Multiple sequence alignment - TraesCS2D01G403500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G403500 chr2D 100.000 7494 0 0 1 7494 518257837 518265330 0.000000e+00 13839.0
1 TraesCS2D01G403500 chr2D 81.905 525 71 21 1 511 608194492 608195006 8.990000e-114 422.0
2 TraesCS2D01G403500 chr2D 82.785 395 61 4 5620 6014 313718016 313718403 5.570000e-91 346.0
3 TraesCS2D01G403500 chr2D 94.355 124 7 0 5620 5743 478981850 478981727 2.760000e-44 191.0
4 TraesCS2D01G403500 chr2D 90.789 76 7 0 5547 5622 326789193 326789268 1.330000e-17 102.0
5 TraesCS2D01G403500 chr2D 95.238 63 3 0 6177 6239 326789258 326789196 4.780000e-17 100.0
6 TraesCS2D01G403500 chr2D 94.030 67 3 1 6174 6239 518263452 518263386 4.780000e-17 100.0
7 TraesCS2D01G403500 chr2D 94.030 67 3 1 5550 5616 518264075 518264010 4.780000e-17 100.0
8 TraesCS2D01G403500 chr2B 95.035 4673 158 33 904 5539 610409960 610414595 0.000000e+00 7276.0
9 TraesCS2D01G403500 chr2B 91.269 607 42 5 6239 6842 610414600 610415198 0.000000e+00 817.0
10 TraesCS2D01G403500 chr2B 81.549 607 84 24 19 611 495815980 495815388 6.800000e-130 475.0
11 TraesCS2D01G403500 chr2B 90.385 312 15 5 7185 7494 610415539 610415837 5.450000e-106 396.0
12 TraesCS2D01G403500 chr2B 89.457 313 29 3 6859 7169 610415249 610415559 7.050000e-105 392.0
13 TraesCS2D01G403500 chr2B 80.986 426 61 13 457 875 610409547 610409959 3.370000e-83 320.0
14 TraesCS2D01G403500 chr2B 92.810 153 11 0 6027 6179 418952154 418952002 9.790000e-54 222.0
15 TraesCS2D01G403500 chr2B 94.891 137 5 2 5613 5749 418952435 418952301 5.890000e-51 213.0
16 TraesCS2D01G403500 chr2B 74.945 455 77 28 344 783 569014451 569014883 2.780000e-39 174.0
17 TraesCS2D01G403500 chr2B 75.658 304 49 21 456 748 96083732 96084021 2.190000e-25 128.0
18 TraesCS2D01G403500 chr2B 91.304 46 3 1 6963 7007 779848238 779848283 2.260000e-05 62.1
19 TraesCS2D01G403500 chr2A 95.588 4125 123 36 1461 5539 662333160 662337271 0.000000e+00 6554.0
20 TraesCS2D01G403500 chr2A 86.463 1049 96 32 413 1436 662332136 662333163 0.000000e+00 1109.0
21 TraesCS2D01G403500 chr2A 83.527 601 56 12 6360 6944 662337314 662337887 8.620000e-144 521.0
22 TraesCS2D01G403500 chr2A 81.625 517 71 18 21 530 739707801 739708300 2.520000e-109 407.0
23 TraesCS2D01G403500 chr2A 78.549 634 107 26 1 618 565454997 565455617 2.540000e-104 390.0
24 TraesCS2D01G403500 chr2A 89.865 296 17 9 7208 7494 662338199 662338490 1.190000e-97 368.0
25 TraesCS2D01G403500 chr2A 75.132 378 65 24 463 825 91143793 91144156 4.680000e-32 150.0
26 TraesCS2D01G403500 chr2A 88.312 77 9 0 5544 5620 113025132 113025208 8.010000e-15 93.5
27 TraesCS2D01G403500 chr7D 89.864 513 45 5 5620 6129 586356865 586357373 0.000000e+00 652.0
28 TraesCS2D01G403500 chr7D 88.272 486 43 9 5655 6129 423011542 423011060 3.030000e-158 569.0
29 TraesCS2D01G403500 chr7D 78.269 543 90 24 4 531 422591722 422591193 2.610000e-84 324.0
30 TraesCS2D01G403500 chr7D 77.525 396 65 19 457 837 625556235 625556621 4.550000e-52 217.0
31 TraesCS2D01G403500 chr7D 91.781 73 4 2 5551 5622 568904810 568904881 4.780000e-17 100.0
32 TraesCS2D01G403500 chr7D 93.651 63 4 0 6177 6239 315381219 315381157 2.230000e-15 95.3
33 TraesCS2D01G403500 chr7D 90.411 73 4 2 5550 5622 609273684 609273615 8.010000e-15 93.5
34 TraesCS2D01G403500 chr5B 97.377 305 8 0 5737 6041 382259078 382259382 3.100000e-143 520.0
35 TraesCS2D01G403500 chr5B 91.304 46 4 0 6970 7015 320410398 320410353 6.280000e-06 63.9
36 TraesCS2D01G403500 chr5B 87.037 54 6 1 6960 7012 318995489 318995436 8.120000e-05 60.2
37 TraesCS2D01G403500 chr3B 97.973 296 6 0 5740 6035 783126776 783126481 1.440000e-141 514.0
38 TraesCS2D01G403500 chr3B 80.810 469 75 15 119 581 17565150 17564691 3.330000e-93 353.0
39 TraesCS2D01G403500 chr3B 94.521 146 8 0 6034 6179 370152110 370151965 7.570000e-55 226.0
40 TraesCS2D01G403500 chr3B 92.466 146 11 0 6034 6179 204170000 204170145 7.620000e-50 209.0
41 TraesCS2D01G403500 chr3B 96.721 122 4 0 5622 5743 370152228 370152107 3.540000e-48 204.0
42 TraesCS2D01G403500 chr4D 95.873 315 13 0 5737 6051 27567423 27567109 1.870000e-140 510.0
43 TraesCS2D01G403500 chr4D 92.053 151 10 1 6031 6179 198459131 198458981 2.120000e-50 211.0
44 TraesCS2D01G403500 chr4D 76.425 386 78 11 457 832 506941469 506941851 5.930000e-46 196.0
45 TraesCS2D01G403500 chr4D 94.355 124 7 0 5620 5743 87090084 87090207 2.760000e-44 191.0
46 TraesCS2D01G403500 chr4D 93.750 64 4 0 6176 6239 420602329 420602266 6.190000e-16 97.1
47 TraesCS2D01G403500 chr4D 93.651 63 4 0 6177 6239 302911255 302911317 2.230000e-15 95.3
48 TraesCS2D01G403500 chr4D 88.312 77 9 0 5544 5620 302911323 302911247 8.010000e-15 93.5
49 TraesCS2D01G403500 chr4D 88.235 68 6 2 6185 6252 325363765 325363700 6.230000e-11 80.5
50 TraesCS2D01G403500 chr4D 96.970 33 1 0 6971 7003 68709315 68709283 1.000000e-03 56.5
51 TraesCS2D01G403500 chr7B 97.324 299 8 0 5740 6038 74202718 74203016 6.710000e-140 508.0
52 TraesCS2D01G403500 chr7B 96.393 305 9 2 5737 6041 605960583 605960885 1.120000e-137 501.0
53 TraesCS2D01G403500 chr7B 74.759 622 103 40 141 748 730375910 730375329 5.850000e-56 230.0
