Multiple sequence alignment - TraesCS2D01G403900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G403900 chr2D 100.000 5309 0 0 1 5309 518602535 518597227 0.000000e+00 9804.0
1 TraesCS2D01G403900 chr2A 94.584 2345 75 15 663 2968 662748008 662745677 0.000000e+00 3579.0
2 TraesCS2D01G403900 chr2A 93.962 1706 74 10 3440 5138 662745300 662743617 0.000000e+00 2553.0
3 TraesCS2D01G403900 chr2A 96.774 341 6 3 3041 3376 662745629 662745289 9.980000e-157 564.0
4 TraesCS2D01G403900 chr2A 86.577 149 10 6 539 677 662749257 662749109 7.120000e-34 156.0
5 TraesCS2D01G403900 chr2A 95.699 93 4 0 11 103 397657852 397657760 3.310000e-32 150.0
6 TraesCS2D01G403900 chr2A 82.065 184 25 6 5130 5309 697293776 697293955 3.310000e-32 150.0
7 TraesCS2D01G403900 chr2B 95.539 2197 71 6 793 2968 610695466 610693276 0.000000e+00 3489.0
8 TraesCS2D01G403900 chr2B 95.529 917 35 1 3440 4356 610692903 610691993 0.000000e+00 1461.0
9 TraesCS2D01G403900 chr2B 93.289 745 44 4 4396 5138 610691723 610690983 0.000000e+00 1094.0
10 TraesCS2D01G403900 chr2B 97.923 337 6 1 3041 3376 610693228 610692892 2.760000e-162 582.0
11 TraesCS2D01G403900 chr2B 90.215 419 33 5 1 416 610698003 610697590 1.680000e-149 540.0
12 TraesCS2D01G403900 chr2B 90.980 255 10 2 501 754 610695705 610695463 1.100000e-86 331.0
13 TraesCS2D01G403900 chr2B 86.222 225 29 1 182 404 610844519 610844743 5.310000e-60 243.0
14 TraesCS2D01G403900 chr2B 85.463 227 26 5 184 404 163570682 163570457 4.140000e-56 230.0
15 TraesCS2D01G403900 chr2B 81.383 188 22 5 5134 5309 93069339 93069525 1.990000e-29 141.0
16 TraesCS2D01G403900 chr2B 94.737 76 4 0 424 499 610695845 610695770 9.340000e-23 119.0
17 TraesCS2D01G403900 chr2B 92.424 66 1 4 3374 3435 453955828 453955763 2.040000e-14 91.6
18 TraesCS2D01G403900 chr5D 82.033 846 126 20 1571 2400 369725213 369726048 0.000000e+00 697.0
19 TraesCS2D01G403900 chr5D 78.901 455 68 16 2513 2946 369726254 369726701 3.130000e-72 283.0
20 TraesCS2D01G403900 chr5D 84.153 183 17 3 5139 5309 421490170 421489988 3.290000e-37 167.0
21 TraesCS2D01G403900 chr5D 88.000 75 4 4 3371 3444 32068647 32068577 3.410000e-12 84.2
22 TraesCS2D01G403900 chr5B 81.797 846 128 20 1571 2400 439067172 439068007 0.000000e+00 686.0
23 TraesCS2D01G403900 chr5B 86.697 218 26 3 169 383 677578394 677578611 6.870000e-59 239.0
24 TraesCS2D01G403900 chr5B 84.659 176 20 5 5136 5309 544545178 544545348 9.140000e-38 169.0
25 TraesCS2D01G403900 chr5A 81.754 855 124 23 1565 2400 472284060 472284901 0.000000e+00 686.0
26 TraesCS2D01G403900 chr5A 79.029 453 71 14 2513 2946 472285113 472285560 6.730000e-74 289.0
27 TraesCS2D01G403900 chr5A 84.921 126 18 1 5135 5260 36930530 36930654 5.580000e-25 126.0
28 TraesCS2D01G403900 chr5A 92.424 66 3 2 3374 3437 114683650 114683715 5.660000e-15 93.5
29 TraesCS2D01G403900 chr6A 77.916 643 118 16 1764 2400 467043961 467044585 3.880000e-101 379.0
30 TraesCS2D01G403900 chr6A 93.939 66 1 2 3371 3436 184375551 184375489 4.380000e-16 97.1
31 TraesCS2D01G403900 chr6B 77.829 645 115 19 1764 2400 492190529 492191153 1.810000e-99 374.0
32 TraesCS2D01G403900 chr4D 78.369 601 113 10 1801 2400 494513394 494512810 1.810000e-99 374.0
33 TraesCS2D01G403900 chr4D 95.699 93 4 0 11 103 97366508 97366416 3.310000e-32 150.0
34 TraesCS2D01G403900 chr4D 95.699 93 4 0 11 103 442058955 442059047 3.310000e-32 150.0
35 TraesCS2D01G403900 chr6D 77.484 644 119 18 1764 2400 328330074 328330698 3.910000e-96 363.0
36 TraesCS2D01G403900 chr6D 84.444 135 19 2 5135 5267 291391022 291390888 1.200000e-26 132.0
37 TraesCS2D01G403900 chr6D 83.088 136 20 3 5135 5267 408696525 408696660 2.600000e-23 121.0
38 TraesCS2D01G403900 chr6D 92.424 66 4 1 3373 3437 437151345 437151410 5.660000e-15 93.5
39 TraesCS2D01G403900 chr7D 85.772 246 28 6 163 404 364105202 364104960 2.450000e-63 254.0
40 TraesCS2D01G403900 chr7D 83.750 240 36 2 168 404 469838861 469839100 1.920000e-54 224.0
41 TraesCS2D01G403900 chr7D 95.699 93 4 0 11 103 203532218 203532126 3.310000e-32 150.0
42 TraesCS2D01G403900 chr7D 80.000 185 22 11 5138 5309 127741777 127741595 7.220000e-24 122.0
43 TraesCS2D01G403900 chr7D 91.176 68 4 2 3370 3436 185191545 185191611 2.040000e-14 91.6
44 TraesCS2D01G403900 chr7A 85.294 238 31 4 169 404 393341277 393341512 5.310000e-60 243.0
45 TraesCS2D01G403900 chr7A 96.774 93 3 0 11 103 708239140 708239232 7.120000e-34 156.0
46 TraesCS2D01G403900 chr7A 94.915 59 3 0 3374 3432 688703582 688703640 5.660000e-15 93.5
47 TraesCS2D01G403900 chr1B 84.232 241 35 3 169 406 11931778 11931538 1.150000e-56 231.0
48 TraesCS2D01G403900 chr1B 84.574 188 15 6 5134 5309 606846136 606846321 1.970000e-39 174.0
49 TraesCS2D01G403900 chr1B 95.699 93 4 0 11 103 339018670 339018578 3.310000e-32 150.0
50 TraesCS2D01G403900 chr1B 81.818 176 30 2 5136 5309 626138209 626138034 4.280000e-31 147.0
51 TraesCS2D01G403900 chr1B 93.651 63 4 0 3374 3436 263946120 263946058 1.570000e-15 95.3
52 TraesCS2D01G403900 chr4B 83.133 249 39 3 159 404 652965549 652965797 1.920000e-54 224.0
53 TraesCS2D01G403900 chr3D 82.682 179 27 4 5133 5309 308748292 308748116 7.120000e-34 156.0
54 TraesCS2D01G403900 chrUn 95.699 93 4 0 11 103 223713504 223713596 3.310000e-32 150.0
55 TraesCS2D01G403900 chrUn 95.699 93 4 0 11 103 257857622 257857530 3.310000e-32 150.0
56 TraesCS2D01G403900 chr1D 82.530 166 25 4 5134 5298 85641870 85641708 5.540000e-30 143.0
57 TraesCS2D01G403900 chr1A 86.822 129 16 1 5138 5265 299650145 299650273 5.540000e-30 143.0
58 TraesCS2D01G403900 chr3B 91.176 68 3 3 3371 3438 829355600 829355536 7.320000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G403900 chr2D 518597227 518602535 5308 True 9804.0 9804 100.000000 1 5309 1 chr2D.!!$R1 5308
1 TraesCS2D01G403900 chr2A 662743617 662749257 5640 True 1713.0 3579 92.974250 539 5138 4 chr2A.!!$R2 4599
2 TraesCS2D01G403900 chr2B 610690983 610698003 7020 True 1088.0 3489 94.030286 1 5138 7 chr2B.!!$R3 5137
3 TraesCS2D01G403900 chr5D 369725213 369726701 1488 False 490.0 697 80.467000 1571 2946 2 chr5D.!!$F1 1375
4 TraesCS2D01G403900 chr5B 439067172 439068007 835 False 686.0 686 81.797000 1571 2400 1 chr5B.!!$F1 829
