Multiple sequence alignment - TraesCS2D01G404600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G404600 chr2D 100.000 3590 0 0 1 3590 518968248 518971837 0.000000e+00 6630
1 TraesCS2D01G404600 chr2B 90.440 3410 129 70 1 3312 611191218 611194528 0.000000e+00 4309
2 TraesCS2D01G404600 chr2A 93.543 2927 78 40 1 2869 663147776 663144903 0.000000e+00 4255
3 TraesCS2D01G404600 chr2A 85.556 360 39 10 1226 1579 10979572 10979924 7.320000e-97 364
4 TraesCS2D01G404600 chr2A 81.301 492 42 14 2863 3351 663144784 663144340 1.590000e-93 353
5 TraesCS2D01G404600 chr6A 89.286 1568 153 8 997 2552 456011562 456013126 0.000000e+00 1951
6 TraesCS2D01G404600 chr6B 88.953 1566 154 13 1001 2552 505683192 505681632 0.000000e+00 1916
7 TraesCS2D01G404600 chr6D 88.648 1568 163 8 997 2552 318453703 318455267 0.000000e+00 1895
8 TraesCS2D01G404600 chr3D 79.520 625 112 14 1892 2508 474655592 474656208 7.120000e-117 431
9 TraesCS2D01G404600 chr3D 76.504 698 114 37 1043 1718 474654761 474655430 5.740000e-88 335
10 TraesCS2D01G404600 chr3D 76.780 323 56 16 2090 2404 69906618 69906307 2.870000e-36 163
11 TraesCS2D01G404600 chr3A 79.200 625 114 14 1892 2508 617074295 617074911 1.540000e-113 420
12 TraesCS2D01G404600 chr3A 76.758 697 126 29 1043 1718 617073452 617074133 1.230000e-94 357
13 TraesCS2D01G404600 chr3B 79.073 626 113 16 1892 2508 631049171 631049787 7.170000e-112 414
14 TraesCS2D01G404600 chr3B 76.934 698 123 31 1043 1718 631048328 631049009 2.630000e-96 363
15 TraesCS2D01G404600 chr4B 84.161 423 41 9 1558 1971 86080378 86079973 1.560000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G404600 chr2D 518968248 518971837 3589 False 6630.0 6630 100.0000 1 3590 1 chr2D.!!$F1 3589
1 TraesCS2D01G404600 chr2B 611191218 611194528 3310 False 4309.0 4309 90.4400 1 3312 1 chr2B.!!$F1 3311
2 TraesCS2D01G404600 chr2A 663144340 663147776 3436 True 2304.0 4255 87.4220 1 3351 2 chr2A.!!$R1 3350
3 TraesCS2D01G404600 chr6A 456011562 456013126 1564 False 1951.0 1951 89.2860 997 2552 1 chr6A.!!$F1 1555
4 TraesCS2D01G404600 chr6B 505681632 505683192 1560 True 1916.0 1916 88.9530 1001 2552 1 chr6B.!!$R1 1551
5 TraesCS2D01G404600 chr6D 318453703 318455267 1564 False 1895.0 1895 88.6480 997 2552 1 chr6D.!!$F1 1555
6 TraesCS2D01G404600 chr3D 474654761 474656208 1447 False 383.0 431 78.0120 1043 2508 2 chr3D.!!$F1 1465
7 TraesCS2D01G404600 chr3A 617073452 617074911 1459 False 388.5 420 77.9790 1043 2508 2 chr3A.!!$F1 1465
8 TraesCS2D01G404600 chr3B 631048328 631049787 1459 False 388.5 414 78.0035 1043 2508 2 chr3B.!!$F1 1465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 366 0.032678 CACACTCAGAACCTGCGAGT 59.967 55.0 0.0 0.0 40.6 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2672 2856 4.112634 GTTTTCTTGCCACTTCCAACTTC 58.887 43.478 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.039134 CAACGCCTCCAACCCAAC 58.961 61.111 0.00 0.00 0.00 3.77
18 19 2.203437 AACGCCTCCAACCCAACC 60.203 61.111 0.00 0.00 0.00 3.77
19 20 3.063197 AACGCCTCCAACCCAACCA 62.063 57.895 0.00 0.00 0.00 3.67
63 64 3.231222 CGTAGGTACGTGCAGCTAC 57.769 57.895 14.80 14.80 44.13 3.58
64 65 0.448990 CGTAGGTACGTGCAGCTACA 59.551 55.000 21.36 0.00 45.55 2.74
65 66 1.531264 CGTAGGTACGTGCAGCTACAG 60.531 57.143 21.36 13.26 45.55 2.74
66 67 1.100510 TAGGTACGTGCAGCTACAGG 58.899 55.000 5.86 5.09 0.00 4.00
68 69 1.590147 GTACGTGCAGCTACAGGGT 59.410 57.895 11.17 4.00 0.00 4.34
69 70 0.736325 GTACGTGCAGCTACAGGGTG 60.736 60.000 11.17 0.00 45.31 4.61
75 76 2.846371 CAGCTACAGGGTGCTTGAC 58.154 57.895 0.00 0.00 37.44 3.18
76 77 0.674895 CAGCTACAGGGTGCTTGACC 60.675 60.000 0.00 0.00 45.28 4.02
77 78 0.838122 AGCTACAGGGTGCTTGACCT 60.838 55.000 0.00 0.00 45.33 3.85
126 132 1.146930 ACCCATGCATCTACCTGCG 59.853 57.895 0.00 0.00 45.30 5.18
129 138 0.659427 CCATGCATCTACCTGCGTTG 59.341 55.000 0.00 0.00 45.30 4.10
147 164 2.718073 GGCTTTGCCTGGCCTGATG 61.718 63.158 17.53 5.85 46.69 3.07
148 165 2.890371 CTTTGCCTGGCCTGATGC 59.110 61.111 17.53 7.56 40.16 3.91
210 232 2.283604 TCAGCTGGCGGTACCTCA 60.284 61.111 15.13 7.45 40.22 3.86
252 275 1.354040 CGTACGTACGTCCTCTCTGT 58.646 55.000 33.95 0.00 44.13 3.41
253 276 1.728971 CGTACGTACGTCCTCTCTGTT 59.271 52.381 33.95 0.00 44.13 3.16
254 277 2.473540 CGTACGTACGTCCTCTCTGTTG 60.474 54.545 33.95 6.95 44.13 3.33
255 278 0.240411 ACGTACGTCCTCTCTGTTGC 59.760 55.000 16.72 0.00 0.00 4.17
256 279 0.240145 CGTACGTCCTCTCTGTTGCA 59.760 55.000 7.22 0.00 0.00 4.08
257 280 1.135373 CGTACGTCCTCTCTGTTGCAT 60.135 52.381 7.22 0.00 0.00 3.96
258 281 2.263077 GTACGTCCTCTCTGTTGCATG 58.737 52.381 0.00 0.00 0.00 4.06
259 282 0.671781 ACGTCCTCTCTGTTGCATGC 60.672 55.000 11.82 11.82 0.00 4.06
260 283 0.671472 CGTCCTCTCTGTTGCATGCA 60.671 55.000 18.46 18.46 0.00 3.96
261 284 0.801251 GTCCTCTCTGTTGCATGCAC 59.199 55.000 22.58 16.00 0.00 4.57
294 317 3.012518 GCATGCTACACTGTTTCCTCAT 58.987 45.455 11.37 0.00 0.00 2.90
302 325 1.550524 ACTGTTTCCTCATGCGAGCTA 59.449 47.619 0.00 0.00 38.00 3.32
331 354 1.229975 CGAACCTGCATGCACACTCA 61.230 55.000 18.46 0.00 0.00 3.41
334 357 0.109153 ACCTGCATGCACACTCAGAA 59.891 50.000 18.46 0.00 0.00 3.02
339 362 0.520404 CATGCACACTCAGAACCTGC 59.480 55.000 0.00 0.00 0.00 4.85
341 364 1.300931 GCACACTCAGAACCTGCGA 60.301 57.895 0.00 0.00 0.00 5.10
342 365 1.287730 GCACACTCAGAACCTGCGAG 61.288 60.000 0.00 0.00 0.00 5.03
343 366 0.032678 CACACTCAGAACCTGCGAGT 59.967 55.000 0.00 0.00 40.60 4.18
345 368 1.961394 ACACTCAGAACCTGCGAGTAA 59.039 47.619 0.00 0.00 37.92 2.24
428 510 3.687102 CAGGGCGTACCACGGTCA 61.687 66.667 0.00 0.00 42.82 4.02
477 560 1.507141 GCGCATTGAATACCTCCCCG 61.507 60.000 0.30 0.00 0.00 5.73