54 TraesCS2D01G403500 chr7B 82.692 208 29 6 1 202 684933352 684933558 2.150000e-40 178.0
55 TraesCS2D01G403500 chr7B 76.829 246 44 13 5 244 544440081 544440319 7.890000e-25 126.0
56 TraesCS2D01G403500 chr7B 78.173 197 33 9 6 198 599883162 599883352 4.750000e-22 117.0
57 TraesCS2D01G403500 chr7B 89.474 57 6 0 4 60 115200328 115200272 1.040000e-08 73.1
58 TraesCS2D01G403500 chr6D 87.196 453 48 6 5717 6164 363148189 363147742 2.410000e-139 507.0
59 TraesCS2D01G403500 chr6D 79.482 502 81 19 26 514 109401757 109401265 3.350000e-88 337.0
60 TraesCS2D01G403500 chr6D 75.147 511 90 27 344 835 426995924 426995432 9.860000e-49 206.0
61 TraesCS2D01G403500 chr6D 95.833 120 5 0 5624 5743 125088448 125088329 2.130000e-45 195.0
62 TraesCS2D01G403500 chr6D 90.909 77 4 3 5548 5622 408695291 408695366 4.780000e-17 100.0
63 TraesCS2D01G403500 chr6D 93.651 63 4 0 6177 6239 207229245 207229183 2.230000e-15 95.3
64 TraesCS2D01G403500 chr6D 93.651 63 4 0 6177 6239 215743866 215743804 2.230000e-15 95.3
65 TraesCS2D01G403500 chr6D 92.982 57 4 0 6186 6242 81421362 81421306 4.820000e-12 84.2
66 TraesCS2D01G403500 chr6D 92.982 57 4 0 6186 6242 82858452 82858396 4.820000e-12 84.2
67 TraesCS2D01G403500 chr6D 91.667 60 5 0 6180 6239 136888230 136888289 4.820000e-12 84.2
68 TraesCS2D01G403500 chr6D 87.838 74 6 2 6174 6244 156740924 156740851 4.820000e-12 84.2
69 TraesCS2D01G403500 chr6D 92.982 57 4 0 6186 6242 242010761 242010705 4.820000e-12 84.2
70 TraesCS2D01G403500 chr6D 94.444 54 3 0 6186 6239 274841182 274841129 4.820000e-12 84.2
71 TraesCS2D01G403500 chr6D 92.982 57 4 0 6186 6242 313838498 313838442 4.820000e-12 84.2
72 TraesCS2D01G403500 chr6D 92.982 57 4 0 6186 6242 358894996 358894940 4.820000e-12 84.2
73 TraesCS2D01G403500 chr6D 90.476 63 5 1 6177 6239 131133737 131133798 1.730000e-11 82.4
74 TraesCS2D01G403500 chr6D 95.000 40 2 0 6973 7012 389976876 389976915 6.280000e-06 63.9
75 TraesCS2D01G403500 chr6D 92.857 42 3 0 6969 7010 451854831 451854872 2.260000e-05 62.1
76 TraesCS2D01G403500 chr6D 90.909 44 3 1 6973 7015 330111495 330111452 2.920000e-04 58.4
77 TraesCS2D01G403500 chr1B 97.306 297 8 0 5739 6035 26641862 26642158 8.680000e-139 505.0
78 TraesCS2D01G403500 chr7A 78.560 639 105 25 1 625 598907373 598907993 7.050000e-105 392.0
79 TraesCS2D01G403500 chr7A 93.939 66 3 1 6174 6238 535803848 535803913 1.720000e-16 99.0
80 TraesCS2D01G403500 chr7A 100.000 32 0 0 6972 7003 505687216 505687247 8.120000e-05 60.2
81 TraesCS2D01G403500 chr5D 79.747 553 79 28 138 673 290753122 290753658 3.300000e-98 370.0
82 TraesCS2D01G403500 chr5D 94.400 125 7 0 5619 5743 253937041 253937165 7.670000e-45 193.0
83 TraesCS2D01G403500 chr5D 89.262 149 13 1 5620 5768 453377885 453377740 4.620000e-42 183.0
84 TraesCS2D01G403500 chr5D 95.000 60 3 0 6180 6239 213185422 213185363 2.230000e-15 95.3
85 TraesCS2D01G403500 chr5D 91.304 46 4 0 6970 7015 282357447 282357402 6.280000e-06 63.9
86 TraesCS2D01G403500 chr3D 94.326 141 8 0 6039 6179 306314465 306314325 4.550000e-52 217.0
87 TraesCS2D01G403500 chr3D 93.651 63 4 0 6177 6239 255480141 255480079 2.230000e-15 95.3
88 TraesCS2D01G403500 chr3D 88.312 77 9 0 5544 5620 255480073 255480149 8.010000e-15 93.5
89 TraesCS2D01G403500 chr1D 93.151 146 9 1 6034 6179 241164527 241164671 5.890000e-51 213.0
90 TraesCS2D01G403500 chr1D 93.651 63 4 0 6177 6239 149023285 149023347 2.230000e-15 95.3
91 TraesCS2D01G403500 chr1D 88.312 77 9 0 5544 5620 149023353 149023277 8.010000e-15 93.5
92 TraesCS2D01G403500 chr1D 88.312 77 9 0 5544 5620 302637604 302637680 8.010000e-15 93.5
93 TraesCS2D01G403500 chr1D 94.737 57 3 0 6183 6239 266972959 266972903 1.040000e-13 89.8
94 TraesCS2D01G403500 chr1D 97.059 34 1 0 6970 7003 138347204 138347237 2.920000e-04 58.4
95 TraesCS2D01G403500 chr1D 97.059 34 1 0 6970 7003 277362519 277362552 2.920000e-04 58.4
96 TraesCS2D01G403500 chr1D 97.143 35 0 1 6970 7003 484022868 484022902 2.920000e-04 58.4
97 TraesCS2D01G403500 chr1D 94.444 36 2 0 6971 7006 101285234 101285199 1.000000e-03 56.5
98 TraesCS2D01G403500 chr3A 84.058 207 26 6 1 202 12342379 12342583 7.670000e-45 193.0
99 TraesCS2D01G403500 chr3A 94.355 124 7 0 5620 5743 379544020 379544143 2.760000e-44 191.0
100 TraesCS2D01G403500 chr3A 94.355 124 7 0 5620 5743 379583093 379583216 2.760000e-44 191.0
101 TraesCS2D01G403500 chr3A 73.834 386 79 17 457 834 533959261 533959632 4.720000e-27 134.0
102 TraesCS2D01G403500 chr5A 77.419 310 57 11 490 793 109960914 109960612 1.000000e-38 172.0
103 TraesCS2D01G403500 chr5A 91.304 46 4 0 6970 7015 374896718 374896673 6.280000e-06 63.9
104 TraesCS2D01G403500 chr6A 75.499 351 60 23 499 830 558630774 558631117 1.680000e-31 148.0
105 TraesCS2D01G403500 chr6A 94.828 58 1 2 6186 6242 451245392 451245336 1.040000e-13 89.8
106 TraesCS2D01G403500 chr6A 92.683 41 3 0 6972 7012 67133250 67133210 8.120000e-05 60.2
107 TraesCS2D01G403500 chr6A 92.500 40 3 0 6973 7012 536257100 536257139 2.920000e-04 58.4
108 TraesCS2D01G403500 chr1A 91.045 67 5 1 6174 6239 14836748 14836682 1.040000e-13 89.8
