Multiple sequence alignment - TraesCS2D01G403600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G403600 chr2D 100.000 6002 0 0 1 6002 518264430 518270431 0.000000e+00 11084.0
1 TraesCS2D01G403600 chr2D 73.990 842 128 49 3690 4469 621083747 621082935 2.150000e-64 257.0
2 TraesCS2D01G403600 chr2A 92.280 5298 267 73 615 5792 662338199 662343474 0.000000e+00 7387.0
3 TraesCS2D01G403600 chr2A 96.364 165 5 1 5838 6002 662343479 662343642 2.760000e-68 270.0
4 TraesCS2D01G403600 chr2B 93.150 4394 177 51 592 4911 610415539 610419882 0.000000e+00 6333.0
5 TraesCS2D01G403600 chr2B 91.880 1096 63 13 4931 6002 610419937 610421030 0.000000e+00 1507.0
6 TraesCS2D01G403600 chr2B 89.457 313 29 3 266 576 610415249 610415559 5.640000e-105 392.0
7 TraesCS2D01G403600 chr2B 91.304 46 3 1 370 414 779848238 779848283 1.810000e-05 62.1
8 TraesCS2D01G403600 chr7B 83.162 4086 483 119 1115 5085 740036638 740032643 0.000000e+00 3544.0
9 TraesCS2D01G403600 chr7B 88.626 211 24 0 3670 3880 739990323 739990113 2.150000e-64 257.0
10 TraesCS2D01G403600 chr7A 81.666 4189 523 139 1115 5173 730429539 730425466 0.000000e+00 3254.0
11 TraesCS2D01G403600 chr7A 84.061 1236 119 44 2739 3936 730301553 730300358 0.000000e+00 1120.0
12 TraesCS2D01G403600 chr7A 82.687 670 78 27 2739 3405 730349527 730348893 1.460000e-155 560.0
13 TraesCS2D01G403600 chr7A 86.134 476 52 8 4081 4542 730298664 730298189 8.980000e-138 501.0
14 TraesCS2D01G403600 chr7A 88.249 417 33 7 2323 2738 730302331 730301930 9.040000e-133 484.0
15 TraesCS2D01G403600 chr7A 84.867 489 62 7 1844 2322 730358417 730357931 3.250000e-132 483.0
16 TraesCS2D01G403600 chr7A 88.529 401 30 7 2339 2738 730350289 730349904 7.040000e-129 472.0
17 TraesCS2D01G403600 chr7A 84.458 489 62 8 1844 2322 730311164 730310680 2.530000e-128 470.0
18 TraesCS2D01G403600 chr7A 80.710 648 79 25 3169 3799 730290297 730289679 4.240000e-126 462.0
19 TraesCS2D01G403600 chr7D 85.308 2886 313 68 1093 3932 635585247 635588067 0.000000e+00 2878.0
20 TraesCS2D01G403600 chr7D 77.152 1243 184 68 3999 5170 635588066 635589279 1.100000e-176 630.0
21 TraesCS2D01G403600 chr4A 74.431 1932 364 87 2088 3946 741546003 741547877 0.000000e+00 712.0
22 TraesCS2D01G403600 chr4A 79.755 489 85 13 4066 4543 741548664 741549149 5.760000e-90 342.0
23 TraesCS2D01G403600 chr4A 92.857 42 3 0 378 419 27643612 27643571 1.810000e-05 62.1
24 TraesCS2D01G403600 chr6D 78.969 485 95 5 4066 4543 471920783 471921267 2.090000e-84 324.0
25 TraesCS2D01G403600 chr6D 95.000 40 2 0 380 419 389976876 389976915 5.020000e-06 63.9
26 TraesCS2D01G403600 chr6D 92.857 42 3 0 376 417 451854831 451854872 1.810000e-05 62.1
27 TraesCS2D01G403600 chr6B 84.646 254 39 0 4066 4319 716621219 716621472 2.780000e-63 254.0
28 TraesCS2D01G403600 chr6B 85.161 155 23 0 4389 4543 716621559 716621713 6.230000e-35 159.0
29 TraesCS2D01G403600 chrUn 84.889 225 34 0 2088 2312 74820427 74820203 1.680000e-55 228.0
30 TraesCS2D01G403600 chrUn 85.161 155 23 0 4389 4543 74818124 74817970 6.230000e-35 159.0
31 TraesCS2D01G403600 chr4D 85.859 99 14 0 3120 3218 295023950 295024048 8.230000e-19 106.0
32 TraesCS2D01G403600 chr5D 91.304 46 4 0 377 422 282357447 282357402 5.020000e-06 63.9
33 TraesCS2D01G403600 chr5B 91.304 46 4 0 377 422 320410398 320410353 5.020000e-06 63.9
34 TraesCS2D01G403600 chr5B 87.037 54 6 1 367 419 318995489 318995436 6.500000e-05 60.2
35 TraesCS2D01G403600 chr5A 91.304 46 4 0 377 422 374896718 374896673 5.020000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G403600 chr2D 518264430 518270431 6001 False 11084.000000 11084 100.000000 1 6002 1 chr2D.!!$F1 6001
1 TraesCS2D01G403600 chr2D 621082935 621083747 812 True 257.000000 257 73.990000 3690 4469 1 chr2D.!!$R1 779
2 TraesCS2D01G403600 chr2A 662338199 662343642 5443 False 3828.500000 7387 94.322000 615 6002 2 chr2A.!!$F1 5387
3 TraesCS2D01G403600 chr2B 610415249 610421030 5781 False 2744.000000 6333 91.495667 266 6002 3 chr2B.!!$F2 5736
4 TraesCS2D01G403600 chr7B 740032643 740036638 3995 True 3544.000000 3544 83.162000 1115 5085 1 chr7B.!!$R2 3970
5 TraesCS2D01G403600 chr7A 730425466 730429539 4073 True 3254.000000 3254 81.666000 1115 5173 1 chr7A.!!$R4 4058
6 TraesCS2D01G403600 chr7A 730298189 730302331 4142 True 701.666667 1120 86.148000 2323 4542 3 chr7A.!!$R5 2219
7 TraesCS2D01G403600 chr7A 730348893 730350289 1396 True 516.000000 560 85.608000 2339 3405 2 chr7A.!!$R6 1066
8 TraesCS2D01G403600 chr7A 730289679 730290297 618 True 462.000000 462 80.710000 3169 3799 1 chr7A.!!$R1 630
9 TraesCS2D01G403600 chr7D 635585247 635589279 4032 False 1754.000000 2878 81.230000 1093 5170 2 chr7D.!!$F1 4077
10 TraesCS2D01G403600 chr4A 741546003 741549149 3146 False 527.000000 712 77.093000 2088 4543 2 chr4A.!!$F1 2455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.107993 AGCATCACATGGACGACAGG 60.108 55.000 0.00 0.0 36.81 4.00 F
1283 1335 0.110486 ACCCAATTCACTTCTGCCGT 59.890 50.000 0.00 0.0 0.00 5.68 F
2230 2321 1.002069 TCAGCAGGGTTCCATCCATT 58.998 50.000 0.00 0.0 0.00 3.16 F
3697 4261 1.955080 GGACTAGTCGAGTGGTATGGG 59.045 57.143 16.56 0.0 39.06 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2007 0.238289 GCAGCGCTGTTTGAAGCTTA 59.762 50.000 35.80 0.0 41.24 3.09 R
2824 3317 1.066605 GCATCCTGAAATTGCATCGCT 59.933 47.619 0.00 0.0 36.40 4.93 R
3829 4408 0.984230 TCCAGCGGATCTGTCCTTTT 59.016 50.000 2.89 0.0 42.73 2.27 R
5694 8689 0.818040 GGCGGCGGGATAGAAAATGT 60.818 55.000 9.78 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.364277 GCTCTAGGAACGGCGAATT 57.636 52.632 16.62 0.00 0.00 2.17
19 20 0.931005 GCTCTAGGAACGGCGAATTG 59.069 55.000 16.62 0.00 0.00 2.32
20 21 1.739371 GCTCTAGGAACGGCGAATTGT 60.739 52.381 16.62 0.00 0.00 2.71
21 22 2.618053 CTCTAGGAACGGCGAATTGTT 58.382 47.619 16.62 0.00 0.00 2.83
22 23 3.000727 CTCTAGGAACGGCGAATTGTTT 58.999 45.455 16.62 0.00 0.00 2.83
23 24 3.404899 TCTAGGAACGGCGAATTGTTTT 58.595 40.909 16.62 0.00 0.00 2.43
24 25 3.816523 TCTAGGAACGGCGAATTGTTTTT 59.183 39.130 16.62 0.00 0.00 1.94
25 26 3.007979 AGGAACGGCGAATTGTTTTTC 57.992 42.857 16.62 3.71 0.00 2.29
26 27 2.621526 AGGAACGGCGAATTGTTTTTCT 59.378 40.909 16.62 0.00 0.00 2.52
27 28 2.977829 GGAACGGCGAATTGTTTTTCTC 59.022 45.455 16.62 0.00 0.00 2.87
28 29 3.549221 GGAACGGCGAATTGTTTTTCTCA 60.549 43.478 16.62 0.00 0.00 3.27
29 30 3.915437 ACGGCGAATTGTTTTTCTCAT 57.085 38.095 16.62 0.00 0.00 2.90
30 31 3.564511 ACGGCGAATTGTTTTTCTCATG 58.435 40.909 16.62 0.00 0.00 3.07
31 32 2.916716 CGGCGAATTGTTTTTCTCATGG 59.083 45.455 0.00 0.00 0.00 3.66
32 33 3.365868 CGGCGAATTGTTTTTCTCATGGA 60.366 43.478 0.00 0.00 0.00 3.41