500 583 0.251916 CCCCATTGTTAGGTGCGAGA 59.748 55.000 0.00 0.00 0.00 4.04
879 999 3.052909 ATCCATCGCCCTGCTTGCT 62.053 57.895 0.00 0.00 0.00 3.91
883 1003 3.729965 ATCGCCCTGCTTGCTCTCG 62.730 63.158 0.00 0.00 0.00 4.04
945 1065 1.492176 CCATATTGCACCACCTCTCCT 59.508 52.381 0.00 0.00 0.00 3.69
964 1084 0.609406 TGTCCTCACCTCACCTCTCG 60.609 60.000 0.00 0.00 0.00 4.04
966 1086 1.680651 CCTCACCTCACCTCTCGCT 60.681 63.158 0.00 0.00 0.00 4.93
1639 1777 2.154798 CTTCGCCACCTCCTTCGACA 62.155 60.000 0.00 0.00 0.00 4.35
2046 2217 2.185867 GCAGACGACCCGGCATTA 59.814 61.111 0.00 0.00 37.34 1.90
2600 2780 0.380733 TGCGCGTAGAAGATCGATGT 59.619 50.000 8.43 0.00 0.00 3.06
2607 2787 4.320275 GCGTAGAAGATCGATGTGTATGGA 60.320 45.833 0.54 0.00 0.00 3.41
2615 2795 2.676163 GATGTGTATGGACCCCCGGC 62.676 65.000 0.00 0.00 34.29 6.13
2807 2992 6.405278 TCCAAATCAGAAAGAAAGGGAAAC 57.595 37.500 0.00 0.00 0.00 2.78
2877 3187 4.219143 TGTACTGAACTACGTGTGACAG 57.781 45.455 0.00 10.28 38.71 3.51
2936 3246 2.109739 TGTTAATGCGCCGCCGATT 61.110 52.632 6.63 2.87 36.29 3.34
2937 3247 1.654137 GTTAATGCGCCGCCGATTG 60.654 57.895 6.63 0.00 36.29 2.67
2938 3248 2.109739 TTAATGCGCCGCCGATTGT 61.110 52.632 6.63 0.00 36.29 2.71
2949 3259 1.516453 CGCCGATTGTTGTTGTTGTTG 59.484 47.619 0.00 0.00 0.00 3.33
2954 3264 2.376808 TTGTTGTTGTTGTTGGCAGG 57.623 45.000 0.00 0.00 0.00 4.85
3002 3314 5.220043 GTGAAACATACAACTCGATCGAGTG 60.220 44.000 42.27 34.94 45.74 3.51
3003 3315 7.326030 GTGAAACATACAACTCGATCGAGTGA 61.326 42.308 42.27 31.59 45.74 3.41
3004 3316 8.569128 GTGAAACATACAACTCGATCGAGTGAT 61.569 40.741 42.27 34.24 45.74 3.06
3045 3360 4.204799 GTTGGTCCGGGCTTATTAATTCT 58.795 43.478 5.77 0.00 0.00 2.40
3046 3361 4.513406 TGGTCCGGGCTTATTAATTCTT 57.487 40.909 5.77 0.00 0.00 2.52
3047 3362 4.457466 TGGTCCGGGCTTATTAATTCTTC 58.543 43.478 5.77 0.00 0.00 2.87
3051 3366 2.812011 CGGGCTTATTAATTCTTCCCCG 59.188 50.000 13.56 13.56 46.65 5.73
3082 3397 2.006772 CGTCTTGATTGCCGGTAGC 58.993 57.895 1.90 0.00 44.14 3.58
3084 3399 1.291132 GTCTTGATTGCCGGTAGCTC 58.709 55.000 1.90 0.00 44.23 4.09
3088 3403 2.202932 ATTGCCGGTAGCTCGCTG 60.203 61.111 1.90 0.00 44.23 5.18
3102 3417 2.016961 CGCTGCTCATGGCGTTATT 58.983 52.632 5.98 0.00 45.34 1.40
3112 3427 1.295357 TGGCGTTATTGCACGAGGTG 61.295 55.000 0.00 0.00 43.15 4.00
3115 3430 0.999406 CGTTATTGCACGAGGTGGAG 59.001 55.000 0.00 0.00 43.15 3.86
3125 3441 2.034432 CACGAGGTGGAGATGAGATCAG 59.966 54.545 0.00 0.00 0.00 2.90
3128 3444 3.030291 GAGGTGGAGATGAGATCAGTGT 58.970 50.000 0.00 0.00 0.00 3.55
3173 3489 2.664851 TTTGAGGCTCGTGCACGG 60.665 61.111 36.41 27.12 41.91 4.94
3187 3518 4.405671 ACGGGACCGAGAGAGCGA 62.406 66.667 18.80 0.00 42.83 4.93
3194 3525 2.293677 GGACCGAGAGAGCGATTTGATA 59.706 50.000 0.00 0.00 0.00 2.15
3198 3529 3.304257 CGAGAGAGCGATTTGATAGTGG 58.696 50.000 0.00 0.00 0.00 4.00
3201 3532 3.320541 AGAGAGCGATTTGATAGTGGGAG 59.679 47.826 0.00 0.00 0.00 4.30
3204 3535 4.080863 AGAGCGATTTGATAGTGGGAGTTT 60.081 41.667 0.00 0.00 0.00 2.66
3211 3542 7.308589 CGATTTGATAGTGGGAGTTTCTTTGTT 60.309 37.037 0.00 0.00 0.00 2.83
3216 3547 2.623416 GTGGGAGTTTCTTTGTTGAGGG 59.377 50.000 0.00 0.00 0.00 4.30
3217 3548 2.512056 TGGGAGTTTCTTTGTTGAGGGA 59.488 45.455 0.00 0.00 0.00 4.20
3218 3549 3.149981 GGGAGTTTCTTTGTTGAGGGAG 58.850 50.000 0.00 0.00 0.00 4.30
3219 3550 3.435169 GGGAGTTTCTTTGTTGAGGGAGT 60.435 47.826 0.00 0.00 0.00 3.85
3220 3551 4.207955 GGAGTTTCTTTGTTGAGGGAGTT 58.792 43.478 0.00 0.00 0.00 3.01
3231 3562 4.221924 TGTTGAGGGAGTTCGATACATCAA 59.778 41.667 0.00 0.00 0.00 2.57
3238 3569 5.394224 GGGAGTTCGATACATCAAACTCTGA 60.394 44.000 17.99 0.00 45.54 3.27
3247 3580 3.584406 ACATCAAACTCTGATCCAGGACA 59.416 43.478 0.00 0.00 43.28 4.02
3257 3590 2.040145 TGATCCAGGACAGTGCATCAAA 59.960 45.455 0.00 0.00 0.00 2.69
3281 3614 8.635765 AAGAGGCAATACAAACTGATAAAGAA 57.364 30.769 0.00 0.00 0.00 2.52
3284 3617 9.860898 GAGGCAATACAAACTGATAAAGAATTT 57.139 29.630 0.00 0.00 43.42 1.82
3290 3623 7.186021 ACAAACTGATAAAGAATTTCGACGT 57.814 32.000 0.00 0.00 40.09 4.34
3297 3630 3.982576 AAGAATTTCGACGTGCCTTTT 57.017 38.095 0.00 0.00 0.00 2.27
3303 3636 2.163818 TCGACGTGCCTTTTCATTCT 57.836 45.000 0.00 0.00 0.00 2.40
3312 3645 5.865552 CGTGCCTTTTCATTCTCATTTGATT 59.134 36.000 0.00 0.00 0.00 2.57
3313 3646 7.028962 CGTGCCTTTTCATTCTCATTTGATTA 58.971 34.615 0.00 0.00 0.00 1.75
3314 3647 7.703621 CGTGCCTTTTCATTCTCATTTGATTAT 59.296 33.333 0.00 0.00 0.00 1.28
3315 3648 9.374838 GTGCCTTTTCATTCTCATTTGATTATT 57.625 29.630 0.00 0.00 0.00 1.40
3316 3649 9.947433 TGCCTTTTCATTCTCATTTGATTATTT 57.053 25.926 0.00 0.00 0.00 1.40
3333 3666 2.911819 TTTGATCATTTTCCGGTCGC 57.088 45.000 0.00 0.00 0.00 5.19
3346 3679 2.094575 TCCGGTCGCAAATTTATGTTCG 59.905 45.455 0.00 0.00 0.00 3.95
3351 3684 1.508725 CGCAAATTTATGTTCGCGAGC 59.491 47.619 16.69 16.69 45.17 5.03
3352 3685 2.785679 GCAAATTTATGTTCGCGAGCT 58.214 42.857 23.51 11.63 0.00 4.09
3353 3686 3.171277 GCAAATTTATGTTCGCGAGCTT 58.829 40.909 23.51 19.18 0.00 3.74
3354 3687 3.238342 GCAAATTTATGTTCGCGAGCTTC 59.762 43.478 23.51 9.69 0.00 3.86
3355 3688 4.651994 CAAATTTATGTTCGCGAGCTTCT 58.348 39.130 23.51 10.86 0.00 2.85
3356 3689 4.946784 AATTTATGTTCGCGAGCTTCTT 57.053 36.364 23.51 9.32 0.00 2.52
3357 3690 4.946784 ATTTATGTTCGCGAGCTTCTTT 57.053 36.364 23.51 3.71 0.00 2.52
3358 3691 4.742438 TTTATGTTCGCGAGCTTCTTTT 57.258 36.364 23.51 4.75 0.00 2.27
3359 3692 4.742438 TTATGTTCGCGAGCTTCTTTTT 57.258 36.364 23.51 3.16 0.00 1.94
3360 3693 2.663279 TGTTCGCGAGCTTCTTTTTC 57.337 45.000 23.51 0.37 0.00 2.29
3361 3694 1.937223 TGTTCGCGAGCTTCTTTTTCA 59.063 42.857 23.51 0.00 0.00 2.69