5 TraesCS2D01G403900 chr5A 472284060 472285560 1500 False 487.5 686 80.391500 1565 2946 2 chr5A.!!$F3 1381
6 TraesCS2D01G403900 chr6A 467043961 467044585 624 False 379.0 379 77.916000 1764 2400 1 chr6A.!!$F1 636
7 TraesCS2D01G403900 chr6B 492190529 492191153 624 False 374.0 374 77.829000 1764 2400 1 chr6B.!!$F1 636
8 TraesCS2D01G403900 chr4D 494512810 494513394 584 True 374.0 374 78.369000 1801 2400 1 chr4D.!!$R2 599
9 TraesCS2D01G403900 chr6D 328330074 328330698 624 False 363.0 363 77.484000 1764 2400 1 chr6D.!!$F1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 82 0.102481 GCGAGGCCAGATCTACGAAA 59.898 55.0 5.01 0.00 0.00 3.46 F
1332 4294 0.321298 GCAACTTCCTACGGAGGCAA 60.321 55.0 9.59 3.47 43.40 4.52 F
2960 6051 0.170561 GTGGTACGTGATGCTCTCGT 59.829 55.0 14.42 14.42 46.39 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 4847 0.107456 CCGGTCCATTCCAGGATGAG 59.893 60.0 0.00 0.0 40.42 2.9 R
2967 6058 0.040058 TGAGATTGCAAGGTGGCCAT 59.960 50.0 9.72 0.0 0.00 4.4 R
4319 7427 0.106967 GTCATCTTGCCTTCCCCTCC 60.107 60.0 0.00 0.0 0.00 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 4.802248 GCAAGAGCAAGAGAAGAGAAAGGA 60.802 45.833 0.00 0.00 41.58 3.36
73 75 2.279120 CGAGTGCGAGGCCAGATC 60.279 66.667 5.01 0.00 40.82 2.75
75 77 1.448119 CGAGTGCGAGGCCAGATCTA 61.448 60.000 5.01 0.00 40.82 1.98
80 82 0.102481 GCGAGGCCAGATCTACGAAA 59.898 55.000 5.01 0.00 0.00 3.46
84 86 1.482593 AGGCCAGATCTACGAAACCAG 59.517 52.381 5.01 0.00 0.00 4.00
85 87 1.207329 GGCCAGATCTACGAAACCAGT 59.793 52.381 0.00 0.00 0.00 4.00
96 98 2.228822 ACGAAACCAGTTTGATGCATCC 59.771 45.455 23.67 8.72 32.11 3.51
107 109 0.458370 GATGCATCCAACGGGTTTGC 60.458 55.000 16.23 0.90 41.60 3.68
111 113 1.135402 GCATCCAACGGGTTTGCTTAG 60.135 52.381 0.69 0.00 39.61 2.18
115 117 2.158726 TCCAACGGGTTTGCTTAGAACT 60.159 45.455 0.00 0.00 33.34 3.01
117 119 3.550030 CCAACGGGTTTGCTTAGAACTTG 60.550 47.826 0.00 0.00 33.34 3.16
140 142 4.712122 AACTTGTAACACTTTGTGGTGG 57.288 40.909 0.00 0.00 41.09 4.61
173 175 7.916914 TGCCCACTCTTTTCTTTAATACTAC 57.083 36.000 0.00 0.00 0.00 2.73
176 178 9.609346 GCCCACTCTTTTCTTTAATACTACATA 57.391 33.333 0.00 0.00 0.00 2.29
196 198 9.396022 CTACATATGTTCTGGTTTATTTGTCCT 57.604 33.333 14.77 0.00 0.00 3.85
197 199 8.281212 ACATATGTTCTGGTTTATTTGTCCTC 57.719 34.615 1.41 0.00 0.00 3.71
199 201 8.960591 CATATGTTCTGGTTTATTTGTCCTCTT 58.039 33.333 0.00 0.00 0.00 2.85
227 229 7.795482 ATTTTATGCCACATTTTGATCATGG 57.205 32.000 7.77 7.77 0.00 3.66
268 271 9.502145 ACGTTAATGCATGTCATAAAAATAGTG 57.498 29.630 0.00 0.00 34.33 2.74
275 278 8.738106 TGCATGTCATAAAAATAGTGTCATTGA 58.262 29.630 0.00 0.00 0.00 2.57
298 301 7.981142 TGAAAACTATGTTCAAATACGGATCC 58.019 34.615 0.00 0.00 32.13 3.36
302 305 4.875544 ATGTTCAAATACGGATCCAACG 57.124 40.909 13.41 0.00 37.36 4.10
385 388 6.945435 TGACACACAATACAAAGGACCAATAT 59.055 34.615 0.00 0.00 0.00 1.28
386 389 7.094420 TGACACACAATACAAAGGACCAATATG 60.094 37.037 0.00 0.00 0.00 1.78
416 419 5.006455 ACGGAGATAGTATATGATACGCACG 59.994 44.000 0.00 0.00 0.00 5.34
435 2175 1.062148 CGAGTGCACGTATTCGAGAGA 59.938 52.381 18.33 0.00 40.62 3.10
499 2239 0.390735 CAAATGCAAGCAAGGAGGCC 60.391 55.000 0.00 0.00 0.00 5.19
504 2307 2.930562 AAGCAAGGAGGCCGGTCT 60.931 61.111 9.26 9.26 0.00 3.85
587 2393 4.596585 CACCACCCCCGCCAACTT 62.597 66.667 0.00 0.00 0.00 2.66
641 2454 1.856265 CTTCCCTTCAGCAACCACGC 61.856 60.000 0.00 0.00 0.00 5.34
763 3691 1.710339 GCTGCTTTTAGCTCGGTCG 59.290 57.895 0.00 0.00 42.97 4.79
764 3692 1.014564 GCTGCTTTTAGCTCGGTCGT 61.015 55.000 0.00 0.00 42.97 4.34
1019 3951 2.416972 CCGTCTAGGAGTTGCTGGTTAC 60.417 54.545 0.00 0.00 45.00 2.50
1328 4290 0.460311 ATCGGCAACTTCCTACGGAG 59.540 55.000 0.00 0.00 31.21 4.63
1332 4294 0.321298 GCAACTTCCTACGGAGGCAA 60.321 55.000 9.59 3.47 43.40 4.52
1471 4433 1.140407 CCGCGTCTCGTTCCAAGATC 61.140 60.000 4.92 0.00 36.19 2.75
2712 5791 3.167485 TGCTGCCAAGAAGATTTTCCAT 58.833 40.909 0.00 0.00 33.64 3.41
2743 5822 5.186198 CCAAACCTGGATCCAAGTAAGTAG 58.814 45.833 16.48 1.37 46.92 2.57
2744 5823 5.186198 CAAACCTGGATCCAAGTAAGTAGG 58.814 45.833 16.48 13.00 0.00 3.18
2745 5824 4.076175 ACCTGGATCCAAGTAAGTAGGT 57.924 45.455 14.63 12.77 32.74 3.08
2746 5825 5.216665 ACCTGGATCCAAGTAAGTAGGTA 57.783 43.478 14.63 0.00 35.66 3.08
2787 5866 1.063006 CGCCATGTCGAAATGCTGG 59.937 57.895 10.30 0.00 0.00 4.85
2792 5871 2.868583 CCATGTCGAAATGCTGGTCTAG 59.131 50.000 10.30 0.00 0.00 2.43
2826 5917 2.554142 ACGATGATACACAGGCACATG 58.446 47.619 0.00 0.00 0.00 3.21
2835 5926 2.158827 ACACAGGCACATGTACTTGTCA 60.159 45.455 10.69 0.00 0.00 3.58
2839 5930 4.005650 CAGGCACATGTACTTGTCAGATT 58.994 43.478 11.23 0.00 0.00 2.40
2952 6043 1.640917 AGAACTGGGTGGTACGTGAT 58.359 50.000 0.00 0.00 0.00 3.06
2958 6049 0.179108 GGGTGGTACGTGATGCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
2959 6050 0.525668 GGTGGTACGTGATGCTCTCG 60.526 60.000 0.00 6.22 39.05 4.04
2960 6051 0.170561 GTGGTACGTGATGCTCTCGT 59.829 55.000 14.42 14.42 46.39 4.18
2961 6052 0.450583 TGGTACGTGATGCTCTCGTC 59.549 55.000 13.72 8.17 41.96 4.20
2962 6053 0.733729 GGTACGTGATGCTCTCGTCT 59.266 55.000 13.72 0.00 41.96 4.18
2963 6054 1.268133 GGTACGTGATGCTCTCGTCTC 60.268 57.143 13.72 9.90 41.96 3.36
2964 6055 0.651031 TACGTGATGCTCTCGTCTCG 59.349 55.000 13.72 7.23 41.96 4.04
2965 6056 1.019805 ACGTGATGCTCTCGTCTCGA 61.020 55.000 13.53 0.00 41.96 4.04
2966 6057 0.587737 CGTGATGCTCTCGTCTCGAC 60.588 60.000 3.73 0.00 43.80 4.20
2967 6058 0.448197 GTGATGCTCTCGTCTCGACA 59.552 55.000 0.00 0.00 0.00 4.35
2968 6059 1.064803 GTGATGCTCTCGTCTCGACAT 59.935 52.381 0.00 0.00 0.00 3.06
2969 6060 1.064654 TGATGCTCTCGTCTCGACATG 59.935 52.381 0.00 0.00 0.00 3.21
2970 6061 0.383590 ATGCTCTCGTCTCGACATGG 59.616 55.000 0.00 0.00 0.00 3.66
2971 6062 1.587613 GCTCTCGTCTCGACATGGC 60.588 63.158 0.00 0.00 0.00 4.40
2972 6063 1.064946 CTCTCGTCTCGACATGGCC 59.935 63.158 0.00 0.00 0.00 5.36
2973 6064 1.657751 CTCTCGTCTCGACATGGCCA 61.658 60.000 8.56 8.56 0.00 5.36
2974 6065 1.517257 CTCGTCTCGACATGGCCAC 60.517 63.158 8.16 0.00 0.00 5.01
2975 6066 2.509336 CGTCTCGACATGGCCACC 60.509 66.667 8.16 0.00 0.00 4.61
2976 6067 2.982130 GTCTCGACATGGCCACCT 59.018 61.111 8.16 0.00 0.00 4.00