33 34 4.168760 GGCGAATTGTTTTTCTCATGGAG 58.831 43.478 0.00 0.00 0.00 3.86
34 35 4.321230 GGCGAATTGTTTTTCTCATGGAGT 60.321 41.667 0.00 0.00 0.00 3.85
35 36 4.618489 GCGAATTGTTTTTCTCATGGAGTG 59.382 41.667 0.00 0.00 0.00 3.51
36 37 4.618489 CGAATTGTTTTTCTCATGGAGTGC 59.382 41.667 0.00 0.00 0.00 4.40
37 38 3.624326 TTGTTTTTCTCATGGAGTGCG 57.376 42.857 0.00 0.00 0.00 5.34
38 39 2.571212 TGTTTTTCTCATGGAGTGCGT 58.429 42.857 0.00 0.00 0.00 5.24
39 40 3.734463 TGTTTTTCTCATGGAGTGCGTA 58.266 40.909 0.00 0.00 0.00 4.42
40 41 4.130857 TGTTTTTCTCATGGAGTGCGTAA 58.869 39.130 0.00 0.00 0.00 3.18
41 42 4.024387 TGTTTTTCTCATGGAGTGCGTAAC 60.024 41.667 0.00 0.00 0.00 2.50
42 43 3.678056 TTTCTCATGGAGTGCGTAACT 57.322 42.857 0.00 0.00 43.85 2.24
43 44 3.678056 TTCTCATGGAGTGCGTAACTT 57.322 42.857 0.00 0.00 40.07 2.66
44 45 2.959516 TCTCATGGAGTGCGTAACTTG 58.040 47.619 0.00 0.00 40.07 3.16
45 46 2.560981 TCTCATGGAGTGCGTAACTTGA 59.439 45.455 0.00 0.00 40.07 3.02
46 47 3.195610 TCTCATGGAGTGCGTAACTTGAT 59.804 43.478 0.00 0.00 40.07 2.57
47 48 3.261580 TCATGGAGTGCGTAACTTGATG 58.738 45.455 0.00 1.80 40.07 3.07
48 49 2.831685 TGGAGTGCGTAACTTGATGT 57.168 45.000 0.00 0.00 40.07 3.06
49 50 2.683968 TGGAGTGCGTAACTTGATGTC 58.316 47.619 0.00 0.00 40.07 3.06
50 51 2.036604 TGGAGTGCGTAACTTGATGTCA 59.963 45.455 0.00 0.00 40.07 3.58
51 52 3.064207 GGAGTGCGTAACTTGATGTCAA 58.936 45.455 0.00 0.00 40.07 3.18
52 53 3.684788 GGAGTGCGTAACTTGATGTCAAT 59.315 43.478 0.00 0.00 40.07 2.57
53 54 4.154195 GGAGTGCGTAACTTGATGTCAATT 59.846 41.667 0.00 0.00 40.07 2.32
54 55 5.034554 AGTGCGTAACTTGATGTCAATTG 57.965 39.130 0.00 0.00 34.57 2.32
55 56 4.515191 AGTGCGTAACTTGATGTCAATTGT 59.485 37.500 5.13 0.00 34.57 2.71
56 57 5.699001 AGTGCGTAACTTGATGTCAATTGTA 59.301 36.000 5.13 0.00 34.57 2.41
57 58 6.203915 AGTGCGTAACTTGATGTCAATTGTAA 59.796 34.615 5.13 0.00 34.57 2.41
58 59 6.853872 GTGCGTAACTTGATGTCAATTGTAAA 59.146 34.615 5.13 0.00 35.02 2.01
59 60 7.377397 GTGCGTAACTTGATGTCAATTGTAAAA 59.623 33.333 5.13 0.00 35.02 1.52
60 61 8.079203 TGCGTAACTTGATGTCAATTGTAAAAT 58.921 29.630 5.13 0.00 35.02 1.82
61 62 8.365210 GCGTAACTTGATGTCAATTGTAAAATG 58.635 33.333 5.13 0.00 35.02 2.32
62 63 9.393249 CGTAACTTGATGTCAATTGTAAAATGT 57.607 29.630 5.13 0.00 35.02 2.71
66 67 9.677567 ACTTGATGTCAATTGTAAAATGTACAC 57.322 29.630 5.13 0.00 35.02 2.90
67 68 9.128107 CTTGATGTCAATTGTAAAATGTACACC 57.872 33.333 5.13 0.00 35.02 4.16
68 69 8.171164 TGATGTCAATTGTAAAATGTACACCA 57.829 30.769 5.13 0.00 0.00 4.17
69 70 8.296000 TGATGTCAATTGTAAAATGTACACCAG 58.704 33.333 5.13 0.00 0.00 4.00
70 71 6.442952 TGTCAATTGTAAAATGTACACCAGC 58.557 36.000 5.13 0.00 0.00 4.85
71 72 5.861787 GTCAATTGTAAAATGTACACCAGCC 59.138 40.000 5.13 0.00 0.00 4.85
72 73 5.536538 TCAATTGTAAAATGTACACCAGCCA 59.463 36.000 5.13 0.00 0.00 4.75
73 74 5.643379 ATTGTAAAATGTACACCAGCCAG 57.357 39.130 0.00 0.00 0.00 4.85
74 75 3.417101 TGTAAAATGTACACCAGCCAGG 58.583 45.455 0.00 0.00 45.67 4.45
75 76 1.923356 AAAATGTACACCAGCCAGGG 58.077 50.000 0.00 0.00 43.89 4.45
95 96 3.467374 GGAACCCAGCAACAATTTTGA 57.533 42.857 0.00 0.00 0.00 2.69
96 97 3.392882 GGAACCCAGCAACAATTTTGAG 58.607 45.455 0.00 0.00 0.00 3.02
97 98 3.069443 GGAACCCAGCAACAATTTTGAGA 59.931 43.478 0.00 0.00 0.00 3.27
98 99 4.442753 GGAACCCAGCAACAATTTTGAGAA 60.443 41.667 0.00 0.00 0.00 2.87
99 100 4.751767 ACCCAGCAACAATTTTGAGAAA 57.248 36.364 0.00 0.00 0.00 2.52
100 101 5.294734 ACCCAGCAACAATTTTGAGAAAT 57.705 34.783 0.00 0.00 37.06 2.17
101 102 5.683681 ACCCAGCAACAATTTTGAGAAATT 58.316 33.333 0.00 0.00 44.24 1.82
123 124 3.880040 GGGAATTTGGCCCCATTTG 57.120 52.632 0.00 0.00 42.24 2.32
124 125 0.255604 GGGAATTTGGCCCCATTTGG 59.744 55.000 0.00 0.00 42.24 3.28
132 133 3.287445 CCCCATTTGGCTCCAACG 58.713 61.111 0.00 0.00 35.46 4.10
133 134 1.606313 CCCCATTTGGCTCCAACGT 60.606 57.895 0.00 0.00 35.46 3.99
134 135 1.184970 CCCCATTTGGCTCCAACGTT 61.185 55.000 0.00 0.00 35.46 3.99
135 136 0.678950 CCCATTTGGCTCCAACGTTT 59.321 50.000 0.00 0.00 35.46 3.60
136 137 1.889829 CCCATTTGGCTCCAACGTTTA 59.110 47.619 0.00 0.00 35.46 2.01
137 138 2.352323 CCCATTTGGCTCCAACGTTTAC 60.352 50.000 0.00 0.00 35.46 2.01
138 139 2.352323 CCATTTGGCTCCAACGTTTACC 60.352 50.000 0.00 0.00 35.46 2.85
139 140 2.351706 TTTGGCTCCAACGTTTACCT 57.648 45.000 0.00 0.00 35.46 3.08
140 141 2.351706 TTGGCTCCAACGTTTACCTT 57.648 45.000 0.00 0.00 0.00 3.50
141 142 2.351706 TGGCTCCAACGTTTACCTTT 57.648 45.000 0.00 0.00 0.00 3.11
142 143 2.657143 TGGCTCCAACGTTTACCTTTT 58.343 42.857 0.00 0.00 0.00 2.27
143 144 2.619646 TGGCTCCAACGTTTACCTTTTC 59.380 45.455 0.00 0.00 0.00 2.29
144 145 2.030540 GGCTCCAACGTTTACCTTTTCC 60.031 50.000 0.00 0.00 0.00 3.13
145 146 2.030540 GCTCCAACGTTTACCTTTTCCC 60.031 50.000 0.00 0.00 0.00 3.97
146 147 3.215975 CTCCAACGTTTACCTTTTCCCA 58.784 45.455 0.00 0.00 0.00 4.37
147 148 3.215975 TCCAACGTTTACCTTTTCCCAG 58.784 45.455 0.00 0.00 0.00 4.45
148 149 3.117963 TCCAACGTTTACCTTTTCCCAGA 60.118 43.478 0.00 0.00 0.00 3.86
149 150 3.252458 CCAACGTTTACCTTTTCCCAGAG 59.748 47.826 0.00 0.00 0.00 3.35
150 151 2.501261 ACGTTTACCTTTTCCCAGAGC 58.499 47.619 0.00 0.00 0.00 4.09
151 152 2.158726 ACGTTTACCTTTTCCCAGAGCA 60.159 45.455 0.00 0.00 0.00 4.26
152 153 2.882137 CGTTTACCTTTTCCCAGAGCAA 59.118 45.455 0.00 0.00 0.00 3.91
153 154 3.304458 CGTTTACCTTTTCCCAGAGCAAC 60.304 47.826 0.00 0.00 0.00 4.17
154 155 3.586470 TTACCTTTTCCCAGAGCAACA 57.414 42.857 0.00 0.00 0.00 3.33
155 156 2.452600 ACCTTTTCCCAGAGCAACAA 57.547 45.000 0.00 0.00 0.00 2.83
156 157 2.962859 ACCTTTTCCCAGAGCAACAAT 58.037 42.857 0.00 0.00 0.00 2.71
157 158 3.308401 ACCTTTTCCCAGAGCAACAATT 58.692 40.909 0.00 0.00 0.00 2.32
158 159 3.711190 ACCTTTTCCCAGAGCAACAATTT 59.289 39.130 0.00 0.00 0.00 1.82
159 160 4.898861 ACCTTTTCCCAGAGCAACAATTTA 59.101 37.500 0.00 0.00 0.00 1.40
160 161 5.011023 ACCTTTTCCCAGAGCAACAATTTAG 59.989 40.000 0.00 0.00 0.00 1.85
161 162 5.243730 CCTTTTCCCAGAGCAACAATTTAGA 59.756 40.000 0.00 0.00 0.00 2.10
162 163 5.964958 TTTCCCAGAGCAACAATTTAGAG 57.035 39.130 0.00 0.00 0.00 2.43
163 164 4.908601 TCCCAGAGCAACAATTTAGAGA 57.091 40.909 0.00 0.00 0.00 3.10
164 165 5.241403 TCCCAGAGCAACAATTTAGAGAA 57.759 39.130 0.00 0.00 0.00 2.87
165 166 5.630121 TCCCAGAGCAACAATTTAGAGAAA 58.370 37.500 0.00 0.00 0.00 2.52
166 167 6.068010 TCCCAGAGCAACAATTTAGAGAAAA 58.932 36.000 0.00 0.00 0.00 2.29
167 168 6.721208 TCCCAGAGCAACAATTTAGAGAAAAT 59.279 34.615 0.00 0.00 39.56 1.82
168 169 7.233348 TCCCAGAGCAACAATTTAGAGAAAATT 59.767 33.333 0.00 0.00 46.48 1.82
182 183 8.746052 TTAGAGAAAATTGAGAAACTGAACCA 57.254 30.769 0.00 0.00 0.00 3.67