3362 3695 2.353269 TGTTCGCGAGCTTCTTTTTCAA 59.647 40.909 23.51 0.00 0.00 2.69
3363 3696 3.003275 TGTTCGCGAGCTTCTTTTTCAAT 59.997 39.130 23.51 0.00 0.00 2.57
3364 3697 3.896648 TCGCGAGCTTCTTTTTCAATT 57.103 38.095 3.71 0.00 0.00 2.32
3365 3698 5.144359 GTTCGCGAGCTTCTTTTTCAATTA 58.856 37.500 16.26 0.00 0.00 1.40
3366 3699 5.351233 TCGCGAGCTTCTTTTTCAATTAA 57.649 34.783 3.71 0.00 0.00 1.40
3367 3700 5.938322 TCGCGAGCTTCTTTTTCAATTAAT 58.062 33.333 3.71 0.00 0.00 1.40
3368 3701 7.067532 TCGCGAGCTTCTTTTTCAATTAATA 57.932 32.000 3.71 0.00 0.00 0.98
3369 3702 7.523219 TCGCGAGCTTCTTTTTCAATTAATAA 58.477 30.769 3.71 0.00 0.00 1.40
3370 3703 8.018520 TCGCGAGCTTCTTTTTCAATTAATAAA 58.981 29.630 3.71 0.00 0.00 1.40
3371 3704 8.306923 CGCGAGCTTCTTTTTCAATTAATAAAG 58.693 33.333 0.00 3.09 0.00 1.85
3372 3705 8.587111 GCGAGCTTCTTTTTCAATTAATAAAGG 58.413 33.333 8.05 0.00 0.00 3.11
3373 3706 9.076596 CGAGCTTCTTTTTCAATTAATAAAGGG 57.923 33.333 8.05 4.45 0.00 3.95
3374 3707 8.777865 AGCTTCTTTTTCAATTAATAAAGGGC 57.222 30.769 8.05 11.08 32.54 5.19
3375 3708 7.824289 AGCTTCTTTTTCAATTAATAAAGGGCC 59.176 33.333 0.00 0.00 32.65 5.80
3376 3709 7.065803 GCTTCTTTTTCAATTAATAAAGGGCCC 59.934 37.037 16.46 16.46 0.00 5.80
3377 3710 7.560796 TCTTTTTCAATTAATAAAGGGCCCA 57.439 32.000 27.56 2.74 0.00 5.36
3378 3711 7.390823 TCTTTTTCAATTAATAAAGGGCCCAC 58.609 34.615 27.56 0.00 0.00 4.61
3379 3712 6.688073 TTTTCAATTAATAAAGGGCCCACA 57.312 33.333 27.56 8.76 0.00 4.17
3380 3713 5.669164 TTCAATTAATAAAGGGCCCACAC 57.331 39.130 27.56 0.00 0.00 3.82
3381 3714 3.697045 TCAATTAATAAAGGGCCCACACG 59.303 43.478 27.56 0.33 0.00 4.49
3382 3715 2.131776 TTAATAAAGGGCCCACACGG 57.868 50.000 27.56 0.00 0.00 4.94
3391 3724 2.603171 CCCACACGGCCCCATTTT 60.603 61.111 0.00 0.00 0.00 1.82
3392 3725 2.213513 CCCACACGGCCCCATTTTT 61.214 57.895 0.00 0.00 0.00 1.94
3393 3726 0.900647 CCCACACGGCCCCATTTTTA 60.901 55.000 0.00 0.00 0.00 1.52
3394 3727 1.190643 CCACACGGCCCCATTTTTAT 58.809 50.000 0.00 0.00 0.00 1.40
3395 3728 1.552792 CCACACGGCCCCATTTTTATT 59.447 47.619 0.00 0.00 0.00 1.40
3396 3729 2.761208 CCACACGGCCCCATTTTTATTA 59.239 45.455 0.00 0.00 0.00 0.98
3397 3730 3.386402 CCACACGGCCCCATTTTTATTAT 59.614 43.478 0.00 0.00 0.00 1.28
3398 3731 4.367450 CACACGGCCCCATTTTTATTATG 58.633 43.478 0.00 0.00 0.00 1.90
3399 3732 4.098654 CACACGGCCCCATTTTTATTATGA 59.901 41.667 0.00 0.00 0.00 2.15
3400 3733 4.712337 ACACGGCCCCATTTTTATTATGAA 59.288 37.500 0.00 0.00 0.00 2.57
3401 3734 5.187967 ACACGGCCCCATTTTTATTATGAAA 59.812 36.000 0.00 0.00 0.00 2.69
3402 3735 6.126911 ACACGGCCCCATTTTTATTATGAAAT 60.127 34.615 0.00 0.00 0.00 2.17
3403 3736 6.202570 CACGGCCCCATTTTTATTATGAAATG 59.797 38.462 0.00 8.11 40.95 2.32
3404 3737 6.098982 ACGGCCCCATTTTTATTATGAAATGA 59.901 34.615 13.60 0.00 42.85 2.57
3405 3738 6.989169 CGGCCCCATTTTTATTATGAAATGAA 59.011 34.615 13.60 0.00 42.85 2.57
3406 3739 7.497249 CGGCCCCATTTTTATTATGAAATGAAA 59.503 33.333 13.60 0.00 42.85 2.69
3407 3740 9.183368 GGCCCCATTTTTATTATGAAATGAAAA 57.817 29.630 13.60 4.07 42.85 2.29
3422 3755 8.380743 TGAAATGAAAATGGAACTGAAAATGG 57.619 30.769 0.00 0.00 0.00 3.16
3423 3756 8.209584 TGAAATGAAAATGGAACTGAAAATGGA 58.790 29.630 0.00 0.00 0.00 3.41
3424 3757 8.611654 AAATGAAAATGGAACTGAAAATGGAG 57.388 30.769 0.00 0.00 0.00 3.86
3425 3758 6.729690 TGAAAATGGAACTGAAAATGGAGT 57.270 33.333 0.00 0.00 0.00 3.85
3426 3759 7.831691 TGAAAATGGAACTGAAAATGGAGTA 57.168 32.000 0.00 0.00 0.00 2.59
3427 3760 8.421249 TGAAAATGGAACTGAAAATGGAGTAT 57.579 30.769 0.00 0.00 0.00 2.12
3428 3761 8.306038 TGAAAATGGAACTGAAAATGGAGTATG 58.694 33.333 0.00 0.00 0.00 2.39
3429 3762 8.421249 AAAATGGAACTGAAAATGGAGTATGA 57.579 30.769 0.00 0.00 0.00 2.15
3430 3763 8.599624 AAATGGAACTGAAAATGGAGTATGAT 57.400 30.769 0.00 0.00 0.00 2.45
3431 3764 7.578310 ATGGAACTGAAAATGGAGTATGATG 57.422 36.000 0.00 0.00 0.00 3.07
3432 3765 5.357878 TGGAACTGAAAATGGAGTATGATGC 59.642 40.000 0.00 0.00 0.00 3.91
3433 3766 5.357878 GGAACTGAAAATGGAGTATGATGCA 59.642 40.000 0.00 0.00 0.00 3.96
3434 3767 6.127647 GGAACTGAAAATGGAGTATGATGCAA 60.128 38.462 0.00 0.00 0.00 4.08
3435 3768 6.199937 ACTGAAAATGGAGTATGATGCAAC 57.800 37.500 0.00 0.00 0.00 4.17
3436 3769 5.711506 ACTGAAAATGGAGTATGATGCAACA 59.288 36.000 0.00 0.00 0.00 3.33
3437 3770 6.127814 ACTGAAAATGGAGTATGATGCAACAG 60.128 38.462 2.25 0.00 0.00 3.16
3438 3771 4.644103 AAATGGAGTATGATGCAACAGC 57.356 40.909 2.25 0.00 0.00 4.40
3439 3772 2.042686 TGGAGTATGATGCAACAGCC 57.957 50.000 2.25 2.33 0.00 4.85
3440 3773 1.281577 TGGAGTATGATGCAACAGCCA 59.718 47.619 2.25 4.87 0.00 4.75
3441 3774 2.290832 TGGAGTATGATGCAACAGCCAA 60.291 45.455 2.25 0.00 0.00 4.52
3442 3775 2.754552 GGAGTATGATGCAACAGCCAAA 59.245 45.455 2.25 0.00 0.00 3.28
3443 3776 3.181493 GGAGTATGATGCAACAGCCAAAG 60.181 47.826 2.25 0.00 0.00 2.77
3444 3777 2.165030 AGTATGATGCAACAGCCAAAGC 59.835 45.455 2.25 0.00 40.32 3.51
3445 3778 0.970640 ATGATGCAACAGCCAAAGCA 59.029 45.000 2.25 0.00 43.56 3.91
3447 3780 3.826637 ATGCAACAGCCAAAGCATC 57.173 47.368 0.00 0.00 43.67 3.91
3448 3781 0.970640 ATGCAACAGCCAAAGCATCA 59.029 45.000 0.00 0.00 43.67 3.07
3449 3782 0.751452 TGCAACAGCCAAAGCATCAA 59.249 45.000 0.00 0.00 43.56 2.57
3450 3783 1.138464 TGCAACAGCCAAAGCATCAAA 59.862 42.857 0.00 0.00 43.56 2.69
3451 3784 2.211806 GCAACAGCCAAAGCATCAAAA 58.788 42.857 0.00 0.00 43.56 2.44
3452 3785 2.222445 GCAACAGCCAAAGCATCAAAAG 59.778 45.455 0.00 0.00 43.56 2.27
3453 3786 2.159327 ACAGCCAAAGCATCAAAAGC 57.841 45.000 0.00 0.00 43.56 3.51
3454 3787 1.413445 ACAGCCAAAGCATCAAAAGCA 59.587 42.857 0.00 0.00 43.56 3.91