2977 6068 1.296715 GTCTCGACATGGCCACCTT 59.703 57.895 8.16 0.00 0.00 3.50
2978 6069 1.021390 GTCTCGACATGGCCACCTTG 61.021 60.000 8.16 5.14 35.21 3.61
2979 6070 2.359850 TCGACATGGCCACCTTGC 60.360 61.111 8.16 0.00 32.73 4.01
2980 6071 2.672651 CGACATGGCCACCTTGCA 60.673 61.111 8.16 0.00 32.73 4.08
2981 6072 2.267351 CGACATGGCCACCTTGCAA 61.267 57.895 8.16 0.00 32.73 4.08
2982 6073 1.597797 CGACATGGCCACCTTGCAAT 61.598 55.000 8.16 0.00 32.73 3.56
2983 6074 0.174162 GACATGGCCACCTTGCAATC 59.826 55.000 8.16 0.00 32.73 2.67
2984 6075 0.251922 ACATGGCCACCTTGCAATCT 60.252 50.000 8.16 0.00 32.73 2.40
2985 6076 0.458669 CATGGCCACCTTGCAATCTC 59.541 55.000 8.16 0.00 0.00 2.75
2986 6077 0.040058 ATGGCCACCTTGCAATCTCA 59.960 50.000 8.16 0.00 0.00 3.27
2987 6078 0.609957 TGGCCACCTTGCAATCTCAG 60.610 55.000 0.00 0.00 0.00 3.35
2988 6079 0.610232 GGCCACCTTGCAATCTCAGT 60.610 55.000 0.00 0.00 0.00 3.41
2989 6080 1.340017 GGCCACCTTGCAATCTCAGTA 60.340 52.381 0.00 0.00 0.00 2.74
2990 6081 2.012673 GCCACCTTGCAATCTCAGTAG 58.987 52.381 0.00 0.00 0.00 2.57
2991 6082 2.355108 GCCACCTTGCAATCTCAGTAGA 60.355 50.000 0.00 0.00 35.80 2.59
2992 6083 3.683847 GCCACCTTGCAATCTCAGTAGAT 60.684 47.826 0.00 0.00 44.67 1.98
2993 6084 4.125703 CCACCTTGCAATCTCAGTAGATC 58.874 47.826 0.00 0.00 41.81 2.75
2994 6085 4.141756 CCACCTTGCAATCTCAGTAGATCT 60.142 45.833 0.00 0.00 41.81 2.75
2995 6086 5.049167 CACCTTGCAATCTCAGTAGATCTC 58.951 45.833 0.00 0.00 41.81 2.75
2996 6087 4.100808 ACCTTGCAATCTCAGTAGATCTCC 59.899 45.833 0.00 0.00 41.81 3.71
2997 6088 4.100653 CCTTGCAATCTCAGTAGATCTCCA 59.899 45.833 0.00 0.00 41.81 3.86
2998 6089 4.933505 TGCAATCTCAGTAGATCTCCAG 57.066 45.455 0.00 0.00 41.81 3.86
3001 6092 4.442612 GCAATCTCAGTAGATCTCCAGCAA 60.443 45.833 0.00 0.00 41.81 3.91
3009 6100 3.460857 AGATCTCCAGCAATCCGTTAC 57.539 47.619 0.00 0.00 0.00 2.50
3018 6109 2.933906 AGCAATCCGTTACCAACATACG 59.066 45.455 0.00 0.00 35.20 3.06
3024 6118 1.127213 CGTTACCAACATACGTGTGGC 59.873 52.381 17.05 0.00 38.92 5.01
3354 6457 1.988107 TGCAGGTCAAAGATTCTCCCT 59.012 47.619 0.00 0.00 0.00 4.20
3357 6460 1.065854 AGGTCAAAGATTCTCCCTGCG 60.066 52.381 0.00 0.00 0.00 5.18
3373 6477 0.674581 TGCGCTGCTGCTTTACTGAT 60.675 50.000 9.73 0.00 36.97 2.90
3376 6480 2.669391 GCGCTGCTGCTTTACTGATTTT 60.669 45.455 14.03 0.00 36.97 1.82
3377 6481 3.568538 CGCTGCTGCTTTACTGATTTTT 58.431 40.909 14.03 0.00 36.97 1.94
3378 6482 3.605486 CGCTGCTGCTTTACTGATTTTTC 59.395 43.478 14.03 0.00 36.97 2.29
3379 6483 4.614535 CGCTGCTGCTTTACTGATTTTTCT 60.615 41.667 14.03 0.00 36.97 2.52
3380 6484 5.225642 GCTGCTGCTTTACTGATTTTTCTT 58.774 37.500 8.53 0.00 36.03 2.52
3381 6485 5.693555 GCTGCTGCTTTACTGATTTTTCTTT 59.306 36.000 8.53 0.00 36.03 2.52
3382 6486 6.201615 GCTGCTGCTTTACTGATTTTTCTTTT 59.798 34.615 8.53 0.00 36.03 2.27
3383 6487 7.254556 GCTGCTGCTTTACTGATTTTTCTTTTT 60.255 33.333 8.53 0.00 36.03 1.94
3410 6514 2.447959 GGTTATCCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
3411 6515 2.819284 GGTTATCCCCCGGCCTCTG 61.819 68.421 0.00 0.00 0.00 3.35
3412 6516 3.168528 TTATCCCCCGGCCTCTGC 61.169 66.667 0.00 0.00 0.00 4.26
3413 6517 4.490606 TATCCCCCGGCCTCTGCA 62.491 66.667 0.00 0.00 40.13 4.41
3414 6518 3.792325 TATCCCCCGGCCTCTGCAT 62.792 63.158 0.00 0.00 40.13 3.96
3417 6521 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3418 6522 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3419 6523 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3420 6524 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
3421 6525 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
3422 6526 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
3423 6527 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
3432 6536 2.473816 CATCAGAACGATGCATACGGT 58.526 47.619 18.34 13.97 44.95 4.83
3433 6537 2.203800 TCAGAACGATGCATACGGTC 57.796 50.000 21.43 21.43 46.03 4.79
3438 6542 3.377439 GAACGATGCATACGGTCATACA 58.623 45.455 23.01 0.00 45.18 2.29
3439 6543 2.739292 ACGATGCATACGGTCATACAC 58.261 47.619 18.34 0.00 34.93 2.90
3440 6544 2.361119 ACGATGCATACGGTCATACACT 59.639 45.455 18.34 0.00 34.93 3.55
3441 6545 3.181479 ACGATGCATACGGTCATACACTT 60.181 43.478 18.34 0.00 34.93 3.16
3442 6546 3.802139 CGATGCATACGGTCATACACTTT 59.198 43.478 0.00 0.00 0.00 2.66
3443 6547 4.979815 CGATGCATACGGTCATACACTTTA 59.020 41.667 0.00 0.00 0.00 1.85
3444 6548 5.107989 CGATGCATACGGTCATACACTTTAC 60.108 44.000 0.00 0.00 0.00 2.01
3445 6549 5.333299 TGCATACGGTCATACACTTTACT 57.667 39.130 0.00 0.00 0.00 2.24
3446 6550 5.106442 TGCATACGGTCATACACTTTACTG 58.894 41.667 0.00 0.00 0.00 2.74
3447 6551 5.105675 TGCATACGGTCATACACTTTACTGA 60.106 40.000 0.00 0.00 0.00 3.41
3448 6552 5.808540 GCATACGGTCATACACTTTACTGAA 59.191 40.000 0.00 0.00 0.00 3.02
3449 6553 6.479001 GCATACGGTCATACACTTTACTGAAT 59.521 38.462 0.00 0.00 0.00 2.57
3450 6554 7.011109 GCATACGGTCATACACTTTACTGAATT 59.989 37.037 0.00 0.00 0.00 2.17
3455 6559 7.095397 CGGTCATACACTTTACTGAATTGACAA 60.095 37.037 0.00 0.00 34.19 3.18
3474 6578 6.333416 TGACAAACGAGATTCTTCAGGATAG 58.667 40.000 0.00 0.00 0.00 2.08
3603 6707 2.123428 GCTCGCCATCTTGCCCATT 61.123 57.895 0.00 0.00 0.00 3.16
3793 6901 7.065443 ACGCCACTTATATTTTGGTTCTACTTC 59.935 37.037 0.00 0.00 32.50 3.01
3815 6923 7.177744 ACTTCAACTTTGTTGAGTTTCCCTTTA 59.822 33.333 12.04 0.00 37.76 1.85
3852 6960 7.588143 ATTTCAGTTATCTCGACAACAAGAG 57.412 36.000 3.45 0.00 35.91 2.85
4012 7120 5.304871 TCTCCAGGAGATGATGAAGATTCTG 59.695 44.000 15.98 0.00 33.35 3.02
4018 7126 7.014449 AGGAGATGATGAAGATTCTGAGAGAT 58.986 38.462 0.00 0.00 0.00 2.75
4069 7177 0.802494 ACATCAATGTTCGGAACGCC 59.198 50.000 15.52 0.00 42.00 5.68
4144 7252 6.418057 AATTTGTTACCATGTGTCACCAAT 57.582 33.333 0.00 0.00 0.00 3.16
4147 7255 5.193663 TGTTACCATGTGTCACCAATTTG 57.806 39.130 0.00 0.00 0.00 2.32
4151 7259 7.231519 TGTTACCATGTGTCACCAATTTGATTA 59.768 33.333 0.00 0.00 0.00 1.75
4163 7271 6.016360 CACCAATTTGATTAGTGAGGTTGTGA 60.016 38.462 0.00 0.00 34.45 3.58
4167 7275 7.823745 ATTTGATTAGTGAGGTTGTGAACTT 57.176 32.000 0.00 0.00 0.00 2.66
4257 7365 2.749280 TGCTGACGAGAACATGATGT 57.251 45.000 0.00 0.00 0.00 3.06
4306 7414 3.912563 GGTTTTACGCTTAGCTTTTGAGC 59.087 43.478 1.76 0.00 35.19 4.26