109 TraesCS2D01G403500 chr1A 97.143 35 1 0 6973 7007 53035464 53035430 8.120000e-05 60.2
110 TraesCS2D01G403500 chr1A 97.059 34 1 0 6974 7007 78548523 78548490 2.920000e-04 58.4
111 TraesCS2D01G403500 chr1A 97.059 34 1 0 6970 7003 154576778 154576811 2.920000e-04 58.4
112 TraesCS2D01G403500 chr1A 97.059 34 1 0 6970 7003 350017095 350017128 2.920000e-04 58.4
113 TraesCS2D01G403500 chrUn 92.727 55 4 0 6185 6239 50779863 50779917 6.230000e-11 80.5
114 TraesCS2D01G403500 chrUn 92.727 55 4 0 6185 6239 93788118 93788172 6.230000e-11 80.5
115 TraesCS2D01G403500 chrUn 91.379 58 5 0 6185 6242 101478657 101478600 6.230000e-11 80.5
116 TraesCS2D01G403500 chrUn 92.727 55 4 0 6185 6239 105081757 105081703 6.230000e-11 80.5
117 TraesCS2D01G403500 chrUn 92.727 55 4 0 6185 6239 360170832 360170886 6.230000e-11 80.5
118 TraesCS2D01G403500 chrUn 92.593 54 4 0 6186 6239 69056466 69056413 2.240000e-10 78.7
119 TraesCS2D01G403500 chrUn 89.831 59 6 0 6185 6243 30101043 30100985 8.060000e-10 76.8
120 TraesCS2D01G403500 chrUn 90.909 55 5 0 6185 6239 21021562 21021616 2.900000e-09 75.0
121 TraesCS2D01G403500 chrUn 89.831 59 4 2 6185 6242 60992851 60992794 2.900000e-09 75.0
122 TraesCS2D01G403500 chrUn 89.655 58 6 0 6185 6242 83275810 83275753 2.900000e-09 75.0
123 TraesCS2D01G403500 chrUn 97.059 34 0 1 6970 7003 134242375 134242343 1.000000e-03 56.5
124 TraesCS2D01G403500 chr4A 92.857 42 3 0 6971 7012 27643612 27643571 2.260000e-05 62.1
125 TraesCS2D01G403500 chr6B 100.000 29 0 0 806 834 195971116 195971144 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G403500 chr2D 518257837 518265330 7493 False 13839.0 13839 100.00000 1 7494 1 chr2D.!!$F3 7493
1 TraesCS2D01G403500 chr2D 608194492 608195006 514 False 422.0 422 81.90500 1 511 1 chr2D.!!$F4 510
2 TraesCS2D01G403500 chr2B 610409547 610415837 6290 False 1840.2 7276 89.42640 457 7494 5 chr2B.!!$F4 7037
3 TraesCS2D01G403500 chr2B 495815388 495815980 592 True 475.0 475 81.54900 19 611 1 chr2B.!!$R1 592
4 TraesCS2D01G403500 chr2A 662332136 662338490 6354 False 2138.0 6554 88.86075 413 7494 4 chr2A.!!$F5 7081
5 TraesCS2D01G403500 chr2A 565454997 565455617 620 False 390.0 390 78.54900 1 618 1 chr2A.!!$F3 617
6 TraesCS2D01G403500 chr7D 586356865 586357373 508 False 652.0 652 89.86400 5620 6129 1 chr7D.!!$F2 509
7 TraesCS2D01G403500 chr7D 422591193 422591722 529 True 324.0 324 78.26900 4 531 1 chr7D.!!$R2 527
8 TraesCS2D01G403500 chr7B 730375329 730375910 581 True 230.0 230 74.75900 141 748 1 chr7B.!!$R2 607
9 TraesCS2D01G403500 chr7A 598907373 598907993 620 False 392.0 392 78.56000 1 625 1 chr7A.!!$F3 624
10 TraesCS2D01G403500 chr5D 290753122 290753658 536 False 370.0 370 79.74700 138 673 1 chr5D.!!$F2 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 980 1.132453 GCCTACCGCAGCCTTTAAAAG 59.868 52.381 0.00 0.0 37.47 2.27 F
1395 1552 0.035317 TGCACTACCTCCTTGCTGTG 59.965 55.000 0.00 0.0 37.16 3.66 F
1788 1967 1.098050 GCTCTCATCCCGTTGCATTT 58.902 50.000 0.00 0.0 0.00 2.32 F
3212 3405 0.618393 ACCCCCAGAAATTGGCCATG 60.618 55.000 6.09 0.0 46.32 3.66 F
4467 4666 0.311790 ACACATTGCCTTGTCTTGCG 59.688 50.000 0.00 0.0 0.00 4.85 F
6138 6348 0.190815 AGCCCACTCCCACCATTTTT 59.809 50.000 0.00 0.0 0.00 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1967 0.183492 AACAGGCAGGTCAGCAGAAA 59.817 50.000 0.00 0.00 35.83 2.52 R
2674 2865 0.814457 CAGTCTCAGACCCTCCTTCG 59.186 60.000 0.00 0.00 32.18 3.79 R
3610 3806 1.072331 AGGTACAGTGTGGCCTCTTTG 59.928 52.381 5.88 5.95 0.00 2.77 R
4737 4938 2.099427 GCTACCTGCCTCAGTACTACAC 59.901 54.545 0.00 0.00 35.15 2.90 R
6180 6390 0.036105 AGCGTGCCATGTCATCAAGA 60.036 50.000 0.00 0.00 0.00 3.02 R
7203 7520 0.029567 GATGCATGCAGAGCAGAAGC 59.970 55.000 26.69 0.00 46.36 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 8.655651 TTTTTGAATACTTGGTCAACATTTCC 57.344 30.769 0.00 0.00 33.58 3.13
75 77 5.975693 TGAATACTTGGTCAACATTTCCC 57.024 39.130 0.00 0.00 0.00 3.97
171 187 8.296713 ACATGGTCAACATTTTTCTATACACAC 58.703 33.333 0.00 0.00 37.84 3.82
331 354 9.625747 ACACATTTAACATTTCCCAAAATTCTT 57.374 25.926 0.00 0.00 32.69 2.52
453 479 7.901874 TGTTCAACAACTTTTCTATAAACGC 57.098 32.000 0.00 0.00 33.17 4.84
574 656 5.793030 TCCAATACCCGTTCAACATTTTT 57.207 34.783 0.00 0.00 0.00 1.94
576 658 5.302059 TCCAATACCCGTTCAACATTTTTCA 59.698 36.000 0.00 0.00 0.00 2.69
597 679 7.425915 TTCAAATACTTGTTCAACGTTTTCG 57.574 32.000 0.00 0.00 40.29 3.46
765 888 4.711949 CTGCCGTGCTTCTGGGCT 62.712 66.667 2.72 0.00 46.97 5.19
766 889 3.315142 CTGCCGTGCTTCTGGGCTA 62.315 63.158 2.72 0.00 46.97 3.93
796 919 4.821589 CTCCCGTTCAGCGAGGGC 62.822 72.222 0.00 0.00 44.70 5.19
853 979 1.170442 GCCTACCGCAGCCTTTAAAA 58.830 50.000 0.00 0.00 37.47 1.52
854 980 1.132453 GCCTACCGCAGCCTTTAAAAG 59.868 52.381 0.00 0.00 37.47 2.27
855 981 2.706890 CCTACCGCAGCCTTTAAAAGA 58.293 47.619 0.00 0.00 0.00 2.52
869 995 7.435192 AGCCTTTAAAAGAGAAAAATGTTGACG 59.565 33.333 0.00 0.00 0.00 4.35
881 1008 2.697431 TGTTGACGTGCTTATTTGGC 57.303 45.000 0.00 0.00 0.00 4.52
914 1041 1.134220 TGAAACAGGTTCGGTTCAGCT 60.134 47.619 0.00 0.00 39.30 4.24
957 1084 2.640302 GCGGTCTCAGTCCTCTGCA 61.640 63.158 0.00 0.00 41.10 4.41