3455 3788 2.158928 ACAGCCAAAGCATCAAAAGCAA 60.159 40.909 0.00 0.00 43.56 3.91
3456 3789 2.873472 CAGCCAAAGCATCAAAAGCAAA 59.127 40.909 0.00 0.00 43.56 3.68
3457 3790 3.312973 CAGCCAAAGCATCAAAAGCAAAA 59.687 39.130 0.00 0.00 43.56 2.44
3458 3791 3.946558 AGCCAAAGCATCAAAAGCAAAAA 59.053 34.783 0.00 0.00 43.56 1.94
3477 3810 5.483685 AAAAAGGAAAAGGTTAGGGCATC 57.516 39.130 0.00 0.00 0.00 3.91
3478 3811 4.404185 AAAGGAAAAGGTTAGGGCATCT 57.596 40.909 0.00 0.00 0.00 2.90
3479 3812 4.404185 AAGGAAAAGGTTAGGGCATCTT 57.596 40.909 0.00 0.00 0.00 2.40
3480 3813 3.969553 AGGAAAAGGTTAGGGCATCTTC 58.030 45.455 0.00 0.00 0.00 2.87
3481 3814 3.333680 AGGAAAAGGTTAGGGCATCTTCA 59.666 43.478 0.00 0.00 0.00 3.02
3482 3815 4.086457 GGAAAAGGTTAGGGCATCTTCAA 58.914 43.478 0.00 0.00 0.00 2.69
3483 3816 4.711846 GGAAAAGGTTAGGGCATCTTCAAT 59.288 41.667 0.00 0.00 0.00 2.57
3484 3817 5.394553 GGAAAAGGTTAGGGCATCTTCAATG 60.395 44.000 0.00 0.00 0.00 2.82
3485 3818 4.322057 AAGGTTAGGGCATCTTCAATGT 57.678 40.909 0.00 0.00 0.00 2.71
3486 3819 5.450818 AAGGTTAGGGCATCTTCAATGTA 57.549 39.130 0.00 0.00 0.00 2.29
3487 3820 5.041191 AGGTTAGGGCATCTTCAATGTAG 57.959 43.478 0.00 0.00 0.00 2.74
3488 3821 4.721776 AGGTTAGGGCATCTTCAATGTAGA 59.278 41.667 0.00 0.00 0.00 2.59
3489 3822 4.816925 GGTTAGGGCATCTTCAATGTAGAC 59.183 45.833 0.00 0.00 0.00 2.59
3490 3823 3.567478 AGGGCATCTTCAATGTAGACC 57.433 47.619 0.00 0.00 0.00 3.85
3491 3824 2.173569 AGGGCATCTTCAATGTAGACCC 59.826 50.000 7.27 7.27 31.28 4.46
3492 3825 2.576615 GGCATCTTCAATGTAGACCCC 58.423 52.381 0.00 0.00 0.00 4.95
3493 3826 2.173569 GGCATCTTCAATGTAGACCCCT 59.826 50.000 0.00 0.00 0.00 4.79
3494 3827 3.391296 GGCATCTTCAATGTAGACCCCTA 59.609 47.826 0.00 0.00 0.00 3.53
3495 3828 4.503991 GGCATCTTCAATGTAGACCCCTAG 60.504 50.000 0.00 0.00 0.00 3.02
3496 3829 4.345257 GCATCTTCAATGTAGACCCCTAGA 59.655 45.833 0.00 0.00 0.00 2.43
3497 3830 5.163301 GCATCTTCAATGTAGACCCCTAGAA 60.163 44.000 0.00 0.00 0.00 2.10
3498 3831 5.934402 TCTTCAATGTAGACCCCTAGAAC 57.066 43.478 0.00 0.00 0.00 3.01
3499 3832 4.401519 TCTTCAATGTAGACCCCTAGAACG 59.598 45.833 0.00 0.00 0.00 3.95
3500 3833 3.028850 TCAATGTAGACCCCTAGAACGG 58.971 50.000 0.00 0.00 0.00 4.44
3501 3834 3.028850 CAATGTAGACCCCTAGAACGGA 58.971 50.000 0.00 0.00 0.00 4.69
3502 3835 2.134789 TGTAGACCCCTAGAACGGAC 57.865 55.000 0.00 0.00 0.00 4.79
3503 3836 1.341383 TGTAGACCCCTAGAACGGACC 60.341 57.143 0.00 0.00 0.00 4.46
3504 3837 1.064091 GTAGACCCCTAGAACGGACCT 60.064 57.143 0.00 0.00 0.00 3.85
3505 3838 0.412640 AGACCCCTAGAACGGACCTT 59.587 55.000 0.00 0.00 0.00 3.50
3506 3839 0.822811 GACCCCTAGAACGGACCTTC 59.177 60.000 0.00 0.00 0.00 3.46
3507 3840 0.616964 ACCCCTAGAACGGACCTTCC 60.617 60.000 0.00 0.00 0.00 3.46
3508 3841 0.616679 CCCCTAGAACGGACCTTCCA 60.617 60.000 0.00 0.00 35.91 3.53
3509 3842 1.272807 CCCTAGAACGGACCTTCCAA 58.727 55.000 0.00 0.00 35.91 3.53
3510 3843 1.066358 CCCTAGAACGGACCTTCCAAC 60.066 57.143 0.00 0.00 35.91 3.77
3511 3844 1.066358 CCTAGAACGGACCTTCCAACC 60.066 57.143 0.00 0.00 35.91 3.77
3512 3845 1.621814 CTAGAACGGACCTTCCAACCA 59.378 52.381 0.00 0.00 35.91 3.67
3513 3846 1.064825 AGAACGGACCTTCCAACCAT 58.935 50.000 0.00 0.00 35.91 3.55
3514 3847 1.165270 GAACGGACCTTCCAACCATG 58.835 55.000 0.00 0.00 35.91 3.66
3515 3848 0.476771 AACGGACCTTCCAACCATGT 59.523 50.000 0.00 0.00 35.91 3.21
3516 3849 1.354101 ACGGACCTTCCAACCATGTA 58.646 50.000 0.00 0.00 35.91 2.29
3517 3850 1.002773 ACGGACCTTCCAACCATGTAC 59.997 52.381 0.00 0.00 35.91 2.90
3518 3851 1.677820 CGGACCTTCCAACCATGTACC 60.678 57.143 0.00 0.00 35.91 3.34
3519 3852 1.633945 GGACCTTCCAACCATGTACCT 59.366 52.381 0.00 0.00 36.28 3.08
3520 3853 2.355818 GGACCTTCCAACCATGTACCTC 60.356 54.545 0.00 0.00 36.28 3.85
3521 3854 2.304761 GACCTTCCAACCATGTACCTCA 59.695 50.000 0.00 0.00 0.00 3.86
3522 3855 2.714250 ACCTTCCAACCATGTACCTCAA 59.286 45.455 0.00 0.00 0.00 3.02
3523 3856 3.139397 ACCTTCCAACCATGTACCTCAAA 59.861 43.478 0.00 0.00 0.00 2.69
3524 3857 4.202673 ACCTTCCAACCATGTACCTCAAAT 60.203 41.667 0.00 0.00 0.00 2.32
3525 3858 4.158394 CCTTCCAACCATGTACCTCAAATG 59.842 45.833 0.00 0.00 0.00 2.32
3526 3859 4.380843 TCCAACCATGTACCTCAAATGT 57.619 40.909 0.00 0.00 0.00 2.71
3527 3860 4.331968 TCCAACCATGTACCTCAAATGTC 58.668 43.478 0.00 0.00 0.00 3.06
3528 3861 3.443681 CCAACCATGTACCTCAAATGTCC 59.556 47.826 0.00 0.00 0.00 4.02
3529 3862 2.985896 ACCATGTACCTCAAATGTCCG 58.014 47.619 0.00 0.00 0.00 4.79
3530 3863 1.670811 CCATGTACCTCAAATGTCCGC 59.329 52.381 0.00 0.00 0.00 5.54
3531 3864 2.355197 CATGTACCTCAAATGTCCGCA 58.645 47.619 0.00 0.00 0.00 5.69
3532 3865 2.779755 TGTACCTCAAATGTCCGCAT 57.220 45.000 0.00 0.00 36.80 4.73
3533 3866 2.627945 TGTACCTCAAATGTCCGCATC 58.372 47.619 0.00 0.00 33.50 3.91
3534 3867 1.593006 GTACCTCAAATGTCCGCATCG 59.407 52.381 0.00 0.00 33.50 3.84
3535 3868 0.249120 ACCTCAAATGTCCGCATCGA 59.751 50.000 0.00 0.00 33.50 3.59
3536 3869 1.134401 ACCTCAAATGTCCGCATCGAT 60.134 47.619 0.00 0.00 33.50 3.59
3537 3870 1.528586 CCTCAAATGTCCGCATCGATC 59.471 52.381 0.00 0.00 33.50 3.69
3538 3871 2.477825 CTCAAATGTCCGCATCGATCT 58.522 47.619 0.00 0.00 33.50 2.75
3539 3872 2.473816 TCAAATGTCCGCATCGATCTC 58.526 47.619 0.00 0.00 33.50 2.75
3540 3873 2.159114 TCAAATGTCCGCATCGATCTCA 60.159 45.455 0.00 0.00 33.50 3.27
3541 3874 2.602257 AATGTCCGCATCGATCTCAA 57.398 45.000 0.00 0.00 33.50 3.02
3542 3875 2.602257 ATGTCCGCATCGATCTCAAA 57.398 45.000 0.00 0.00 0.00 2.69
3543 3876 2.602257 TGTCCGCATCGATCTCAAAT 57.398 45.000 0.00 0.00 0.00 2.32
3544 3877 2.204237 TGTCCGCATCGATCTCAAATG 58.796 47.619 0.00 0.00 0.00 2.32
3545 3878 1.528586 GTCCGCATCGATCTCAAATGG 59.471 52.381 0.00 0.00 0.00 3.16