4319 7427 2.210144 TTTGAGCGATGGGGGAAGGG 62.210 60.000 0.00 0.00 0.00 3.95
4320 7428 3.878667 GAGCGATGGGGGAAGGGG 61.879 72.222 0.00 0.00 0.00 4.79
4323 7431 3.171388 CGATGGGGGAAGGGGAGG 61.171 72.222 0.00 0.00 0.00 4.30
4341 7449 0.259938 GGGGAAGGCAAGATGACCAT 59.740 55.000 0.00 0.00 0.00 3.55
4342 7450 1.342374 GGGGAAGGCAAGATGACCATT 60.342 52.381 0.00 0.00 0.00 3.16
4343 7451 1.753073 GGGAAGGCAAGATGACCATTG 59.247 52.381 0.00 0.00 0.00 2.82
4344 7452 2.450476 GGAAGGCAAGATGACCATTGT 58.550 47.619 0.00 0.00 0.00 2.71
4345 7453 2.827921 GGAAGGCAAGATGACCATTGTT 59.172 45.455 0.00 0.00 0.00 2.83
4346 7454 3.367703 GGAAGGCAAGATGACCATTGTTG 60.368 47.826 0.00 0.00 0.00 3.33
4347 7455 2.880443 AGGCAAGATGACCATTGTTGT 58.120 42.857 0.00 0.00 0.00 3.32
4348 7456 3.233507 AGGCAAGATGACCATTGTTGTT 58.766 40.909 0.00 0.00 0.00 2.83
4349 7457 3.006110 AGGCAAGATGACCATTGTTGTTG 59.994 43.478 0.00 0.00 0.00 3.33
4350 7458 3.243839 GGCAAGATGACCATTGTTGTTGT 60.244 43.478 0.00 0.00 0.00 3.32
4351 7459 4.370917 GCAAGATGACCATTGTTGTTGTT 58.629 39.130 0.00 0.00 0.00 2.83
4352 7460 4.209703 GCAAGATGACCATTGTTGTTGTTG 59.790 41.667 0.00 0.00 0.00 3.33
4387 7495 3.804036 TGGAGTTAAGTGCAATATCGGG 58.196 45.455 1.46 0.00 0.00 5.14
4404 7754 3.322501 GGGGGATGAAAAGGCCATT 57.677 52.632 5.01 0.00 0.00 3.16
4489 7839 4.952460 AGCCGCGGATAATTACTTCTTAA 58.048 39.130 33.48 0.00 0.00 1.85
4523 7873 5.812642 CCTCTAGTTCGTATGAAAAGCACAT 59.187 40.000 0.00 0.00 35.46 3.21
4568 7918 1.447317 GCCGCCACCATGACCTAATG 61.447 60.000 0.00 0.00 0.00 1.90
4575 7925 1.003118 ACCATGACCTAATGTGCACGT 59.997 47.619 13.13 9.52 0.00 4.49
4638 7988 6.825213 TCTTTCTCTATGTATGTTGCTGCATT 59.175 34.615 1.84 0.00 0.00 3.56
4684 8034 9.900710 TTGTTGTTATGTGTTACATTGTAATCC 57.099 29.630 12.16 6.93 39.88 3.01
4967 8319 5.861222 AAACAATGAAATTTGATTCGGGC 57.139 34.783 0.00 0.00 31.22 6.13
5045 8397 9.674068 TCACTATCTAGCTATCGACTTGATTAT 57.326 33.333 0.00 0.00 38.57 1.28
5078 8431 3.566322 CCGCGATTAACATTAATGGGGAA 59.434 43.478 19.37 10.21 41.18 3.97
5091 8444 3.810188 GGGAAGTGGGCCCCTAGC 61.810 72.222 22.27 11.32 39.81 3.42
5101 8454 0.470341 GGCCCCTAGCTTAGGTCTTG 59.530 60.000 0.00 0.00 44.73 3.02
5116 8469 1.746615 CTTGTCATGGGGTGAGGCG 60.747 63.158 0.00 0.00 37.56 5.52
5138 8491 1.429299 GGGATCCCATTTCCCCCTTAG 59.571 57.143 26.95 0.00 46.20 2.18
5139 8492 2.428901 GGATCCCATTTCCCCCTTAGA 58.571 52.381 0.00 0.00 0.00 2.10
5140 8493 2.376855 GGATCCCATTTCCCCCTTAGAG 59.623 54.545 0.00 0.00 0.00 2.43
5141 8494 2.680439 TCCCATTTCCCCCTTAGAGT 57.320 50.000 0.00 0.00 0.00 3.24
5142 8495 3.807288 TCCCATTTCCCCCTTAGAGTA 57.193 47.619 0.00 0.00 0.00 2.59
5143 8496 4.311208 TCCCATTTCCCCCTTAGAGTAT 57.689 45.455 0.00 0.00 0.00 2.12
5144 8497 4.240323 TCCCATTTCCCCCTTAGAGTATC 58.760 47.826 0.00 0.00 0.00 2.24
5156 8509 3.553597 GAGTATCTCCAGCCGTTCG 57.446 57.895 0.00 0.00 0.00 3.95
5157 8510 0.030908 GAGTATCTCCAGCCGTTCGG 59.969 60.000 6.90 6.90 0.00 4.30
5176 8529 2.745037 CCCCCAGGACGTCGAAAA 59.255 61.111 9.92 0.00 33.47 2.29
5177 8530 1.071814 CCCCCAGGACGTCGAAAAA 59.928 57.895 9.92 0.00 33.47 1.94
5178 8531 0.953960 CCCCCAGGACGTCGAAAAAG 60.954 60.000 9.92 0.00 33.47 2.27
5179 8532 0.250166 CCCCAGGACGTCGAAAAAGT 60.250 55.000 9.92 0.00 0.00 2.66
5180 8533 0.865769 CCCAGGACGTCGAAAAAGTG 59.134 55.000 9.92 0.00 0.00 3.16
5181 8534 0.234884 CCAGGACGTCGAAAAAGTGC 59.765 55.000 9.92 0.00 0.00 4.40
5182 8535 0.234884 CAGGACGTCGAAAAAGTGCC 59.765 55.000 9.92 0.00 0.00 5.01
5183 8536 1.203313 GGACGTCGAAAAAGTGCCG 59.797 57.895 9.92 0.00 0.00 5.69
5184 8537 1.493134 GGACGTCGAAAAAGTGCCGT 61.493 55.000 9.92 0.00 0.00 5.68
5185 8538 0.302589 GACGTCGAAAAAGTGCCGTT 59.697 50.000 0.00 0.00 0.00 4.44
5186 8539 0.728542 ACGTCGAAAAAGTGCCGTTT 59.271 45.000 0.00 0.00 0.00 3.60
5187 8540 1.109296 CGTCGAAAAAGTGCCGTTTG 58.891 50.000 0.00 0.00 0.00 2.93
5188 8541 1.472990 GTCGAAAAAGTGCCGTTTGG 58.527 50.000 0.00 0.00 38.77 3.28
5189 8542 0.382515 TCGAAAAAGTGCCGTTTGGG 59.617 50.000 0.00 0.00 39.58 4.12
5190 8543 0.596341 CGAAAAAGTGCCGTTTGGGG 60.596 55.000 0.00 0.00 35.78 4.96
5208 8561 2.433664 CCGAACCGGCGCTTACTT 60.434 61.111 7.64 0.00 41.17 2.24
5209 8562 2.030958 CCGAACCGGCGCTTACTTT 61.031 57.895 7.64 0.00 41.17 2.66
5210 8563 1.418755 CGAACCGGCGCTTACTTTC 59.581 57.895 7.64 2.63 0.00 2.62
5211 8564 1.418755 GAACCGGCGCTTACTTTCG 59.581 57.895 7.64 0.00 0.00 3.46
5212 8565 1.963190 GAACCGGCGCTTACTTTCGG 61.963 60.000 15.88 15.88 45.42 4.30
5213 8566 3.861263 CCGGCGCTTACTTTCGGC 61.861 66.667 7.64 0.00 45.92 5.54
5217 8570 2.776072 CGCTTACTTTCGGCGTGG 59.224 61.111 6.85 0.61 43.28 4.94
5218 8571 2.736682 CGCTTACTTTCGGCGTGGG 61.737 63.158 6.85 0.22 43.28 4.61
5219 8572 2.396157 GCTTACTTTCGGCGTGGGG 61.396 63.158 6.85 0.00 0.00 4.96
5220 8573 1.743995 CTTACTTTCGGCGTGGGGG 60.744 63.158 6.85 0.00 0.00 5.40
5221 8574 3.905437 TTACTTTCGGCGTGGGGGC 62.905 63.158 6.85 0.00 37.98 5.80
5224 8577 4.669809 TTTCGGCGTGGGGGCAAT 62.670 61.111 6.85 0.00 42.43 3.56
5225 8578 4.669809 TTCGGCGTGGGGGCAATT 62.670 61.111 6.85 0.00 42.43 2.32
5230 8583 3.679738 CGTGGGGGCAATTGCGTT 61.680 61.111 23.48 0.00 43.26 4.84
5231 8584 2.261361 GTGGGGGCAATTGCGTTC 59.739 61.111 23.48 14.96 43.26 3.95
5232 8585 2.994417 TGGGGGCAATTGCGTTCC 60.994 61.111 23.48 22.09 43.26 3.62
5233 8586 2.679996 GGGGGCAATTGCGTTCCT 60.680 61.111 23.48 0.00 43.26 3.36
5234 8587 1.379309 GGGGGCAATTGCGTTCCTA 60.379 57.895 23.48 0.00 43.26 2.94
5235 8588 1.384222 GGGGGCAATTGCGTTCCTAG 61.384 60.000 23.48 0.00 43.26 3.02
5236 8589 0.679960 GGGGCAATTGCGTTCCTAGT 60.680 55.000 23.48 0.00 43.26 2.57
5237 8590 1.173913 GGGCAATTGCGTTCCTAGTT 58.826 50.000 23.48 0.00 43.26 2.24
5238 8591 1.135402 GGGCAATTGCGTTCCTAGTTG 60.135 52.381 23.48 0.00 43.26 3.16
5239 8592 1.539827 GGCAATTGCGTTCCTAGTTGT 59.460 47.619 23.48 0.00 43.26 3.32
5240 8593 2.414161 GGCAATTGCGTTCCTAGTTGTC 60.414 50.000 23.48 1.66 43.26 3.18
5241 8594 2.724839 GCAATTGCGTTCCTAGTTGTCG 60.725 50.000 15.87 0.00 0.00 4.35
5242 8595 1.076332 ATTGCGTTCCTAGTTGTCGC 58.924 50.000 10.37 10.37 45.70 5.19
5243 8596 0.947180 TTGCGTTCCTAGTTGTCGCC 60.947 55.000 13.27 1.41 45.06 5.54