1145 1277 2.367202 TTCGGCTCCTCACCCATCC 61.367 63.158 0.00 0.00 0.00 3.51
1176 1309 2.231235 CCTCAAAATTACGGCAGCCTTT 59.769 45.455 10.54 0.00 0.00 3.11
1180 1313 3.575965 AAATTACGGCAGCCTTTTGAG 57.424 42.857 10.54 0.00 0.00 3.02
1219 1355 5.923114 TCTCGACAGCTTTATAGATTGATGC 59.077 40.000 0.00 0.00 0.00 3.91
1227 1363 7.013083 CAGCTTTATAGATTGATGCTGTTCCTT 59.987 37.037 0.00 0.00 40.75 3.36
1344 1483 1.905637 AACCCCAAATTCAGTCGTCC 58.094 50.000 0.00 0.00 0.00 4.79
1395 1552 0.035317 TGCACTACCTCCTTGCTGTG 59.965 55.000 0.00 0.00 37.16 3.66
1421 1578 5.489792 TCTTTGCTACTGATTCCTCACTT 57.510 39.130 0.00 0.00 0.00 3.16
1432 1589 8.088463 ACTGATTCCTCACTTCTCTCATATTT 57.912 34.615 0.00 0.00 0.00 1.40
1439 1596 8.762645 TCCTCACTTCTCTCATATTTAATGTGT 58.237 33.333 1.85 0.00 0.00 3.72
1562 1719 2.035066 AGTGGTTGATTGTTTGAGCAGC 59.965 45.455 0.00 0.00 0.00 5.25
1585 1747 5.337169 GCTTCGCTAAGATAGATGGGATTCT 60.337 44.000 1.47 0.00 34.37 2.40
1591 1753 7.095439 CGCTAAGATAGATGGGATTCTGAAAAC 60.095 40.741 0.00 0.00 0.00 2.43
1601 1763 3.253432 GGATTCTGAAAACTGTGTCACCC 59.747 47.826 0.00 0.00 0.00 4.61
1649 1818 9.907229 AATTCTTTATGGAACTAGAAGTAAGGG 57.093 33.333 0.00 0.00 30.87 3.95
1695 1871 8.740123 TGTGTTTAAGATAAAGTGAACCAGAA 57.260 30.769 0.00 0.00 0.00 3.02
1740 1917 3.534524 TGTAAACATGTGTGCGATGTG 57.465 42.857 0.00 0.00 34.22 3.21
1777 1956 2.996249 TCTGACCATTGGCTCTCATC 57.004 50.000 1.54 0.00 0.00 2.92
1788 1967 1.098050 GCTCTCATCCCGTTGCATTT 58.902 50.000 0.00 0.00 0.00 2.32
1798 1977 2.053627 CCGTTGCATTTTTCTGCTGAC 58.946 47.619 0.00 0.00 42.75 3.51
1811 1990 1.741706 CTGCTGACCTGCCTGTTAATG 59.258 52.381 0.00 0.00 0.00 1.90
2011 2190 5.242171 TGCTCATGTTTGTCAACAGATGAAT 59.758 36.000 0.00 0.00 46.25 2.57
2043 2222 6.420008 GCTCTATTTGCTTTGGAATATTGCTG 59.580 38.462 8.53 0.50 0.00 4.41
2449 2640 6.739331 AAATTTGGTTTTGGTGGATACTGA 57.261 33.333 0.00 0.00 37.61 3.41
2492 2683 4.202357 TGTCTTACCTGCTCTCAAATGTGT 60.202 41.667 0.00 0.00 0.00 3.72
2499 2690 3.346315 TGCTCTCAAATGTGTATGGGTG 58.654 45.455 0.00 0.00 0.00 4.61
2510 2701 3.120041 GTGTATGGGTGTTTTTGTGTGC 58.880 45.455 0.00 0.00 0.00 4.57
2651 2842 5.982516 TGAAAATTGGTTCAAGGACGAAATG 59.017 36.000 0.00 0.00 34.59 2.32
2674 2865 3.988379 TTCTCAACAAACCATGTCAGC 57.012 42.857 0.00 0.00 42.99 4.26
2694 2885 1.888826 CGAAGGAGGGTCTGAGACTGT 60.889 57.143 12.92 0.00 32.47 3.55
2701 2892 2.763448 AGGGTCTGAGACTGTTGATAGC 59.237 50.000 12.92 0.00 32.47 2.97
2743 2934 4.125703 CTGGTAGGATCTTCTGTGATTGC 58.874 47.826 0.00 0.00 0.00 3.56
3108 3301 4.387026 TTCATTCATCCACAAGTCCCTT 57.613 40.909 0.00 0.00 0.00 3.95
3109 3302 3.955471 TCATTCATCCACAAGTCCCTTC 58.045 45.455 0.00 0.00 0.00 3.46
3187 3380 3.564225 GCCCACTGTACTATTGCAATACC 59.436 47.826 15.21 7.00 0.00 2.73
3211 3404 1.014804 TACCCCCAGAAATTGGCCAT 58.985 50.000 6.09 0.00 46.32 4.40
3212 3405 0.618393 ACCCCCAGAAATTGGCCATG 60.618 55.000 6.09 0.00 46.32 3.66
3471 3666 7.446319 TGAAATGCCTTCTTGATCGATAATCAT 59.554 33.333 0.00 0.00 36.81 2.45
3508 3704 5.758784 GGTTACCCATCAAGAACTATGTAGC 59.241 44.000 0.00 0.00 0.00 3.58
3529 3725 5.625150 AGCTCTGTAAACTCACTTTCCAAT 58.375 37.500 0.00 0.00 0.00 3.16
3619 3815 7.433680 TCAAATAGTTTTCTTTCAAAGAGGCC 58.566 34.615 0.00 0.00 39.03 5.19
3878 4074 2.366590 ACACACTGCATCAGAGTCAAGA 59.633 45.455 0.29 0.00 33.38 3.02
3892 4088 1.681264 GTCAAGACCCAACCCAACAAG 59.319 52.381 0.00 0.00 0.00 3.16
4005 4203 6.806249 GCTGGAAGAGAAGATATCGATGTAAG 59.194 42.308 8.54 0.00 34.07 2.34
4252 4450 8.996271 AGTTACACACAGATTGCATATCATATG 58.004 33.333 0.00 0.00 0.00 1.78
4282 4480 7.036220 TGACTCGAATTTTCTAGGTCAGAATC 58.964 38.462 0.00 0.00 42.88 2.52
4467 4666 0.311790 ACACATTGCCTTGTCTTGCG 59.688 50.000 0.00 0.00 0.00 4.85
4694 4893 4.464597 GGATAAGTTGGGGTTTTGCATGTA 59.535 41.667 0.00 0.00 0.00 2.29
4737 4938 7.330946 GCTTTGGGTTATTTTTACCTAAGCAAG 59.669 37.037 18.81 3.62 43.99 4.01
4738 4939 7.842887 TTGGGTTATTTTTACCTAAGCAAGT 57.157 32.000 0.00 0.00 32.04 3.16
4860 5067 3.123959 GCGTATCCGTGCTTTTGTTAAGA 59.876 43.478 0.00 0.00 36.15 2.10
5043 5250 5.656420 AGGAAATTGTACAAAATACCCCCA 58.344 37.500 13.23 0.00 0.00 4.96
5112 5319 4.899502 ACATTGGTAAGAGTTGAGACTGG 58.100 43.478 0.00 0.00 35.88 4.00
5295 5502 8.936864 CAAAGTTAGTAGGTTATTTGTCTCCAG 58.063 37.037 0.00 0.00 0.00 3.86
5303 5510 7.317722 AGGTTATTTGTCTCCAGAGTTAGTT 57.682 36.000 0.00 0.00 0.00 2.24
5339 5546 9.911788 AGACATTCTGATTTTGTATGTCCTAAT 57.088 29.630 12.07 0.00 43.72 1.73
5452 5659 1.588674 TGTGTTTACAGGCAGGAACG 58.411 50.000 0.00 0.00 31.91 3.95
5513 5720 1.492764 TCCGAGGTAACCATCCTTCC 58.507 55.000 0.00 0.00 35.20 3.46
5521 5728 5.289510 AGGTAACCATCCTTCCTGTCTATT 58.710 41.667 0.00 0.00 37.17 1.73
5522 5729 5.731678 AGGTAACCATCCTTCCTGTCTATTT 59.268 40.000 0.00 0.00 37.17 1.40
5525 5732 7.067129 GGTAACCATCCTTCCTGTCTATTTTTC 59.933 40.741 0.00 0.00 0.00 2.29
5539 5746 4.766891 TCTATTTTTCAGGTTCCTTGCCAG 59.233 41.667 0.00 0.00 0.00 4.85
5542 5749 1.691196 TTCAGGTTCCTTGCCAGTTG 58.309 50.000 0.00 0.00 0.00 3.16
5543 5750 0.823356 TCAGGTTCCTTGCCAGTTGC 60.823 55.000 0.00 0.00 41.77 4.17
