41 2.83
190 191 3.063485 AGGCAACAACAACAACAACAAC 58.937 40.909 0.00 0.00 41.41 3.32
191 192 2.802816 GGCAACAACAACAACAACAACA 59.197 40.909 0.00 0.00 0.00 3.33
192 193 3.248602 GGCAACAACAACAACAACAACAA 59.751 39.130 0.00 0.00 0.00 2.83
193 194 4.207599 GCAACAACAACAACAACAACAAC 58.792 39.130 0.00 0.00 0.00 3.32
194 195 4.440946 CAACAACAACAACAACAACAACG 58.559 39.130 0.00 0.00 0.00 4.10
195 196 3.053455 ACAACAACAACAACAACAACGG 58.947 40.909 0.00 0.00 0.00 4.44
196 197 1.704070 ACAACAACAACAACAACGGC 58.296 45.000 0.00 0.00 0.00 5.68
197 198 0.637738 CAACAACAACAACAACGGCG 59.362 50.000 4.80 4.80 0.00 6.46
198 199 1.073768 AACAACAACAACAACGGCGC 61.074 50.000 6.90 0.00 0.00 6.53
199 200 2.103340 AACAACAACAACGGCGCC 59.897 55.556 19.07 19.07 0.00 6.53
200 201 2.701780 AACAACAACAACGGCGCCA 61.702 52.632 28.98 0.00 0.00 5.69
201 202 2.353376 CAACAACAACGGCGCCAG 60.353 61.111 28.98 21.29 0.00 4.85
202 203 3.591835 AACAACAACGGCGCCAGG 61.592 61.111 28.98 17.32 0.00 4.45
225 226 3.103911 GTGCCGGACGAGTTCACG 61.104 66.667 5.05 0.00 39.31 4.35
227 228 2.355481 GCCGGACGAGTTCACGTT 60.355 61.111 5.05 0.00 46.52 3.99
228 229 2.654912 GCCGGACGAGTTCACGTTG 61.655 63.158 5.05 0.00 46.52 4.10
229 230 2.654912 CCGGACGAGTTCACGTTGC 61.655 63.158 0.00 0.00 46.52 4.17
230 231 1.660575 CGGACGAGTTCACGTTGCT 60.661 57.895 0.00 0.00 46.52 3.91
231 232 1.213094 CGGACGAGTTCACGTTGCTT 61.213 55.000 0.00 0.00 46.52 3.91
232 233 0.507358 GGACGAGTTCACGTTGCTTC 59.493 55.000 0.00 0.00 46.52 3.86
233 234 0.158928 GACGAGTTCACGTTGCTTCG 59.841 55.000 7.49 7.49 46.52 3.79
234 235 1.213094 ACGAGTTCACGTTGCTTCGG 61.213 55.000 12.13 0.00 44.14 4.30
235 236 1.204312 GAGTTCACGTTGCTTCGGC 59.796 57.895 0.00 0.00 42.19 5.54
245 246 2.592308 GCTTCGGCAGGAGGGATT 59.408 61.111 0.00 0.00 41.33 3.01
246 247 1.821332 GCTTCGGCAGGAGGGATTG 60.821 63.158 0.00 0.00 41.33 2.67
247 248 1.604378 CTTCGGCAGGAGGGATTGT 59.396 57.895 0.00 0.00 0.00 2.71
248 249 0.462759 CTTCGGCAGGAGGGATTGTC 60.463 60.000 0.00 0.00 0.00 3.18
249 250 1.910580 TTCGGCAGGAGGGATTGTCC 61.911 60.000 0.00 0.00 35.23 4.02
250 251 2.669133 CGGCAGGAGGGATTGTCCA 61.669 63.158 0.00 0.00 38.64 4.02
251 252 1.077429 GGCAGGAGGGATTGTCCAC 60.077 63.158 0.00 0.00 38.64 4.02
252 253 1.450312 GCAGGAGGGATTGTCCACG 60.450 63.158 0.00 0.00 38.64 4.94
253 254 1.221840 CAGGAGGGATTGTCCACGG 59.778 63.158 0.00 0.00 38.64 4.94
254 255 1.229529 AGGAGGGATTGTCCACGGT 60.230 57.895 0.00 0.00 38.64 4.83
255 256 1.078426 GGAGGGATTGTCCACGGTG 60.078 63.158 0.00 0.00 38.64 4.94
256 257 1.078426 GAGGGATTGTCCACGGTGG 60.078 63.158 21.27 21.27 38.64 4.61
257 258 1.838073 GAGGGATTGTCCACGGTGGT 61.838 60.000 25.53 7.41 38.64 4.16
258 259 1.674322 GGGATTGTCCACGGTGGTG 60.674 63.158 25.53 2.48 43.99 4.17
259 260 1.072505 GGATTGTCCACGGTGGTGT 59.927 57.895 25.53 10.89 42.80 4.16
260 261 1.234615 GGATTGTCCACGGTGGTGTG 61.235 60.000 25.53 1.34 42.80 3.82
261 262 1.852067 GATTGTCCACGGTGGTGTGC 61.852 60.000 25.53 14.78 42.80 4.57
262 263 2.616797 ATTGTCCACGGTGGTGTGCA 62.617 55.000 25.53 16.88 42.80 4.57
263 264 2.281484 GTCCACGGTGGTGTGCAT 60.281 61.111 25.53 0.00 42.80 3.96
264 265 2.281414 TCCACGGTGGTGTGCATG 60.281 61.111 25.53 0.00 42.80 4.06
265 266 2.594303 CCACGGTGGTGTGCATGT 60.594 61.111 19.15 0.00 42.80 3.21
266 267 2.638719 CACGGTGGTGTGCATGTG 59.361 61.111 0.00 0.00 39.38 3.21
267 268 2.594303 ACGGTGGTGTGCATGTGG 60.594 61.111 0.00 0.00 0.00 4.17
268 269 3.364441 CGGTGGTGTGCATGTGGG 61.364 66.667 0.00 0.00 0.00 4.61
269 270 2.990967 GGTGGTGTGCATGTGGGG 60.991 66.667 0.00 0.00 0.00 4.96
270 271 2.990967 GTGGTGTGCATGTGGGGG 60.991 66.667 0.00 0.00 0.00 5.40
271 272 3.506743 TGGTGTGCATGTGGGGGT 61.507 61.111 0.00 0.00 0.00 4.95
272 273 2.676471 GGTGTGCATGTGGGGGTC 60.676 66.667 0.00 0.00 0.00 4.46
273 274 2.436109 GTGTGCATGTGGGGGTCT 59.564 61.111 0.00 0.00 0.00 3.85
274 275 1.973281 GTGTGCATGTGGGGGTCTG 60.973 63.158 0.00 0.00 0.00 3.51
275 276 2.152729 TGTGCATGTGGGGGTCTGA 61.153 57.895 0.00 0.00 0.00 3.27
276 277 1.304282 GTGCATGTGGGGGTCTGAT 59.696 57.895 0.00 0.00 0.00 2.90
277 278 0.323725 GTGCATGTGGGGGTCTGATT 60.324 55.000 0.00 0.00 0.00 2.57
278 279 0.323633 TGCATGTGGGGGTCTGATTG 60.324 55.000 0.00 0.00 0.00 2.67
279 280 1.669999 GCATGTGGGGGTCTGATTGC 61.670 60.000 0.00 0.00 0.00 3.56
280 281 0.033796 CATGTGGGGGTCTGATTGCT 60.034 55.000 0.00 0.00 0.00 3.91
281 282 0.706433 ATGTGGGGGTCTGATTGCTT 59.294 50.000 0.00 0.00 0.00 3.91
282 283 0.482446 TGTGGGGGTCTGATTGCTTT 59.518 50.000 0.00 0.00 0.00 3.51
283 284 1.133199 TGTGGGGGTCTGATTGCTTTT 60.133 47.619 0.00 0.00 0.00 2.27
284 285 1.273327 GTGGGGGTCTGATTGCTTTTG 59.727 52.381 0.00 0.00 0.00 2.44
285 286 1.133199 TGGGGGTCTGATTGCTTTTGT 60.133 47.619 0.00 0.00 0.00 2.83
286 287 1.970640 GGGGGTCTGATTGCTTTTGTT 59.029 47.619 0.00 0.00 0.00 2.83
287 288 2.368548 GGGGGTCTGATTGCTTTTGTTT 59.631 45.455 0.00 0.00 0.00 2.83
288 289 3.181455 GGGGGTCTGATTGCTTTTGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
289 290 4.450976 GGGGTCTGATTGCTTTTGTTTTT 58.549 39.130 0.00 0.00 0.00 1.94
310 311 7.504926 TTTTTAGATCTAGGGGTGTATGTGT 57.495 36.000 2.02 0.00 0.00 3.72
311 312 7.504926 TTTTAGATCTAGGGGTGTATGTGTT 57.495 36.000 2.02 0.00 0.00 3.32
312 313 8.612486 TTTTAGATCTAGGGGTGTATGTGTTA 57.388 34.615 2.02 0.00 0.00 2.41
313 314 8.792830 TTTAGATCTAGGGGTGTATGTGTTAT 57.207 34.615 2.02 0.00 0.00 1.89
314 315 8.792830 TTAGATCTAGGGGTGTATGTGTTATT 57.207 34.615 2.02 0.00 0.00 1.40
315 316 7.691993 AGATCTAGGGGTGTATGTGTTATTT 57.308 36.000 0.00 0.00 0.00 1.40
316 317 8.102484 AGATCTAGGGGTGTATGTGTTATTTT 57.898 34.615 0.00 0.00 0.00 1.82
317 318 8.557450 AGATCTAGGGGTGTATGTGTTATTTTT 58.443 33.333 0.00 0.00 0.00 1.94
344 345 9.859427 TTGCTAAATCAATTTCTTACAATCTGG 57.141 29.630 0.00 0.00 0.00 3.86
345 346 7.975616 TGCTAAATCAATTTCTTACAATCTGGC 59.024 33.333 0.00 0.00 0.00 4.85
346 347 7.436376 GCTAAATCAATTTCTTACAATCTGGCC 59.564 37.037 0.00 0.00 0.00 5.36