3546 3879 1.412343 TCCGCATCGATCTCAAATGGA 59.588 47.619 0.00 0.00 0.00 3.41
3547 3880 2.158971 TCCGCATCGATCTCAAATGGAA 60.159 45.455 0.00 0.00 0.00 3.53
3548 3881 2.810274 CCGCATCGATCTCAAATGGAAT 59.190 45.455 0.00 0.00 0.00 3.01
3549 3882 3.251729 CCGCATCGATCTCAAATGGAATT 59.748 43.478 0.00 0.00 38.98 2.17
3562 3895 4.946478 AATGGAATTTGAACAAACCGGA 57.054 36.364 9.46 0.00 26.74 5.14
3563 3896 5.482163 AATGGAATTTGAACAAACCGGAT 57.518 34.783 9.46 0.00 26.74 4.18
3564 3897 4.250116 TGGAATTTGAACAAACCGGATG 57.750 40.909 9.46 9.74 32.51 3.51
3565 3898 3.891977 TGGAATTTGAACAAACCGGATGA 59.108 39.130 9.46 0.00 32.51 2.92
3566 3899 4.526262 TGGAATTTGAACAAACCGGATGAT 59.474 37.500 9.46 0.57 32.51 2.45
3567 3900 5.011533 TGGAATTTGAACAAACCGGATGATT 59.988 36.000 9.46 2.10 32.51 2.57
3568 3901 5.931724 GGAATTTGAACAAACCGGATGATTT 59.068 36.000 9.46 0.00 32.51 2.17
3569 3902 6.090763 GGAATTTGAACAAACCGGATGATTTC 59.909 38.462 9.46 8.26 32.51 2.17
3570 3903 5.521906 TTTGAACAAACCGGATGATTTCA 57.478 34.783 9.46 10.74 0.00 2.69
3571 3904 5.720371 TTGAACAAACCGGATGATTTCAT 57.280 34.783 9.46 0.00 39.70 2.57
3572 3905 5.720371 TGAACAAACCGGATGATTTCATT 57.280 34.783 9.46 0.00 36.57 2.57
3573 3906 6.095432 TGAACAAACCGGATGATTTCATTT 57.905 33.333 9.46 0.00 36.57 2.32
3574 3907 7.220741 TGAACAAACCGGATGATTTCATTTA 57.779 32.000 9.46 0.00 36.57 1.40
3575 3908 7.661968 TGAACAAACCGGATGATTTCATTTAA 58.338 30.769 9.46 0.00 36.57 1.52
3576 3909 8.144478 TGAACAAACCGGATGATTTCATTTAAA 58.856 29.630 9.46 0.00 36.57 1.52
3577 3910 8.894768 AACAAACCGGATGATTTCATTTAAAA 57.105 26.923 9.46 0.00 36.57 1.52
3578 3911 8.305441 ACAAACCGGATGATTTCATTTAAAAC 57.695 30.769 9.46 0.00 36.57 2.43
3579 3912 7.386573 ACAAACCGGATGATTTCATTTAAAACC 59.613 33.333 9.46 0.00 36.57 3.27
3580 3913 6.597832 ACCGGATGATTTCATTTAAAACCA 57.402 33.333 9.46 0.00 36.57 3.67
3581 3914 6.998802 ACCGGATGATTTCATTTAAAACCAA 58.001 32.000 9.46 0.00 36.57 3.67
3582 3915 6.871492 ACCGGATGATTTCATTTAAAACCAAC 59.129 34.615 9.46 0.00 36.57 3.77
3583 3916 6.312672 CCGGATGATTTCATTTAAAACCAACC 59.687 38.462 0.00 0.00 36.57 3.77
3584 3917 6.870965 CGGATGATTTCATTTAAAACCAACCA 59.129 34.615 0.00 0.00 36.57 3.67
3585 3918 7.386299 CGGATGATTTCATTTAAAACCAACCAA 59.614 33.333 0.00 0.00 36.57 3.67
3586 3919 9.061435 GGATGATTTCATTTAAAACCAACCAAA 57.939 29.630 0.00 0.00 36.57 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.302192 CACCCGGTTTCGTGATGGT 60.302 57.895 0.00 0.00 31.36 3.55
17 18 2.686816 GCACCCGGTTTCGTGATGG 61.687 63.158 12.16 0.00 31.36 3.51
18 19 2.867472 GCACCCGGTTTCGTGATG 59.133 61.111 12.16 0.00 31.36 3.07
19 20 2.740826 CGCACCCGGTTTCGTGAT 60.741 61.111 12.16 0.00 31.36 3.06
66 67 1.200948 GCTTTGATCAGGTCAAGCACC 59.799 52.381 20.08 0.00 46.85 5.01
68 69 2.430465 GAGCTTTGATCAGGTCAAGCA 58.570 47.619 24.57 0.00 46.85 3.91
69 70 1.396301 CGAGCTTTGATCAGGTCAAGC 59.604 52.381 18.17 18.17 46.85 4.01
70 71 1.396301 GCGAGCTTTGATCAGGTCAAG 59.604 52.381 12.85 7.52 46.85 3.02
71 72 1.270785 TGCGAGCTTTGATCAGGTCAA 60.271 47.619 12.85 0.00 44.87 3.18
72 73 0.321346 TGCGAGCTTTGATCAGGTCA 59.679 50.000 12.85 0.00 40.71 4.02
73 74 1.005340 CTGCGAGCTTTGATCAGGTC 58.995 55.000 0.00 0.00 37.85 3.85
74 75 1.023513 GCTGCGAGCTTTGATCAGGT 61.024 55.000 0.00 0.00 38.45 4.00
75 76 1.712977 GGCTGCGAGCTTTGATCAGG 61.713 60.000 0.00 0.00 41.99 3.86
76 77 1.720301 GGCTGCGAGCTTTGATCAG 59.280 57.895 0.00 0.00 41.99 2.90
77 78 2.102438 CGGCTGCGAGCTTTGATCA 61.102 57.895 7.85 0.00 41.99 2.92
78 79 2.705826 CGGCTGCGAGCTTTGATC 59.294 61.111 7.85 0.00 41.99 2.92
79 80 3.503363 GCGGCTGCGAGCTTTGAT 61.503 61.111 0.00 0.00 41.99 2.57
210 232 2.038557 AGACGTAGCCTTGATTTGGTGT 59.961 45.455 0.00 0.00 0.00 4.16
238 261 2.263077 CATGCAACAGAGAGGACGTAC 58.737 52.381 0.00 0.00 0.00 3.67
239 262 1.404181 GCATGCAACAGAGAGGACGTA 60.404 52.381 14.21 0.00 0.00 3.57
240 263 0.671781 GCATGCAACAGAGAGGACGT 60.672 55.000 14.21 0.00 0.00 4.34
242 265 0.801251 GTGCATGCAACAGAGAGGAC 59.199 55.000 24.58 1.36 0.00 3.85
244 267 0.803117 CAGTGCATGCAACAGAGAGG 59.197 55.000 24.58 1.94 0.00 3.69
255 278 2.427905 GTGTGCGTGCAGTGCATG 60.428 61.111 29.27 29.27 46.98 4.06
256 279 4.016629 CGTGTGCGTGCAGTGCAT 62.017 61.111 22.87 0.00 45.34 3.96
259 282 4.016629 ATGCGTGTGCGTGCAGTG 62.017 61.111 0.00 0.00 45.52 3.66
331 354 6.103997 TCGATTTTATTTACTCGCAGGTTCT 58.896 36.000 0.00 0.00 0.00 3.01
334 357 6.046593 TGATCGATTTTATTTACTCGCAGGT 58.953 36.000 0.00 0.00 0.00 4.00
339 362 7.531871 CCATGCTTGATCGATTTTATTTACTCG 59.468 37.037 0.00 0.00 0.00 4.18
341 364 7.013655 AGCCATGCTTGATCGATTTTATTTACT 59.986 33.333 0.00 0.00 33.89 2.24
342 365 7.141363 AGCCATGCTTGATCGATTTTATTTAC 58.859 34.615 0.00 0.00 33.89 2.01
343 366 7.013178 TGAGCCATGCTTGATCGATTTTATTTA 59.987 33.333 0.00 0.00 39.88 1.40
345 368 5.300034 TGAGCCATGCTTGATCGATTTTATT 59.700 36.000 0.00 0.00 39.88 1.40
479 562 1.202099 TCGCACCTAACAATGGGGGA 61.202 55.000 0.00 0.00 30.52 4.81
847 967 2.233271 GATGGATGGCAATGAATCGGT 58.767 47.619 0.00 0.00 0.00 4.69
850 970 1.068055 GGCGATGGATGGCAATGAATC 60.068 52.381 0.00 0.00 32.78 2.52
883 1003 1.610554 TATATAGAAGCGGCCGGGGC 61.611 60.000 29.38 11.17 41.06 5.80
945 1065 0.609406 CGAGAGGTGAGGTGAGGACA 60.609 60.000 0.00 0.00 0.00 4.02
2672 2856 4.112634 GTTTTCTTGCCACTTCCAACTTC 58.887 43.478 0.00 0.00 0.00 3.01
2807 2992 0.534412 TTGTTTGTTGCCCCTGTGTG 59.466 50.000 0.00 0.00 0.00 3.82
2936 3246 0.534412 CCCTGCCAACAACAACAACA 59.466 50.000 0.00 0.00 0.00 3.33
2937 3247 0.820871 TCCCTGCCAACAACAACAAC 59.179 50.000 0.00 0.00 0.00 3.32
2938 3248 1.110442 CTCCCTGCCAACAACAACAA 58.890 50.000 0.00 0.00 0.00 2.83