5544 5751 1.531602 AGGTTCCTTGCCAGTTGCC 60.532 57.895 0.00 0.00 40.16 4.52
5545 5752 1.832167 GGTTCCTTGCCAGTTGCCA 60.832 57.895 0.00 0.00 40.16 4.92
5546 5753 1.187567 GGTTCCTTGCCAGTTGCCAT 61.188 55.000 0.00 0.00 40.16 4.40
5547 5754 0.681175 GTTCCTTGCCAGTTGCCATT 59.319 50.000 0.00 0.00 40.16 3.16
5548 5755 1.070601 GTTCCTTGCCAGTTGCCATTT 59.929 47.619 0.00 0.00 40.16 2.32
5549 5756 2.298729 GTTCCTTGCCAGTTGCCATTTA 59.701 45.455 0.00 0.00 40.16 1.40
5550 5757 2.170166 TCCTTGCCAGTTGCCATTTAG 58.830 47.619 0.00 0.00 40.16 1.85
5551 5758 2.170166 CCTTGCCAGTTGCCATTTAGA 58.830 47.619 0.00 0.00 40.16 2.10
5552 5759 2.165030 CCTTGCCAGTTGCCATTTAGAG 59.835 50.000 0.00 0.00 40.16 2.43
5553 5760 1.176527 TGCCAGTTGCCATTTAGAGC 58.823 50.000 0.00 0.00 40.16 4.09
5554 5761 1.176527 GCCAGTTGCCATTTAGAGCA 58.823 50.000 0.00 0.00 37.18 4.26
5555 5762 1.753073 GCCAGTTGCCATTTAGAGCAT 59.247 47.619 0.00 0.00 39.11 3.79
5556 5763 2.480759 GCCAGTTGCCATTTAGAGCATG 60.481 50.000 0.00 0.00 39.11 4.06
5557 5764 2.100252 CCAGTTGCCATTTAGAGCATGG 59.900 50.000 0.00 0.00 43.81 3.66
5558 5765 2.756760 CAGTTGCCATTTAGAGCATGGT 59.243 45.455 0.00 0.00 43.01 3.55
5559 5766 3.194116 CAGTTGCCATTTAGAGCATGGTT 59.806 43.478 0.00 0.00 43.01 3.67
5560 5767 4.398988 CAGTTGCCATTTAGAGCATGGTTA 59.601 41.667 0.00 0.00 43.01 2.85
5561 5768 5.016173 AGTTGCCATTTAGAGCATGGTTAA 58.984 37.500 0.00 0.00 43.01 2.01
5562 5769 5.658190 AGTTGCCATTTAGAGCATGGTTAAT 59.342 36.000 0.00 0.00 43.01 1.40
5563 5770 6.833416 AGTTGCCATTTAGAGCATGGTTAATA 59.167 34.615 0.00 0.00 43.01 0.98
5564 5771 6.882610 TGCCATTTAGAGCATGGTTAATAG 57.117 37.500 0.00 0.00 43.01 1.73
5565 5772 6.364701 TGCCATTTAGAGCATGGTTAATAGT 58.635 36.000 0.00 0.00 43.01 2.12
5566 5773 7.513856 TGCCATTTAGAGCATGGTTAATAGTA 58.486 34.615 0.00 0.00 43.01 1.82
5567 5774 8.163408 TGCCATTTAGAGCATGGTTAATAGTAT 58.837 33.333 0.00 0.00 43.01 2.12
5568 5775 9.667107 GCCATTTAGAGCATGGTTAATAGTATA 57.333 33.333 0.00 0.00 43.01 1.47
5571 5778 9.892130 ATTTAGAGCATGGTTAATAGTATAGCC 57.108 33.333 0.00 0.00 0.00 3.93
5572 5779 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
5573 5780 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
5574 5781 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
5575 5782 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
5576 5783 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
5577 5784 6.701340 CATGGTTAATAGTATAGCCAGCTGA 58.299 40.000 17.39 0.00 39.18 4.26
5578 5785 6.935240 TGGTTAATAGTATAGCCAGCTGAT 57.065 37.500 17.39 5.91 32.02 2.90
5579 5786 6.701340 TGGTTAATAGTATAGCCAGCTGATG 58.299 40.000 17.39 0.00 32.02 3.07
5594 5801 4.263018 GCTGATGGCTATATGAGTGTGA 57.737 45.455 0.00 0.00 38.06 3.58
5595 5802 3.993081 GCTGATGGCTATATGAGTGTGAC 59.007 47.826 0.00 0.00 38.06 3.67
5596 5803 4.502087 GCTGATGGCTATATGAGTGTGACA 60.502 45.833 0.00 0.00 38.06 3.58
5597 5804 5.791666 CTGATGGCTATATGAGTGTGACAT 58.208 41.667 0.00 0.00 0.00 3.06
5598 5805 5.544650 TGATGGCTATATGAGTGTGACATG 58.455 41.667 0.00 0.00 0.00 3.21
5599 5806 5.070847 TGATGGCTATATGAGTGTGACATGT 59.929 40.000 0.00 0.00 0.00 3.21
5600 5807 4.948847 TGGCTATATGAGTGTGACATGTC 58.051 43.478 19.27 19.27 0.00 3.06
5601 5808 4.405358 TGGCTATATGAGTGTGACATGTCA 59.595 41.667 24.56 24.56 37.24 3.58
5602 5809 5.070847 TGGCTATATGAGTGTGACATGTCAT 59.929 40.000 30.10 15.74 42.18 3.06
5603 5810 5.636965 GGCTATATGAGTGTGACATGTCATC 59.363 44.000 30.10 23.04 42.18 2.92
5604 5811 6.218746 GCTATATGAGTGTGACATGTCATCA 58.781 40.000 30.10 27.32 42.18 3.07
5605 5812 6.703165 GCTATATGAGTGTGACATGTCATCAA 59.297 38.462 30.10 18.71 42.18 2.57
5606 5813 7.095732 GCTATATGAGTGTGACATGTCATCAAG 60.096 40.741 30.10 21.92 42.18 3.02
5607 5814 4.605640 TGAGTGTGACATGTCATCAAGA 57.394 40.909 30.10 12.82 42.18 3.02
5608 5815 4.563061 TGAGTGTGACATGTCATCAAGAG 58.437 43.478 30.10 0.00 42.18 2.85
5609 5816 4.039609 TGAGTGTGACATGTCATCAAGAGT 59.960 41.667 30.10 14.75 42.18 3.24
5610 5817 4.965814 AGTGTGACATGTCATCAAGAGTT 58.034 39.130 30.10 8.82 42.18 3.01
5611 5818 6.101650 AGTGTGACATGTCATCAAGAGTTA 57.898 37.500 30.10 1.28 42.18 2.24
5612 5819 6.162079 AGTGTGACATGTCATCAAGAGTTAG 58.838 40.000 30.10 0.00 42.18 2.34
5613 5820 4.931601 TGTGACATGTCATCAAGAGTTAGC 59.068 41.667 30.10 13.68 42.18 3.09
5614 5821 4.931601 GTGACATGTCATCAAGAGTTAGCA 59.068 41.667 30.10 0.75 42.18 3.49
5615 5822 5.583854 GTGACATGTCATCAAGAGTTAGCAT 59.416 40.000 30.10 0.00 42.18 3.79
5616 5823 6.093219 GTGACATGTCATCAAGAGTTAGCATT 59.907 38.462 30.10 0.00 42.18 3.56
5617 5824 7.278646 GTGACATGTCATCAAGAGTTAGCATTA 59.721 37.037 30.10 0.00 42.18 1.90
5618 5825 7.989170 TGACATGTCATCAAGAGTTAGCATTAT 59.011 33.333 24.56 0.00 34.14 1.28
5678 5885 9.281371 GCTATATGATGTTGCCATGTCATATAT 57.719 33.333 16.04 3.54 34.05 0.86
5706 5913 9.239002 GTCATCACTTATAGTCACTCATACAAC 57.761 37.037 0.00 0.00 0.00 3.32
5709 5916 9.809096 ATCACTTATAGTCACTCATACAACAAG 57.191 33.333 0.00 0.00 0.00 3.16
5721 5928 9.378551 CACTCATACAACAAGGTTAGCTATAAA 57.621 33.333 0.00 0.00 0.00 1.40
5723 5930 9.601217 CTCATACAACAAGGTTAGCTATAAAGT 57.399 33.333 0.00 0.00 0.00 2.66