347 348 5.859205 ATCAATTTCTTACAATCTGGCCC 57.141 39.130 0.00 0.00 0.00 5.80
348 349 4.023291 TCAATTTCTTACAATCTGGCCCC 58.977 43.478 0.00 0.00 0.00 5.80
349 350 3.756082 ATTTCTTACAATCTGGCCCCA 57.244 42.857 0.00 0.00 0.00 4.96
350 351 2.507407 TTCTTACAATCTGGCCCCAC 57.493 50.000 0.00 0.00 0.00 4.61
351 352 1.668826 TCTTACAATCTGGCCCCACT 58.331 50.000 0.00 0.00 0.00 4.00
352 353 1.992557 TCTTACAATCTGGCCCCACTT 59.007 47.619 0.00 0.00 0.00 3.16
353 354 2.094675 CTTACAATCTGGCCCCACTTG 58.905 52.381 0.00 1.30 0.00 3.16
354 355 1.072266 TACAATCTGGCCCCACTTGT 58.928 50.000 0.00 7.77 33.81 3.16
355 356 1.072266 ACAATCTGGCCCCACTTGTA 58.928 50.000 0.00 0.00 30.05 2.41
356 357 1.427368 ACAATCTGGCCCCACTTGTAA 59.573 47.619 0.00 0.00 30.05 2.41
357 358 2.094675 CAATCTGGCCCCACTTGTAAG 58.905 52.381 0.00 0.00 0.00 2.34
358 359 1.668826 ATCTGGCCCCACTTGTAAGA 58.331 50.000 0.00 0.00 0.00 2.10
359 360 1.440618 TCTGGCCCCACTTGTAAGAA 58.559 50.000 0.00 0.00 0.00 2.52
360 361 1.777878 TCTGGCCCCACTTGTAAGAAA 59.222 47.619 0.00 0.00 0.00 2.52
361 362 2.162681 CTGGCCCCACTTGTAAGAAAG 58.837 52.381 0.00 0.00 0.00 2.62
362 363 1.497286 TGGCCCCACTTGTAAGAAAGT 59.503 47.619 0.00 0.00 41.08 2.66
374 375 7.602753 ACTTGTAAGAAAGTGATTAAATGGGC 58.397 34.615 0.00 0.00 38.95 5.36
375 376 6.524101 TGTAAGAAAGTGATTAAATGGGCC 57.476 37.500 0.00 0.00 0.00 5.80
376 377 6.013379 TGTAAGAAAGTGATTAAATGGGCCA 58.987 36.000 9.61 9.61 0.00 5.36
377 378 6.495181 TGTAAGAAAGTGATTAAATGGGCCAA 59.505 34.615 11.89 0.00 0.00 4.52
378 379 6.432403 AAGAAAGTGATTAAATGGGCCAAA 57.568 33.333 11.89 0.00 0.00 3.28
379 380 6.625532 AGAAAGTGATTAAATGGGCCAAAT 57.374 33.333 11.89 5.86 0.00 2.32
380 381 6.643388 AGAAAGTGATTAAATGGGCCAAATC 58.357 36.000 11.89 16.18 0.00 2.17
381 382 6.213195 AGAAAGTGATTAAATGGGCCAAATCA 59.787 34.615 22.29 22.29 36.32 2.57
383 384 4.441792 GTGATTAAATGGGCCAAATCACC 58.558 43.478 33.18 22.54 46.41 4.02
384 385 4.683129 GTGATTAAATGGGCCAAATCACCC 60.683 45.833 33.18 20.13 46.41 4.61
388 389 3.284336 GGGCCAAATCACCCGTTC 58.716 61.111 4.39 0.00 36.07 3.95
389 390 1.605165 GGGCCAAATCACCCGTTCA 60.605 57.895 4.39 0.00 36.07 3.18
390 391 1.595093 GGGCCAAATCACCCGTTCAG 61.595 60.000 4.39 0.00 36.07 3.02
391 392 0.893727 GGCCAAATCACCCGTTCAGT 60.894 55.000 0.00 0.00 0.00 3.41
392 393 0.240945 GCCAAATCACCCGTTCAGTG 59.759 55.000 0.00 0.00 36.54 3.66
393 394 0.240945 CCAAATCACCCGTTCAGTGC 59.759 55.000 0.00 0.00 35.14 4.40
394 395 1.238439 CAAATCACCCGTTCAGTGCT 58.762 50.000 0.00 0.00 35.14 4.40
395 396 1.608590 CAAATCACCCGTTCAGTGCTT 59.391 47.619 0.00 0.00 35.14 3.91
396 397 1.981256 AATCACCCGTTCAGTGCTTT 58.019 45.000 0.00 0.00 35.14 3.51
397 398 1.981256 ATCACCCGTTCAGTGCTTTT 58.019 45.000 0.00 0.00 35.14 2.27
398 399 1.757682 TCACCCGTTCAGTGCTTTTT 58.242 45.000 0.00 0.00 35.14 1.94
399 400 1.403679 TCACCCGTTCAGTGCTTTTTG 59.596 47.619 0.00 0.00 35.14 2.44
400 401 0.102300 ACCCGTTCAGTGCTTTTTGC 59.898 50.000 0.00 0.00 43.25 3.68
416 417 7.412137 GCTTTTTGCAATGACTTAACAGATT 57.588 32.000 0.00 0.00 42.31 2.40
417 418 7.854534 GCTTTTTGCAATGACTTAACAGATTT 58.145 30.769 0.00 0.00 42.31 2.17
418 419 8.337532 GCTTTTTGCAATGACTTAACAGATTTT 58.662 29.630 0.00 0.00 42.31 1.82
419 420 9.853921 CTTTTTGCAATGACTTAACAGATTTTC 57.146 29.630 0.00 0.00 0.00 2.29
420 421 7.945033 TTTGCAATGACTTAACAGATTTTCC 57.055 32.000 0.00 0.00 0.00 3.13
421 422 5.698832 TGCAATGACTTAACAGATTTTCCG 58.301 37.500 0.00 0.00 0.00 4.30
422 423 5.095490 GCAATGACTTAACAGATTTTCCGG 58.905 41.667 0.00 0.00 0.00 5.14
423 424 5.335661 GCAATGACTTAACAGATTTTCCGGT 60.336 40.000 0.00 0.00 0.00 5.28
424 425 5.880054 ATGACTTAACAGATTTTCCGGTG 57.120 39.130 0.00 0.00 0.00 4.94
425 426 4.710324 TGACTTAACAGATTTTCCGGTGT 58.290 39.130 0.00 0.00 0.00 4.16
426 427 5.127491 TGACTTAACAGATTTTCCGGTGTT 58.873 37.500 10.32 10.32 37.00 3.32
427 428 5.591067 TGACTTAACAGATTTTCCGGTGTTT 59.409 36.000 10.68 0.00 34.92 2.83
428 429 6.095720 TGACTTAACAGATTTTCCGGTGTTTT 59.904 34.615 10.68 0.00 34.92 2.43
429 430 6.500910 ACTTAACAGATTTTCCGGTGTTTTC 58.499 36.000 10.68 0.00 34.92 2.29
430 431 6.320418 ACTTAACAGATTTTCCGGTGTTTTCT 59.680 34.615 10.68 1.74 34.92 2.52
431 432 4.568152 ACAGATTTTCCGGTGTTTTCTG 57.432 40.909 16.80 16.80 36.17 3.02
432 433 3.243401 ACAGATTTTCCGGTGTTTTCTGC 60.243 43.478 17.72 0.00 34.00 4.26
433 434 2.955660 AGATTTTCCGGTGTTTTCTGCA 59.044 40.909 0.00 0.00 0.00 4.41
434 435 3.383185 AGATTTTCCGGTGTTTTCTGCAA 59.617 39.130 0.00 0.00 0.00 4.08
435 436 2.570442 TTTCCGGTGTTTTCTGCAAC 57.430 45.000 0.00 0.00 0.00 4.17
436 437 0.378962 TTCCGGTGTTTTCTGCAACG 59.621 50.000 0.00 0.00 45.52 4.10
437 438 4.607024 CGGTGTTTTCTGCAACGG 57.393 55.556 0.00 0.00 42.63 4.44
438 439 2.018544 CGGTGTTTTCTGCAACGGA 58.981 52.632 0.00 0.00 42.63 4.69
439 440 0.591170 CGGTGTTTTCTGCAACGGAT 59.409 50.000 0.00 0.00 42.63 4.18
440 441 1.001815 CGGTGTTTTCTGCAACGGATT 60.002 47.619 0.00 0.00 42.63 3.01
441 442 2.224549 CGGTGTTTTCTGCAACGGATTA 59.775 45.455 0.00 0.00 42.63 1.75
442 443 3.304123 CGGTGTTTTCTGCAACGGATTAA 60.304 43.478 0.00 0.00 42.63 1.40
443 444 3.978855 GGTGTTTTCTGCAACGGATTAAC 59.021 43.478 0.00 0.00 0.00 2.01
444 445 3.662186 GTGTTTTCTGCAACGGATTAACG 59.338 43.478 0.00 0.00 40.31 3.18
445 446 3.560481 TGTTTTCTGCAACGGATTAACGA 59.440 39.130 0.00 0.00 37.61 3.85
446 447 4.148891 GTTTTCTGCAACGGATTAACGAG 58.851 43.478 0.00 0.00 37.61 4.18
447 448 2.736144 TCTGCAACGGATTAACGAGT 57.264 45.000 0.00 0.00 37.61 4.18
448 449 3.034721 TCTGCAACGGATTAACGAGTT 57.965 42.857 0.00 0.00 37.61 3.01
449 450 2.734606 TCTGCAACGGATTAACGAGTTG 59.265 45.455 11.95 11.95 44.66 3.16
450 451 1.801771 TGCAACGGATTAACGAGTTGG 59.198 47.619 15.80 3.89 42.80 3.77
451 452 1.802365 GCAACGGATTAACGAGTTGGT 59.198 47.619 15.80 0.00 42.80 3.67
452 453 2.412325 GCAACGGATTAACGAGTTGGTG 60.412 50.000 15.80 0.00 42.80 4.17
453 454 2.088950 ACGGATTAACGAGTTGGTGG 57.911 50.000 0.00 0.00 37.61 4.61
454 455 1.345415 ACGGATTAACGAGTTGGTGGT 59.655 47.619 0.00 0.00 37.61 4.16