2949 3259 4.643387 ACACGCAACCTCCCTGCC 62.643 66.667 0.00 0.00 36.40 4.85
3002 3314 4.461198 ACGGGTCCATCCAGAAAATAATC 58.539 43.478 0.00 0.00 38.11 1.75
3003 3315 4.519906 ACGGGTCCATCCAGAAAATAAT 57.480 40.909 0.00 0.00 38.11 1.28
3004 3316 4.013728 CAACGGGTCCATCCAGAAAATAA 58.986 43.478 0.00 0.00 38.11 1.40
3045 3360 1.406341 CGCCAGAAATAGAACGGGGAA 60.406 52.381 0.00 0.00 31.68 3.97
3046 3361 0.177141 CGCCAGAAATAGAACGGGGA 59.823 55.000 0.00 0.00 31.68 4.81
3047 3362 0.107848 ACGCCAGAAATAGAACGGGG 60.108 55.000 0.00 0.00 35.89 5.73
3051 3366 5.563842 CAATCAAGACGCCAGAAATAGAAC 58.436 41.667 0.00 0.00 0.00 3.01
3088 3403 0.589729 CGTGCAATAACGCCATGAGC 60.590 55.000 0.00 0.00 36.65 4.26
3091 3406 0.027979 CCTCGTGCAATAACGCCATG 59.972 55.000 0.00 0.00 43.26 3.66
3092 3407 0.392461 ACCTCGTGCAATAACGCCAT 60.392 50.000 0.00 0.00 43.26 4.40
3093 3408 1.004320 ACCTCGTGCAATAACGCCA 60.004 52.632 0.00 0.00 43.26 5.69
3094 3409 1.423845 CACCTCGTGCAATAACGCC 59.576 57.895 0.00 0.00 43.26 5.68
3095 3410 1.017177 TCCACCTCGTGCAATAACGC 61.017 55.000 0.00 0.00 43.26 4.84
3096 3411 0.999406 CTCCACCTCGTGCAATAACG 59.001 55.000 0.00 0.00 44.92 3.18
3097 3412 2.380084 TCTCCACCTCGTGCAATAAC 57.620 50.000 0.00 0.00 31.34 1.89
3098 3413 2.499693 TCATCTCCACCTCGTGCAATAA 59.500 45.455 0.00 0.00 31.34 1.40
3099 3414 2.101415 CTCATCTCCACCTCGTGCAATA 59.899 50.000 0.00 0.00 31.34 1.90
3102 3417 0.611896 TCTCATCTCCACCTCGTGCA 60.612 55.000 0.00 0.00 31.34 4.57
3112 3427 4.793071 CGATGTACACTGATCTCATCTCC 58.207 47.826 0.00 0.00 34.58 3.71
3115 3430 3.980134 CAGCGATGTACACTGATCTCATC 59.020 47.826 0.00 0.00 33.10 2.92
3125 3441 1.790755 TGGACAACAGCGATGTACAC 58.209 50.000 6.79 0.83 36.72 2.90
3128 3444 3.610040 AAGATGGACAACAGCGATGTA 57.390 42.857 6.79 0.00 41.32 2.29
3140 3456 4.082733 GCCTCAAACAACCTTAAGATGGAC 60.083 45.833 3.36 0.00 0.00 4.02
3173 3489 0.456221 TCAAATCGCTCTCTCGGTCC 59.544 55.000 0.00 0.00 0.00 4.46
3187 3518 7.505585 TCAACAAAGAAACTCCCACTATCAAAT 59.494 33.333 0.00 0.00 0.00 2.32
3194 3525 3.555966 CCTCAACAAAGAAACTCCCACT 58.444 45.455 0.00 0.00 0.00 4.00
3198 3529 3.821748 ACTCCCTCAACAAAGAAACTCC 58.178 45.455 0.00 0.00 0.00 3.85
3201 3532 3.875134 TCGAACTCCCTCAACAAAGAAAC 59.125 43.478 0.00 0.00 0.00 2.78
3204 3535 4.282449 TGTATCGAACTCCCTCAACAAAGA 59.718 41.667 0.00 0.00 0.00 2.52
3211 3542 4.755411 GTTTGATGTATCGAACTCCCTCA 58.245 43.478 14.81 0.00 44.24 3.86
3218 3549 6.042777 TGGATCAGAGTTTGATGTATCGAAC 58.957 40.000 14.42 14.42 46.51 3.95
3219 3550 6.220726 TGGATCAGAGTTTGATGTATCGAA 57.779 37.500 0.00 0.00 46.51 3.71
3220 3551 5.221322 CCTGGATCAGAGTTTGATGTATCGA 60.221 44.000 0.00 0.00 46.51 3.59
3231 3562 1.277557 GCACTGTCCTGGATCAGAGTT 59.722 52.381 23.87 7.35 35.84 3.01
3238 3569 2.306805 TCTTTGATGCACTGTCCTGGAT 59.693 45.455 0.00 0.00 0.00 3.41
3247 3580 3.689347 TGTATTGCCTCTTTGATGCACT 58.311 40.909 0.00 0.00 33.35 4.40
3257 3590 8.814038 ATTCTTTATCAGTTTGTATTGCCTCT 57.186 30.769 0.00 0.00 0.00 3.69
3266 3599 7.069569 CACGTCGAAATTCTTTATCAGTTTGT 58.930 34.615 0.00 0.00 0.00 2.83
3281 3614 3.502211 AGAATGAAAAGGCACGTCGAAAT 59.498 39.130 0.00 0.00 0.00 2.17
3284 3617 2.066262 GAGAATGAAAAGGCACGTCGA 58.934 47.619 0.00 0.00 0.00 4.20
3290 3623 9.947433 AAATAATCAAATGAGAATGAAAAGGCA 57.053 25.926 0.00 0.00 0.00 4.75
3303 3636 9.531942 CCGGAAAATGATCAAATAATCAAATGA 57.468 29.630 0.00 0.00 39.04 2.57
3312 3645 3.942115 TGCGACCGGAAAATGATCAAATA 59.058 39.130 9.46 0.00 0.00 1.40
3313 3646 2.752354 TGCGACCGGAAAATGATCAAAT 59.248 40.909 9.46 0.00 0.00 2.32
3314 3647 2.155279 TGCGACCGGAAAATGATCAAA 58.845 42.857 9.46 0.00 0.00 2.69
3315 3648 1.814793 TGCGACCGGAAAATGATCAA 58.185 45.000 9.46 0.00 0.00 2.57
3316 3649 1.814793 TTGCGACCGGAAAATGATCA 58.185 45.000 9.46 0.00 0.00 2.92
3317 3650 2.911819 TTTGCGACCGGAAAATGATC 57.088 45.000 9.46 0.00 32.69 2.92
3318 3651 3.866883 AATTTGCGACCGGAAAATGAT 57.133 38.095 9.46 0.00 38.81 2.45
3319 3652 3.651803 AAATTTGCGACCGGAAAATGA 57.348 38.095 9.46 0.00 38.81 2.57
3320 3653 4.862018 ACATAAATTTGCGACCGGAAAATG 59.138 37.500 9.46 13.34 38.81 2.32
3321 3654 5.066968 ACATAAATTTGCGACCGGAAAAT 57.933 34.783 9.46 5.90 38.81 1.82
3333 3666 4.651994 AGAAGCTCGCGAACATAAATTTG 58.348 39.130 11.33 0.00 0.00 2.32
3346 3679 8.587111 CCTTTATTAATTGAAAAAGAAGCTCGC 58.413 33.333 9.16 0.00 31.96 5.03
3351 3684 8.100164 TGGGCCCTTTATTAATTGAAAAAGAAG 58.900 33.333 25.70 3.46 31.96 2.85
3352 3685 7.880713 GTGGGCCCTTTATTAATTGAAAAAGAA 59.119 33.333 25.70 0.00 31.96 2.52
3353 3686 7.016661 TGTGGGCCCTTTATTAATTGAAAAAGA 59.983 33.333 25.70 0.00 31.96 2.52
3354 3687 7.119116 GTGTGGGCCCTTTATTAATTGAAAAAG 59.881 37.037 25.70 0.00 0.00 2.27
3355 3688 6.937465 GTGTGGGCCCTTTATTAATTGAAAAA 59.063 34.615 25.70 0.00 0.00 1.94
3356 3689 6.468543 GTGTGGGCCCTTTATTAATTGAAAA 58.531 36.000 25.70 0.00 0.00 2.29
3357 3690 5.336849 CGTGTGGGCCCTTTATTAATTGAAA 60.337 40.000 25.70 0.00 0.00 2.69
3358 3691 4.158764 CGTGTGGGCCCTTTATTAATTGAA 59.841 41.667 25.70 0.00 0.00 2.69
3359 3692 3.697045 CGTGTGGGCCCTTTATTAATTGA 59.303 43.478 25.70 0.00 0.00 2.57
3360 3693 3.181480 CCGTGTGGGCCCTTTATTAATTG 60.181 47.826 25.70 1.43 0.00 2.32
3361 3694 3.028130 CCGTGTGGGCCCTTTATTAATT 58.972 45.455 25.70 0.00 0.00 1.40
3362 3695 2.661718 CCGTGTGGGCCCTTTATTAAT 58.338 47.619 25.70 0.00 0.00 1.40
3363 3696 2.131776 CCGTGTGGGCCCTTTATTAA 57.868 50.000 25.70 0.00 0.00 1.40
3364 3697 3.886324 CCGTGTGGGCCCTTTATTA 57.114 52.632 25.70 0.00 0.00 0.98
3365 3698 4.755656 CCGTGTGGGCCCTTTATT 57.244 55.556 25.70 0.00 0.00 1.40
3374 3707 0.900647 TAAAAATGGGGCCGTGTGGG 60.901 55.000 0.00 0.00 39.58 4.61
3375 3708 1.190643 ATAAAAATGGGGCCGTGTGG 58.809 50.000 0.00 0.00 38.77 4.17