5244 8597 2.098831 GCGTTCCTAGTTGTCGCCC 61.099 63.158 0.00 0.00 40.83 6.13
5245 8598 1.447314 CGTTCCTAGTTGTCGCCCC 60.447 63.158 0.00 0.00 0.00 5.80
5246 8599 1.675219 GTTCCTAGTTGTCGCCCCA 59.325 57.895 0.00 0.00 0.00 4.96
5247 8600 0.035739 GTTCCTAGTTGTCGCCCCAA 59.964 55.000 0.00 0.00 0.00 4.12
5248 8601 0.035739 TTCCTAGTTGTCGCCCCAAC 59.964 55.000 5.26 5.26 44.00 3.77
5252 8605 3.047877 GTTGTCGCCCCAACTCGG 61.048 66.667 6.01 0.00 41.17 4.63
5259 8612 4.038080 CCCCAACTCGGCGCAAAC 62.038 66.667 10.83 0.00 0.00 2.93
5260 8613 2.978010 CCCAACTCGGCGCAAACT 60.978 61.111 10.83 0.00 0.00 2.66
5261 8614 2.556287 CCAACTCGGCGCAAACTC 59.444 61.111 10.83 0.00 0.00 3.01
5262 8615 2.170985 CAACTCGGCGCAAACTCG 59.829 61.111 10.83 2.53 0.00 4.18
5263 8616 3.041940 AACTCGGCGCAAACTCGG 61.042 61.111 10.83 0.00 0.00 4.63
5272 8625 3.996825 GCAAACTCGGCGATTTGAT 57.003 47.368 30.57 11.89 37.91 2.57
5273 8626 2.262572 GCAAACTCGGCGATTTGATT 57.737 45.000 30.57 13.90 37.91 2.57
5274 8627 3.398954 GCAAACTCGGCGATTTGATTA 57.601 42.857 30.57 5.06 37.91 1.75
5275 8628 3.354397 GCAAACTCGGCGATTTGATTAG 58.646 45.455 30.57 14.99 37.91 1.73
5276 8629 3.063452 GCAAACTCGGCGATTTGATTAGA 59.937 43.478 30.57 3.81 37.91 2.10
5277 8630 4.436852 GCAAACTCGGCGATTTGATTAGAA 60.437 41.667 30.57 3.37 37.91 2.10
5278 8631 5.730568 GCAAACTCGGCGATTTGATTAGAAT 60.731 40.000 30.57 9.01 37.91 2.40
5279 8632 6.258160 CAAACTCGGCGATTTGATTAGAATT 58.742 36.000 26.21 4.66 37.91 2.17
5280 8633 5.659048 ACTCGGCGATTTGATTAGAATTC 57.341 39.130 11.27 0.00 0.00 2.17
5281 8634 4.209288 ACTCGGCGATTTGATTAGAATTCG 59.791 41.667 11.27 0.00 33.77 3.34
5282 8635 3.493129 TCGGCGATTTGATTAGAATTCGG 59.507 43.478 4.99 0.00 32.14 4.30
5283 8636 3.555518 GGCGATTTGATTAGAATTCGGC 58.444 45.455 0.00 0.00 42.82 5.54
5284 8637 3.003275 GGCGATTTGATTAGAATTCGGCA 59.997 43.478 15.03 0.00 45.79 5.69
5285 8638 3.968724 GCGATTTGATTAGAATTCGGCAC 59.031 43.478 0.00 0.00 32.14 5.01
5286 8639 4.495679 GCGATTTGATTAGAATTCGGCACA 60.496 41.667 0.00 0.00 32.14 4.57
5287 8640 5.568482 CGATTTGATTAGAATTCGGCACAA 58.432 37.500 0.00 3.82 0.00 3.33
5288 8641 6.027131 CGATTTGATTAGAATTCGGCACAAA 58.973 36.000 18.21 18.21 0.00 2.83
5289 8642 6.021468 CGATTTGATTAGAATTCGGCACAAAC 60.021 38.462 18.24 13.65 0.00 2.93
5290 8643 5.957842 TTGATTAGAATTCGGCACAAACT 57.042 34.783 0.00 0.00 0.00 2.66
5291 8644 5.545658 TGATTAGAATTCGGCACAAACTC 57.454 39.130 0.00 0.00 0.00 3.01
5292 8645 4.092821 TGATTAGAATTCGGCACAAACTCG 59.907 41.667 0.00 0.00 0.00 4.18
5293 8646 1.156736 AGAATTCGGCACAAACTCGG 58.843 50.000 0.00 0.00 0.00 4.63
5294 8647 0.454452 GAATTCGGCACAAACTCGGC 60.454 55.000 0.00 0.00 0.00 5.54
5298 8651 3.263941 GGCACAAACTCGGCGATT 58.736 55.556 11.27 0.37 0.00 3.34
5299 8652 1.579429 GGCACAAACTCGGCGATTT 59.421 52.632 11.27 8.70 0.00 2.17
5300 8653 0.039527 GGCACAAACTCGGCGATTTT 60.040 50.000 17.94 17.94 0.00 1.82
5301 8654 1.601914 GGCACAAACTCGGCGATTTTT 60.602 47.619 20.55 15.04 0.00 1.94
5302 8655 1.713932 GCACAAACTCGGCGATTTTTC 59.286 47.619 20.55 10.46 0.00 2.29
5303 8656 2.856720 GCACAAACTCGGCGATTTTTCA 60.857 45.455 20.55 0.00 0.00 2.69
5304 8657 3.564511 CACAAACTCGGCGATTTTTCAT 58.435 40.909 20.55 8.40 0.00 2.57
5305 8658 3.980775 CACAAACTCGGCGATTTTTCATT 59.019 39.130 20.55 5.11 0.00 2.57
5306 8659 4.088496 CACAAACTCGGCGATTTTTCATTC 59.912 41.667 20.55 0.00 0.00 2.67
5307 8660 4.225984 CAAACTCGGCGATTTTTCATTCA 58.774 39.130 20.55 0.00 0.00 2.57
5308 8661 4.497473 AACTCGGCGATTTTTCATTCAA 57.503 36.364 11.27 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 4.437390 GGATGCATCAAACTGGTTTCGTAG 60.437 45.833 27.25 0.00 0.00 3.51
75 77 2.228822 GGATGCATCAAACTGGTTTCGT 59.771 45.455 27.25 0.00 0.00 3.85
80 82 1.541147 CGTTGGATGCATCAAACTGGT 59.459 47.619 33.66 0.00 38.34 4.00
84 86 0.887933 ACCCGTTGGATGCATCAAAC 59.112 50.000 29.79 29.79 37.37 2.93
85 87 1.626686 AACCCGTTGGATGCATCAAA 58.373 45.000 27.25 20.46 34.81 2.69
96 98 3.066203 ACAAGTTCTAAGCAAACCCGTTG 59.934 43.478 0.00 0.00 40.50 4.10
111 113 7.483691 CCACAAAGTGTTACAAGTTACAAGTTC 59.516 37.037 0.00 0.00 0.00 3.01
115 117 6.349445 CCACCACAAAGTGTTACAAGTTACAA 60.349 38.462 0.00 0.00 35.93 2.41
117 119 5.354792 TCCACCACAAAGTGTTACAAGTTAC 59.645 40.000 0.00 0.00 35.93 2.50
173 175 8.511604 AGAGGACAAATAAACCAGAACATATG 57.488 34.615 0.00 0.00 0.00 1.78
176 178 8.164070 ACTAAGAGGACAAATAAACCAGAACAT 58.836 33.333 0.00 0.00 0.00 2.71
191 193 6.953101 TGTGGCATAAAATACTAAGAGGACA 58.047 36.000 0.00 0.00 0.00 4.02
208 210 5.623956 AATCCATGATCAAAATGTGGCAT 57.376 34.783 0.00 0.00 0.00 4.40
268 271 9.061610 CCGTATTTGAACATAGTTTTCAATGAC 57.938 33.333 0.00 0.68 41.45 3.06
270 273 9.787532 ATCCGTATTTGAACATAGTTTTCAATG 57.212 29.630 0.00 0.00 41.45 2.82
275 278 7.931578 TGGATCCGTATTTGAACATAGTTTT 57.068 32.000 7.39 0.00 0.00 2.43
278 281 5.522460 CGTTGGATCCGTATTTGAACATAGT 59.478 40.000 7.39 0.00 0.00 2.12
356 359 6.097554 TGGTCCTTTGTATTGTGTGTCAAAAT 59.902 34.615 0.00 0.00 39.62 1.82
362 365 6.719370 ACATATTGGTCCTTTGTATTGTGTGT 59.281 34.615 0.00 0.00 0.00 3.72
365 368 7.389803 TGACATATTGGTCCTTTGTATTGTG 57.610 36.000 0.00 0.00 36.97 3.33
368 371 6.828785 GTCCTGACATATTGGTCCTTTGTATT 59.171 38.462 0.00 0.00 36.97 1.89
385 388 6.123045 TCATATACTATCTCCGTCCTGACA 57.877 41.667 0.00 0.00 0.00 3.58
386 389 7.042590 CGTATCATATACTATCTCCGTCCTGAC 60.043 44.444 0.00 0.00 0.00 3.51
416 419 2.826979 TCTCTCGAATACGTGCACTC 57.173 50.000 16.19 4.42 40.69 3.51
443 2183 0.179166 CCGTTCCATGCCGTTTGATG 60.179 55.000 0.00 0.00 0.00 3.07
448 2188 3.361977 GCACCGTTCCATGCCGTT 61.362 61.111 0.00 0.00 35.73 4.44
499 2239 1.732917 CAGGCTCTCTGCTAGACCG 59.267 63.158 0.00 0.00 42.39 4.79
583 2389 0.997196 GACGGCGAGCGAATTAAGTT 59.003 50.000 16.62 0.00 0.00 2.66
587 2393 2.278336 CGGACGGCGAGCGAATTA 60.278 61.111 16.62 0.00 0.00 1.40
616 2427 2.529632 GTTGCTGAAGGGAAGGGAAAT 58.470 47.619 0.00 0.00 0.00 2.17
996 3928 1.258445 CCAGCAACTCCTAGACGGGT 61.258 60.000 0.00 0.00 0.00 5.28
1799 4767 4.495939 CGTCGTCCTCGTCGTCGG 62.496 72.222 1.55 0.00 41.73 4.79
1879 4847 0.107456 CCGGTCCATTCCAGGATGAG 59.893 60.000 0.00 0.00 40.42 2.90
1959 4927 2.364448 GGGAGCCCCGAGAACTCT 60.364 66.667 0.00 0.00 32.13 3.24