183 184 7.830099 AGAGAAAATTGAGAAACTGAACCAT 57.170 32.000 0.00 0.00 0.00 3.55
184 185 8.242729 AGAGAAAATTGAGAAACTGAACCATT 57.757 30.769 0.00 0.00 0.00 3.16
185 186 8.355913 AGAGAAAATTGAGAAACTGAACCATTC 58.644 33.333 0.00 0.00 0.00 2.67
186 187 7.141363 AGAAAATTGAGAAACTGAACCATTCG 58.859 34.615 0.00 0.00 0.00 3.34
187 188 5.376854 AATTGAGAAACTGAACCATTCGG 57.623 39.130 0.00 0.00 41.86 4.30
196 197 4.337013 ACCATTCGGTCCCAATGC 57.663 55.556 3.78 0.00 44.71 3.56
197 198 1.379843 ACCATTCGGTCCCAATGCC 60.380 57.895 3.78 0.00 44.71 4.40
198 199 1.076777 CCATTCGGTCCCAATGCCT 60.077 57.895 3.78 0.00 30.94 4.75
199 200 0.684153 CCATTCGGTCCCAATGCCTT 60.684 55.000 3.78 0.00 30.94 4.35
200 201 1.409521 CCATTCGGTCCCAATGCCTTA 60.410 52.381 3.78 0.00 30.94 2.69
201 202 2.586425 CATTCGGTCCCAATGCCTTAT 58.414 47.619 0.00 0.00 0.00 1.73
202 203 2.341846 TTCGGTCCCAATGCCTTATC 57.658 50.000 0.00 0.00 0.00 1.75
203 204 1.507140 TCGGTCCCAATGCCTTATCT 58.493 50.000 0.00 0.00 0.00 1.98
204 205 1.140852 TCGGTCCCAATGCCTTATCTG 59.859 52.381 0.00 0.00 0.00 2.90
205 206 1.134098 CGGTCCCAATGCCTTATCTGT 60.134 52.381 0.00 0.00 0.00 3.41
206 207 2.683742 CGGTCCCAATGCCTTATCTGTT 60.684 50.000 0.00 0.00 0.00 3.16
207 208 3.365472 GGTCCCAATGCCTTATCTGTTT 58.635 45.455 0.00 0.00 0.00 2.83
208 209 3.769300 GGTCCCAATGCCTTATCTGTTTT 59.231 43.478 0.00 0.00 0.00 2.43
209 210 4.381932 GGTCCCAATGCCTTATCTGTTTTG 60.382 45.833 0.00 0.00 0.00 2.44
210 211 3.195396 TCCCAATGCCTTATCTGTTTTGC 59.805 43.478 0.00 0.00 0.00 3.68
211 212 3.524541 CCAATGCCTTATCTGTTTTGCC 58.475 45.455 0.00 0.00 0.00 4.52
212 213 3.055963 CCAATGCCTTATCTGTTTTGCCA 60.056 43.478 0.00 0.00 0.00 4.92
213 214 3.874392 ATGCCTTATCTGTTTTGCCAC 57.126 42.857 0.00 0.00 0.00 5.01
214 215 1.892474 TGCCTTATCTGTTTTGCCACC 59.108 47.619 0.00 0.00 0.00 4.61
215 216 1.892474 GCCTTATCTGTTTTGCCACCA 59.108 47.619 0.00 0.00 0.00 4.17
216 217 2.352715 GCCTTATCTGTTTTGCCACCAC 60.353 50.000 0.00 0.00 0.00 4.16
217 218 2.095263 CCTTATCTGTTTTGCCACCACG 60.095 50.000 0.00 0.00 0.00 4.94
218 219 2.264005 TATCTGTTTTGCCACCACGT 57.736 45.000 0.00 0.00 0.00 4.49
219 220 0.667993 ATCTGTTTTGCCACCACGTG 59.332 50.000 9.08 9.08 0.00 4.49
220 221 0.678366 TCTGTTTTGCCACCACGTGT 60.678 50.000 15.65 0.00 0.00 4.49
221 222 0.248458 CTGTTTTGCCACCACGTGTC 60.248 55.000 15.65 1.19 0.00 3.67
222 223 1.298041 GTTTTGCCACCACGTGTCG 60.298 57.895 15.65 4.56 0.00 4.35
223 224 1.745864 TTTTGCCACCACGTGTCGT 60.746 52.632 15.65 2.88 42.36 4.34
224 225 1.306642 TTTTGCCACCACGTGTCGTT 61.307 50.000 15.65 0.00 38.32 3.85
225 226 1.983196 TTTGCCACCACGTGTCGTTG 61.983 55.000 15.65 5.81 38.32 4.10
226 227 2.893404 GCCACCACGTGTCGTTGT 60.893 61.111 15.65 1.23 38.32 3.32
228 229 2.323105 CACCACGTGTCGTTGTGC 59.677 61.111 15.65 0.00 43.96 4.57
229 230 2.171079 CACCACGTGTCGTTGTGCT 61.171 57.895 15.65 0.00 43.96 4.40
230 231 2.171079 ACCACGTGTCGTTGTGCTG 61.171 57.895 15.65 0.00 38.32 4.41
231 232 2.053116 CACGTGTCGTTGTGCTGC 60.053 61.111 7.58 0.00 38.32 5.25
232 233 2.202878 ACGTGTCGTTGTGCTGCT 60.203 55.556 0.00 0.00 36.35 4.24
233 234 1.066752 ACGTGTCGTTGTGCTGCTA 59.933 52.632 0.00 0.00 36.35 3.49
234 235 0.528901 ACGTGTCGTTGTGCTGCTAA 60.529 50.000 0.00 0.00 36.35 3.09
235 236 0.579630 CGTGTCGTTGTGCTGCTAAA 59.420 50.000 0.00 0.00 0.00 1.85
236 237 1.656429 CGTGTCGTTGTGCTGCTAAAC 60.656 52.381 0.00 4.65 0.00 2.01
237 238 1.329292 GTGTCGTTGTGCTGCTAAACA 59.671 47.619 15.02 3.54 0.00 2.83
238 239 2.010497 TGTCGTTGTGCTGCTAAACAA 58.990 42.857 15.02 8.79 34.01 2.83
239 240 2.616376 TGTCGTTGTGCTGCTAAACAAT 59.384 40.909 15.02 0.00 38.47 2.71
240 241 3.226347 GTCGTTGTGCTGCTAAACAATC 58.774 45.455 15.02 6.43 38.47 2.67
241 242 2.875317 TCGTTGTGCTGCTAAACAATCA 59.125 40.909 15.02 1.74 38.47 2.57
242 243 3.501828 TCGTTGTGCTGCTAAACAATCAT 59.498 39.130 15.02 0.00 38.47 2.45
243 244 4.693095 TCGTTGTGCTGCTAAACAATCATA 59.307 37.500 15.02 0.00 38.47 2.15
244 245 5.353956 TCGTTGTGCTGCTAAACAATCATAT 59.646 36.000 15.02 0.00 38.47 1.78
245 246 6.029607 CGTTGTGCTGCTAAACAATCATATT 58.970 36.000 15.02 0.00 38.47 1.28
246 247 6.195244 CGTTGTGCTGCTAAACAATCATATTC 59.805 38.462 15.02 0.00 38.47 1.75
247 248 6.135290 TGTGCTGCTAAACAATCATATTCC 57.865 37.500 0.00 0.00 0.00 3.01
248 249 5.067674 TGTGCTGCTAAACAATCATATTCCC 59.932 40.000 0.00 0.00 0.00 3.97
249 250 4.584325 TGCTGCTAAACAATCATATTCCCC 59.416 41.667 0.00 0.00 0.00 4.81
250 251 4.829492 GCTGCTAAACAATCATATTCCCCT 59.171 41.667 0.00 0.00 0.00 4.79
251 252 5.048434 GCTGCTAAACAATCATATTCCCCTC 60.048 44.000 0.00 0.00 0.00 4.30
252 253 5.063204 TGCTAAACAATCATATTCCCCTCG 58.937 41.667 0.00 0.00 0.00 4.63
253 254 5.163248 TGCTAAACAATCATATTCCCCTCGA 60.163 40.000 0.00 0.00 0.00 4.04
254 255 5.409826 GCTAAACAATCATATTCCCCTCGAG 59.590 44.000 5.13 5.13 0.00 4.04
255 256 5.630415 AAACAATCATATTCCCCTCGAGA 57.370 39.130 15.71 0.00 0.00 4.04
256 257 4.881019 ACAATCATATTCCCCTCGAGAG 57.119 45.455 15.71 0.00 0.00 3.20
277 278 9.004717 CGAGAGGAAGTACTAGATGATATTCAA 57.995 37.037 0.00 0.00 0.00 2.69
302 303 0.107993 AGCATCACATGGACGACAGG 60.108 55.000 0.00 0.00 36.81 4.00
304 305 1.675714 GCATCACATGGACGACAGGAA 60.676 52.381 0.00 0.00 34.35 3.36
316 317 7.083875 TGGACGACAGGAAAAATTTGATATC 57.916 36.000 0.00 0.00 0.00 1.63
351 352 4.899352 AGTGAGGCTGATACTCAGTTTT 57.101 40.909 0.00 0.00 45.94 2.43
353 354 6.360370 AGTGAGGCTGATACTCAGTTTTTA 57.640 37.500 0.00 0.00 45.94 1.52
354 355 6.769512 AGTGAGGCTGATACTCAGTTTTTAA 58.230 36.000 0.00 0.00 45.94 1.52
360 361 8.322091 AGGCTGATACTCAGTTTTTAATGTACT 58.678 33.333 6.06 0.00 45.94 2.73
410 411 8.601476 CCTCTGTACCAAAATATAAGACGTTTC 58.399 37.037 0.00 0.00 0.00 2.78
412 413 9.146984 TCTGTACCAAAATATAAGACGTTTCTG 57.853 33.333 0.00 0.00 29.98 3.02
413 414 7.745015 TGTACCAAAATATAAGACGTTTCTGC 58.255 34.615 0.00 0.00 29.98 4.26
415 416 5.163794 ACCAAAATATAAGACGTTTCTGCCG 60.164 40.000 0.00 0.00 29.98 5.69
416 417 5.263185 CAAAATATAAGACGTTTCTGCCGG 58.737 41.667 0.00 0.00 29.98 6.13
417 418 1.930567 TATAAGACGTTTCTGCCGGC 58.069 50.000 22.73 22.73 29.98 6.13
419 420 0.669318 TAAGACGTTTCTGCCGGCTG 60.669 55.000 29.70 27.77 44.46 4.85
422 423 2.171489 GACGTTTCTGCCGGCTGTTC 62.171 60.000 29.70 18.72 0.00 3.18
423 424 2.556287 GTTTCTGCCGGCTGTTCG 59.444 61.111 29.70 10.76 0.00 3.95
430 431 4.058797 CCGGCTGTTCGGTTTCTT 57.941 55.556 0.00 0.00 44.60 2.52
471 474 4.058817 ACGGTTTCTCTTGCTCAAAGTAG 58.941 43.478 0.00 0.00 37.18 2.57
472 475 3.120511 CGGTTTCTCTTGCTCAAAGTAGC 60.121 47.826 0.00 0.00 43.08 3.58
497 500 4.141367 TGTGTTTCATTGGTCTGGTAGGAA 60.141 41.667 0.00 0.00 0.00 3.36