5736 5943 9.984190 GTTAGCTATAAAGTTGGCTATAAGAGT 57.016 33.333 0.00 0.00 37.18 3.24
5748 5955 5.222089 TGGCTATAAGAGTACTACTCCCTCC 60.222 48.000 11.94 6.60 46.18 4.30
5767 5974 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
5788 5995 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
5799 6006 9.549078 GAAAACCAAATAATCCCAAAACACTTA 57.451 29.630 0.00 0.00 0.00 2.24
5800 6007 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
5803 6010 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
5817 6024 2.497107 TAGGCGCGGTACATTAACTC 57.503 50.000 8.83 0.00 0.00 3.01
5818 6025 0.822164 AGGCGCGGTACATTAACTCT 59.178 50.000 8.83 0.00 0.00 3.24
5820 6027 1.470285 GGCGCGGTACATTAACTCTCA 60.470 52.381 8.83 0.00 0.00 3.27
5863 6070 8.554528 GTGACATATCAACCAATAAGAGATGTG 58.445 37.037 6.64 0.00 42.33 3.21
5868 6075 1.922447 ACCAATAAGAGATGTGGGCCA 59.078 47.619 0.00 0.00 35.32 5.36
5879 6086 0.614134 TGTGGGCCATGCATGCTTTA 60.614 50.000 21.69 4.59 0.00 1.85
5883 6090 2.215196 GGGCCATGCATGCTTTAAATG 58.785 47.619 21.69 13.22 0.00 2.32
5885 6092 3.495453 GGGCCATGCATGCTTTAAATGAT 60.495 43.478 21.69 0.00 0.00 2.45
5900 6107 9.129209 GCTTTAAATGATTTGAGACTACCAAAC 57.871 33.333 0.00 0.00 36.48 2.93
5902 6109 9.959749 TTTAAATGATTTGAGACTACCAAACAC 57.040 29.630 0.00 0.00 36.48 3.32
5911 6118 2.742053 GACTACCAAACACGACATGCAT 59.258 45.455 0.00 0.00 0.00 3.96
5932 6139 4.804868 TTGGTTAGTTCATTGCATGCAT 57.195 36.364 23.37 7.94 0.00 3.96
5935 6142 4.021280 TGGTTAGTTCATTGCATGCATTGT 60.021 37.500 31.09 20.08 0.00 2.71
5980 6187 1.346722 GTTCTCTCGTTTTCCCCTCCA 59.653 52.381 0.00 0.00 0.00 3.86
5996 6203 3.345808 CACCTTGGTCACGGTGCG 61.346 66.667 12.58 0.00 42.56 5.34
6001 6208 4.840005 TGGTCACGGTGCGCAACA 62.840 61.111 27.40 2.22 0.00 3.33
6014 6221 4.494199 GGTGCGCAACATAAGATGACTTAC 60.494 45.833 23.15 0.00 40.71 2.34
6016 6223 4.875536 TGCGCAACATAAGATGACTTACAT 59.124 37.500 8.16 0.00 40.71 2.29
6090 6300 8.114331 TCATATTTATTGCATTTGCCTAGGAG 57.886 34.615 14.75 0.00 41.18 3.69
6092 6302 9.013229 CATATTTATTGCATTTGCCTAGGAGTA 57.987 33.333 14.75 0.00 41.18 2.59
6093 6303 6.693315 TTTATTGCATTTGCCTAGGAGTAC 57.307 37.500 14.75 0.00 41.18 2.73
6094 6304 2.309528 TGCATTTGCCTAGGAGTACG 57.690 50.000 14.75 0.00 41.18 3.67
6129 6339 2.191641 GCATGAGAGCCCACTCCC 59.808 66.667 0.00 0.00 44.65 4.30
6130 6340 2.673200 GCATGAGAGCCCACTCCCA 61.673 63.158 0.00 0.00 44.65 4.37
6131 6341 1.222936 CATGAGAGCCCACTCCCAC 59.777 63.158 0.00 0.00 44.65 4.61
6132 6342 1.997874 ATGAGAGCCCACTCCCACC 60.998 63.158 0.00 0.00 44.65 4.61
6133 6343 2.607750 GAGAGCCCACTCCCACCA 60.608 66.667 0.00 0.00 44.65 4.17
6134 6344 1.997874 GAGAGCCCACTCCCACCAT 60.998 63.158 0.00 0.00 44.65 3.55
6135 6345 1.542375 AGAGCCCACTCCCACCATT 60.542 57.895 0.00 0.00 44.65 3.16
6136 6346 1.142688 AGAGCCCACTCCCACCATTT 61.143 55.000 0.00 0.00 44.65 2.32
6137 6347 0.251787 GAGCCCACTCCCACCATTTT 60.252 55.000 0.00 0.00 36.90 1.82
6138 6348 0.190815 AGCCCACTCCCACCATTTTT 59.809 50.000 0.00 0.00 0.00 1.94
6157 6367 4.543590 TTTTCATGTCTCTCTCCTCCAC 57.456 45.455 0.00 0.00 0.00 4.02
6158 6368 2.907458 TCATGTCTCTCTCCTCCACA 57.093 50.000 0.00 0.00 0.00 4.17
6159 6369 3.395054 TCATGTCTCTCTCCTCCACAT 57.605 47.619 0.00 0.00 0.00 3.21
6160 6370 4.526438 TCATGTCTCTCTCCTCCACATA 57.474 45.455 0.00 0.00 0.00 2.29
6161 6371 4.468713 TCATGTCTCTCTCCTCCACATAG 58.531 47.826 0.00 0.00 0.00 2.23
6162 6372 3.304911 TGTCTCTCTCCTCCACATAGG 57.695 52.381 0.00 0.00 38.06 2.57
6163 6373 1.960689 GTCTCTCTCCTCCACATAGGC 59.039 57.143 0.00 0.00 36.51 3.93
6164 6374 1.570979 TCTCTCTCCTCCACATAGGCA 59.429 52.381 0.00 0.00 36.51 4.75
6165 6375 2.023984 TCTCTCTCCTCCACATAGGCAA 60.024 50.000 0.00 0.00 36.51 4.52
6166 6376 2.768527 CTCTCTCCTCCACATAGGCAAA 59.231 50.000 0.00 0.00 36.51 3.68
6167 6377 3.181329 TCTCTCCTCCACATAGGCAAAA 58.819 45.455 0.00 0.00 36.51 2.44
6168 6378 3.198635 TCTCTCCTCCACATAGGCAAAAG 59.801 47.826 0.00 0.00 36.51 2.27
6169 6379 2.912956 TCTCCTCCACATAGGCAAAAGT 59.087 45.455 0.00 0.00 36.51 2.66
6170 6380 3.012518 CTCCTCCACATAGGCAAAAGTG 58.987 50.000 0.00 0.00 36.51 3.16
6182 6392 3.923017 GCAAAAGTGCCATGTAACTCT 57.077 42.857 0.00 0.00 45.68 3.24
6183 6393 4.243007 GCAAAAGTGCCATGTAACTCTT 57.757 40.909 0.00 0.00 45.68 2.85
6184 6394 3.983344 GCAAAAGTGCCATGTAACTCTTG 59.017 43.478 6.69 6.69 45.68 3.02
6185 6395 4.261572 GCAAAAGTGCCATGTAACTCTTGA 60.262 41.667 12.78 0.00 45.68 3.02
6186 6396 5.565439 GCAAAAGTGCCATGTAACTCTTGAT 60.565 40.000 12.78 0.00 45.68 2.57
6187 6397 5.633830 AAAGTGCCATGTAACTCTTGATG 57.366 39.130 0.00 0.00 0.00 3.07
6188 6398 4.558226 AGTGCCATGTAACTCTTGATGA 57.442 40.909 0.00 0.00 0.00 2.92
6189 6399 4.256920 AGTGCCATGTAACTCTTGATGAC 58.743 43.478 0.00 0.00 0.00 3.06
6190 6400 4.002982 GTGCCATGTAACTCTTGATGACA 58.997 43.478 0.00 0.00 0.00 3.58
6191 6401 4.637534 GTGCCATGTAACTCTTGATGACAT 59.362 41.667 0.00 0.00 0.00 3.06
6192 6402 4.637091 TGCCATGTAACTCTTGATGACATG 59.363 41.667 6.37 6.37 44.47 3.21
6194 6404 5.165911 CATGTAACTCTTGATGACATGGC 57.834 43.478 0.00 0.00 42.29 4.40
6195 6405 4.284829 TGTAACTCTTGATGACATGGCA 57.715 40.909 2.18 2.18 0.00 4.92