455 456 2.224354 ACGGATTAACGAGTTGGTGGTT 60.224 45.455 0.00 0.00 37.61 3.67
456 457 2.809696 CGGATTAACGAGTTGGTGGTTT 59.190 45.455 0.00 0.00 35.47 3.27
457 458 3.120442 CGGATTAACGAGTTGGTGGTTTC 60.120 47.826 0.00 0.00 35.47 2.78
458 459 3.189910 GGATTAACGAGTTGGTGGTTTCC 59.810 47.826 0.00 0.00 0.00 3.13
459 460 3.564053 TTAACGAGTTGGTGGTTTCCT 57.436 42.857 0.00 0.00 0.00 3.36
460 461 1.675552 AACGAGTTGGTGGTTTCCTG 58.324 50.000 0.00 0.00 0.00 3.86
461 462 0.818040 ACGAGTTGGTGGTTTCCTGC 60.818 55.000 0.00 0.00 0.00 4.85
462 463 0.817634 CGAGTTGGTGGTTTCCTGCA 60.818 55.000 0.00 0.00 0.00 4.41
463 464 1.398692 GAGTTGGTGGTTTCCTGCAA 58.601 50.000 0.00 0.00 0.00 4.08
464 465 1.754226 GAGTTGGTGGTTTCCTGCAAA 59.246 47.619 0.00 0.00 0.00 3.68
465 466 1.480545 AGTTGGTGGTTTCCTGCAAAC 59.519 47.619 0.00 0.00 43.43 2.93
472 473 0.521735 GTTTCCTGCAAACCTAGCCG 59.478 55.000 0.00 0.00 38.86 5.52
473 474 1.241315 TTTCCTGCAAACCTAGCCGC 61.241 55.000 0.00 0.00 0.00 6.53
474 475 2.359850 CCTGCAAACCTAGCCGCA 60.360 61.111 0.00 0.00 0.00 5.69
475 476 1.971167 CCTGCAAACCTAGCCGCAA 60.971 57.895 0.00 0.00 33.21 4.85
476 477 1.523154 CCTGCAAACCTAGCCGCAAA 61.523 55.000 0.00 0.00 33.21 3.68
477 478 0.527565 CTGCAAACCTAGCCGCAAAT 59.472 50.000 0.00 0.00 33.21 2.32
478 479 0.243365 TGCAAACCTAGCCGCAAATG 59.757 50.000 0.00 0.00 0.00 2.32
479 480 0.243636 GCAAACCTAGCCGCAAATGT 59.756 50.000 0.00 0.00 0.00 2.71
480 481 1.981254 CAAACCTAGCCGCAAATGTG 58.019 50.000 0.00 0.00 0.00 3.21
482 483 0.251165 AACCTAGCCGCAAATGTGGT 60.251 50.000 14.07 4.51 46.99 4.16
483 484 0.960364 ACCTAGCCGCAAATGTGGTG 60.960 55.000 14.07 5.59 46.99 4.17
484 485 1.656818 CCTAGCCGCAAATGTGGTGG 61.657 60.000 14.07 10.16 46.99 4.61
485 486 0.960364 CTAGCCGCAAATGTGGTGGT 60.960 55.000 14.07 3.04 46.99 4.16
486 487 0.538516 TAGCCGCAAATGTGGTGGTT 60.539 50.000 14.07 1.84 46.99 3.67
487 488 1.068921 GCCGCAAATGTGGTGGTTT 59.931 52.632 14.07 0.00 46.99 3.27
488 489 0.943835 GCCGCAAATGTGGTGGTTTC 60.944 55.000 14.07 0.00 46.99 2.78
489 490 0.673437 CCGCAAATGTGGTGGTTTCT 59.327 50.000 4.82 0.00 40.69 2.52
490 491 1.068434 CCGCAAATGTGGTGGTTTCTT 59.932 47.619 4.82 0.00 40.69 2.52
491 492 2.126467 CGCAAATGTGGTGGTTTCTTG 58.874 47.619 0.00 0.00 0.00 3.02
492 493 1.866601 GCAAATGTGGTGGTTTCTTGC 59.133 47.619 0.00 0.00 0.00 4.01
493 494 2.741228 GCAAATGTGGTGGTTTCTTGCA 60.741 45.455 0.00 0.00 38.03 4.08
494 495 3.529533 CAAATGTGGTGGTTTCTTGCAA 58.470 40.909 0.00 0.00 0.00 4.08
495 496 4.128643 CAAATGTGGTGGTTTCTTGCAAT 58.871 39.130 0.00 0.00 0.00 3.56
496 497 4.420522 AATGTGGTGGTTTCTTGCAATT 57.579 36.364 0.00 0.00 0.00 2.32
497 498 3.176552 TGTGGTGGTTTCTTGCAATTG 57.823 42.857 0.00 0.00 0.00 2.32
498 499 2.762887 TGTGGTGGTTTCTTGCAATTGA 59.237 40.909 10.34 0.00 0.00 2.57
499 500 3.123050 GTGGTGGTTTCTTGCAATTGAC 58.877 45.455 10.34 1.02 0.00 3.18
500 501 3.030291 TGGTGGTTTCTTGCAATTGACT 58.970 40.909 10.34 0.00 0.00 3.41
501 502 3.068024 TGGTGGTTTCTTGCAATTGACTC 59.932 43.478 10.34 0.00 0.00 3.36
502 503 3.068024 GGTGGTTTCTTGCAATTGACTCA 59.932 43.478 10.34 0.00 0.00 3.41
503 504 4.262164 GGTGGTTTCTTGCAATTGACTCAT 60.262 41.667 10.34 0.00 0.00 2.90
651 652 5.507985 CCTTCTTTTCAAGGAATTTCTGCGT 60.508 40.000 0.00 0.00 45.41 5.24
756 757 1.932156 TAAGCCGGGCCATTGGACAT 61.932 55.000 17.02 0.00 27.52 3.06
757 758 3.530260 GCCGGGCCATTGGACATG 61.530 66.667 11.55 1.61 27.52 3.21
758 759 2.044053 CCGGGCCATTGGACATGT 60.044 61.111 11.55 0.00 27.52 3.21
759 760 1.225983 CCGGGCCATTGGACATGTA 59.774 57.895 11.55 0.00 27.52 2.29
760 761 1.101049 CCGGGCCATTGGACATGTAC 61.101 60.000 11.55 0.00 27.52 2.90
761 762 0.107214 CGGGCCATTGGACATGTACT 60.107 55.000 11.55 0.00 27.52 2.73
762 763 1.140052 CGGGCCATTGGACATGTACTA 59.860 52.381 11.55 1.26 27.52 1.82
763 764 2.224523 CGGGCCATTGGACATGTACTAT 60.225 50.000 11.55 4.13 27.52 2.12
764 765 3.007506 CGGGCCATTGGACATGTACTATA 59.992 47.826 11.55 0.00 27.52 1.31
765 766 4.324267 GGGCCATTGGACATGTACTATAC 58.676 47.826 11.55 3.14 27.52 1.47
766 767 4.202419 GGGCCATTGGACATGTACTATACA 60.202 45.833 11.55 0.00 43.80 2.29
767 768 4.755123 GGCCATTGGACATGTACTATACAC 59.245 45.833 10.05 0.35 42.23 2.90
769 770 4.447724 CCATTGGACATGTACTATACACGC 59.552 45.833 10.05 0.00 42.23 5.34
788 789 0.970427 CCCGTGGCAGGCCTTTTAAT 60.970 55.000 0.00 0.00 36.94 1.40
789 790 0.173255 CCGTGGCAGGCCTTTTAATG 59.827 55.000 0.00 0.00 36.94 1.90
791 792 1.555967 GTGGCAGGCCTTTTAATGGA 58.444 50.000 0.00 0.00 36.94 3.41
792 793 1.478105 GTGGCAGGCCTTTTAATGGAG 59.522 52.381 0.00 0.00 36.94 3.86
793 794 1.114627 GGCAGGCCTTTTAATGGAGG 58.885 55.000 0.00 0.00 36.09 4.30
796 797 2.807676 CAGGCCTTTTAATGGAGGTGT 58.192 47.619 0.00 0.00 35.42 4.16
802 803 1.816074 TTTAATGGAGGTGTCACGGC 58.184 50.000 0.00 0.00 0.00 5.68
804 805 1.906105 TAATGGAGGTGTCACGGCCC 61.906 60.000 0.00 5.44 0.00 5.80
806 807 3.948719 GGAGGTGTCACGGCCCAA 61.949 66.667 0.00 0.00 0.00 4.12
819 825 3.987220 CACGGCCCAATACAAAAGAAAAG 59.013 43.478 0.00 0.00 0.00 2.27
865 871 0.043637 ACCTTGTCTTCCCGGGGATA 59.956 55.000 23.50 6.34 0.00 2.59
965 971 1.210722 GGCAGAGAGGAAACCCTAAGG 59.789 57.143 0.00 0.00 40.04 2.69
1121 1127 2.280835 TGAGGCGCATCAGAGAGTT 58.719 52.632 22.47 0.00 0.00 3.01
1240 1246 2.094182 GCTGAGGACTACCGTCAAATGA 60.094 50.000 0.00 0.00 42.05 2.57
1259 1265 1.078143 GGGAGATGTGCTTTCGCCT 60.078 57.895 4.51 0.00 33.95 5.52
1260 1266 0.678048 GGGAGATGTGCTTTCGCCTT 60.678 55.000 4.51 0.00 33.95 4.35
1280 1286 4.493545 CCTTAATTTCGGTTCAATCGACGG 60.494 45.833 0.00 0.00 36.30 4.79
1457 1465 7.822334 ACTAGGATATGTCTGAGAACTAGATCG 59.178 40.741 0.00 0.00 32.98 3.69
1730 2549 7.769970 ACTAGGAGCAGGATATCGTAGTATTAC 59.230 40.741 5.93 0.00 42.34 1.89
1923 2743 3.518998 CCGATCCCTCTCACGCGT 61.519 66.667 5.58 5.58 0.00 6.01
1958 2778 1.484653 AGTAGATAATGCCCACACGCA 59.515 47.619 0.00 0.00 44.35 5.24
2287 3159 2.346803 GACGAGTTGCCATCTGCTTAA 58.653 47.619 0.00 0.00 42.00 1.85