507 510 4.349636 TGGTCTGGTAGGAACAAGATTTGA 59.650 41.667 0.00 0.00 37.99 2.69
532 535 2.599578 CCTGCAGCCTTGGCAAGT 60.600 61.111 24.57 5.49 41.39 3.16
543 546 2.575461 GGCAAGTTGGCATCCTGC 59.425 61.111 23.44 10.07 43.14 4.85
590 593 2.573869 CGCAAGGGAAGCTCGAGA 59.426 61.111 18.75 0.00 0.00 4.04
591 594 1.079819 CGCAAGGGAAGCTCGAGAA 60.080 57.895 18.75 0.00 0.00 2.87
592 595 0.670546 CGCAAGGGAAGCTCGAGAAA 60.671 55.000 18.75 0.00 0.00 2.52
593 596 1.743996 GCAAGGGAAGCTCGAGAAAT 58.256 50.000 18.75 0.00 0.00 2.17
594 597 2.738643 CGCAAGGGAAGCTCGAGAAATA 60.739 50.000 18.75 0.00 0.00 1.40
595 598 2.609916 GCAAGGGAAGCTCGAGAAATAC 59.390 50.000 18.75 0.98 0.00 1.89
596 599 3.680196 GCAAGGGAAGCTCGAGAAATACT 60.680 47.826 18.75 5.05 0.00 2.12
597 600 4.508662 CAAGGGAAGCTCGAGAAATACTT 58.491 43.478 18.75 9.39 0.00 2.24
598 601 4.130286 AGGGAAGCTCGAGAAATACTTG 57.870 45.455 18.75 0.00 0.00 3.16
599 602 3.118592 AGGGAAGCTCGAGAAATACTTGG 60.119 47.826 18.75 0.00 0.00 3.61
600 603 2.609916 GGAAGCTCGAGAAATACTTGGC 59.390 50.000 18.75 0.00 0.00 4.52
601 604 2.317530 AGCTCGAGAAATACTTGGCC 57.682 50.000 18.75 0.00 31.25 5.36
602 605 1.555075 AGCTCGAGAAATACTTGGCCA 59.445 47.619 18.75 0.00 31.25 5.36
603 606 2.171448 AGCTCGAGAAATACTTGGCCAT 59.829 45.455 18.75 0.00 31.25 4.40
604 607 2.545946 GCTCGAGAAATACTTGGCCATC 59.454 50.000 18.75 0.00 0.00 3.51
605 608 3.134458 CTCGAGAAATACTTGGCCATCC 58.866 50.000 6.09 0.00 0.00 3.51
606 609 2.771943 TCGAGAAATACTTGGCCATCCT 59.228 45.455 6.09 0.00 0.00 3.24
607 610 2.874701 CGAGAAATACTTGGCCATCCTG 59.125 50.000 6.09 0.00 0.00 3.86
608 611 2.620585 GAGAAATACTTGGCCATCCTGC 59.379 50.000 6.09 0.00 0.00 4.85
703 706 9.319223 CTAAAAGCGAGAGATTAAACTGAAAAC 57.681 33.333 0.00 0.00 39.83 2.43
704 707 7.497925 AAAGCGAGAGATTAAACTGAAAACT 57.502 32.000 0.00 0.00 39.83 2.66
726 729 5.182001 ACTGAAATGTGCAAAGACATCCTAC 59.818 40.000 0.00 0.00 35.43 3.18
730 733 0.392461 TGCAAAGACATCCTACGCCC 60.392 55.000 0.00 0.00 0.00 6.13
781 793 3.670627 GCGCTTCCTTGGAATAACTTGTG 60.671 47.826 0.00 0.00 0.00 3.33
783 795 3.507622 GCTTCCTTGGAATAACTTGTGCT 59.492 43.478 2.24 0.00 0.00 4.40
784 796 4.700213 GCTTCCTTGGAATAACTTGTGCTA 59.300 41.667 2.24 0.00 0.00 3.49
786 798 5.499004 TCCTTGGAATAACTTGTGCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
827 839 1.068250 CTAGCCTCGCCTACCTTGC 59.932 63.158 0.00 0.00 0.00 4.01
828 840 1.676678 CTAGCCTCGCCTACCTTGCA 61.677 60.000 0.00 0.00 0.00 4.08
829 841 1.048724 TAGCCTCGCCTACCTTGCAT 61.049 55.000 0.00 0.00 0.00 3.96
830 842 2.182842 GCCTCGCCTACCTTGCATG 61.183 63.158 0.00 0.00 0.00 4.06
831 843 1.221840 CCTCGCCTACCTTGCATGT 59.778 57.895 0.00 0.00 0.00 3.21
832 844 0.811616 CCTCGCCTACCTTGCATGTC 60.812 60.000 0.00 0.00 0.00 3.06
833 845 0.811616 CTCGCCTACCTTGCATGTCC 60.812 60.000 0.00 0.00 0.00 4.02
834 846 1.078497 CGCCTACCTTGCATGTCCA 60.078 57.895 0.00 0.00 0.00 4.02
835 847 1.091771 CGCCTACCTTGCATGTCCAG 61.092 60.000 0.00 0.00 0.00 3.86
836 848 1.379642 GCCTACCTTGCATGTCCAGC 61.380 60.000 0.00 0.00 0.00 4.85
936 959 1.603455 CACCCACGCCCAGACAAAT 60.603 57.895 0.00 0.00 0.00 2.32
951 975 5.009010 CCAGACAAATCACACAGCTTACTTT 59.991 40.000 0.00 0.00 0.00 2.66
973 997 5.576563 TCCTTTCCCAACATAGTTCTTGA 57.423 39.130 0.00 0.00 0.00 3.02
974 998 5.947663 TCCTTTCCCAACATAGTTCTTGAA 58.052 37.500 0.00 0.00 0.00 2.69
976 1000 5.534654 CCTTTCCCAACATAGTTCTTGAACA 59.465 40.000 14.80 3.00 0.00 3.18
1041 1093 0.976641 TCAAGAGGATGGACAGCGTT 59.023 50.000 0.00 0.00 0.00 4.84
1092 1144 0.747255 GCCGCTACCAGATGAAGAGA 59.253 55.000 0.00 0.00 0.00 3.10
1240 1292 2.315176 TCATTTGTTCCACCCAGGTTG 58.685 47.619 0.00 0.00 39.02 3.77
1257 1309 5.278561 CCAGGTTGGTTGTTATTTCGCTTTA 60.279 40.000 0.00 0.00 31.35 1.85
1258 1310 5.856455 CAGGTTGGTTGTTATTTCGCTTTAG 59.144 40.000 0.00 0.00 0.00 1.85
1259 1311 5.533528 AGGTTGGTTGTTATTTCGCTTTAGT 59.466 36.000 0.00 0.00 0.00 2.24
1261 1313 7.392393 AGGTTGGTTGTTATTTCGCTTTAGTAT 59.608 33.333 0.00 0.00 0.00 2.12
1263 1315 9.058424 GTTGGTTGTTATTTCGCTTTAGTATTC 57.942 33.333 0.00 0.00 0.00 1.75
1281 1333 1.909700 TCACCCAATTCACTTCTGCC 58.090 50.000 0.00 0.00 0.00 4.85
1283 1335 0.110486 ACCCAATTCACTTCTGCCGT 59.890 50.000 0.00 0.00 0.00 5.68
1284 1336 1.349688 ACCCAATTCACTTCTGCCGTA 59.650 47.619 0.00 0.00 0.00 4.02
1285 1337 1.737793 CCCAATTCACTTCTGCCGTAC 59.262 52.381 0.00 0.00 0.00 3.67
1288 1340 3.440173 CCAATTCACTTCTGCCGTACAAT 59.560 43.478 0.00 0.00 0.00 2.71
1289 1341 4.634004 CCAATTCACTTCTGCCGTACAATA 59.366 41.667 0.00 0.00 0.00 1.90
1290 1342 5.220662 CCAATTCACTTCTGCCGTACAATAG 60.221 44.000 0.00 0.00 0.00 1.73
1291 1343 2.888594 TCACTTCTGCCGTACAATAGC 58.111 47.619 0.00 0.00 0.00 2.97
1293 1345 3.697542 TCACTTCTGCCGTACAATAGCTA 59.302 43.478 0.00 0.00 0.00 3.32
1322 1378 6.662865 TGATAGAAGGAAGGAGAGCTTATG 57.337 41.667 0.00 0.00 0.00 1.90
1326 1382 5.988287 AGAAGGAAGGAGAGCTTATGAAAG 58.012 41.667 0.00 0.00 35.68 2.62
1328 1384 6.670027 AGAAGGAAGGAGAGCTTATGAAAGTA 59.330 38.462 0.00 0.00 34.99 2.24
1331 1388 7.278875 AGGAAGGAGAGCTTATGAAAGTATTG 58.721 38.462 0.00 0.00 34.99 1.90
1333 1390 7.011857 GGAAGGAGAGCTTATGAAAGTATTGTG 59.988 40.741 0.00 0.00 34.99 3.33
1336 1393 6.258947 GGAGAGCTTATGAAAGTATTGTGTCC 59.741 42.308 0.00 0.00 34.99 4.02
1339 1398 7.335422 AGAGCTTATGAAAGTATTGTGTCCTTG 59.665 37.037 0.00 0.00 34.99 3.61
1435 1494 2.654912 CGTCAAGGTTCACGCCGAC 61.655 63.158 0.00 0.00 0.00 4.79
1519 1578 7.919690 ACGATGAGAAATGGTATGTACATTTG 58.080 34.615 14.77 0.00 45.60 2.32
1560 1624 6.387041 TCAGATGGATGAGAAATGCAATTC 57.613 37.500 6.38 6.38 33.67 2.17
1573 1644 8.092521 AGAAATGCAATTCGATTCTATGTAGG 57.907 34.615 8.82 0.00 33.67 3.18
1593 1664 7.309920 TGTAGGTGTGAAACTGAAAAAGAAAC 58.690 34.615 0.00 0.00 38.04 2.78
1596 1667 7.441836 AGGTGTGAAACTGAAAAAGAAACTTT 58.558 30.769 0.00 0.00 38.04 2.66
1883 1962 5.366477 TGGTCAGACTCATATATCCTTGCAA 59.634 40.000 0.00 0.00 0.00 4.08
1889 1968 9.276590 CAGACTCATATATCCTTGCAAAACATA 57.723 33.333 0.00 0.00 0.00 2.29
1928 2007 2.066262 GACACAATCGACACGGTGAAT 58.934 47.619 16.29 2.52 35.33 2.57
1937 2016 2.734606 CGACACGGTGAATAAGCTTCAA 59.265 45.455 16.29 0.00 0.00 2.69
2230 2321 1.002069 TCAGCAGGGTTCCATCCATT 58.998 50.000 0.00 0.00 0.00 3.16
2245 2336 7.959689 TCCATCCATTTTTAACATTGTTGTG 57.040 32.000 12.30 3.72 35.83 3.33
2603 2712 4.785376 AGACTGATACCAGATTCCAAAGGT 59.215 41.667 0.00 0.00 43.02 3.50
2820 3313 8.015087 TGTGTTAAGAGATCTTGCGTAAAATTG 58.985 33.333 5.34 0.00 37.40 2.32
2933 3426 3.266686 TTGGTGGCGTCCCTCATGG 62.267 63.158 0.00 0.00 0.00 3.66
3156 3651 5.748402 TCCTGTCAATTCACTGCTGATATT 58.252 37.500 0.00 0.00 0.00 1.28