1977 4945 1.599576 GACCTCCCACTTCCAGAGC 59.400 63.158 0.00 0.00 0.00 4.09
2712 5791 2.639065 GATCCAGGTTTGGCGACATTA 58.361 47.619 0.00 0.00 44.63 1.90
2743 5822 0.958876 CACCAAAGTTCGGGGCTACC 60.959 60.000 0.00 0.00 0.00 3.18
2744 5823 0.250597 ACACCAAAGTTCGGGGCTAC 60.251 55.000 0.00 0.00 0.00 3.58
2745 5824 0.475044 AACACCAAAGTTCGGGGCTA 59.525 50.000 0.00 0.00 0.00 3.93
2746 5825 1.106944 CAACACCAAAGTTCGGGGCT 61.107 55.000 0.00 0.00 0.00 5.19
2787 5866 4.806330 TCGTTCACCATCAAGAACTAGAC 58.194 43.478 0.00 0.00 41.40 2.59
2792 5871 5.580691 TGTATCATCGTTCACCATCAAGAAC 59.419 40.000 0.00 0.00 40.45 3.01
2826 5917 3.684788 ACCGCATCAAATCTGACAAGTAC 59.315 43.478 0.00 0.00 33.30 2.73
2835 5926 2.947652 CCTCATGAACCGCATCAAATCT 59.052 45.455 0.00 0.00 34.15 2.40
2839 5930 0.617935 TCCCTCATGAACCGCATCAA 59.382 50.000 0.00 0.00 34.15 2.57
2952 6043 1.803289 CCATGTCGAGACGAGAGCA 59.197 57.895 0.00 0.00 36.23 4.26
2958 6049 2.507110 AAGGTGGCCATGTCGAGACG 62.507 60.000 9.72 0.00 0.00 4.18
2959 6050 1.021390 CAAGGTGGCCATGTCGAGAC 61.021 60.000 9.72 0.00 0.00 3.36
2960 6051 1.296392 CAAGGTGGCCATGTCGAGA 59.704 57.895 9.72 0.00 0.00 4.04
2961 6052 2.401766 GCAAGGTGGCCATGTCGAG 61.402 63.158 9.72 0.00 0.00 4.04
2962 6053 2.359850 GCAAGGTGGCCATGTCGA 60.360 61.111 9.72 0.00 0.00 4.20
2963 6054 1.597797 ATTGCAAGGTGGCCATGTCG 61.598 55.000 9.72 0.00 0.00 4.35
2964 6055 0.174162 GATTGCAAGGTGGCCATGTC 59.826 55.000 9.72 1.52 0.00 3.06
2965 6056 0.251922 AGATTGCAAGGTGGCCATGT 60.252 50.000 9.72 0.00 0.00 3.21
2966 6057 0.458669 GAGATTGCAAGGTGGCCATG 59.541 55.000 9.72 4.12 0.00 3.66
2967 6058 0.040058 TGAGATTGCAAGGTGGCCAT 59.960 50.000 9.72 0.00 0.00 4.40
2968 6059 0.609957 CTGAGATTGCAAGGTGGCCA 60.610 55.000 0.00 0.00 0.00 5.36
2969 6060 0.610232 ACTGAGATTGCAAGGTGGCC 60.610 55.000 4.94 0.00 0.00 5.36
2970 6061 2.012673 CTACTGAGATTGCAAGGTGGC 58.987 52.381 4.94 0.00 0.00 5.01
2971 6062 3.616956 TCTACTGAGATTGCAAGGTGG 57.383 47.619 4.94 1.35 0.00 4.61
2972 6063 5.021033 AGATCTACTGAGATTGCAAGGTG 57.979 43.478 4.94 0.00 42.80 4.00
2973 6064 4.100808 GGAGATCTACTGAGATTGCAAGGT 59.899 45.833 4.94 0.00 42.80 3.50
2974 6065 4.100653 TGGAGATCTACTGAGATTGCAAGG 59.899 45.833 6.49 0.00 42.80 3.61
2975 6066 5.273674 TGGAGATCTACTGAGATTGCAAG 57.726 43.478 6.49 0.00 42.80 4.01
2976 6067 4.442612 GCTGGAGATCTACTGAGATTGCAA 60.443 45.833 15.64 0.00 42.80 4.08
2977 6068 3.069300 GCTGGAGATCTACTGAGATTGCA 59.931 47.826 15.64 0.00 42.80 4.08
2978 6069 3.069300 TGCTGGAGATCTACTGAGATTGC 59.931 47.826 15.64 4.85 42.80 3.56
2979 6070 4.933505 TGCTGGAGATCTACTGAGATTG 57.066 45.455 15.64 0.00 42.80 2.67
2980 6071 5.011943 GGATTGCTGGAGATCTACTGAGATT 59.988 44.000 15.64 0.00 42.80 2.40
2981 6072 4.527816 GGATTGCTGGAGATCTACTGAGAT 59.472 45.833 15.64 7.83 45.59 2.75
2982 6073 3.894427 GGATTGCTGGAGATCTACTGAGA 59.106 47.826 15.64 3.38 35.71 3.27
2983 6074 3.305267 CGGATTGCTGGAGATCTACTGAG 60.305 52.174 15.64 1.94 0.00 3.35
2984 6075 2.625314 CGGATTGCTGGAGATCTACTGA 59.375 50.000 15.64 0.00 0.00 3.41
2985 6076 2.363680 ACGGATTGCTGGAGATCTACTG 59.636 50.000 6.49 7.01 0.00 2.74
2986 6077 2.672098 ACGGATTGCTGGAGATCTACT 58.328 47.619 6.49 0.00 0.00 2.57
2987 6078 3.460857 AACGGATTGCTGGAGATCTAC 57.539 47.619 0.00 0.00 0.00 2.59
2988 6079 3.321111 GGTAACGGATTGCTGGAGATCTA 59.679 47.826 0.00 0.00 0.00 1.98
2989 6080 2.103263 GGTAACGGATTGCTGGAGATCT 59.897 50.000 0.00 0.00 0.00 2.75
2990 6081 2.158957 TGGTAACGGATTGCTGGAGATC 60.159 50.000 0.00 0.00 42.51 2.75
2991 6082 1.837439 TGGTAACGGATTGCTGGAGAT 59.163 47.619 0.00 0.00 42.51 2.75
2992 6083 1.271856 TGGTAACGGATTGCTGGAGA 58.728 50.000 0.00 0.00 42.51 3.71
2993 6084 1.737793 GTTGGTAACGGATTGCTGGAG 59.262 52.381 0.00 0.00 42.51 3.86
2994 6085 1.072489 TGTTGGTAACGGATTGCTGGA 59.928 47.619 0.00 0.00 42.51 3.86
2995 6086 1.529226 TGTTGGTAACGGATTGCTGG 58.471 50.000 0.00 0.00 42.51 4.85
2996 6087 3.242284 CGTATGTTGGTAACGGATTGCTG 60.242 47.826 0.00 0.00 42.51 4.41
2997 6088 2.933906 CGTATGTTGGTAACGGATTGCT 59.066 45.455 0.00 0.00 42.51 3.91
2998 6089 2.674357 ACGTATGTTGGTAACGGATTGC 59.326 45.455 0.00 0.00 40.81 3.56
3001 6092 3.255725 CACACGTATGTTGGTAACGGAT 58.744 45.455 0.00 0.00 40.81 4.18
3034 6128 3.414700 CGTTCACCTGCAGTCGGC 61.415 66.667 13.81 0.00 45.13 5.54
3035 6129 3.414700 GCGTTCACCTGCAGTCGG 61.415 66.667 13.81 0.01 0.00 4.79
3036 6130 3.767230 CGCGTTCACCTGCAGTCG 61.767 66.667 13.81 10.02 0.00 4.18
3037 6131 2.159272 GAACGCGTTCACCTGCAGTC 62.159 60.000 39.21 15.13 39.31 3.51
3038 6132 2.203015 AACGCGTTCACCTGCAGT 60.203 55.556 20.79 0.00 0.00 4.40
3039 6133 2.162921 CTGAACGCGTTCACCTGCAG 62.163 60.000 42.01 29.67 43.90 4.41
3086 6185 2.654912 CGCCGTCTTGGTGTCGTTC 61.655 63.158 0.00 0.00 43.63 3.95
3357 6460 4.802999 AGAAAAATCAGTAAAGCAGCAGC 58.197 39.130 0.00 0.00 42.56 5.25
3393 6497 2.447959 AGAGGCCGGGGGATAACC 60.448 66.667 2.18 0.00 39.11 2.85
3394 6498 2.829592 CAGAGGCCGGGGGATAAC 59.170 66.667 2.18 0.00 0.00 1.89
3395 6499 3.168528 GCAGAGGCCGGGGGATAA 61.169 66.667 2.18 0.00 0.00 1.75
3396 6500 3.792325 ATGCAGAGGCCGGGGGATA 62.792 63.158 2.18 0.00 40.13 2.59
3400 6504 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3401 6505 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
3402 6506 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
3403 6507 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
3404 6508 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
3405 6509 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
3413 6517 2.100749 TGACCGTATGCATCGTTCTGAT 59.899 45.455 0.19 0.00 38.01 2.90
3414 6518 1.474879 TGACCGTATGCATCGTTCTGA 59.525 47.619 0.19 0.00 0.00 3.27
3415 6519 1.921243 TGACCGTATGCATCGTTCTG 58.079 50.000 0.19 0.00 0.00 3.02
3416 6520 2.890808 ATGACCGTATGCATCGTTCT 57.109 45.000 0.19 0.00 0.00 3.01
3417 6521 3.181774 GTGTATGACCGTATGCATCGTTC 59.818 47.826 0.19 5.82 0.00 3.95
3418 6522 3.120792 GTGTATGACCGTATGCATCGTT 58.879 45.455 0.19 0.00 0.00 3.85
3419 6523 2.361119 AGTGTATGACCGTATGCATCGT 59.639 45.455 0.19 0.00 0.00 3.73
3420 6524 3.013276 AGTGTATGACCGTATGCATCG 57.987 47.619 0.19 7.03 0.00 3.84
3421 6525 5.983720 AGTAAAGTGTATGACCGTATGCATC 59.016 40.000 0.19 0.00 0.00 3.91