6196 6406 4.002982 TGTAACTCTTGATGACATGGCAC 58.997 43.478 1.45 0.00 0.00 5.01
6197 6407 1.730501 ACTCTTGATGACATGGCACG 58.269 50.000 1.45 0.00 0.00 5.34
6198 6408 0.376152 CTCTTGATGACATGGCACGC 59.624 55.000 1.45 0.00 0.00 5.34
6199 6409 0.036105 TCTTGATGACATGGCACGCT 60.036 50.000 1.45 0.00 0.00 5.07
6200 6410 0.376152 CTTGATGACATGGCACGCTC 59.624 55.000 1.45 0.00 0.00 5.03
6201 6411 0.321475 TTGATGACATGGCACGCTCA 60.321 50.000 1.45 0.00 0.00 4.26
6202 6412 0.107557 TGATGACATGGCACGCTCAT 60.108 50.000 1.45 0.00 0.00 2.90
6203 6413 1.138661 TGATGACATGGCACGCTCATA 59.861 47.619 1.45 0.00 0.00 2.15
6204 6414 2.224354 TGATGACATGGCACGCTCATAT 60.224 45.455 1.45 0.00 0.00 1.78
6205 6415 3.006752 TGATGACATGGCACGCTCATATA 59.993 43.478 1.45 0.00 0.00 0.86
6206 6416 3.030668 TGACATGGCACGCTCATATAG 57.969 47.619 0.00 0.00 0.00 1.31
6232 6442 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
6233 6443 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
6234 6444 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
6235 6445 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
6236 6446 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
6237 6447 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
6242 6452 6.533367 GCTATACTATTAACCATGCTCTCAGC 59.467 42.308 0.00 0.00 42.82 4.26
6255 6465 0.467106 TCTCAGCTATCTCTGGCGCT 60.467 55.000 7.64 0.00 34.91 5.92
6291 6501 5.694816 TGTAATGCATGTTTAACCGTGAAG 58.305 37.500 0.00 0.00 0.00 3.02
6320 6530 1.108776 CAAGCCCCATTCACCATCTG 58.891 55.000 0.00 0.00 0.00 2.90
6321 6531 0.685458 AAGCCCCATTCACCATCTGC 60.685 55.000 0.00 0.00 0.00 4.26
6329 6539 4.831155 CCCATTCACCATCTGCAGATAAAT 59.169 41.667 28.27 20.17 32.63 1.40
6332 6542 7.309012 CCCATTCACCATCTGCAGATAAATAAG 60.309 40.741 28.27 14.81 32.63 1.73
6530 6740 5.070313 ACATGATACCATTTGGGGCAATTAC 59.930 40.000 0.00 0.00 42.91 1.89
6539 6750 3.818295 TGGGGCAATTACTTTGGTAGT 57.182 42.857 0.00 0.00 41.04 2.73
6548 6759 1.296715 CTTTGGTAGTGGAGGCGCT 59.703 57.895 7.64 0.00 0.00 5.92
6584 6796 2.104331 CGCGGAAGACTATGCCGT 59.896 61.111 0.00 0.00 46.38 5.68
6603 6815 1.807142 GTTGGCAAGTGCTCTAGGAAC 59.193 52.381 0.00 0.00 41.70 3.62
6605 6817 0.741221 GGCAAGTGCTCTAGGAACGG 60.741 60.000 2.85 0.00 41.70 4.44
6611 6826 0.535335 TGCTCTAGGAACGGCGAATT 59.465 50.000 16.62 0.00 0.00 2.17
6623 6841 3.564511 ACGGCGAATTGTTTTTCTCATG 58.435 40.909 16.62 0.00 0.00 3.07
6648 6866 4.515191 AGTGCGTAACTTGATGTCAATTGT 59.485 37.500 5.13 0.00 34.57 2.71
6716 6934 3.880040 GGGAATTTGGCCCCATTTG 57.120 52.632 0.00 0.00 42.24 2.32
6739 6957 3.215975 CTCCAACGTTTACCTTTTCCCA 58.784 45.455 0.00 0.00 0.00 4.37
6740 6958 3.215975 TCCAACGTTTACCTTTTCCCAG 58.784 45.455 0.00 0.00 0.00 4.45
6759 6978 6.068010 TCCCAGAGCAACAATTTAGAGAAAA 58.932 36.000 0.00 0.00 0.00 2.29
6790 7009 1.379843 ACCATTCGGTCCCAATGCC 60.380 57.895 3.78 0.00 44.71 4.40
6814 7033 0.248458 CTGTTTTGCCACCACGTGTC 60.248 55.000 15.65 1.19 0.00 3.67
6870 7123 9.004717 CGAGAGGAAGTACTAGATGATATTCAA 57.995 37.037 0.00 0.00 0.00 2.69
6895 7148 0.107993 AGCATCACATGGACGACAGG 60.108 55.000 0.00 0.00 36.81 4.00
6897 7150 1.675714 GCATCACATGGACGACAGGAA 60.676 52.381 0.00 0.00 34.35 3.36
6909 7162 7.083875 TGGACGACAGGAAAAATTTGATATC 57.916 36.000 0.00 0.00 0.00 1.63
6944 7197 4.899352 AGTGAGGCTGATACTCAGTTTT 57.101 40.909 0.00 0.00 45.94 2.43
6946 7199 6.360370 AGTGAGGCTGATACTCAGTTTTTA 57.640 37.500 0.00 0.00 45.94 1.52
6947 7200 6.769512 AGTGAGGCTGATACTCAGTTTTTAA 58.230 36.000 0.00 0.00 45.94 1.52
7003 7256 8.601476 CCTCTGTACCAAAATATAAGACGTTTC 58.399 37.037 0.00 0.00 0.00 2.78
7006 7259 7.745015 TGTACCAAAATATAAGACGTTTCTGC 58.255 34.615 0.00 0.00 29.98 4.26
7008 7261 5.163794 ACCAAAATATAAGACGTTTCTGCCG 60.164 40.000 0.00 0.00 29.98 5.69
7010 7263 1.930567 TATAAGACGTTTCTGCCGGC 58.069 50.000 22.73 22.73 29.98 6.13
7013 7266 2.660258 AAGACGTTTCTGCCGGCTGT 62.660 55.000 29.70 15.67 44.46 4.40
7014 7267 2.203153 ACGTTTCTGCCGGCTGTT 60.203 55.556 29.70 8.03 0.00 3.16
7015 7268 2.171489 GACGTTTCTGCCGGCTGTTC 62.171 60.000 29.70 18.72 0.00 3.18
7024 7297 1.866925 CCGGCTGTTCGGTTTCTTC 59.133 57.895 0.00 0.00 44.60 2.87
7090 7374 4.141367 TGTGTTTCATTGGTCTGGTAGGAA 60.141 41.667 0.00 0.00 0.00 3.36
7195 7512 1.555075 AGCTCGAGAAATACTTGGCCA 59.445 47.619 18.75 0.00 31.25 5.36
7196 7513 2.171448 AGCTCGAGAAATACTTGGCCAT 59.829 45.455 18.75 0.00 31.25 4.40
7197 7514 2.545946 GCTCGAGAAATACTTGGCCATC 59.454 50.000 18.75 0.00 0.00 3.51
7198 7515 3.134458 CTCGAGAAATACTTGGCCATCC 58.866 50.000 6.09 0.00 0.00 3.51
7199 7516 2.771943 TCGAGAAATACTTGGCCATCCT 59.228 45.455 6.09 0.00 0.00 3.24
7200 7517 2.874701 CGAGAAATACTTGGCCATCCTG 59.125 50.000 6.09 0.00 0.00 3.86
7201 7518 2.620585 GAGAAATACTTGGCCATCCTGC 59.379 50.000 6.09 0.00 0.00 4.85
7296 7613 9.319223 CTAAAAGCGAGAGATTAAACTGAAAAC 57.681 33.333 0.00 0.00 39.83 2.43
7297 7614 7.497925 AAAGCGAGAGATTAAACTGAAAACT 57.502 32.000 0.00 0.00 39.83 2.66
7319 7636 5.182001 ACTGAAATGTGCAAAGACATCCTAC 59.818 40.000 0.00 0.00 35.43 3.18
7323 7640 0.392461 TGCAAAGACATCCTACGCCC 60.392 55.000 0.00 0.00 0.00 6.13
7374 7700 3.670627 GCGCTTCCTTGGAATAACTTGTG 60.671 47.826 0.00 0.00 0.00 3.33