3607 4142 3.008266 TGTGATGCTGTCAAATCAGAGGA 59.992 43.478 0.00 0.00 38.90 3.71
3697 4261 1.955080 GGACTAGTCGAGTGGTATGGG 59.045 57.143 16.56 0.00 39.06 4.00
3787 4366 4.141135 TCCAAGGACCGAGAAGAGATAGAT 60.141 45.833 0.00 0.00 0.00 1.98
3829 4408 4.794278 TTTGATCGACAAGTACCAGCTA 57.206 40.909 0.00 0.00 39.77 3.32
3945 4524 9.899661 TGTTCAGGTATACAATAAGCTACAAAT 57.100 29.630 5.01 0.00 0.00 2.32
4079 5323 1.268899 CTTTGGTTTCAGCCTGCTCTG 59.731 52.381 0.00 0.00 35.46 3.35
4181 7004 1.299165 GATCATCGTCGACGGGGTG 60.299 63.158 35.05 28.27 40.29 4.61
4360 7209 0.969894 CAGGAGTGGTCGTCTTCCTT 59.030 55.000 0.00 0.00 0.00 3.36
4363 7214 1.669211 GGAGTGGTCGTCTTCCTTTCG 60.669 57.143 0.00 0.00 0.00 3.46
4491 7354 1.274712 AGGAAGAGAGAGTGGCCAAG 58.725 55.000 7.24 0.00 0.00 3.61
4556 7419 6.377080 ACCTGGTGAGTCTATGATCTGATAA 58.623 40.000 0.00 0.00 0.00 1.75
4614 7502 8.847196 ACAAGATCAATGACCAATATCATCTTG 58.153 33.333 14.02 14.02 42.46 3.02
4755 7657 4.323751 CGCACTCTTACGAAATTTACTGC 58.676 43.478 0.00 0.00 0.00 4.40
4802 7720 1.043673 CCCGTTTGTTGTTTGGGGGA 61.044 55.000 0.00 0.00 36.16 4.81
4884 7805 1.030457 CCTCCTTCCAGCAATGCATC 58.970 55.000 8.35 0.00 0.00 3.91
4929 7886 3.433615 GTGATGAGTACTGACCTTTGTGC 59.566 47.826 0.00 0.00 0.00 4.57
5056 8020 2.945008 GCTCGATTCATTCCATTGGTGA 59.055 45.455 1.86 0.00 0.00 4.02
5067 8031 3.937814 TCCATTGGTGACATAGTGTGAC 58.062 45.455 1.86 0.00 42.32 3.67
5154 8122 8.641499 TGGAAACATGTAACAAAGATCAAAAC 57.359 30.769 0.00 0.00 33.40 2.43
5228 8196 5.233988 GCTGAGAATCTACTTGACACAAGT 58.766 41.667 18.62 18.62 34.92 3.16
5286 8254 7.902920 AATTGCCTTGTACAATCATTATCCT 57.097 32.000 9.13 0.00 36.74 3.24
5293 8261 1.774254 ACAATCATTATCCTCCCCGCA 59.226 47.619 0.00 0.00 0.00 5.69
5490 8462 2.542020 TTCGACAATGCCACTCAGAA 57.458 45.000 0.00 0.00 0.00 3.02
5505 8477 6.374333 GCCACTCAGAATTTCACCATACTTTA 59.626 38.462 0.00 0.00 0.00 1.85
5506 8478 7.094377 GCCACTCAGAATTTCACCATACTTTAA 60.094 37.037 0.00 0.00 0.00 1.52
5551 8523 1.977293 GCACCCTTCTAGGCCAGAGG 61.977 65.000 5.01 6.43 33.83 3.69
5576 8548 3.237268 ACAAAACTGCAAGGGTCCATA 57.763 42.857 0.00 0.00 39.30 2.74
5597 8569 6.811665 CCATAATGCATCACATGATTCCAATC 59.188 38.462 14.33 0.00 39.60 2.67
5642 8615 1.442773 CCCACCAGATCCATGATCCT 58.557 55.000 0.00 0.00 39.66 3.24
5643 8616 1.350351 CCCACCAGATCCATGATCCTC 59.650 57.143 0.00 0.00 39.66 3.71
5647 8641 0.975135 CAGATCCATGATCCTCCGCT 59.025 55.000 0.00 0.00 39.66 5.52
5694 8689 2.107041 AAACCATCGTCACGCCTCCA 62.107 55.000 0.00 0.00 0.00 3.86
5783 8778 8.649810 CAAAAGCTGCATTGTCAATATTTTTC 57.350 30.769 1.02 0.00 0.00 2.29
5795 8790 4.219070 TCAATATTTTTCAGCAGCAGCAGT 59.781 37.500 3.17 0.00 45.49 4.40
5811 8808 4.142138 GCAGCAGTAGTACCAGAGTGTAAT 60.142 45.833 0.00 0.00 0.00 1.89
5906 8903 6.931838 ACTCACAAAGATTACGGAAGACATA 58.068 36.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.931005 CAATTCGCCGTTCCTAGAGC 59.069 55.000 0.00 0.00 0.00 4.09
1 2 2.295253 ACAATTCGCCGTTCCTAGAG 57.705 50.000 0.00 0.00 0.00 2.43
2 3 2.754946 AACAATTCGCCGTTCCTAGA 57.245 45.000 0.00 0.00 0.00 2.43
5 6 2.621526 AGAAAAACAATTCGCCGTTCCT 59.378 40.909 0.00 0.00 34.46 3.36
7 8 3.623863 TGAGAAAAACAATTCGCCGTTC 58.376 40.909 0.00 0.00 34.46 3.95
8 9 3.701532 TGAGAAAAACAATTCGCCGTT 57.298 38.095 0.00 0.00 34.46 4.44
9 10 3.564511 CATGAGAAAAACAATTCGCCGT 58.435 40.909 0.00 0.00 34.46 5.68
10 11 2.916716 CCATGAGAAAAACAATTCGCCG 59.083 45.455 0.00 0.00 34.46 6.46
11 12 4.168760 CTCCATGAGAAAAACAATTCGCC 58.831 43.478 0.00 0.00 34.46 5.54
12 13 4.618489 CACTCCATGAGAAAAACAATTCGC 59.382 41.667 0.00 0.00 34.46 4.70
13 14 4.618489 GCACTCCATGAGAAAAACAATTCG 59.382 41.667 0.00 0.00 34.46 3.34
14 15 4.618489 CGCACTCCATGAGAAAAACAATTC 59.382 41.667 0.00 0.00 33.32 2.17
16 17 3.569701 ACGCACTCCATGAGAAAAACAAT 59.430 39.130 0.00 0.00 33.32 2.71
17 18 2.948979 ACGCACTCCATGAGAAAAACAA 59.051 40.909 0.00 0.00 33.32 2.83
18 19 2.571212 ACGCACTCCATGAGAAAAACA 58.429 42.857 0.00 0.00 33.32 2.83
19 20 4.213482 AGTTACGCACTCCATGAGAAAAAC 59.787 41.667 0.00 0.00 33.32 2.43
20 21 4.385825 AGTTACGCACTCCATGAGAAAAA 58.614 39.130 0.00 0.00 33.32 1.94
21 22 4.002906 AGTTACGCACTCCATGAGAAAA 57.997 40.909 0.00 0.00 33.32 2.29
22 23 3.678056 AGTTACGCACTCCATGAGAAA 57.322 42.857 0.00 0.00 33.32 2.52
23 24 3.006430 TCAAGTTACGCACTCCATGAGAA 59.994 43.478 0.00 0.00 32.94 2.87
24 25 2.560981 TCAAGTTACGCACTCCATGAGA 59.439 45.455 0.00 0.00 32.94 3.27
25 26 2.959516 TCAAGTTACGCACTCCATGAG 58.040 47.619 0.00 0.00 32.94 2.90
26 27 3.261580 CATCAAGTTACGCACTCCATGA 58.738 45.455 0.00 0.00 32.94 3.07
27 28 3.002791 ACATCAAGTTACGCACTCCATG 58.997 45.455 0.00 0.00 32.94 3.66
28 29 3.262420 GACATCAAGTTACGCACTCCAT 58.738 45.455 0.00 0.00 32.94 3.41
29 30 2.036604 TGACATCAAGTTACGCACTCCA 59.963 45.455 0.00 0.00 32.94 3.86
30 31 2.683968 TGACATCAAGTTACGCACTCC 58.316 47.619 0.00 0.00 32.94 3.85
31 32 4.928661 ATTGACATCAAGTTACGCACTC 57.071 40.909 0.23 0.00 39.47 3.51
32 33 4.515191 ACAATTGACATCAAGTTACGCACT 59.485 37.500 13.59 0.00 39.47 4.40
33 34 4.783242 ACAATTGACATCAAGTTACGCAC 58.217 39.130 13.59 0.00 39.47 5.34
34 35 6.546972 TTACAATTGACATCAAGTTACGCA 57.453 33.333 13.59 0.00 39.47 5.24
35 36 7.845617 TTTTACAATTGACATCAAGTTACGC 57.154 32.000 13.59 0.00 39.47 4.42
36 37 9.393249 ACATTTTACAATTGACATCAAGTTACG 57.607 29.630 13.59 0.00 39.47 3.18
40 41 9.677567 GTGTACATTTTACAATTGACATCAAGT 57.322 29.630 13.59 5.07 39.47 3.16
41 42 9.128107 GGTGTACATTTTACAATTGACATCAAG 57.872 33.333 13.59 0.00 39.47 3.02
42 43 8.633561 TGGTGTACATTTTACAATTGACATCAA 58.366 29.630 13.59 0.00 40.51 2.57
43 44 8.171164 TGGTGTACATTTTACAATTGACATCA 57.829 30.769 13.59 6.96 28.98 3.07
44 45 7.273381 GCTGGTGTACATTTTACAATTGACATC 59.727 37.037 13.59 4.26 0.00 3.06
45 46 7.090173 GCTGGTGTACATTTTACAATTGACAT 58.910 34.615 13.59 0.00 0.00 3.06
46 47 6.442952 GCTGGTGTACATTTTACAATTGACA 58.557 36.000 13.59 0.00 0.00 3.58
47 48 5.861787 GGCTGGTGTACATTTTACAATTGAC 59.138 40.000 13.59 0.00 0.00 3.18
48 49 5.536538 TGGCTGGTGTACATTTTACAATTGA 59.463 36.000 13.59 0.00 0.00 2.57
49 50 5.777802 TGGCTGGTGTACATTTTACAATTG 58.222 37.500 3.24 3.24 0.00 2.32
50 51 5.047377 CCTGGCTGGTGTACATTTTACAATT 60.047 40.000 0.00 0.00 0.00 2.32
51 52 4.462483 CCTGGCTGGTGTACATTTTACAAT 59.538 41.667 0.00 0.00 0.00 2.71
52 53 3.823873 CCTGGCTGGTGTACATTTTACAA 59.176 43.478 0.00 0.00 0.00 2.41
53 54 3.417101 CCTGGCTGGTGTACATTTTACA 58.583 45.455 0.00 0.00 0.00 2.41
54 55 2.752903 CCCTGGCTGGTGTACATTTTAC 59.247 50.000 9.73 0.00 0.00 2.01
55 56 2.291282 CCCCTGGCTGGTGTACATTTTA 60.291 50.000 9.73 0.00 0.00 1.52