2288 3160 2.939103 GACGAGTTGCCATCTGCTTAAT 59.061 45.455 0.00 0.00 42.00 1.40
2489 3363 1.473857 GCGCTGCAAAACATATGGCG 61.474 55.000 13.64 13.64 43.21 5.69
2789 3678 2.937799 TGGGCGTTAACATTTCCGTATC 59.062 45.455 6.39 0.00 0.00 2.24
3769 5117 0.961753 GAAAGTGCCAAGGGGAAGTG 59.038 55.000 0.00 0.00 35.59 3.16
3971 5319 6.406370 CCTACCTGTTGTACTTGATTCATCA 58.594 40.000 0.00 0.00 34.44 3.07
3972 5320 7.050377 CCTACCTGTTGTACTTGATTCATCAT 58.950 38.462 0.00 0.00 36.56 2.45
4137 5485 1.831580 AGCATCCTCCAGAACTTTGC 58.168 50.000 0.00 0.00 0.00 3.68
4220 5580 6.262944 TCGTGTACTTGTAGTCTGGAACTTAA 59.737 38.462 0.00 0.00 39.55 1.85
4225 5585 2.297880 TGTAGTCTGGAACTTAAGCGCA 59.702 45.455 11.47 0.00 39.55 6.09
4233 5593 1.329292 GAACTTAAGCGCACACACACA 59.671 47.619 11.47 0.00 0.00 3.72
4234 5594 0.655733 ACTTAAGCGCACACACACAC 59.344 50.000 11.47 0.00 0.00 3.82
4355 5715 0.909610 AGGCGTCTGGAAGGGATTGA 60.910 55.000 0.00 0.00 0.00 2.57
4392 5752 2.427506 GTGACAGAAGTGGATCAACCC 58.572 52.381 0.00 0.00 38.00 4.11
4394 5754 2.441375 TGACAGAAGTGGATCAACCCAA 59.559 45.455 0.00 0.00 38.06 4.12
4613 5973 7.334171 TGTTGAACCATGACTGTTATACATCAG 59.666 37.037 0.00 0.00 37.65 2.90
4678 6038 1.174712 AACACGCTGCCTGCAAATCT 61.175 50.000 0.00 0.00 43.06 2.40
4685 6045 1.324740 TGCCTGCAAATCTGGATGCC 61.325 55.000 0.00 0.00 41.87 4.40
4782 6142 6.772716 ACAACAAATATAATGGCTACCAGGAG 59.227 38.462 0.00 0.00 36.75 3.69
4809 6169 7.232534 TGAAGGCAAGTAAATATTTTCACCAGT 59.767 33.333 5.91 0.00 0.00 4.00
4810 6170 7.539034 AGGCAAGTAAATATTTTCACCAGTT 57.461 32.000 5.91 0.00 0.00 3.16
4811 6171 8.644374 AGGCAAGTAAATATTTTCACCAGTTA 57.356 30.769 5.91 0.00 0.00 2.24
4812 6172 9.084533 AGGCAAGTAAATATTTTCACCAGTTAA 57.915 29.630 5.91 0.00 0.00 2.01
4813 6173 9.135843 GGCAAGTAAATATTTTCACCAGTTAAC 57.864 33.333 5.91 0.00 0.00 2.01
4826 6186 6.008331 TCACCAGTTAACTTGCTAGAGACTA 58.992 40.000 5.07 0.00 0.00 2.59
4846 6206 6.384305 AGACTATTGCCATAGTAGAGGTGTTT 59.616 38.462 10.27 0.00 44.94 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.401766 CGCAAGGCAGGATGGTGAC 61.402 63.158 0.00 0.00 35.86 3.67
8 9 3.818787 GCGCAAGGCAGGATGGTG 61.819 66.667 0.30 0.00 42.87 4.17
26 27 3.470567 GAAGTGCAGACGACGGCG 61.471 66.667 10.39 10.39 39.90 6.46
27 28 3.470567 CGAAGTGCAGACGACGGC 61.471 66.667 2.81 2.81 37.70 5.68
28 29 1.660575 AACGAAGTGCAGACGACGG 60.661 57.895 12.73 0.00 45.00 4.79
29 30 1.206745 ACAACGAAGTGCAGACGACG 61.207 55.000 12.73 0.00 45.00 5.12
30 31 0.503117 GACAACGAAGTGCAGACGAC 59.497 55.000 12.73 0.00 45.00 4.34
31 32 0.596600 GGACAACGAAGTGCAGACGA 60.597 55.000 12.73 0.00 45.00 4.20
32 33 1.557443 GGGACAACGAAGTGCAGACG 61.557 60.000 0.00 0.00 45.00 4.18
33 34 1.228657 GGGGACAACGAAGTGCAGAC 61.229 60.000 0.00 0.00 45.00 3.51
34 35 1.070786 GGGGACAACGAAGTGCAGA 59.929 57.895 0.00 0.00 45.00 4.26
35 36 0.606401 ATGGGGACAACGAAGTGCAG 60.606 55.000 0.00 0.00 45.00 4.41
36 37 0.605319 GATGGGGACAACGAAGTGCA 60.605 55.000 0.00 0.00 45.00 4.57
37 38 0.605319 TGATGGGGACAACGAAGTGC 60.605 55.000 0.00 0.00 45.00 4.40
38 39 2.009774 GATGATGGGGACAACGAAGTG 58.990 52.381 0.00 0.00 45.00 3.16
47 48 0.466189 ATGGCGTTGATGATGGGGAC 60.466 55.000 0.00 0.00 0.00 4.46
48 49 0.179020 GATGGCGTTGATGATGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
49 50 0.466007 TGATGGCGTTGATGATGGGG 60.466 55.000 0.00 0.00 0.00 4.96
50 51 1.066002 GTTGATGGCGTTGATGATGGG 59.934 52.381 0.00 0.00 0.00 4.00
51 52 1.744522 TGTTGATGGCGTTGATGATGG 59.255 47.619 0.00 0.00 0.00 3.51
52 53 2.478370 GGTGTTGATGGCGTTGATGATG 60.478 50.000 0.00 0.00 0.00 3.07
53 54 1.745087 GGTGTTGATGGCGTTGATGAT 59.255 47.619 0.00 0.00 0.00 2.45
54 55 1.164411 GGTGTTGATGGCGTTGATGA 58.836 50.000 0.00 0.00 0.00 2.92
55 56 0.179192 CGGTGTTGATGGCGTTGATG 60.179 55.000 0.00 0.00 0.00 3.07
56 57 1.305219 CCGGTGTTGATGGCGTTGAT 61.305 55.000 0.00 0.00 0.00 2.57
57 58 1.963855 CCGGTGTTGATGGCGTTGA 60.964 57.895 0.00 0.00 0.00 3.18
58 59 2.560861 CCGGTGTTGATGGCGTTG 59.439 61.111 0.00 0.00 0.00 4.10
59 60 3.361977 GCCGGTGTTGATGGCGTT 61.362 61.111 1.90 0.00 39.30 4.84
63 64 2.751436 CCAGGCCGGTGTTGATGG 60.751 66.667 1.90 0.00 0.00 3.51
64 65 2.040544 GTCCAGGCCGGTGTTGATG 61.041 63.158 1.90 0.00 35.57 3.07
65 66 2.351276 GTCCAGGCCGGTGTTGAT 59.649 61.111 1.90 0.00 35.57 2.57
66 67 4.308458 CGTCCAGGCCGGTGTTGA 62.308 66.667 1.90 0.00 35.57 3.18
96 97 4.715523 TTGGCCTACCGGTGCTGC 62.716 66.667 19.93 16.53 39.70 5.25
97 98 2.746277 GTTGGCCTACCGGTGCTG 60.746 66.667 19.93 6.40 39.70 4.41
98 99 4.029809 GGTTGGCCTACCGGTGCT 62.030 66.667 20.90 0.00 39.70 4.40
99 100 4.029809 AGGTTGGCCTACCGGTGC 62.030 66.667 27.53 13.54 44.90 5.01
108 109 1.291184 GCGCATTTTTGAGGTTGGCC 61.291 55.000 0.30 0.00 0.00 5.36
109 110 0.599728 TGCGCATTTTTGAGGTTGGC 60.600 50.000 5.66 0.00 0.00 4.52
110 111 1.139163 GTGCGCATTTTTGAGGTTGG 58.861 50.000 15.91 0.00 0.00 3.77
111 112 0.777631 CGTGCGCATTTTTGAGGTTG 59.222 50.000 15.91 0.00 0.00 3.77
112 113 0.939106 GCGTGCGCATTTTTGAGGTT 60.939 50.000 15.91 0.00 41.49 3.50
113 114 1.371635 GCGTGCGCATTTTTGAGGT 60.372 52.632 15.91 0.00 41.49 3.85
114 115 1.067199 GAGCGTGCGCATTTTTGAGG 61.067 55.000 15.91 0.00 44.88 3.86
115 116 1.067199 GGAGCGTGCGCATTTTTGAG 61.067 55.000 15.91 0.41 44.88 3.02
116 117 1.081509 GGAGCGTGCGCATTTTTGA 60.082 52.632 15.91 0.00 44.88 2.69
117 118 2.427765 CGGAGCGTGCGCATTTTTG 61.428 57.895 15.91 2.50 44.88 2.44
118 119 2.126888 CGGAGCGTGCGCATTTTT 60.127 55.556 15.91 0.00 44.88 1.94
119 120 4.101790 CCGGAGCGTGCGCATTTT 62.102 61.111 15.91 0.82 44.88 1.82
132 133 4.689549 TTCGAGGAGGTGGCCGGA 62.690 66.667 5.05 0.00 0.00 5.14
133 134 4.452733 GTTCGAGGAGGTGGCCGG 62.453 72.222 0.00 0.00 0.00 6.13
134 135 4.452733 GGTTCGAGGAGGTGGCCG 62.453 72.222 0.00 0.00 0.00 6.13
135 136 4.097361 GGGTTCGAGGAGGTGGCC 62.097 72.222 0.00 0.00 0.00 5.36
136 137 4.097361 GGGGTTCGAGGAGGTGGC 62.097 72.222 0.00 0.00 0.00 5.01