3376 3709 4.098654 TCATAATAAAAATGGGGCCGTGTG 59.901 41.667 0.00 0.00 0.00 3.82
3377 3710 4.282496 TCATAATAAAAATGGGGCCGTGT 58.718 39.130 0.00 0.00 0.00 4.49
3378 3711 4.927978 TCATAATAAAAATGGGGCCGTG 57.072 40.909 0.00 0.00 0.00 4.94
3379 3712 5.941555 TTTCATAATAAAAATGGGGCCGT 57.058 34.783 0.00 0.00 0.00 5.68
3380 3713 6.520272 TCATTTCATAATAAAAATGGGGCCG 58.480 36.000 0.00 0.00 41.21 6.13
3381 3714 8.744568 TTTCATTTCATAATAAAAATGGGGCC 57.255 30.769 0.00 0.00 41.21 5.80
3396 3729 9.005777 CCATTTTCAGTTCCATTTTCATTTCAT 57.994 29.630 0.00 0.00 0.00 2.57
3397 3730 8.209584 TCCATTTTCAGTTCCATTTTCATTTCA 58.790 29.630 0.00 0.00 0.00 2.69
3398 3731 8.606040 TCCATTTTCAGTTCCATTTTCATTTC 57.394 30.769 0.00 0.00 0.00 2.17
3399 3732 8.212995 ACTCCATTTTCAGTTCCATTTTCATTT 58.787 29.630 0.00 0.00 0.00 2.32
3400 3733 7.738847 ACTCCATTTTCAGTTCCATTTTCATT 58.261 30.769 0.00 0.00 0.00 2.57
3401 3734 7.307131 ACTCCATTTTCAGTTCCATTTTCAT 57.693 32.000 0.00 0.00 0.00 2.57
3402 3735 6.729690 ACTCCATTTTCAGTTCCATTTTCA 57.270 33.333 0.00 0.00 0.00 2.69
3403 3736 8.522830 TCATACTCCATTTTCAGTTCCATTTTC 58.477 33.333 0.00 0.00 0.00 2.29
3404 3737 8.421249 TCATACTCCATTTTCAGTTCCATTTT 57.579 30.769 0.00 0.00 0.00 1.82
3405 3738 8.472413 CATCATACTCCATTTTCAGTTCCATTT 58.528 33.333 0.00 0.00 0.00 2.32
3406 3739 7.417116 GCATCATACTCCATTTTCAGTTCCATT 60.417 37.037 0.00 0.00 0.00 3.16
3407 3740 6.040166 GCATCATACTCCATTTTCAGTTCCAT 59.960 38.462 0.00 0.00 0.00 3.41
3408 3741 5.357878 GCATCATACTCCATTTTCAGTTCCA 59.642 40.000 0.00 0.00 0.00 3.53
3409 3742 5.357878 TGCATCATACTCCATTTTCAGTTCC 59.642 40.000 0.00 0.00 0.00 3.62
3410 3743 6.441093 TGCATCATACTCCATTTTCAGTTC 57.559 37.500 0.00 0.00 0.00 3.01
3411 3744 6.209192 TGTTGCATCATACTCCATTTTCAGTT 59.791 34.615 0.00 0.00 0.00 3.16
3412 3745 5.711506 TGTTGCATCATACTCCATTTTCAGT 59.288 36.000 0.00 0.00 0.00 3.41
3413 3746 6.198650 TGTTGCATCATACTCCATTTTCAG 57.801 37.500 0.00 0.00 0.00 3.02
3414 3747 5.393352 GCTGTTGCATCATACTCCATTTTCA 60.393 40.000 0.00 0.00 39.41 2.69
3415 3748 5.039333 GCTGTTGCATCATACTCCATTTTC 58.961 41.667 0.00 0.00 39.41 2.29
3416 3749 4.142093 GGCTGTTGCATCATACTCCATTTT 60.142 41.667 0.00 0.00 41.91 1.82
3417 3750 3.382546 GGCTGTTGCATCATACTCCATTT 59.617 43.478 0.00 0.00 41.91 2.32
3418 3751 2.954318 GGCTGTTGCATCATACTCCATT 59.046 45.455 0.00 0.00 41.91 3.16
3419 3752 2.092267 TGGCTGTTGCATCATACTCCAT 60.092 45.455 0.00 0.00 41.91 3.41
3420 3753 1.281577 TGGCTGTTGCATCATACTCCA 59.718 47.619 0.00 1.77 41.91 3.86
3421 3754 2.042686 TGGCTGTTGCATCATACTCC 57.957 50.000 0.00 0.00 41.91 3.85
3422 3755 3.733077 GCTTTGGCTGTTGCATCATACTC 60.733 47.826 0.00 0.00 41.91 2.59
3423 3756 2.165030 GCTTTGGCTGTTGCATCATACT 59.835 45.455 0.00 0.00 41.91 2.12
3424 3757 2.094597 TGCTTTGGCTGTTGCATCATAC 60.095 45.455 0.00 0.00 41.91 2.39
3425 3758 2.169330 TGCTTTGGCTGTTGCATCATA 58.831 42.857 0.00 0.00 41.91 2.15
3426 3759 0.970640 TGCTTTGGCTGTTGCATCAT 59.029 45.000 0.00 0.00 41.91 2.45
3427 3760 0.970640 ATGCTTTGGCTGTTGCATCA 59.029 45.000 0.00 0.00 41.60 3.07
3428 3761 3.826637 ATGCTTTGGCTGTTGCATC 57.173 47.368 0.00 0.00 41.60 3.91
3430 3763 0.751452 TTGATGCTTTGGCTGTTGCA 59.249 45.000 0.00 0.00 41.91 4.08
3431 3764 1.868469 TTTGATGCTTTGGCTGTTGC 58.132 45.000 0.00 0.00 39.59 4.17
3432 3765 2.222445 GCTTTTGATGCTTTGGCTGTTG 59.778 45.455 0.00 0.00 39.59 3.33
3433 3766 2.158928 TGCTTTTGATGCTTTGGCTGTT 60.159 40.909 0.00 0.00 39.59 3.16
3434 3767 1.413445 TGCTTTTGATGCTTTGGCTGT 59.587 42.857 0.00 0.00 39.59 4.40
3435 3768 2.157834 TGCTTTTGATGCTTTGGCTG 57.842 45.000 0.00 0.00 39.59 4.85
3436 3769 2.914695 TTGCTTTTGATGCTTTGGCT 57.085 40.000 0.00 0.00 39.59 4.75
3437 3770 3.967203 TTTTGCTTTTGATGCTTTGGC 57.033 38.095 0.00 0.00 39.26 4.52
3455 3788 5.155161 AGATGCCCTAACCTTTTCCTTTTT 58.845 37.500 0.00 0.00 0.00 1.94
3456 3789 4.752063 AGATGCCCTAACCTTTTCCTTTT 58.248 39.130 0.00 0.00 0.00 2.27
3457 3790 4.404185 AGATGCCCTAACCTTTTCCTTT 57.596 40.909 0.00 0.00 0.00 3.11
3458 3791 4.202673 TGAAGATGCCCTAACCTTTTCCTT 60.203 41.667 0.00 0.00 0.00 3.36
3459 3792 3.333680 TGAAGATGCCCTAACCTTTTCCT 59.666 43.478 0.00 0.00 0.00 3.36
3460 3793 3.697166 TGAAGATGCCCTAACCTTTTCC 58.303 45.455 0.00 0.00 0.00 3.13
3461 3794 5.185828 ACATTGAAGATGCCCTAACCTTTTC 59.814 40.000 0.00 0.00 0.00 2.29
3462 3795 5.086621 ACATTGAAGATGCCCTAACCTTTT 58.913 37.500 0.00 0.00 0.00 2.27
3463 3796 4.677182 ACATTGAAGATGCCCTAACCTTT 58.323 39.130 0.00 0.00 0.00 3.11
3464 3797 4.322057 ACATTGAAGATGCCCTAACCTT 57.678 40.909 0.00 0.00 0.00 3.50
3465 3798 4.721776 TCTACATTGAAGATGCCCTAACCT 59.278 41.667 0.00 0.00 0.00 3.50
3466 3799 4.816925 GTCTACATTGAAGATGCCCTAACC 59.183 45.833 0.00 0.00 0.00 2.85
3467 3800 4.816925 GGTCTACATTGAAGATGCCCTAAC 59.183 45.833 0.00 0.00 0.00 2.34
3468 3801 4.141482 GGGTCTACATTGAAGATGCCCTAA 60.141 45.833 0.00 0.00 30.20 2.69
3469 3802 3.391296 GGGTCTACATTGAAGATGCCCTA 59.609 47.826 0.00 0.00 30.20 3.53
3470 3803 2.173569 GGGTCTACATTGAAGATGCCCT 59.826 50.000 0.00 0.00 30.20 5.19
3471 3804 2.576615 GGGTCTACATTGAAGATGCCC 58.423 52.381 0.00 0.00 0.00 5.36
3472 3805 2.173569 AGGGGTCTACATTGAAGATGCC 59.826 50.000 0.00 0.00 0.00 4.40
3473 3806 3.567478 AGGGGTCTACATTGAAGATGC 57.433 47.619 0.00 0.00 0.00 3.91
3474 3807 6.284459 GTTCTAGGGGTCTACATTGAAGATG 58.716 44.000 0.00 0.00 0.00 2.90
3475 3808 5.069251 CGTTCTAGGGGTCTACATTGAAGAT 59.931 44.000 0.00 0.00 0.00 2.40
3476 3809 4.401519 CGTTCTAGGGGTCTACATTGAAGA 59.598 45.833 0.00 0.00 0.00 2.87
3477 3810 4.441634 CCGTTCTAGGGGTCTACATTGAAG 60.442 50.000 0.00 0.00 0.00 3.02
3478 3811 3.449737 CCGTTCTAGGGGTCTACATTGAA 59.550 47.826 0.00 0.00 0.00 2.69