56 57 1.549950 CCCCTGGCTGGTGTACATTTT 60.550 52.381 9.73 0.00 0.00 1.82
57 58 0.039618 CCCCTGGCTGGTGTACATTT 59.960 55.000 9.73 0.00 0.00 2.32
58 59 0.844661 TCCCCTGGCTGGTGTACATT 60.845 55.000 9.73 0.00 0.00 2.71
59 60 0.844661 TTCCCCTGGCTGGTGTACAT 60.845 55.000 9.73 0.00 0.00 2.29
60 61 1.462432 TTCCCCTGGCTGGTGTACA 60.462 57.895 9.73 0.00 0.00 2.90
61 62 1.002502 GTTCCCCTGGCTGGTGTAC 60.003 63.158 9.73 0.00 0.00 2.90
62 63 2.228480 GGTTCCCCTGGCTGGTGTA 61.228 63.158 9.73 0.00 0.00 2.90
63 64 3.580319 GGTTCCCCTGGCTGGTGT 61.580 66.667 9.73 0.00 0.00 4.16
64 65 4.366684 GGGTTCCCCTGGCTGGTG 62.367 72.222 9.73 0.00 41.34 4.17
65 66 4.938756 TGGGTTCCCCTGGCTGGT 62.939 66.667 9.73 0.00 45.70 4.00
66 67 4.052518 CTGGGTTCCCCTGGCTGG 62.053 72.222 2.96 2.96 45.70 4.85
67 68 4.748144 GCTGGGTTCCCCTGGCTG 62.748 72.222 5.34 0.00 45.70 4.85
69 70 4.299796 TTGCTGGGTTCCCCTGGC 62.300 66.667 5.34 8.98 45.70 4.85
70 71 2.283173 GTTGCTGGGTTCCCCTGG 60.283 66.667 5.34 0.00 45.70 4.45
71 72 0.542702 ATTGTTGCTGGGTTCCCCTG 60.543 55.000 5.34 2.46 45.70 4.45
72 73 0.190815 AATTGTTGCTGGGTTCCCCT 59.809 50.000 5.34 0.00 45.70 4.79
73 74 1.055849 AAATTGTTGCTGGGTTCCCC 58.944 50.000 5.34 0.00 45.71 4.81
74 75 2.103941 TCAAAATTGTTGCTGGGTTCCC 59.896 45.455 0.12 0.12 0.00 3.97
75 76 3.069443 TCTCAAAATTGTTGCTGGGTTCC 59.931 43.478 0.00 0.00 0.00 3.62
76 77 4.320608 TCTCAAAATTGTTGCTGGGTTC 57.679 40.909 0.00 0.00 0.00 3.62
77 78 4.751767 TTCTCAAAATTGTTGCTGGGTT 57.248 36.364 0.00 0.00 0.00 4.11
78 79 4.751767 TTTCTCAAAATTGTTGCTGGGT 57.248 36.364 0.00 0.00 0.00 4.51
105 106 0.255604 CCAAATGGGGCCAAATTCCC 59.744 55.000 4.39 0.00 43.42 3.97
106 107 3.880040 CCAAATGGGGCCAAATTCC 57.120 52.632 4.39 0.00 0.00 3.01
115 116 1.184970 AACGTTGGAGCCAAATGGGG 61.185 55.000 0.00 0.00 37.70 4.96
116 117 0.678950 AAACGTTGGAGCCAAATGGG 59.321 50.000 0.00 0.00 37.70 4.00
117 118 2.352323 GGTAAACGTTGGAGCCAAATGG 60.352 50.000 0.00 0.00 37.70 3.16
118 119 2.556622 AGGTAAACGTTGGAGCCAAATG 59.443 45.455 0.00 2.60 37.70 2.32
119 120 2.871453 AGGTAAACGTTGGAGCCAAAT 58.129 42.857 0.00 0.00 37.70 2.32
120 121 2.351706 AGGTAAACGTTGGAGCCAAA 57.648 45.000 0.00 0.00 37.70 3.28
121 122 2.351706 AAGGTAAACGTTGGAGCCAA 57.648 45.000 0.00 0.00 0.00 4.52
122 123 2.351706 AAAGGTAAACGTTGGAGCCA 57.648 45.000 0.00 0.00 0.00 4.75
123 124 2.030540 GGAAAAGGTAAACGTTGGAGCC 60.031 50.000 0.00 1.95 0.00 4.70
124 125 2.030540 GGGAAAAGGTAAACGTTGGAGC 60.031 50.000 0.00 2.78 0.00 4.70
125 126 3.215975 TGGGAAAAGGTAAACGTTGGAG 58.784 45.455 0.00 0.00 0.00 3.86
126 127 3.117963 TCTGGGAAAAGGTAAACGTTGGA 60.118 43.478 0.00 0.00 0.00 3.53
127 128 3.215975 TCTGGGAAAAGGTAAACGTTGG 58.784 45.455 0.00 0.00 0.00 3.77
128 129 3.304458 GCTCTGGGAAAAGGTAAACGTTG 60.304 47.826 0.00 0.00 0.00 4.10
129 130 2.882761 GCTCTGGGAAAAGGTAAACGTT 59.117 45.455 0.00 0.00 0.00 3.99
130 131 2.158726 TGCTCTGGGAAAAGGTAAACGT 60.159 45.455 0.00 0.00 0.00 3.99
131 132 2.500229 TGCTCTGGGAAAAGGTAAACG 58.500 47.619 0.00 0.00 0.00 3.60
132 133 3.634910 TGTTGCTCTGGGAAAAGGTAAAC 59.365 43.478 0.00 0.00 0.00 2.01
133 134 3.904717 TGTTGCTCTGGGAAAAGGTAAA 58.095 40.909 0.00 0.00 0.00 2.01
134 135 3.586470 TGTTGCTCTGGGAAAAGGTAA 57.414 42.857 0.00 0.00 0.00 2.85
135 136 3.586470 TTGTTGCTCTGGGAAAAGGTA 57.414 42.857 0.00 0.00 0.00 3.08
136 137 2.452600 TTGTTGCTCTGGGAAAAGGT 57.547 45.000 0.00 0.00 0.00 3.50
137 138 4.341366 AAATTGTTGCTCTGGGAAAAGG 57.659 40.909 0.00 0.00 0.00 3.11
138 139 6.207417 TCTCTAAATTGTTGCTCTGGGAAAAG 59.793 38.462 0.00 0.00 0.00 2.27
139 140 6.068010 TCTCTAAATTGTTGCTCTGGGAAAA 58.932 36.000 0.00 0.00 0.00 2.29
140 141 5.630121 TCTCTAAATTGTTGCTCTGGGAAA 58.370 37.500 0.00 0.00 0.00 3.13
141 142 5.241403 TCTCTAAATTGTTGCTCTGGGAA 57.759 39.130 0.00 0.00 0.00 3.97
142 143 4.908601 TCTCTAAATTGTTGCTCTGGGA 57.091 40.909 0.00 0.00 0.00 4.37
143 144 5.964958 TTTCTCTAAATTGTTGCTCTGGG 57.035 39.130 0.00 0.00 0.00 4.45
156 157 9.184523 TGGTTCAGTTTCTCAATTTTCTCTAAA 57.815 29.630 0.00 0.00 0.00 1.85
157 158 8.746052 TGGTTCAGTTTCTCAATTTTCTCTAA 57.254 30.769 0.00 0.00 0.00 2.10
158 159 8.924511 ATGGTTCAGTTTCTCAATTTTCTCTA 57.075 30.769 0.00 0.00 0.00 2.43
159 160 7.830099 ATGGTTCAGTTTCTCAATTTTCTCT 57.170 32.000 0.00 0.00 0.00 3.10
160 161 7.324616 CGAATGGTTCAGTTTCTCAATTTTCTC 59.675 37.037 0.00 0.00 0.00 2.87
161 162 7.141363 CGAATGGTTCAGTTTCTCAATTTTCT 58.859 34.615 0.00 0.00 0.00 2.52
162 163 6.363357 CCGAATGGTTCAGTTTCTCAATTTTC 59.637 38.462 0.00 0.00 0.00 2.29
163 164 6.215845 CCGAATGGTTCAGTTTCTCAATTTT 58.784 36.000 0.00 0.00 0.00 1.82
164 165 5.772521 CCGAATGGTTCAGTTTCTCAATTT 58.227 37.500 0.00 0.00 0.00 1.82
165 166 5.376854 CCGAATGGTTCAGTTTCTCAATT 57.623 39.130 0.00 0.00 0.00 2.32
180 181 0.684153 AAGGCATTGGGACCGAATGG 60.684 55.000 25.27 11.27 42.84 3.16
181 182 2.051334 TAAGGCATTGGGACCGAATG 57.949 50.000 21.43 21.43 34.47 2.67
182 183 2.443255 AGATAAGGCATTGGGACCGAAT 59.557 45.455 0.00 0.00 0.00 3.34
183 184 1.843851 AGATAAGGCATTGGGACCGAA 59.156 47.619 0.00 0.00 0.00 4.30
184 185 1.140852 CAGATAAGGCATTGGGACCGA 59.859 52.381 0.00 0.00 0.00 4.69
185 186 1.134098 ACAGATAAGGCATTGGGACCG 60.134 52.381 0.00 0.00 0.00 4.79
186 187 2.736670 ACAGATAAGGCATTGGGACC 57.263 50.000 0.00 0.00 0.00 4.46
187 188 4.747810 CAAAACAGATAAGGCATTGGGAC 58.252 43.478 0.00 0.00 0.00 4.46
188 189 3.195396 GCAAAACAGATAAGGCATTGGGA 59.805 43.478 0.00 0.00 0.00 4.37
189 190 3.524541 GCAAAACAGATAAGGCATTGGG 58.475 45.455 0.00 0.00 0.00 4.12
190 191 3.055963 TGGCAAAACAGATAAGGCATTGG 60.056 43.478 0.00 0.00 0.00 3.16
191 192 3.928375 GTGGCAAAACAGATAAGGCATTG 59.072 43.478 0.00 0.00 37.12 2.82
192 193 3.055891 GGTGGCAAAACAGATAAGGCATT 60.056 43.478 0.00 0.00 37.12 3.56
193 194 2.497273 GGTGGCAAAACAGATAAGGCAT 59.503 45.455 0.00 0.00 37.12 4.40
194 195 1.892474 GGTGGCAAAACAGATAAGGCA 59.108 47.619 0.00 0.00 0.00 4.75
195 196 1.892474 TGGTGGCAAAACAGATAAGGC 59.108 47.619 0.00 0.00 0.00 4.35
196 197 2.095263 CGTGGTGGCAAAACAGATAAGG 60.095 50.000 0.00 0.00 0.00 2.69
197 198 2.552315 ACGTGGTGGCAAAACAGATAAG 59.448 45.455 0.00 0.00 0.00 1.73
198 199 2.292016 CACGTGGTGGCAAAACAGATAA 59.708 45.455 7.95 0.00 0.00 1.75
199 200 1.876799 CACGTGGTGGCAAAACAGATA 59.123 47.619 7.95 0.00 0.00 1.98
200 201 0.667993 CACGTGGTGGCAAAACAGAT 59.332 50.000 7.95 0.00 0.00 2.90
201 202 0.678366 ACACGTGGTGGCAAAACAGA 60.678 50.000 21.57 0.00 37.94 3.41
202 203 0.248458 GACACGTGGTGGCAAAACAG 60.248 55.000 21.57 0.00 41.94 3.16
203 204 1.803943 GACACGTGGTGGCAAAACA 59.196 52.632 21.57 0.00 41.94 2.83
204 205 1.298041 CGACACGTGGTGGCAAAAC 60.298 57.895 21.57 0.00 42.59 2.43