137 138 3.771160 CGGGGTTCGAGGAGGTGG 61.771 72.222 0.00 0.00 42.43 4.61
138 139 2.995574 ACGGGGTTCGAGGAGGTG 60.996 66.667 0.00 0.00 42.43 4.00
139 140 2.679287 GACGGGGTTCGAGGAGGT 60.679 66.667 0.00 0.00 42.43 3.85
140 141 3.823330 CGACGGGGTTCGAGGAGG 61.823 72.222 0.00 0.00 41.78 4.30
141 142 4.493747 GCGACGGGGTTCGAGGAG 62.494 72.222 0.00 0.00 41.78 3.69
143 144 4.796231 CTGCGACGGGGTTCGAGG 62.796 72.222 0.00 0.00 41.78 4.63
147 148 3.379865 TATGGCTGCGACGGGGTTC 62.380 63.158 0.00 0.00 0.00 3.62
148 149 3.385749 CTATGGCTGCGACGGGGTT 62.386 63.158 0.00 0.00 0.00 4.11
149 150 3.849951 CTATGGCTGCGACGGGGT 61.850 66.667 0.00 0.00 0.00 4.95
152 153 4.529219 TGGCTATGGCTGCGACGG 62.529 66.667 0.00 0.00 38.73 4.79
153 154 2.963854 CTGGCTATGGCTGCGACG 60.964 66.667 0.00 0.00 38.73 5.12
154 155 2.590007 CCTGGCTATGGCTGCGAC 60.590 66.667 0.00 0.00 38.73 5.19
155 156 4.552365 GCCTGGCTATGGCTGCGA 62.552 66.667 12.43 0.00 46.38 5.10
161 162 1.067635 GTTGTTGTTGCCTGGCTATGG 60.068 52.381 21.03 0.00 0.00 2.74
162 163 1.612950 TGTTGTTGTTGCCTGGCTATG 59.387 47.619 21.03 0.00 0.00 2.23
163 164 1.993956 TGTTGTTGTTGCCTGGCTAT 58.006 45.000 21.03 0.00 0.00 2.97
164 165 1.407258 GTTGTTGTTGTTGCCTGGCTA 59.593 47.619 21.03 9.91 0.00 3.93
165 166 0.175531 GTTGTTGTTGTTGCCTGGCT 59.824 50.000 21.03 0.00 0.00 4.75
166 167 0.108424 TGTTGTTGTTGTTGCCTGGC 60.108 50.000 12.87 12.87 0.00 4.85
167 168 1.999024 GTTGTTGTTGTTGTTGCCTGG 59.001 47.619 0.00 0.00 0.00 4.45
168 169 2.681706 TGTTGTTGTTGTTGTTGCCTG 58.318 42.857 0.00 0.00 0.00 4.85
169 170 3.063485 GTTGTTGTTGTTGTTGTTGCCT 58.937 40.909 0.00 0.00 0.00 4.75
170 171 2.802816 TGTTGTTGTTGTTGTTGTTGCC 59.197 40.909 0.00 0.00 0.00 4.52
171 172 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
172 173 4.440946 CGTTGTTGTTGTTGTTGTTGTTG 58.559 39.130 0.00 0.00 0.00 3.33
173 174 3.491267 CCGTTGTTGTTGTTGTTGTTGTT 59.509 39.130 0.00 0.00 0.00 2.83
174 175 3.053455 CCGTTGTTGTTGTTGTTGTTGT 58.947 40.909 0.00 0.00 0.00 3.32
175 176 2.159907 GCCGTTGTTGTTGTTGTTGTTG 60.160 45.455 0.00 0.00 0.00 3.33
176 177 2.062519 GCCGTTGTTGTTGTTGTTGTT 58.937 42.857 0.00 0.00 0.00 2.83
177 178 1.704070 GCCGTTGTTGTTGTTGTTGT 58.296 45.000 0.00 0.00 0.00 3.32
178 179 0.637738 CGCCGTTGTTGTTGTTGTTG 59.362 50.000 0.00 0.00 0.00 3.33
179 180 1.073768 GCGCCGTTGTTGTTGTTGTT 61.074 50.000 0.00 0.00 0.00 2.83
180 181 1.515304 GCGCCGTTGTTGTTGTTGT 60.515 52.632 0.00 0.00 0.00 3.32
181 182 2.227568 GGCGCCGTTGTTGTTGTTG 61.228 57.895 12.58 0.00 0.00 3.33
182 183 2.103340 GGCGCCGTTGTTGTTGTT 59.897 55.556 12.58 0.00 0.00 2.83
183 184 3.119709 CTGGCGCCGTTGTTGTTGT 62.120 57.895 23.90 0.00 0.00 3.32
184 185 2.353376 CTGGCGCCGTTGTTGTTG 60.353 61.111 23.90 0.00 0.00 3.33
185 186 3.591835 CCTGGCGCCGTTGTTGTT 61.592 61.111 23.90 0.00 0.00 2.83
208 209 3.103911 CGTGAACTCGTCCGGCAC 61.104 66.667 0.00 0.00 0.00 5.01
209 210 3.141522 AACGTGAACTCGTCCGGCA 62.142 57.895 0.00 0.00 43.38 5.69
210 211 2.355481 AACGTGAACTCGTCCGGC 60.355 61.111 0.00 0.00 43.38 6.13
211 212 2.654912 GCAACGTGAACTCGTCCGG 61.655 63.158 0.00 0.00 43.38 5.14
212 213 1.213094 AAGCAACGTGAACTCGTCCG 61.213 55.000 0.00 0.00 43.38 4.79
213 214 0.507358 GAAGCAACGTGAACTCGTCC 59.493 55.000 0.00 0.00 43.38 4.79
214 215 0.158928 CGAAGCAACGTGAACTCGTC 59.841 55.000 0.00 0.00 43.38 4.20
215 216 1.213094 CCGAAGCAACGTGAACTCGT 61.213 55.000 0.00 0.00 46.19 4.18
216 217 1.487231 CCGAAGCAACGTGAACTCG 59.513 57.895 0.00 0.00 0.00 4.18
217 218 1.204312 GCCGAAGCAACGTGAACTC 59.796 57.895 0.00 0.00 39.53 3.01
218 219 3.330275 GCCGAAGCAACGTGAACT 58.670 55.556 0.00 0.00 39.53 3.01
228 229 1.821332 CAATCCCTCCTGCCGAAGC 60.821 63.158 0.00 0.00 40.48 3.86
229 230 0.462759 GACAATCCCTCCTGCCGAAG 60.463 60.000 0.00 0.00 0.00 3.79
230 231 1.602237 GACAATCCCTCCTGCCGAA 59.398 57.895 0.00 0.00 0.00 4.30
231 232 2.367202 GGACAATCCCTCCTGCCGA 61.367 63.158 0.00 0.00 0.00 5.54
232 233 2.190578 GGACAATCCCTCCTGCCG 59.809 66.667 0.00 0.00 0.00 5.69
233 234 1.077429 GTGGACAATCCCTCCTGCC 60.077 63.158 0.00 0.00 35.03 4.85
234 235 1.450312 CGTGGACAATCCCTCCTGC 60.450 63.158 0.00 0.00 35.03 4.85
235 236 1.221840 CCGTGGACAATCCCTCCTG 59.778 63.158 0.00 0.00 35.03 3.86
236 237 1.229529 ACCGTGGACAATCCCTCCT 60.230 57.895 0.00 0.00 35.03 3.69
237 238 1.078426 CACCGTGGACAATCCCTCC 60.078 63.158 0.00 0.00 35.03 4.30
238 239 1.078426 CCACCGTGGACAATCCCTC 60.078 63.158 12.68 0.00 40.96 4.30
239 240 1.846124 ACCACCGTGGACAATCCCT 60.846 57.895 24.80 0.00 40.96 4.20
240 241 1.674322 CACCACCGTGGACAATCCC 60.674 63.158 24.80 0.00 40.96 3.85
241 242 1.072505 ACACCACCGTGGACAATCC 59.927 57.895 24.80 0.00 44.86 3.01
242 243 1.852067 GCACACCACCGTGGACAATC 61.852 60.000 24.80 5.36 44.86 2.67
243 244 1.896660 GCACACCACCGTGGACAAT 60.897 57.895 24.80 0.00 44.86 2.71
244 245 2.515057 GCACACCACCGTGGACAA 60.515 61.111 24.80 0.00 44.86 3.18
245 246 3.113514 ATGCACACCACCGTGGACA 62.114 57.895 24.80 15.46 44.86 4.02
246 247 2.281484 ATGCACACCACCGTGGAC 60.281 61.111 24.80 10.54 44.86 4.02
247 248 2.281414 CATGCACACCACCGTGGA 60.281 61.111 24.80 1.01 44.86 4.02
248 249 2.594303 ACATGCACACCACCGTGG 60.594 61.111 16.47 16.47 44.86 4.94
249 250 2.638719 CACATGCACACCACCGTG 59.361 61.111 0.00 0.00 46.11 4.94
250 251 2.594303 CCACATGCACACCACCGT 60.594 61.111 0.00 0.00 0.00 4.83
251 252 3.364441 CCCACATGCACACCACCG 61.364 66.667 0.00 0.00 0.00 4.94
252 253 2.990967 CCCCACATGCACACCACC 60.991 66.667 0.00 0.00 0.00 4.61
253 254 2.990967 CCCCCACATGCACACCAC 60.991 66.667 0.00 0.00 0.00 4.16
254 255 3.505790 GACCCCCACATGCACACCA 62.506 63.158 0.00 0.00 0.00 4.17
255 256 2.676471 GACCCCCACATGCACACC 60.676 66.667 0.00 0.00 0.00 4.16
256 257 1.973281 CAGACCCCCACATGCACAC 60.973 63.158 0.00 0.00 0.00 3.82
257 258 1.499913 ATCAGACCCCCACATGCACA 61.500 55.000 0.00 0.00 0.00 4.57
258 259 0.323725 AATCAGACCCCCACATGCAC 60.324 55.000 0.00 0.00 0.00 4.57
259 260 0.323633 CAATCAGACCCCCACATGCA 60.324 55.000 0.00 0.00 0.00 3.96