3422 6526 5.753438 CAGTAAAGTGTATGACCGTATGCAT 59.247 40.000 3.79 3.79 0.00 3.96
3423 6527 5.105675 TCAGTAAAGTGTATGACCGTATGCA 60.106 40.000 0.00 0.00 0.00 3.96
3424 6528 5.345702 TCAGTAAAGTGTATGACCGTATGC 58.654 41.667 0.00 0.00 0.00 3.14
3425 6529 8.328146 CAATTCAGTAAAGTGTATGACCGTATG 58.672 37.037 0.00 0.00 0.00 2.39
3426 6530 8.255206 TCAATTCAGTAAAGTGTATGACCGTAT 58.745 33.333 0.00 0.00 34.59 3.06
3427 6531 7.543172 GTCAATTCAGTAAAGTGTATGACCGTA 59.457 37.037 0.00 0.00 34.59 4.02
3428 6532 6.367969 GTCAATTCAGTAAAGTGTATGACCGT 59.632 38.462 0.00 0.00 34.59 4.83
3429 6533 6.367695 TGTCAATTCAGTAAAGTGTATGACCG 59.632 38.462 0.00 0.00 34.59 4.79
3430 6534 7.667043 TGTCAATTCAGTAAAGTGTATGACC 57.333 36.000 0.00 0.00 34.59 4.02
3431 6535 9.382244 GTTTGTCAATTCAGTAAAGTGTATGAC 57.618 33.333 0.00 0.00 34.59 3.06
3432 6536 8.279800 CGTTTGTCAATTCAGTAAAGTGTATGA 58.720 33.333 0.00 0.00 34.59 2.15
3433 6537 8.279800 TCGTTTGTCAATTCAGTAAAGTGTATG 58.720 33.333 0.00 0.00 34.59 2.39
3434 6538 8.373048 TCGTTTGTCAATTCAGTAAAGTGTAT 57.627 30.769 0.00 0.00 34.59 2.29
3435 6539 7.707464 TCTCGTTTGTCAATTCAGTAAAGTGTA 59.293 33.333 0.00 0.00 34.59 2.90
3436 6540 6.537301 TCTCGTTTGTCAATTCAGTAAAGTGT 59.463 34.615 0.00 0.00 34.59 3.55
3437 6541 6.943981 TCTCGTTTGTCAATTCAGTAAAGTG 58.056 36.000 0.00 0.00 34.27 3.16
3438 6542 7.730364 ATCTCGTTTGTCAATTCAGTAAAGT 57.270 32.000 0.00 0.00 0.00 2.66
3439 6543 8.499162 AGAATCTCGTTTGTCAATTCAGTAAAG 58.501 33.333 0.00 0.00 0.00 1.85
3440 6544 8.378172 AGAATCTCGTTTGTCAATTCAGTAAA 57.622 30.769 0.00 0.00 0.00 2.01
3441 6545 7.962964 AGAATCTCGTTTGTCAATTCAGTAA 57.037 32.000 0.00 0.00 0.00 2.24
3442 6546 7.655732 TGAAGAATCTCGTTTGTCAATTCAGTA 59.344 33.333 0.00 0.00 0.00 2.74
3443 6547 6.483307 TGAAGAATCTCGTTTGTCAATTCAGT 59.517 34.615 0.00 0.00 0.00 3.41
3444 6548 6.891624 TGAAGAATCTCGTTTGTCAATTCAG 58.108 36.000 0.00 0.00 0.00 3.02
3445 6549 6.073058 CCTGAAGAATCTCGTTTGTCAATTCA 60.073 38.462 0.00 0.00 0.00 2.57
3446 6550 6.147821 TCCTGAAGAATCTCGTTTGTCAATTC 59.852 38.462 0.00 0.00 0.00 2.17
3447 6551 5.997746 TCCTGAAGAATCTCGTTTGTCAATT 59.002 36.000 0.00 0.00 0.00 2.32
3448 6552 5.551233 TCCTGAAGAATCTCGTTTGTCAAT 58.449 37.500 0.00 0.00 0.00 2.57
3449 6553 4.956085 TCCTGAAGAATCTCGTTTGTCAA 58.044 39.130 0.00 0.00 0.00 3.18
3450 6554 4.600692 TCCTGAAGAATCTCGTTTGTCA 57.399 40.909 0.00 0.00 0.00 3.58
3455 6559 4.942852 CAGCTATCCTGAAGAATCTCGTT 58.057 43.478 0.00 0.00 44.64 3.85
3474 6578 1.524355 CATTCATCCACGTCGATCAGC 59.476 52.381 0.00 0.00 0.00 4.26
3603 6707 4.164796 TCAGGACTCCGGTAGTAGTTCATA 59.835 45.833 0.00 0.00 39.07 2.15
3793 6901 7.320399 AGTTAAAGGGAAACTCAACAAAGTTG 58.680 34.615 3.58 3.58 39.40 3.16
3815 6923 9.665264 GAGATAACTGAAATTCGAAACAAAGTT 57.335 29.630 17.91 17.91 0.00 2.66
4144 7252 8.740123 TTAAGTTCACAACCTCACTAATCAAA 57.260 30.769 0.00 0.00 0.00 2.69
4147 7255 8.779354 ATCTTAAGTTCACAACCTCACTAATC 57.221 34.615 1.63 0.00 0.00 1.75
4151 7259 7.054124 TGAAATCTTAAGTTCACAACCTCACT 58.946 34.615 1.63 0.00 34.75 3.41
4163 7271 7.554476 GGACCTAGCAATCTGAAATCTTAAGTT 59.446 37.037 1.63 0.00 0.00 2.66
4167 7275 6.613271 AGAGGACCTAGCAATCTGAAATCTTA 59.387 38.462 0.00 0.00 0.00 2.10
4215 7323 8.015658 AGCAAGTTGTCGATCAAAATACTTTAC 58.984 33.333 4.48 0.00 37.81 2.01
4263 7371 3.195610 CCTACCTCATGTGCTGTTACTCA 59.804 47.826 0.00 0.00 0.00 3.41
4306 7414 3.171388 CCTCCCCTTCCCCCATCG 61.171 72.222 0.00 0.00 0.00 3.84
4319 7427 0.106967 GTCATCTTGCCTTCCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
4320 7428 0.106967 GGTCATCTTGCCTTCCCCTC 60.107 60.000 0.00 0.00 0.00 4.30
4323 7431 1.753073 CAATGGTCATCTTGCCTTCCC 59.247 52.381 0.00 0.00 0.00 3.97
4341 7449 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4342 7450 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4343 7451 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4344 7452 5.220662 CCAACAACAACAACAACAACAACAA 60.221 36.000 0.00 0.00 0.00 2.83
4345 7453 4.271049 CCAACAACAACAACAACAACAACA 59.729 37.500 0.00 0.00 0.00 3.33
4346 7454 4.508124 TCCAACAACAACAACAACAACAAC 59.492 37.500 0.00 0.00 0.00 3.32
4347 7455 4.693283 TCCAACAACAACAACAACAACAA 58.307 34.783 0.00 0.00 0.00 2.83
4348 7456 4.202161 ACTCCAACAACAACAACAACAACA 60.202 37.500 0.00 0.00 0.00 3.33
4349 7457 4.303282 ACTCCAACAACAACAACAACAAC 58.697 39.130 0.00 0.00 0.00 3.32
4350 7458 4.592485 ACTCCAACAACAACAACAACAA 57.408 36.364 0.00 0.00 0.00 2.83
4351 7459 4.592485 AACTCCAACAACAACAACAACA 57.408 36.364 0.00 0.00 0.00 3.33
4352 7460 6.088883 CACTTAACTCCAACAACAACAACAAC 59.911 38.462 0.00 0.00 0.00 3.32
4387 7495 1.123077 GGAATGGCCTTTTCATCCCC 58.877 55.000 17.30 5.35 0.00 4.81
4401 7751 6.013554 TCCCCTAAAGACTAAATGGGAATG 57.986 41.667 0.00 0.00 37.62 2.67
4404 7754 6.668133 AAATCCCCTAAAGACTAAATGGGA 57.332 37.500 0.00 0.00 44.25 4.37
4489 7839 7.765307 TCATACGAACTAGAGGTTACGAAAAT 58.235 34.615 0.00 0.00 38.41 1.82
4568 7918 2.342650 ATGCCAATGGGACGTGCAC 61.343 57.895 9.96 6.82 34.33 4.57
4575 7925 2.829914 GCGAGCATGCCAATGGGA 60.830 61.111 15.66 0.00 35.59 4.37
4638 7988 1.876497 GCCAACACGTACGGGTAGGA 61.876 60.000 25.68 0.00 0.00 2.94
4684 8034 3.589951 ATTCATGGATCCAACCCTCTG 57.410 47.619 20.67 11.59 0.00 3.35
4804 8155 7.169158 AGACAACACATTCCTTTTTGAAGAA 57.831 32.000 0.00 0.00 0.00 2.52
4805 8156 6.773976 AGACAACACATTCCTTTTTGAAGA 57.226 33.333 0.00 0.00 0.00 2.87
4894 8245 7.147949 GCAAGTTGAGTTATACTACTACCTCCA 60.148 40.741 7.16 0.00 0.00 3.86
5045 8397 1.391577 TAATCGCGGTGCTACCACTA 58.608 50.000 6.13 0.00 41.75 2.74
5078 8431 1.384643 CCTAAGCTAGGGGCCCACT 60.385 63.158 27.72 20.55 42.42 4.00
5091 8444 2.571653 TCACCCCATGACAAGACCTAAG 59.428 50.000 0.00 0.00 29.99 2.18
5101 8454 4.489771 CCCGCCTCACCCCATGAC 62.490 72.222 0.00 0.00 32.37 3.06
5138 8491 0.030908 CCGAACGGCTGGAGATACTC 59.969 60.000 0.00 0.00 0.00 2.59
5139 8492 2.116383 CCGAACGGCTGGAGATACT 58.884 57.895 0.00 0.00 0.00 2.12
5140 8493 4.732106 CCGAACGGCTGGAGATAC 57.268 61.111 0.00 0.00 0.00 2.24
5159 8512 0.953960 CTTTTTCGACGTCCTGGGGG 60.954 60.000 10.58 0.00 0.00 5.40
5160 8513 0.250166 ACTTTTTCGACGTCCTGGGG 60.250 55.000 10.58 0.00 0.00 4.96
5161 8514 0.865769 CACTTTTTCGACGTCCTGGG 59.134 55.000 10.58 0.00 0.00 4.45