205 206 1.306642 AACGACACGTGGTGGCAAAA 61.307 50.000 21.57 0.00 42.59 2.44
206 207 1.745864 AACGACACGTGGTGGCAAA 60.746 52.632 21.57 0.00 42.59 3.68
207 208 2.125065 AACGACACGTGGTGGCAA 60.125 55.556 21.57 0.00 42.59 4.52
208 209 2.892914 CAACGACACGTGGTGGCA 60.893 61.111 21.57 0.00 42.59 4.92
209 210 2.893404 ACAACGACACGTGGTGGC 60.893 61.111 21.57 5.24 42.81 5.01
212 213 2.171079 CAGCACAACGACACGTGGT 61.171 57.895 21.57 6.02 45.53 4.16
213 214 2.625906 CAGCACAACGACACGTGG 59.374 61.111 21.57 5.28 39.99 4.94
214 215 1.212455 TAGCAGCACAACGACACGTG 61.212 55.000 15.48 15.48 39.99 4.49
215 216 0.528901 TTAGCAGCACAACGACACGT 60.529 50.000 0.00 0.00 43.97 4.49
216 217 0.579630 TTTAGCAGCACAACGACACG 59.420 50.000 0.00 0.00 0.00 4.49
217 218 1.329292 TGTTTAGCAGCACAACGACAC 59.671 47.619 0.00 0.00 0.00 3.67
218 219 1.657822 TGTTTAGCAGCACAACGACA 58.342 45.000 0.00 0.00 0.00 4.35
219 220 2.748461 TTGTTTAGCAGCACAACGAC 57.252 45.000 0.00 0.00 0.00 4.34
220 221 2.875317 TGATTGTTTAGCAGCACAACGA 59.125 40.909 0.00 0.00 35.75 3.85
221 222 3.266541 TGATTGTTTAGCAGCACAACG 57.733 42.857 0.00 0.00 35.75 4.10
222 223 6.473455 GGAATATGATTGTTTAGCAGCACAAC 59.527 38.462 0.00 0.00 35.75 3.32
223 224 6.405731 GGGAATATGATTGTTTAGCAGCACAA 60.406 38.462 0.00 0.00 37.31 3.33
224 225 5.067674 GGGAATATGATTGTTTAGCAGCACA 59.932 40.000 0.00 0.00 0.00 4.57
225 226 5.507985 GGGGAATATGATTGTTTAGCAGCAC 60.508 44.000 0.00 0.00 0.00 4.40
226 227 4.584325 GGGGAATATGATTGTTTAGCAGCA 59.416 41.667 0.00 0.00 0.00 4.41
227 228 4.829492 AGGGGAATATGATTGTTTAGCAGC 59.171 41.667 0.00 0.00 0.00 5.25
228 229 5.180117 CGAGGGGAATATGATTGTTTAGCAG 59.820 44.000 0.00 0.00 0.00 4.24
229 230 5.063204 CGAGGGGAATATGATTGTTTAGCA 58.937 41.667 0.00 0.00 0.00 3.49
230 231 5.305585 TCGAGGGGAATATGATTGTTTAGC 58.694 41.667 0.00 0.00 0.00 3.09
231 232 6.759272 TCTCGAGGGGAATATGATTGTTTAG 58.241 40.000 13.56 0.00 0.00 1.85
232 233 6.239600 CCTCTCGAGGGGAATATGATTGTTTA 60.240 42.308 28.44 0.00 44.87 2.01
233 234 5.455326 CCTCTCGAGGGGAATATGATTGTTT 60.455 44.000 28.44 0.00 44.87 2.83
234 235 4.040952 CCTCTCGAGGGGAATATGATTGTT 59.959 45.833 28.44 0.00 44.87 2.83
235 236 3.580458 CCTCTCGAGGGGAATATGATTGT 59.420 47.826 28.44 0.00 44.87 2.71
236 237 4.199432 CCTCTCGAGGGGAATATGATTG 57.801 50.000 28.44 0.00 44.87 2.67
249 250 8.786826 AATATCATCTAGTACTTCCTCTCGAG 57.213 38.462 5.93 5.93 0.00 4.04
250 251 8.376270 TGAATATCATCTAGTACTTCCTCTCGA 58.624 37.037 0.00 0.00 0.00 4.04
251 252 8.554835 TGAATATCATCTAGTACTTCCTCTCG 57.445 38.462 0.00 0.00 0.00 4.04
256 257 9.364989 GCTCATTGAATATCATCTAGTACTTCC 57.635 37.037 0.00 0.00 0.00 3.46
257 258 9.920133 TGCTCATTGAATATCATCTAGTACTTC 57.080 33.333 0.00 0.00 0.00 3.01
258 259 9.926158 CTGCTCATTGAATATCATCTAGTACTT 57.074 33.333 0.00 0.00 0.00 2.24
259 260 8.034215 GCTGCTCATTGAATATCATCTAGTACT 58.966 37.037 0.00 0.00 0.00 2.73
260 261 7.816513 TGCTGCTCATTGAATATCATCTAGTAC 59.183 37.037 0.00 0.00 0.00 2.73
261 262 7.899973 TGCTGCTCATTGAATATCATCTAGTA 58.100 34.615 0.00 0.00 0.00 1.82
262 263 6.766429 TGCTGCTCATTGAATATCATCTAGT 58.234 36.000 0.00 0.00 0.00 2.57
263 264 7.549488 TGATGCTGCTCATTGAATATCATCTAG 59.451 37.037 0.00 0.00 35.05 2.43
264 265 7.333672 GTGATGCTGCTCATTGAATATCATCTA 59.666 37.037 0.00 4.81 35.05 1.98
277 278 1.676746 GTCCATGTGATGCTGCTCAT 58.323 50.000 0.00 0.00 38.32 2.90
316 317 2.349886 GCCTCACTGCAGTAAATTCTCG 59.650 50.000 21.20 4.48 0.00 4.04
367 368 8.921205 GGTACAGAGGTAGTATTAGAAATGGAA 58.079 37.037 0.00 0.00 0.00 3.53
387 388 7.903431 GCAGAAACGTCTTATATTTTGGTACAG 59.097 37.037 0.00 0.00 32.17 2.74
415 416 3.710326 AAAAGAAGAAACCGAACAGCC 57.290 42.857 0.00 0.00 0.00 4.85
438 441 2.864343 AGAGAAACCGTGTCAAAACTCG 59.136 45.455 0.00 0.00 40.97 4.18
442 445 3.013921 AGCAAGAGAAACCGTGTCAAAA 58.986 40.909 0.00 0.00 0.00 2.44
449 452 2.919228 ACTTTGAGCAAGAGAAACCGT 58.081 42.857 0.00 0.00 36.21 4.83
452 455 3.495001 ACGCTACTTTGAGCAAGAGAAAC 59.505 43.478 0.00 0.00 42.99 2.78
471 474 1.334960 CCAGACCAATGAAACACACGC 60.335 52.381 0.00 0.00 0.00 5.34
472 475 1.946768 ACCAGACCAATGAAACACACG 59.053 47.619 0.00 0.00 0.00 4.49
497 500 0.603065 GGCGCCCTTTCAAATCTTGT 59.397 50.000 18.11 0.00 0.00 3.16
522 525 0.901580 AGGATGCCAACTTGCCAAGG 60.902 55.000 9.64 0.00 0.00 3.61
543 546 1.924524 CCAAGTATTGTACAGCCGTCG 59.075 52.381 0.00 0.00 46.99 5.12
576 579 4.508662 CAAGTATTTCTCGAGCTTCCCTT 58.491 43.478 7.81 4.23 0.00 3.95
577 580 3.118592 CCAAGTATTTCTCGAGCTTCCCT 60.119 47.826 7.81 0.00 0.00 4.20
578 581 3.198872 CCAAGTATTTCTCGAGCTTCCC 58.801 50.000 7.81 0.00 0.00 3.97
579 582 2.609916 GCCAAGTATTTCTCGAGCTTCC 59.390 50.000 7.81 0.00 0.00 3.46
580 583 2.609916 GGCCAAGTATTTCTCGAGCTTC 59.390 50.000 7.81 0.00 0.00 3.86
581 584 2.027192 TGGCCAAGTATTTCTCGAGCTT 60.027 45.455 0.61 1.68 0.00 3.74
582 585 1.555075 TGGCCAAGTATTTCTCGAGCT 59.445 47.619 0.61 0.00 0.00 4.09
583 586 2.024176 TGGCCAAGTATTTCTCGAGC 57.976 50.000 0.61 0.00 0.00 5.03
584 587 3.134458 GGATGGCCAAGTATTTCTCGAG 58.866 50.000 10.96 5.93 0.00 4.04
585 588 2.771943 AGGATGGCCAAGTATTTCTCGA 59.228 45.455 10.96 0.00 36.29 4.04
586 589 2.874701 CAGGATGGCCAAGTATTTCTCG 59.125 50.000 10.96 0.00 36.29 4.04
587 590 2.620585 GCAGGATGGCCAAGTATTTCTC 59.379 50.000 10.96 0.00 35.86 2.87
588 591 2.659428 GCAGGATGGCCAAGTATTTCT 58.341 47.619 10.96 0.00 35.86 2.52
600 603 3.207669 GCAGAAGCGGCAGGATGG 61.208 66.667 1.45 0.00 35.86 3.51
609 612 1.715862 ATGCATGCAGAGCAGAAGCG 61.716 55.000 26.69 0.00 46.36 4.68
610 613 0.029567 GATGCATGCAGAGCAGAAGC 59.970 55.000 26.69 0.00 46.36 3.86
611 614 1.669604 AGATGCATGCAGAGCAGAAG 58.330 50.000 26.69 0.00 46.36 2.85
703 706 4.778534 AGGATGTCTTTGCACATTTCAG 57.221 40.909 0.00 0.00 37.11 3.02
704 707 4.154015 CGTAGGATGTCTTTGCACATTTCA 59.846 41.667 0.00 0.00 37.11 2.69
730 733 1.806623 CGGAGGGAAGAAACGCATAGG 60.807 57.143 0.00 0.00 0.00 2.57
760 763 3.670627 GCACAAGTTATTCCAAGGAAGCG 60.671 47.826 7.69 0.00 37.56 4.68
766 778 5.168569 TCGACTAGCACAAGTTATTCCAAG 58.831 41.667 0.00 0.00 0.00 3.61
781 793 2.159170 AGGAGAAAGCACATCGACTAGC 60.159 50.000 0.00 0.00 0.00 3.42
783 795 2.427453 GGAGGAGAAAGCACATCGACTA 59.573 50.000 0.00 0.00 0.00 2.59
784 796 1.205893 GGAGGAGAAAGCACATCGACT 59.794 52.381 0.00 0.00 0.00 4.18
786 798 0.537188 GGGAGGAGAAAGCACATCGA 59.463 55.000 0.00 0.00 0.00 3.59
828 840 0.700564 AACTGGACATGGCTGGACAT 59.299 50.000 0.00 0.00 0.00 3.06
829 841 0.250858 CAACTGGACATGGCTGGACA 60.251 55.000 0.00 0.00 0.00 4.02
830 842 0.250901 ACAACTGGACATGGCTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
831 843 0.036732 GACAACTGGACATGGCTGGA 59.963 55.000 0.00 0.00 0.00 3.86