260 261 1.669999 GCAATCAGACCCCCACATGC 61.670 60.000 0.00 0.00 0.00 4.06
261 262 0.033796 AGCAATCAGACCCCCACATG 60.034 55.000 0.00 0.00 0.00 3.21
262 263 0.706433 AAGCAATCAGACCCCCACAT 59.294 50.000 0.00 0.00 0.00 3.21
263 264 0.482446 AAAGCAATCAGACCCCCACA 59.518 50.000 0.00 0.00 0.00 4.17
264 265 1.273327 CAAAAGCAATCAGACCCCCAC 59.727 52.381 0.00 0.00 0.00 4.61
265 266 1.133199 ACAAAAGCAATCAGACCCCCA 60.133 47.619 0.00 0.00 0.00 4.96
266 267 1.632589 ACAAAAGCAATCAGACCCCC 58.367 50.000 0.00 0.00 0.00 5.40
267 268 3.751479 AAACAAAAGCAATCAGACCCC 57.249 42.857 0.00 0.00 0.00 4.95
286 287 7.504926 ACACATACACCCCTAGATCTAAAAA 57.495 36.000 3.57 0.00 0.00 1.94
287 288 7.504926 AACACATACACCCCTAGATCTAAAA 57.495 36.000 3.57 0.00 0.00 1.52
288 289 8.792830 ATAACACATACACCCCTAGATCTAAA 57.207 34.615 3.57 0.00 0.00 1.85
289 290 8.792830 AATAACACATACACCCCTAGATCTAA 57.207 34.615 3.57 0.00 0.00 2.10
290 291 8.792830 AAATAACACATACACCCCTAGATCTA 57.207 34.615 1.69 1.69 0.00 1.98
291 292 7.691993 AAATAACACATACACCCCTAGATCT 57.308 36.000 0.00 0.00 0.00 2.75
292 293 8.747538 AAAAATAACACATACACCCCTAGATC 57.252 34.615 0.00 0.00 0.00 2.75
318 319 9.859427 CCAGATTGTAAGAAATTGATTTAGCAA 57.141 29.630 0.00 0.00 0.00 3.91
319 320 7.975616 GCCAGATTGTAAGAAATTGATTTAGCA 59.024 33.333 0.00 0.00 0.00 3.49
320 321 7.436376 GGCCAGATTGTAAGAAATTGATTTAGC 59.564 37.037 0.00 0.00 0.00 3.09
321 322 7.922811 GGGCCAGATTGTAAGAAATTGATTTAG 59.077 37.037 4.39 0.00 0.00 1.85
322 323 7.147742 GGGGCCAGATTGTAAGAAATTGATTTA 60.148 37.037 4.39 0.00 0.00 1.40
323 324 6.352137 GGGGCCAGATTGTAAGAAATTGATTT 60.352 38.462 4.39 0.00 0.00 2.17
324 325 5.129320 GGGGCCAGATTGTAAGAAATTGATT 59.871 40.000 4.39 0.00 0.00 2.57
325 326 4.651045 GGGGCCAGATTGTAAGAAATTGAT 59.349 41.667 4.39 0.00 0.00 2.57
326 327 4.023291 GGGGCCAGATTGTAAGAAATTGA 58.977 43.478 4.39 0.00 0.00 2.57
327 328 3.768757 TGGGGCCAGATTGTAAGAAATTG 59.231 43.478 4.39 0.00 0.00 2.32
328 329 3.769300 GTGGGGCCAGATTGTAAGAAATT 59.231 43.478 4.39 0.00 0.00 1.82
329 330 3.011708 AGTGGGGCCAGATTGTAAGAAAT 59.988 43.478 4.39 0.00 0.00 2.17
330 331 2.378547 AGTGGGGCCAGATTGTAAGAAA 59.621 45.455 4.39 0.00 0.00 2.52
331 332 1.992557 AGTGGGGCCAGATTGTAAGAA 59.007 47.619 4.39 0.00 0.00 2.52
332 333 1.668826 AGTGGGGCCAGATTGTAAGA 58.331 50.000 4.39 0.00 0.00 2.10
333 334 2.094675 CAAGTGGGGCCAGATTGTAAG 58.905 52.381 4.39 0.00 0.00 2.34
334 335 1.427368 ACAAGTGGGGCCAGATTGTAA 59.573 47.619 15.26 0.00 36.15 2.41
335 336 1.072266 ACAAGTGGGGCCAGATTGTA 58.928 50.000 15.26 0.00 36.15 2.41
336 337 1.072266 TACAAGTGGGGCCAGATTGT 58.928 50.000 19.15 19.15 39.15 2.71
337 338 2.094675 CTTACAAGTGGGGCCAGATTG 58.905 52.381 4.39 9.08 32.96 2.67
338 339 1.992557 TCTTACAAGTGGGGCCAGATT 59.007 47.619 4.39 0.00 0.00 2.40
339 340 1.668826 TCTTACAAGTGGGGCCAGAT 58.331 50.000 4.39 0.00 0.00 2.90
340 341 1.440618 TTCTTACAAGTGGGGCCAGA 58.559 50.000 4.39 0.00 0.00 3.86
341 342 2.162681 CTTTCTTACAAGTGGGGCCAG 58.837 52.381 4.39 0.00 0.00 4.85
342 343 1.497286 ACTTTCTTACAAGTGGGGCCA 59.503 47.619 4.39 0.00 35.57 5.36
343 344 1.886542 CACTTTCTTACAAGTGGGGCC 59.113 52.381 0.00 0.00 46.84 5.80
349 350 7.309805 GGCCCATTTAATCACTTTCTTACAAGT 60.310 37.037 0.00 0.00 37.49 3.16
350 351 7.035612 GGCCCATTTAATCACTTTCTTACAAG 58.964 38.462 0.00 0.00 0.00 3.16
351 352 6.495181 TGGCCCATTTAATCACTTTCTTACAA 59.505 34.615 0.00 0.00 0.00 2.41
352 353 6.013379 TGGCCCATTTAATCACTTTCTTACA 58.987 36.000 0.00 0.00 0.00 2.41
353 354 6.524101 TGGCCCATTTAATCACTTTCTTAC 57.476 37.500 0.00 0.00 0.00 2.34
354 355 7.546250 TTTGGCCCATTTAATCACTTTCTTA 57.454 32.000 0.00 0.00 0.00 2.10
355 356 6.432403 TTTGGCCCATTTAATCACTTTCTT 57.568 33.333 0.00 0.00 0.00 2.52
356 357 6.213195 TGATTTGGCCCATTTAATCACTTTCT 59.787 34.615 0.00 0.00 33.41 2.52
357 358 6.313658 GTGATTTGGCCCATTTAATCACTTTC 59.686 38.462 23.47 6.07 46.67 2.62
358 359 6.172630 GTGATTTGGCCCATTTAATCACTTT 58.827 36.000 23.47 0.00 46.67 2.66
359 360 5.733676 GTGATTTGGCCCATTTAATCACTT 58.266 37.500 23.47 0.00 46.67 3.16
360 361 5.343307 GTGATTTGGCCCATTTAATCACT 57.657 39.130 23.47 0.00 46.67 3.41
362 363 3.454082 GGGTGATTTGGCCCATTTAATCA 59.546 43.478 0.00 5.41 44.23 2.57
363 364 3.492482 CGGGTGATTTGGCCCATTTAATC 60.492 47.826 0.00 2.65 45.07 1.75
364 365 2.433970 CGGGTGATTTGGCCCATTTAAT 59.566 45.455 0.00 0.00 45.07 1.40
365 366 1.827969 CGGGTGATTTGGCCCATTTAA 59.172 47.619 0.00 0.00 45.07 1.52
366 367 1.272760 ACGGGTGATTTGGCCCATTTA 60.273 47.619 0.00 0.00 45.07 1.40
367 368 0.544120 ACGGGTGATTTGGCCCATTT 60.544 50.000 0.00 0.00 45.07 2.32
368 369 0.544120 AACGGGTGATTTGGCCCATT 60.544 50.000 0.00 0.00 45.07 3.16
369 370 0.970427 GAACGGGTGATTTGGCCCAT 60.970 55.000 0.00 0.00 45.07 4.00
370 371 1.605165 GAACGGGTGATTTGGCCCA 60.605 57.895 0.00 0.00 45.07 5.36
371 372 1.595093 CTGAACGGGTGATTTGGCCC 61.595 60.000 0.00 0.00 41.45 5.80
372 373 0.893727 ACTGAACGGGTGATTTGGCC 60.894 55.000 0.00 0.00 0.00 5.36
373 374 0.240945 CACTGAACGGGTGATTTGGC 59.759 55.000 0.00 0.00 36.89 4.52
374 375 0.240945 GCACTGAACGGGTGATTTGG 59.759 55.000 0.00 0.00 36.89 3.28
375 376 1.238439 AGCACTGAACGGGTGATTTG 58.762 50.000 0.00 0.00 36.89 2.32
376 377 1.981256 AAGCACTGAACGGGTGATTT 58.019 45.000 0.00 0.00 39.77 2.17
377 378 1.981256 AAAGCACTGAACGGGTGATT 58.019 45.000 0.00 0.00 43.67 2.57
378 379 1.981256 AAAAGCACTGAACGGGTGAT 58.019 45.000 0.00 0.00 36.89 3.06
379 380 1.403679 CAAAAAGCACTGAACGGGTGA 59.596 47.619 0.00 0.00 36.89 4.02
380 381 1.838913 CAAAAAGCACTGAACGGGTG 58.161 50.000 0.00 0.00 37.70 4.61
381 382 0.102300 GCAAAAAGCACTGAACGGGT 59.898 50.000 0.00 0.00 44.79 5.28
382 383 2.885502 GCAAAAAGCACTGAACGGG 58.114 52.632 0.00 0.00 44.79 5.28
392 393 7.412137 AATCTGTTAAGTCATTGCAAAAAGC 57.588 32.000 1.71 0.00 45.96 3.51
393 394 9.853921 GAAAATCTGTTAAGTCATTGCAAAAAG 57.146 29.630 1.71 0.00 0.00 2.27
394 395 8.825745 GGAAAATCTGTTAAGTCATTGCAAAAA 58.174 29.630 1.71 0.00 0.00 1.94
395 396 7.168972 CGGAAAATCTGTTAAGTCATTGCAAAA 59.831 33.333 1.71 0.00 0.00 2.44