3479 3812 3.028850 CCGTTCTAGGGGTCTACATTGA 58.971 50.000 0.00 0.00 0.00 2.57
3480 3813 3.028850 TCCGTTCTAGGGGTCTACATTG 58.971 50.000 0.00 0.00 0.00 2.82
3481 3814 3.029570 GTCCGTTCTAGGGGTCTACATT 58.970 50.000 0.00 0.00 0.00 2.71
3482 3815 2.664015 GTCCGTTCTAGGGGTCTACAT 58.336 52.381 0.00 0.00 0.00 2.29
3483 3816 1.341383 GGTCCGTTCTAGGGGTCTACA 60.341 57.143 0.00 0.00 0.00 2.74
3484 3817 1.064091 AGGTCCGTTCTAGGGGTCTAC 60.064 57.143 0.00 0.00 0.00 2.59
3485 3818 1.302907 AGGTCCGTTCTAGGGGTCTA 58.697 55.000 0.00 0.00 0.00 2.59
3486 3819 0.412640 AAGGTCCGTTCTAGGGGTCT 59.587 55.000 0.00 0.00 0.00 3.85
3487 3820 0.822811 GAAGGTCCGTTCTAGGGGTC 59.177 60.000 0.00 0.00 0.00 4.46
3488 3821 0.616964 GGAAGGTCCGTTCTAGGGGT 60.617 60.000 0.00 0.00 0.00 4.95
3489 3822 0.616679 TGGAAGGTCCGTTCTAGGGG 60.617 60.000 0.00 0.00 40.17 4.79
3490 3823 1.066358 GTTGGAAGGTCCGTTCTAGGG 60.066 57.143 0.00 0.00 40.17 3.53
3491 3824 1.066358 GGTTGGAAGGTCCGTTCTAGG 60.066 57.143 0.00 0.00 40.17 3.02
3492 3825 1.621814 TGGTTGGAAGGTCCGTTCTAG 59.378 52.381 0.42 0.00 40.17 2.43
3493 3826 1.719529 TGGTTGGAAGGTCCGTTCTA 58.280 50.000 0.42 0.00 40.17 2.10
3494 3827 1.064825 ATGGTTGGAAGGTCCGTTCT 58.935 50.000 0.42 0.00 40.17 3.01
3495 3828 1.165270 CATGGTTGGAAGGTCCGTTC 58.835 55.000 0.00 0.00 40.17 3.95
3496 3829 0.476771 ACATGGTTGGAAGGTCCGTT 59.523 50.000 0.00 0.00 40.17 4.44
3497 3830 1.002773 GTACATGGTTGGAAGGTCCGT 59.997 52.381 0.00 0.00 40.17 4.69
3498 3831 1.677820 GGTACATGGTTGGAAGGTCCG 60.678 57.143 0.00 0.00 40.17 4.79
3499 3832 1.633945 AGGTACATGGTTGGAAGGTCC 59.366 52.381 0.00 0.00 36.96 4.46
3500 3833 2.304761 TGAGGTACATGGTTGGAAGGTC 59.695 50.000 0.00 0.00 0.00 3.85
3501 3834 2.344592 TGAGGTACATGGTTGGAAGGT 58.655 47.619 0.00 0.00 0.00 3.50
3502 3835 3.433306 TTGAGGTACATGGTTGGAAGG 57.567 47.619 0.00 0.00 0.00 3.46
3503 3836 4.766891 ACATTTGAGGTACATGGTTGGAAG 59.233 41.667 0.00 0.00 0.00 3.46
3504 3837 4.735369 ACATTTGAGGTACATGGTTGGAA 58.265 39.130 0.00 0.00 0.00 3.53
3505 3838 4.331968 GACATTTGAGGTACATGGTTGGA 58.668 43.478 0.00 0.00 0.00 3.53
3506 3839 3.443681 GGACATTTGAGGTACATGGTTGG 59.556 47.826 0.00 0.00 0.00 3.77
3507 3840 3.126858 CGGACATTTGAGGTACATGGTTG 59.873 47.826 0.00 0.00 0.00 3.77
3508 3841 3.343617 CGGACATTTGAGGTACATGGTT 58.656 45.455 0.00 0.00 0.00 3.67
3509 3842 2.939640 GCGGACATTTGAGGTACATGGT 60.940 50.000 0.00 0.00 0.00 3.55
3510 3843 1.670811 GCGGACATTTGAGGTACATGG 59.329 52.381 0.00 0.00 0.00 3.66
3511 3844 2.355197 TGCGGACATTTGAGGTACATG 58.645 47.619 0.00 0.00 0.00 3.21
3512 3845 2.779755 TGCGGACATTTGAGGTACAT 57.220 45.000 0.00 0.00 0.00 2.29
3513 3846 2.627945 GATGCGGACATTTGAGGTACA 58.372 47.619 0.00 0.00 36.35 2.90
3514 3847 1.593006 CGATGCGGACATTTGAGGTAC 59.407 52.381 0.00 0.00 36.35 3.34
3515 3848 1.478916 TCGATGCGGACATTTGAGGTA 59.521 47.619 0.00 0.00 36.35 3.08
3516 3849 0.249120 TCGATGCGGACATTTGAGGT 59.751 50.000 0.00 0.00 36.35 3.85
3517 3850 1.528586 GATCGATGCGGACATTTGAGG 59.471 52.381 0.54 0.00 36.35 3.86
3518 3851 2.474359 GAGATCGATGCGGACATTTGAG 59.526 50.000 0.54 0.00 36.35 3.02
3519 3852 2.159114 TGAGATCGATGCGGACATTTGA 60.159 45.455 0.54 0.00 36.35 2.69
3520 3853 2.204237 TGAGATCGATGCGGACATTTG 58.796 47.619 0.54 0.00 36.35 2.32
3521 3854 2.602257 TGAGATCGATGCGGACATTT 57.398 45.000 0.54 0.00 36.35 2.32
3522 3855 2.602257 TTGAGATCGATGCGGACATT 57.398 45.000 0.54 0.00 36.35 2.71
3523 3856 2.602257 TTTGAGATCGATGCGGACAT 57.398 45.000 0.54 0.00 39.98 3.06
3524 3857 2.204237 CATTTGAGATCGATGCGGACA 58.796 47.619 0.54 0.00 0.00 4.02
3525 3858 1.528586 CCATTTGAGATCGATGCGGAC 59.471 52.381 0.54 0.00 0.00 4.79
3526 3859 1.412343 TCCATTTGAGATCGATGCGGA 59.588 47.619 0.54 0.00 0.00 5.54
3527 3860 1.869774 TCCATTTGAGATCGATGCGG 58.130 50.000 0.54 0.00 0.00 5.69
3528 3861 4.478843 AATTCCATTTGAGATCGATGCG 57.521 40.909 0.54 0.00 0.00 4.73
3540 3873 5.283457 TCCGGTTTGTTCAAATTCCATTT 57.717 34.783 0.00 0.00 0.00 2.32
3541 3874 4.946478 TCCGGTTTGTTCAAATTCCATT 57.054 36.364 0.00 0.00 0.00 3.16
3542 3875 4.526262 TCATCCGGTTTGTTCAAATTCCAT 59.474 37.500 0.00 0.00 0.00 3.41
3543 3876 3.891977 TCATCCGGTTTGTTCAAATTCCA 59.108 39.130 0.00 0.00 0.00 3.53
3544 3877 4.513198 TCATCCGGTTTGTTCAAATTCC 57.487 40.909 0.00 0.00 0.00 3.01
3545 3878 6.644592 TGAAATCATCCGGTTTGTTCAAATTC 59.355 34.615 0.00 0.00 0.00 2.17
3546 3879 6.520272 TGAAATCATCCGGTTTGTTCAAATT 58.480 32.000 0.00 0.00 0.00 1.82
3547 3880 6.095432 TGAAATCATCCGGTTTGTTCAAAT 57.905 33.333 0.00 0.00 0.00 2.32
3548 3881 5.521906 TGAAATCATCCGGTTTGTTCAAA 57.478 34.783 0.00 0.00 0.00 2.69
3549 3882 5.720371 ATGAAATCATCCGGTTTGTTCAA 57.280 34.783 0.00 0.00 28.78 2.69
3550 3883 5.720371 AATGAAATCATCCGGTTTGTTCA 57.280 34.783 0.00 8.26 35.10 3.18
3551 3884 8.527567 TTTAAATGAAATCATCCGGTTTGTTC 57.472 30.769 0.00 2.84 35.10 3.18
3552 3885 8.769891 GTTTTAAATGAAATCATCCGGTTTGTT 58.230 29.630 0.00 0.00 35.10 2.83
3553 3886 7.386573 GGTTTTAAATGAAATCATCCGGTTTGT 59.613 33.333 0.00 0.00 35.10 2.83
3554 3887 7.386299 TGGTTTTAAATGAAATCATCCGGTTTG 59.614 33.333 0.00 0.36 35.10 2.93
3555 3888 7.445945 TGGTTTTAAATGAAATCATCCGGTTT 58.554 30.769 0.00 0.00 35.10 3.27
3556 3889 6.998802 TGGTTTTAAATGAAATCATCCGGTT 58.001 32.000 0.00 0.00 35.10 4.44
3557 3890 6.597832 TGGTTTTAAATGAAATCATCCGGT 57.402 33.333 0.00 0.00 35.10 5.28
3558 3891 6.312672 GGTTGGTTTTAAATGAAATCATCCGG 59.687 38.462 0.00 0.00 32.70 5.14
3559 3892 6.870965 TGGTTGGTTTTAAATGAAATCATCCG 59.129 34.615 0.00 0.00 40.19 4.18
3560 3893 8.614469 TTGGTTGGTTTTAAATGAAATCATCC 57.386 30.769 0.00 4.79 38.83 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.