832 844 0.962356 GGACAACTGGACATGGCTGG 60.962 60.000 0.00 0.00 0.00 4.85
833 845 0.250858 TGGACAACTGGACATGGCTG 60.251 55.000 0.00 0.00 0.00 4.85
834 846 0.250901 GTGGACAACTGGACATGGCT 60.251 55.000 0.00 0.00 0.00 4.75
835 847 0.537143 TGTGGACAACTGGACATGGC 60.537 55.000 0.00 0.00 0.00 4.40
836 848 1.238439 GTGTGGACAACTGGACATGG 58.762 55.000 0.00 0.00 0.00 3.66
936 959 4.134563 GGAAAGGAAAGTAAGCTGTGTGA 58.865 43.478 0.00 0.00 0.00 3.58
951 975 5.576563 TCAAGAACTATGTTGGGAAAGGA 57.423 39.130 0.00 0.00 31.03 3.36
973 997 0.179018 GACTCACCACCAGGCTTGTT 60.179 55.000 0.00 0.00 39.06 2.83
974 998 1.451936 GACTCACCACCAGGCTTGT 59.548 57.895 0.00 0.00 39.06 3.16
976 1000 2.529744 GGGACTCACCACCAGGCTT 61.530 63.158 0.00 0.00 41.20 4.35
1240 1292 7.695201 GGTGAATACTAAAGCGAAATAACAACC 59.305 37.037 0.00 0.00 0.00 3.77
1257 1309 4.702131 GCAGAAGTGAATTGGGTGAATACT 59.298 41.667 0.00 0.00 0.00 2.12
1258 1310 4.142381 GGCAGAAGTGAATTGGGTGAATAC 60.142 45.833 0.00 0.00 0.00 1.89
1259 1311 4.016444 GGCAGAAGTGAATTGGGTGAATA 58.984 43.478 0.00 0.00 0.00 1.75
1261 1313 2.238521 GGCAGAAGTGAATTGGGTGAA 58.761 47.619 0.00 0.00 0.00 3.18
1263 1315 0.523072 CGGCAGAAGTGAATTGGGTG 59.477 55.000 0.00 0.00 0.00 4.61
1284 1336 9.959721 TTCCTTCTATCAAACTTTAGCTATTGT 57.040 29.630 0.00 0.00 0.00 2.71
1288 1340 8.375493 TCCTTCCTTCTATCAAACTTTAGCTA 57.625 34.615 0.00 0.00 0.00 3.32
1289 1341 7.181125 TCTCCTTCCTTCTATCAAACTTTAGCT 59.819 37.037 0.00 0.00 0.00 3.32
1290 1342 7.331791 TCTCCTTCCTTCTATCAAACTTTAGC 58.668 38.462 0.00 0.00 0.00 3.09
1291 1343 7.494298 GCTCTCCTTCCTTCTATCAAACTTTAG 59.506 40.741 0.00 0.00 0.00 1.85
1293 1345 6.012945 AGCTCTCCTTCCTTCTATCAAACTTT 60.013 38.462 0.00 0.00 0.00 2.66
1322 1378 7.145932 AGCATAACAAGGACACAATACTTTC 57.854 36.000 0.00 0.00 0.00 2.62
1326 1382 4.494199 GCGAGCATAACAAGGACACAATAC 60.494 45.833 0.00 0.00 0.00 1.89
1328 1384 2.420022 GCGAGCATAACAAGGACACAAT 59.580 45.455 0.00 0.00 0.00 2.71
1331 1388 1.394917 CTGCGAGCATAACAAGGACAC 59.605 52.381 0.00 0.00 0.00 3.67
1333 1390 1.009829 CCTGCGAGCATAACAAGGAC 58.990 55.000 0.00 0.00 0.00 3.85
1336 1393 1.063174 GCTTCCTGCGAGCATAACAAG 59.937 52.381 0.00 0.40 39.89 3.16
1519 1578 6.535865 CCATCTGAAGCTTAGATCATATCAGC 59.464 42.308 0.00 0.00 32.75 4.26
1560 1624 6.330278 TCAGTTTCACACCTACATAGAATCG 58.670 40.000 0.00 0.00 0.00 3.34
1596 1667 4.502950 GCCCTGGAATTCACATGAACAAAA 60.503 41.667 7.93 0.00 36.80 2.44
1613 1684 0.967380 GTTGTCATCCTTGGCCCTGG 60.967 60.000 0.00 1.75 0.00 4.45
1883 1962 6.128282 CGTTAACCATCAGCTTCTGTATGTTT 60.128 38.462 0.00 0.00 32.61 2.83
1889 1968 3.244078 TGTCGTTAACCATCAGCTTCTGT 60.244 43.478 0.00 0.00 32.61 3.41
1928 2007 0.238289 GCAGCGCTGTTTGAAGCTTA 59.762 50.000 35.80 0.00 41.24 3.09
1937 2016 3.360340 GCAAGGAGCAGCGCTGTT 61.360 61.111 35.80 32.03 44.79 3.16
2230 2321 9.126151 TGGATAGAGAACACAACAATGTTAAAA 57.874 29.630 0.00 0.00 42.89 1.52
2245 2336 5.297029 GCCAAAGTAACCATGGATAGAGAAC 59.703 44.000 21.47 0.62 36.27 3.01
2501 2609 1.802960 CAGGAATGGCTATGATCACGC 59.197 52.381 0.00 3.65 0.00 5.34
2603 2712 4.021807 TCGAGCTCCACATTACACTTTGTA 60.022 41.667 8.47 0.00 0.00 2.41
2820 3313 3.836949 TCCTGAAATTGCATCGCTTTTC 58.163 40.909 0.00 0.00 34.50 2.29
2824 3317 1.066605 GCATCCTGAAATTGCATCGCT 59.933 47.619 0.00 0.00 36.40 4.93
2933 3426 1.336887 TGTGACTCCTAGTTTGCTCGC 60.337 52.381 0.00 0.00 0.00 5.03
3156 3651 5.420725 AGTCAGTAGTGTTCATGGCAATA 57.579 39.130 0.00 0.00 0.00 1.90
3697 4261 1.072331 TCCCTGACCTTCTTGTTCTGC 59.928 52.381 0.00 0.00 0.00 4.26
3787 4366 5.970317 AATTGTGCATCTTGTTGATCTCA 57.030 34.783 0.00 0.00 32.05 3.27
3829 4408 0.984230 TCCAGCGGATCTGTCCTTTT 59.016 50.000 2.89 0.00 42.73 2.27
3945 4524 8.837788 ATATTGTTCATGATCGAGCAATTAGA 57.162 30.769 7.76 0.58 42.13 2.10
4079 5323 4.399303 ACTGTTAGCCCAAATGCTTCATAC 59.601 41.667 0.00 0.00 42.75 2.39
4347 7186 1.005394 GGCGAAAGGAAGACGACCA 60.005 57.895 0.00 0.00 0.00 4.02
4348 7187 1.014564 CAGGCGAAAGGAAGACGACC 61.015 60.000 0.00 0.00 35.51 4.79
4349 7188 1.014564 CCAGGCGAAAGGAAGACGAC 61.015 60.000 0.00 0.00 35.11 4.34
4351 7190 0.245539 TACCAGGCGAAAGGAAGACG 59.754 55.000 0.00 0.00 0.00 4.18
4360 7209 4.467082 TGGTTAGTATTCTTACCAGGCGAA 59.533 41.667 6.16 0.00 44.89 4.70
4556 7419 3.154710 CATTGGCCACTGCATCAGATAT 58.845 45.455 3.88 0.00 40.13 1.63
4597 7461 7.501559 CCTGAAAGACAAGATGATATTGGTCAT 59.498 37.037 4.71 0.00 37.62 3.06
4614 7502 2.405172 GACGGTCTTCACCTGAAAGAC 58.595 52.381 0.00 7.34 41.17 3.01
4884 7805 9.087424 TCACTCGATTGTTCTACAGATAATTTG 57.913 33.333 2.44 0.00 0.00 2.32
4904 7825 4.169508 CAAAGGTCAGTACTCATCACTCG 58.830 47.826 0.00 0.00 0.00 4.18
4929 7886 2.277969 GTCATCATCCTGAGCACACAG 58.722 52.381 0.00 0.00 37.61 3.66
5056 8020 3.244078 ACACCAATCACGTCACACTATGT 60.244 43.478 0.00 0.00 0.00 2.29
5067 8031 1.885887 ACAAATCCCACACCAATCACG 59.114 47.619 0.00 0.00 0.00 4.35
5185 8153 6.602179 TCAGCGTAGAACAAATCTTCAATTG 58.398 36.000 0.00 0.00 39.71 2.32
5186 8154 6.650807 TCTCAGCGTAGAACAAATCTTCAATT 59.349 34.615 0.00 0.00 39.71 2.32
5241 8209 8.378421 GCAATTTGAGATCTCATTTAAGTTTGC 58.622 33.333 25.64 22.36 39.64 3.68
5286 8254 3.804329 GGGGTGCTTATGCGGGGA 61.804 66.667 0.00 0.00 43.34 4.81
5293 8261 3.078837 CGTTGTAAGTTGGGGTGCTTAT 58.921 45.455 0.00 0.00 31.02 1.73
5490 8462 8.960591 CCATCTGAACTTAAAGTATGGTGAAAT 58.039 33.333 0.00 0.00 0.00 2.17
5505 8477 3.726557 TCCTTGCATCCATCTGAACTT 57.273 42.857 0.00 0.00 0.00 2.66
5506 8478 3.350833 GTTCCTTGCATCCATCTGAACT 58.649 45.455 0.00 0.00 0.00 3.01
5551 8523 1.681264 ACCCTTGCAGTTTTGTACAGC 59.319 47.619 0.00 0.00 39.52 4.40
5568 8540 3.489355 TCATGTGATGCATTATGGACCC 58.511 45.455 0.00 0.00 35.19 4.46
5576 8548 5.833667 AGAGATTGGAATCATGTGATGCATT 59.166 36.000 0.00 0.00 37.89 3.56
5647 8641 4.329545 GGTGGTTGAGAGGCGGCA 62.330 66.667 13.08 0.00 0.00 5.69
5694 8689 0.818040 GGCGGCGGGATAGAAAATGT 60.818 55.000 9.78 0.00 0.00 2.71
5725 8720 8.230472 ACAAATCCTTCCTGAAATATGTCATC 57.770 34.615 0.00 0.00 0.00 2.92
5730 8725 9.362539 CTGAAAACAAATCCTTCCTGAAATATG 57.637 33.333 0.00 0.00 0.00 1.78
5783 8778 0.247460 TGGTACTACTGCTGCTGCTG 59.753 55.000 18.66 18.66 42.70 4.41
5795 8790 6.127703 GCACTTGAGATTACACTCTGGTACTA 60.128 42.308 0.00 0.00 37.73 1.82
5827 8824 7.818997 AAGTAGTAATGGTGATGTATCGAGA 57.181 36.000 0.00 0.00 0.00 4.04
5834 8831 5.488341 AGCGAAAAGTAGTAATGGTGATGT 58.512 37.500 0.00 0.00 0.00 3.06
5906 8903 7.707624 TGATTATGCCATTTTCTTCTGTCTT 57.292 32.000 0.00 0.00 0.00 3.01
5971 8968 5.508280 TGTACTTAGTTATGTTTGGGGCT 57.492 39.130 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.