396 397 6.640499 CGGAAAATCTGTTAAGTCATTGCAAA 59.360 34.615 1.71 0.00 0.00 3.68
397 398 6.148948 CGGAAAATCTGTTAAGTCATTGCAA 58.851 36.000 0.00 0.00 0.00 4.08
398 399 5.335583 CCGGAAAATCTGTTAAGTCATTGCA 60.336 40.000 0.00 0.00 0.00 4.08
399 400 5.095490 CCGGAAAATCTGTTAAGTCATTGC 58.905 41.667 0.00 0.00 0.00 3.56
400 401 6.086222 CACCGGAAAATCTGTTAAGTCATTG 58.914 40.000 9.46 0.00 0.00 2.82
401 402 5.768164 ACACCGGAAAATCTGTTAAGTCATT 59.232 36.000 9.46 0.00 0.00 2.57
402 403 5.313712 ACACCGGAAAATCTGTTAAGTCAT 58.686 37.500 9.46 0.00 0.00 3.06
403 404 4.710324 ACACCGGAAAATCTGTTAAGTCA 58.290 39.130 9.46 0.00 0.00 3.41
404 405 5.684550 AACACCGGAAAATCTGTTAAGTC 57.315 39.130 9.46 0.00 0.00 3.01
405 406 6.320418 AGAAAACACCGGAAAATCTGTTAAGT 59.680 34.615 9.46 0.00 0.00 2.24
406 407 6.636850 CAGAAAACACCGGAAAATCTGTTAAG 59.363 38.462 9.46 0.00 0.00 1.85
407 408 6.500041 CAGAAAACACCGGAAAATCTGTTAA 58.500 36.000 9.46 0.00 0.00 2.01
408 409 5.506649 GCAGAAAACACCGGAAAATCTGTTA 60.507 40.000 9.46 0.00 36.18 2.41
409 410 4.736464 GCAGAAAACACCGGAAAATCTGTT 60.736 41.667 9.46 3.82 36.18 3.16
410 411 3.243401 GCAGAAAACACCGGAAAATCTGT 60.243 43.478 9.46 0.00 36.18 3.41
411 412 3.243367 TGCAGAAAACACCGGAAAATCTG 60.243 43.478 9.46 15.59 36.71 2.90
412 413 2.955660 TGCAGAAAACACCGGAAAATCT 59.044 40.909 9.46 1.69 0.00 2.40
413 414 3.363341 TGCAGAAAACACCGGAAAATC 57.637 42.857 9.46 0.00 0.00 2.17
414 415 3.453424 GTTGCAGAAAACACCGGAAAAT 58.547 40.909 9.46 0.00 0.00 1.82
415 416 2.732597 CGTTGCAGAAAACACCGGAAAA 60.733 45.455 9.46 0.00 0.00 2.29
416 417 1.202200 CGTTGCAGAAAACACCGGAAA 60.202 47.619 9.46 0.00 0.00 3.13
417 418 0.378962 CGTTGCAGAAAACACCGGAA 59.621 50.000 9.46 0.00 0.00 4.30
418 419 1.440938 CCGTTGCAGAAAACACCGGA 61.441 55.000 9.46 0.00 44.97 5.14
419 420 1.008995 CCGTTGCAGAAAACACCGG 60.009 57.895 0.00 0.00 36.74 5.28
420 421 0.591170 ATCCGTTGCAGAAAACACCG 59.409 50.000 0.00 0.00 0.00 4.94
421 422 2.793278 AATCCGTTGCAGAAAACACC 57.207 45.000 0.00 0.00 0.00 4.16
422 423 3.662186 CGTTAATCCGTTGCAGAAAACAC 59.338 43.478 0.00 0.00 0.00 3.32
423 424 3.560481 TCGTTAATCCGTTGCAGAAAACA 59.440 39.130 0.00 0.00 0.00 2.83
424 425 4.136517 TCGTTAATCCGTTGCAGAAAAC 57.863 40.909 0.00 0.00 0.00 2.43
425 426 3.810941 ACTCGTTAATCCGTTGCAGAAAA 59.189 39.130 0.00 0.00 0.00 2.29
426 427 3.395639 ACTCGTTAATCCGTTGCAGAAA 58.604 40.909 0.00 0.00 0.00 2.52
427 428 3.034721 ACTCGTTAATCCGTTGCAGAA 57.965 42.857 0.00 0.00 0.00 3.02
428 429 2.734606 CAACTCGTTAATCCGTTGCAGA 59.265 45.455 0.00 0.00 31.62 4.26
429 430 2.159707 CCAACTCGTTAATCCGTTGCAG 60.160 50.000 0.00 0.00 36.36 4.41
430 431 1.801771 CCAACTCGTTAATCCGTTGCA 59.198 47.619 0.00 0.00 36.36 4.08
431 432 1.802365 ACCAACTCGTTAATCCGTTGC 59.198 47.619 0.00 0.00 36.36 4.17
432 433 2.158841 CCACCAACTCGTTAATCCGTTG 59.841 50.000 0.00 0.00 37.18 4.10
433 434 2.224354 ACCACCAACTCGTTAATCCGTT 60.224 45.455 0.00 0.00 0.00 4.44
434 435 1.345415 ACCACCAACTCGTTAATCCGT 59.655 47.619 0.00 0.00 0.00 4.69
435 436 2.088950 ACCACCAACTCGTTAATCCG 57.911 50.000 0.00 0.00 0.00 4.18
436 437 3.189910 GGAAACCACCAACTCGTTAATCC 59.810 47.826 0.00 0.00 0.00 3.01
437 438 4.070009 AGGAAACCACCAACTCGTTAATC 58.930 43.478 0.00 0.00 0.00 1.75
438 439 3.818773 CAGGAAACCACCAACTCGTTAAT 59.181 43.478 0.00 0.00 0.00 1.40
439 440 3.207778 CAGGAAACCACCAACTCGTTAA 58.792 45.455 0.00 0.00 0.00 2.01
440 441 2.841215 CAGGAAACCACCAACTCGTTA 58.159 47.619 0.00 0.00 0.00 3.18
441 442 1.675552 CAGGAAACCACCAACTCGTT 58.324 50.000 0.00 0.00 0.00 3.85
442 443 0.818040 GCAGGAAACCACCAACTCGT 60.818 55.000 0.00 0.00 0.00 4.18
443 444 0.817634 TGCAGGAAACCACCAACTCG 60.818 55.000 0.00 0.00 0.00 4.18
444 445 1.398692 TTGCAGGAAACCACCAACTC 58.601 50.000 0.00 0.00 0.00 3.01
445 446 1.480545 GTTTGCAGGAAACCACCAACT 59.519 47.619 6.26 0.00 38.45 3.16
446 447 1.934589 GTTTGCAGGAAACCACCAAC 58.065 50.000 6.26 0.00 38.45 3.77
453 454 0.521735 CGGCTAGGTTTGCAGGAAAC 59.478 55.000 8.99 8.99 42.97 2.78
454 455 1.241315 GCGGCTAGGTTTGCAGGAAA 61.241 55.000 0.00 0.00 0.00 3.13
455 456 1.674322 GCGGCTAGGTTTGCAGGAA 60.674 57.895 0.00 0.00 0.00 3.36
456 457 2.046314 GCGGCTAGGTTTGCAGGA 60.046 61.111 0.00 0.00 0.00 3.86
457 458 1.523154 TTTGCGGCTAGGTTTGCAGG 61.523 55.000 0.00 0.00 38.75 4.85
458 459 0.527565 ATTTGCGGCTAGGTTTGCAG 59.472 50.000 0.00 0.00 38.75 4.41
459 460 0.243365 CATTTGCGGCTAGGTTTGCA 59.757 50.000 0.00 0.00 35.15 4.08
460 461 0.243636 ACATTTGCGGCTAGGTTTGC 59.756 50.000 0.00 0.00 0.00 3.68
461 462 1.402720 CCACATTTGCGGCTAGGTTTG 60.403 52.381 0.00 0.00 0.00 2.93
462 463 0.887933 CCACATTTGCGGCTAGGTTT 59.112 50.000 0.00 0.00 0.00 3.27
463 464 0.251165 ACCACATTTGCGGCTAGGTT 60.251 50.000 0.00 0.00 0.00 3.50
464 465 0.960364 CACCACATTTGCGGCTAGGT 60.960 55.000 0.00 0.00 0.00 3.08
465 466 1.656818 CCACCACATTTGCGGCTAGG 61.657 60.000 0.00 0.00 0.00 3.02
466 467 0.960364 ACCACCACATTTGCGGCTAG 60.960 55.000 0.00 0.00 0.00 3.42
467 468 0.538516 AACCACCACATTTGCGGCTA 60.539 50.000 0.00 0.00 0.00 3.93
468 469 1.398958 AAACCACCACATTTGCGGCT 61.399 50.000 0.00 0.00 0.00 5.52
469 470 0.943835 GAAACCACCACATTTGCGGC 60.944 55.000 0.00 0.00 0.00 6.53
470 471 0.673437 AGAAACCACCACATTTGCGG 59.327 50.000 0.00 0.00 0.00 5.69
471 472 2.126467 CAAGAAACCACCACATTTGCG 58.874 47.619 0.00 0.00 0.00 4.85
472 473 1.866601 GCAAGAAACCACCACATTTGC 59.133 47.619 0.00 0.00 33.64 3.68
473 474 3.176552 TGCAAGAAACCACCACATTTG 57.823 42.857 0.00 0.00 0.00 2.32
474 475 3.902881 TTGCAAGAAACCACCACATTT 57.097 38.095 0.00 0.00 0.00 2.32
475 476 4.128643 CAATTGCAAGAAACCACCACATT 58.871 39.130 4.94 0.00 0.00 2.71
476 477 3.387374 TCAATTGCAAGAAACCACCACAT 59.613 39.130 4.94 0.00 0.00 3.21
477 478 2.762887 TCAATTGCAAGAAACCACCACA 59.237 40.909 4.94 0.00 0.00 4.17
478 479 3.123050 GTCAATTGCAAGAAACCACCAC 58.877 45.455 4.94 0.00 0.00 4.16
479 480 3.030291 AGTCAATTGCAAGAAACCACCA 58.970 40.909 4.94 0.00 0.00 4.17