5162 8515 0.234884 GCACTTTTTCGACGTCCTGG 59.765 55.000 10.58 0.00 0.00 4.45
5163 8516 0.234884 GGCACTTTTTCGACGTCCTG 59.765 55.000 10.58 0.00 0.00 3.86
5164 8517 1.219522 CGGCACTTTTTCGACGTCCT 61.220 55.000 10.58 0.00 0.00 3.85
5165 8518 1.203313 CGGCACTTTTTCGACGTCC 59.797 57.895 10.58 0.00 0.00 4.79
5166 8519 0.302589 AACGGCACTTTTTCGACGTC 59.697 50.000 5.18 5.18 32.98 4.34
5167 8520 0.728542 AAACGGCACTTTTTCGACGT 59.271 45.000 0.00 0.00 35.95 4.34
5168 8521 1.109296 CAAACGGCACTTTTTCGACG 58.891 50.000 0.00 0.00 0.00 5.12
5169 8522 1.472990 CCAAACGGCACTTTTTCGAC 58.527 50.000 0.00 0.00 0.00 4.20
5170 8523 0.382515 CCCAAACGGCACTTTTTCGA 59.617 50.000 0.00 0.00 0.00 3.71
5171 8524 0.596341 CCCCAAACGGCACTTTTTCG 60.596 55.000 0.00 0.00 0.00 3.46
5172 8525 3.282557 CCCCAAACGGCACTTTTTC 57.717 52.632 0.00 0.00 0.00 2.29
5192 8545 1.418755 GAAAGTAAGCGCCGGTTCG 59.581 57.895 4.18 0.00 0.00 3.95
5193 8546 1.418755 CGAAAGTAAGCGCCGGTTC 59.581 57.895 4.18 0.00 0.00 3.62
5194 8547 2.030958 CCGAAAGTAAGCGCCGGTT 61.031 57.895 6.80 6.80 35.83 4.44
5195 8548 2.433664 CCGAAAGTAAGCGCCGGT 60.434 61.111 2.29 0.00 35.83 5.28
5196 8549 3.861263 GCCGAAAGTAAGCGCCGG 61.861 66.667 13.63 13.63 42.74 6.13
5197 8550 4.204891 CGCCGAAAGTAAGCGCCG 62.205 66.667 2.29 0.00 43.72 6.46
5201 8554 2.396157 CCCCACGCCGAAAGTAAGC 61.396 63.158 0.00 0.00 0.00 3.09
5202 8555 1.743995 CCCCCACGCCGAAAGTAAG 60.744 63.158 0.00 0.00 0.00 2.34
5203 8556 2.348243 CCCCCACGCCGAAAGTAA 59.652 61.111 0.00 0.00 0.00 2.24
5204 8557 4.397832 GCCCCCACGCCGAAAGTA 62.398 66.667 0.00 0.00 0.00 2.24
5207 8560 4.669809 ATTGCCCCCACGCCGAAA 62.670 61.111 0.00 0.00 0.00 3.46
5208 8561 4.669809 AATTGCCCCCACGCCGAA 62.670 61.111 0.00 0.00 0.00 4.30
5213 8566 3.625082 GAACGCAATTGCCCCCACG 62.625 63.158 24.24 11.64 37.91 4.94
5214 8567 2.261361 GAACGCAATTGCCCCCAC 59.739 61.111 24.24 8.19 37.91 4.61
5215 8568 2.143575 TAGGAACGCAATTGCCCCCA 62.144 55.000 24.24 9.65 37.91 4.96
5216 8569 1.379309 TAGGAACGCAATTGCCCCC 60.379 57.895 24.24 20.47 37.91 5.40
5217 8570 0.679960 ACTAGGAACGCAATTGCCCC 60.680 55.000 24.24 20.80 37.91 5.80
5218 8571 1.135402 CAACTAGGAACGCAATTGCCC 60.135 52.381 24.24 18.91 37.91 5.36
5219 8572 1.539827 ACAACTAGGAACGCAATTGCC 59.460 47.619 24.24 10.56 37.91 4.52
5220 8573 2.724839 CGACAACTAGGAACGCAATTGC 60.725 50.000 20.76 20.76 37.78 3.56
5221 8574 2.724839 GCGACAACTAGGAACGCAATTG 60.725 50.000 16.40 0.00 46.75 2.32
5222 8575 1.463444 GCGACAACTAGGAACGCAATT 59.537 47.619 16.40 0.00 46.75 2.32
5223 8576 1.076332 GCGACAACTAGGAACGCAAT 58.924 50.000 16.40 0.00 46.75 3.56
5224 8577 2.524300 GCGACAACTAGGAACGCAA 58.476 52.632 16.40 0.00 46.75 4.85
5225 8578 4.255126 GCGACAACTAGGAACGCA 57.745 55.556 16.40 0.00 46.75 5.24
5226 8579 2.098831 GGGCGACAACTAGGAACGC 61.099 63.158 14.14 14.14 46.79 4.84
5227 8580 1.447314 GGGGCGACAACTAGGAACG 60.447 63.158 0.00 0.00 0.00 3.95
5228 8581 0.035739 TTGGGGCGACAACTAGGAAC 59.964 55.000 0.00 0.00 0.00 3.62
5229 8582 0.035739 GTTGGGGCGACAACTAGGAA 59.964 55.000 14.13 0.00 45.49 3.36
5230 8583 1.675219 GTTGGGGCGACAACTAGGA 59.325 57.895 14.13 0.00 45.49 2.94
5231 8584 4.296265 GTTGGGGCGACAACTAGG 57.704 61.111 14.13 0.00 45.49 3.02
5243 8596 2.966309 GAGTTTGCGCCGAGTTGGG 61.966 63.158 4.18 0.00 38.63 4.12
5244 8597 2.556287 GAGTTTGCGCCGAGTTGG 59.444 61.111 4.18 0.00 42.50 3.77
5245 8598 2.170985 CGAGTTTGCGCCGAGTTG 59.829 61.111 4.18 0.00 0.00 3.16
5246 8599 3.041940 CCGAGTTTGCGCCGAGTT 61.042 61.111 4.18 0.00 0.00 3.01
5254 8607 2.262572 AATCAAATCGCCGAGTTTGC 57.737 45.000 0.00 0.00 35.76 3.68
5255 8608 4.857871 TCTAATCAAATCGCCGAGTTTG 57.142 40.909 0.00 6.39 36.82 2.93
5256 8609 6.436843 AATTCTAATCAAATCGCCGAGTTT 57.563 33.333 0.00 0.00 0.00 2.66
5257 8610 5.276868 CGAATTCTAATCAAATCGCCGAGTT 60.277 40.000 3.52 0.00 0.00 3.01
5258 8611 4.209288 CGAATTCTAATCAAATCGCCGAGT 59.791 41.667 3.52 0.00 0.00 4.18
5259 8612 4.376413 CCGAATTCTAATCAAATCGCCGAG 60.376 45.833 3.52 0.00 0.00 4.63
5260 8613 3.493129 CCGAATTCTAATCAAATCGCCGA 59.507 43.478 3.52 0.00 0.00 5.54
5261 8614 3.799035 CCGAATTCTAATCAAATCGCCG 58.201 45.455 3.52 0.00 0.00 6.46
5262 8615 3.003275 TGCCGAATTCTAATCAAATCGCC 59.997 43.478 3.52 0.00 0.00 5.54
5263 8616 3.968724 GTGCCGAATTCTAATCAAATCGC 59.031 43.478 3.52 0.00 0.00 4.58
5264 8617 5.155509 TGTGCCGAATTCTAATCAAATCG 57.844 39.130 3.52 0.00 0.00 3.34
5265 8618 7.029563 AGTTTGTGCCGAATTCTAATCAAATC 58.970 34.615 3.52 5.98 0.00 2.17
5266 8619 6.924111 AGTTTGTGCCGAATTCTAATCAAAT 58.076 32.000 3.52 0.38 0.00 2.32
5267 8620 6.325919 AGTTTGTGCCGAATTCTAATCAAA 57.674 33.333 3.52 7.54 0.00 2.69
5268 8621 5.390461 CGAGTTTGTGCCGAATTCTAATCAA 60.390 40.000 3.52 2.02 0.00 2.57
5269 8622 4.092821 CGAGTTTGTGCCGAATTCTAATCA 59.907 41.667 3.52 0.00 0.00 2.57
5270 8623 4.494199 CCGAGTTTGTGCCGAATTCTAATC 60.494 45.833 3.52 0.00 0.00 1.75
5271 8624 3.374058 CCGAGTTTGTGCCGAATTCTAAT 59.626 43.478 3.52 0.00 0.00 1.73
5272 8625 2.739913 CCGAGTTTGTGCCGAATTCTAA 59.260 45.455 3.52 0.00 0.00 2.10
5273 8626 2.343101 CCGAGTTTGTGCCGAATTCTA 58.657 47.619 3.52 0.00 0.00 2.10
5274 8627 1.156736 CCGAGTTTGTGCCGAATTCT 58.843 50.000 3.52 0.00 0.00 2.40
5275 8628 0.454452 GCCGAGTTTGTGCCGAATTC 60.454 55.000 0.00 0.00 0.00 2.17
5276 8629 1.579429 GCCGAGTTTGTGCCGAATT 59.421 52.632 0.00 0.00 0.00 2.17
5277 8630 2.677003 CGCCGAGTTTGTGCCGAAT 61.677 57.895 0.00 0.00 0.00 3.34
5278 8631 3.342627 CGCCGAGTTTGTGCCGAA 61.343 61.111 0.00 0.00 0.00 4.30
5279 8632 3.583276 ATCGCCGAGTTTGTGCCGA 62.583 57.895 0.00 0.00 0.00 5.54
5280 8633 2.182614 AAATCGCCGAGTTTGTGCCG 62.183 55.000 0.00 0.00 0.00 5.69
5281 8634 0.039527 AAAATCGCCGAGTTTGTGCC 60.040 50.000 12.07 0.00 28.65 5.01
5282 8635 1.713932 GAAAAATCGCCGAGTTTGTGC 59.286 47.619 13.60 3.01 30.27 4.57
5283 8636 2.993545 TGAAAAATCGCCGAGTTTGTG 58.006 42.857 13.60 0.00 30.27 3.33
5284 8637 3.915437 ATGAAAAATCGCCGAGTTTGT 57.085 38.095 13.60 4.09 30.27 2.83
5285 8638 4.225984 TGAATGAAAAATCGCCGAGTTTG 58.774 39.130 13.60 0.00 30.27 2.93
5286 8639 4.497473 TGAATGAAAAATCGCCGAGTTT 57.503 36.364 6.72 6.72 31.06 2.66
5287 8640 4.497473 TTGAATGAAAAATCGCCGAGTT 57.503 36.364 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.