480 481 3.068024 TGAGTCAATTGCAAGAAACCACC 59.932 43.478 4.94 0.00 0.00 4.61
481 482 4.305989 TGAGTCAATTGCAAGAAACCAC 57.694 40.909 4.94 1.43 0.00 4.16
482 483 5.534207 AATGAGTCAATTGCAAGAAACCA 57.466 34.783 4.94 3.91 0.00 3.67
483 484 6.703165 AGAAAATGAGTCAATTGCAAGAAACC 59.297 34.615 4.94 0.00 0.00 3.27
484 485 7.223387 ACAGAAAATGAGTCAATTGCAAGAAAC 59.777 33.333 4.94 2.49 0.00 2.78
485 486 7.223193 CACAGAAAATGAGTCAATTGCAAGAAA 59.777 33.333 4.94 0.00 0.00 2.52
486 487 6.698329 CACAGAAAATGAGTCAATTGCAAGAA 59.302 34.615 4.94 0.00 0.00 2.52
487 488 6.210796 CACAGAAAATGAGTCAATTGCAAGA 58.789 36.000 4.94 0.00 0.00 3.02
488 489 5.107607 GCACAGAAAATGAGTCAATTGCAAG 60.108 40.000 4.94 0.00 0.00 4.01
489 490 4.746115 GCACAGAAAATGAGTCAATTGCAA 59.254 37.500 0.00 0.00 0.00 4.08
490 491 4.202131 TGCACAGAAAATGAGTCAATTGCA 60.202 37.500 0.00 0.00 0.00 4.08
491 492 4.300803 TGCACAGAAAATGAGTCAATTGC 58.699 39.130 0.00 0.00 0.00 3.56
492 493 7.971722 TGATATGCACAGAAAATGAGTCAATTG 59.028 33.333 0.00 0.00 0.00 2.32
493 494 8.058667 TGATATGCACAGAAAATGAGTCAATT 57.941 30.769 0.00 0.00 0.00 2.32
494 495 7.634671 TGATATGCACAGAAAATGAGTCAAT 57.365 32.000 0.00 0.00 0.00 2.57
495 496 7.040548 TGTTGATATGCACAGAAAATGAGTCAA 60.041 33.333 0.00 0.00 0.00 3.18
496 497 6.430616 TGTTGATATGCACAGAAAATGAGTCA 59.569 34.615 0.00 0.00 0.00 3.41
497 498 6.744537 GTGTTGATATGCACAGAAAATGAGTC 59.255 38.462 0.00 0.00 35.81 3.36
498 499 6.432162 AGTGTTGATATGCACAGAAAATGAGT 59.568 34.615 0.00 0.00 38.02 3.41
499 500 6.849502 AGTGTTGATATGCACAGAAAATGAG 58.150 36.000 0.00 0.00 38.02 2.90
500 501 6.822667 AGTGTTGATATGCACAGAAAATGA 57.177 33.333 0.00 0.00 38.02 2.57
501 502 7.201291 CGAAAGTGTTGATATGCACAGAAAATG 60.201 37.037 0.00 0.00 38.02 2.32
502 503 6.803320 CGAAAGTGTTGATATGCACAGAAAAT 59.197 34.615 0.00 0.00 38.02 1.82
503 504 6.142139 CGAAAGTGTTGATATGCACAGAAAA 58.858 36.000 0.00 0.00 38.02 2.29
614 615 4.264352 TGAAAAGAAGGGGATGCCTACAAT 60.264 41.667 2.19 0.00 0.00 2.71
651 652 1.938585 ACTCTTGATCAGGAACCGGA 58.061 50.000 9.46 0.00 0.00 5.14
756 757 0.740149 CCACGGGCGTGTATAGTACA 59.260 55.000 0.00 0.00 44.02 2.90
757 758 0.595825 GCCACGGGCGTGTATAGTAC 60.596 60.000 0.00 0.00 44.02 2.73
758 759 1.735360 GCCACGGGCGTGTATAGTA 59.265 57.895 0.00 0.00 44.02 1.82
759 760 2.497770 GCCACGGGCGTGTATAGT 59.502 61.111 0.00 0.00 44.02 2.12
769 770 0.970427 ATTAAAAGGCCTGCCACGGG 60.970 55.000 5.69 0.00 38.92 5.28
775 776 1.478105 CACCTCCATTAAAAGGCCTGC 59.522 52.381 5.69 0.00 36.01 4.85
778 779 2.492088 GTGACACCTCCATTAAAAGGCC 59.508 50.000 0.00 0.00 36.01 5.19
779 780 2.161609 CGTGACACCTCCATTAAAAGGC 59.838 50.000 0.00 0.00 36.01 4.35
780 781 2.747446 CCGTGACACCTCCATTAAAAGG 59.253 50.000 0.00 1.46 38.70 3.11
782 783 2.156098 GCCGTGACACCTCCATTAAAA 58.844 47.619 0.00 0.00 0.00 1.52
783 784 1.612199 GGCCGTGACACCTCCATTAAA 60.612 52.381 0.00 0.00 0.00 1.52
789 790 1.906105 TATTGGGCCGTGACACCTCC 61.906 60.000 0.00 1.13 0.00 4.30
791 792 1.298667 GTATTGGGCCGTGACACCT 59.701 57.895 0.00 0.00 0.00 4.00
792 793 0.606944 TTGTATTGGGCCGTGACACC 60.607 55.000 0.00 0.00 0.00 4.16
793 794 1.240256 TTTGTATTGGGCCGTGACAC 58.760 50.000 0.00 0.00 0.00 3.67
796 797 2.570415 TCTTTTGTATTGGGCCGTGA 57.430 45.000 0.00 0.00 0.00 4.35
802 803 8.499403 TGTTTTTCCTTTTCTTTTGTATTGGG 57.501 30.769 0.00 0.00 0.00 4.12
819 825 2.946990 TCCGACTCCAACTTGTTTTTCC 59.053 45.455 0.00 0.00 0.00 3.13
865 871 0.036875 CGAGGGGCTCTCACCTTTTT 59.963 55.000 15.97 0.00 42.55 1.94
965 971 3.003480 CTCAATCGACCAGGGTTTCTTC 58.997 50.000 0.00 0.00 0.00 2.87
1121 1127 1.456518 CTCCGGATCCTCTCCTGCA 60.457 63.158 3.57 0.00 42.47 4.41
1259 1265 3.371591 CCCGTCGATTGAACCGAAATTAA 59.628 43.478 0.00 0.00 37.81 1.40
1260 1266 2.931325 CCCGTCGATTGAACCGAAATTA 59.069 45.455 0.00 0.00 37.81 1.40
1280 1286 8.166422 TCAAGTGAAGAATTTCTTACTTTCCC 57.834 34.615 19.89 7.54 36.73 3.97
1457 1465 7.961325 AGTTCTCAGACTCTTTTCTCAAATC 57.039 36.000 0.00 0.00 0.00 2.17
1730 2549 6.211587 TGAATGCATCAAGGGTCTTTAATG 57.788 37.500 0.00 0.00 34.30 1.90
1836 2655 1.071699 TGTGTGGGCTGTTCCTCTTAC 59.928 52.381 0.00 0.00 34.39 2.34
1923 2743 3.153270 TACTTCGCCCACACGCACA 62.153 57.895 0.00 0.00 0.00 4.57
1958 2778 0.394762 TACGAGGCCTGACATACGGT 60.395 55.000 12.00 0.00 0.00 4.83
2287 3159 0.881118 CAACTGCCCTAACGTGCAAT 59.119 50.000 0.00 0.00 36.98 3.56
2288 3160 1.791103 GCAACTGCCCTAACGTGCAA 61.791 55.000 0.00 0.00 36.98 4.08
2489 3363 0.674895 CCACACCCAAGCTGCTAGTC 60.675 60.000 0.90 0.00 0.00 2.59
2789 3678 4.901849 TCATCCAGAGACCAGGGTAATAAG 59.098 45.833 0.00 0.00 0.00 1.73
2984 4084 2.327200 TGGAGAAGATCTGCATGCAG 57.673 50.000 36.80 36.80 39.98 4.41
3971 5319 2.779755 TACCACATCGGAGCAAACAT 57.220 45.000 0.00 0.00 38.63 2.71
3972 5320 2.779755 ATACCACATCGGAGCAAACA 57.220 45.000 0.00 0.00 38.63 2.83
4220 5580 2.435762 TGTGTGTGTGTGTGCGCT 60.436 55.556 9.73 0.00 0.00 5.92
4225 5585 1.598882 TGTGTTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
4233 5593 3.676291 AAAAGGCTTTGTGTTGTGTGT 57.324 38.095 14.19 0.00 0.00 3.72
4234 5594 4.566360 CCTAAAAAGGCTTTGTGTTGTGTG 59.434 41.667 14.19 0.00 0.00 3.82
4485 5845 4.219288 CCCTTCCTTTCCTCATCAAACAAG 59.781 45.833 0.00 0.00 0.00 3.16
4613 5973 4.576216 TCTATCACTAGCAGCTACTTGC 57.424 45.455 0.00 0.00 44.41 4.01
4678 6038 1.379916 CCCACTTCACTGGCATCCA 59.620 57.895 0.00 0.00 0.00 3.41
4685 6045 1.002888 AGATGTCTGCCCACTTCACTG 59.997 52.381 2.17 0.00 0.00 3.66
4782 6142 7.375053 TGGTGAAAATATTTACTTGCCTTCAC 58.625 34.615 13.38 13.38 40.27 3.18
4809 6169 6.294361 TGGCAATAGTCTCTAGCAAGTTAA 57.706 37.500 0.00 0.00 0.00 2.01
4810 6170 5.932619 TGGCAATAGTCTCTAGCAAGTTA 57.067 39.130 0.00 0.00 0.00 2.24
4811 6171 4.826274 TGGCAATAGTCTCTAGCAAGTT 57.174 40.909 0.00 0.00 0.00 2.66
4812 6172 5.600484 ACTATGGCAATAGTCTCTAGCAAGT 59.400 40.000 8.03 0.00 44.76 3.16
4813 6173 6.095432 ACTATGGCAATAGTCTCTAGCAAG 57.905 41.667 8.03 0.00 44.76 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.