7376 7702 3.507622 GCTTCCTTGGAATAACTTGTGCT 59.492 43.478 2.24 0.00 0.00 4.40
7377 7703 4.700213 GCTTCCTTGGAATAACTTGTGCTA 59.300 41.667 2.24 0.00 0.00 3.49
7379 7705 5.499004 TCCTTGGAATAACTTGTGCTAGT 57.501 39.130 0.00 0.00 0.00 2.57
7423 7749 2.182842 GCCTCGCCTACCTTGCATG 61.183 63.158 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
511 558 9.346725 GAATTCAGAAAATGTTGACCAAGTATC 57.653 33.333 0.00 0.00 0.00 2.24
554 636 7.470289 TTTGAAAAATGTTGAACGGGTATTG 57.530 32.000 0.00 0.00 0.00 1.90
560 642 8.125728 ACAAGTATTTGAAAAATGTTGAACGG 57.874 30.769 4.81 0.00 37.73 4.44
574 656 6.773080 TCGAAAACGTTGAACAAGTATTTGA 58.227 32.000 0.00 0.00 37.73 2.69
576 658 8.528295 CATTTCGAAAACGTTGAACAAGTATTT 58.472 29.630 15.66 0.00 0.00 1.40
750 873 2.512515 CTAGCCCAGAAGCACGGC 60.513 66.667 0.00 0.00 43.35 5.68
796 919 1.813192 GTTCAGCGAGAGGGAGGAG 59.187 63.158 0.00 0.00 0.00 3.69
853 979 4.900635 AAGCACGTCAACATTTTTCTCT 57.099 36.364 0.00 0.00 0.00 3.10
854 980 7.358352 CCAAATAAGCACGTCAACATTTTTCTC 60.358 37.037 0.00 0.00 0.00 2.87
855 981 6.420604 CCAAATAAGCACGTCAACATTTTTCT 59.579 34.615 0.00 0.00 0.00 2.52
869 995 2.413634 GGTGTACACGCCAAATAAGCAC 60.414 50.000 19.41 0.00 45.55 4.40
881 1008 2.404215 CTGTTTCAGAGGGTGTACACG 58.596 52.381 19.41 5.75 32.44 4.49
914 1041 0.895530 CTGACAAGGAGCCCGACTAA 59.104 55.000 0.00 0.00 0.00 2.24
957 1084 0.104409 CCCTAGCTAATCCCCCTGGT 60.104 60.000 0.00 0.00 0.00 4.00
1098 1230 4.954118 AGGAGGTGGTGGACGGCA 62.954 66.667 0.00 0.00 0.00 5.69
1145 1277 5.008712 GCCGTAATTTTGAGGGGAAGATAAG 59.991 44.000 0.00 0.00 0.00 1.73
1176 1309 5.419155 TCGAGATTTCTTCCTTCTAGCTCAA 59.581 40.000 0.00 0.00 0.00 3.02
1180 1313 5.000012 TGTCGAGATTTCTTCCTTCTAGC 58.000 43.478 0.00 0.00 0.00 3.42
1227 1363 6.127140 GGGAAATTCTAGTCCTGTTGCTACTA 60.127 42.308 0.00 0.00 34.10 1.82
1298 1434 7.599245 TCTTCTACTTTGCTTCAAGTAGCTAAC 59.401 37.037 18.73 0.00 41.76 2.34
1356 1513 2.032376 TACCACCGAAAACCGCCC 59.968 61.111 0.00 0.00 36.84 6.13
1399 1556 5.247110 AGAAGTGAGGAATCAGTAGCAAAGA 59.753 40.000 0.00 0.00 0.00 2.52
1407 1564 7.673641 AATATGAGAGAAGTGAGGAATCAGT 57.326 36.000 0.00 0.00 0.00 3.41
1412 1569 9.605275 CACATTAAATATGAGAGAAGTGAGGAA 57.395 33.333 0.00 0.00 0.00 3.36
1421 1578 9.817809 GAAGTACCACACATTAAATATGAGAGA 57.182 33.333 0.00 0.00 0.00 3.10
1432 1589 7.037438 GGAGATAAACGAAGTACCACACATTA 58.963 38.462 0.00 0.00 45.00 1.90
1439 1596 2.767960 GGGGGAGATAAACGAAGTACCA 59.232 50.000 0.00 0.00 45.00 3.25
1496 1653 7.042051 CGGATCTATAAAACTGTACATTGGTGG 60.042 40.741 0.00 0.00 0.00 4.61
1540 1697 3.854784 GCTGCTCAAACAATCAACCACTC 60.855 47.826 0.00 0.00 0.00 3.51
1543 1700 2.309613 AGCTGCTCAAACAATCAACCA 58.690 42.857 0.00 0.00 0.00 3.67
1562 1719 6.071672 TCAGAATCCCATCTATCTTAGCGAAG 60.072 42.308 0.00 0.00 0.00 3.79
1585 1747 3.505835 GGGGGTGACACAGTTTTCA 57.494 52.632 8.08 0.00 32.66 2.69
1601 1763 3.475566 ACACAGATATCAATCACGGGG 57.524 47.619 5.32 0.00 34.28 5.73
1633 1802 7.954620 TCTATATTCCCCCTTACTTCTAGTTCC 59.045 40.741 0.00 0.00 0.00 3.62
1649 1818 6.322712 ACACAGTCAGAGTTCTCTATATTCCC 59.677 42.308 1.83 0.00 0.00 3.97
1740 1917 1.202940 AGAAAAAGCTCCACCCTGTCC 60.203 52.381 0.00 0.00 0.00 4.02
1788 1967 0.183492 AACAGGCAGGTCAGCAGAAA 59.817 50.000 0.00 0.00 35.83 2.52
1798 1977 5.163530 TGTGAATTATGCATTAACAGGCAGG 60.164 40.000 3.54 0.00 44.24 4.85
1811 1990 7.814107 TGATTTTTCTCCAGTTGTGAATTATGC 59.186 33.333 0.00 0.00 0.00 3.14
1984 2163 3.316029 TCTGTTGACAAACATGAGCAAGG 59.684 43.478 0.00 0.00 45.12 3.61
2004 2183 5.048643 GCAAATAGAGCAGCATGATTCATCT 60.049 40.000 0.00 0.00 39.69 2.90
2011 2190 3.129813 CCAAAGCAAATAGAGCAGCATGA 59.870 43.478 0.00 0.00 39.69 3.07
2257 2441 8.484214 TGCCATATATTAAATTAAAGGTGCCA 57.516 30.769 0.00 0.00 0.00 4.92
2258 2442 8.585018 ACTGCCATATATTAAATTAAAGGTGCC 58.415 33.333 0.00 0.00 0.00 5.01
2271 2462 8.664992 TCCTTGAATTACCACTGCCATATATTA 58.335 33.333 0.00 0.00 0.00 0.98
2492 2683 2.025155 ACGCACACAAAAACACCCATA 58.975 42.857 0.00 0.00 0.00 2.74
2499 2690 6.561945 TTAGAATGAAACGCACACAAAAAC 57.438 33.333 0.00 0.00 0.00 2.43
2651 2842 4.504097 GCTGACATGGTTTGTTGAGAAAAC 59.496 41.667 0.00 0.00 39.18 2.43
2674 2865 0.814457 CAGTCTCAGACCCTCCTTCG 59.186 60.000 0.00 0.00 32.18 3.79
2701 2892 1.126846 GTTGTTTCTCGAGCGATGGTG 59.873 52.381 7.81 0.00 0.00 4.17
2743 2934 1.676006 ACAACGCTCCAAGACAAAAGG 59.324 47.619 0.00 0.00 0.00 3.11
2876 3067 7.094377 ACGATTACTGTCATTTGGCAATAAACT 60.094 33.333 0.00 0.00 24.96 2.66
3082 3275 4.201990 GGACTTGTGGATGAATGAATCTGC 60.202 45.833 0.00 0.00 0.00 4.26
3108 3301 9.618890 CAGAATTCTTTATCTTGAATACCCTGA 57.381 33.333 4.86 0.00 32.73 3.86
3109 3302 9.401058 ACAGAATTCTTTATCTTGAATACCCTG 57.599 33.333 4.86 0.00 34.63 4.45
3187 3380 1.476488 CCAATTTCTGGGGGTAAAGCG 59.524 52.381 0.00 0.00 42.17 4.68
3508 3704 6.931281 TGAGATTGGAAAGTGAGTTTACAGAG 59.069 38.462 0.00 0.00 40.27 3.35
3529 3725 9.519191 TGAATCTTTTCATCACCTTTAATGAGA 57.481 29.630 0.00 0.00 36.94 3.27
3610 3806 1.072331 AGGTACAGTGTGGCCTCTTTG 59.928 52.381 5.88 5.95 0.00 2.77
3619 3815 1.674359 TGGCACAAAGGTACAGTGTG 58.326 50.000 5.88 14.96 44.64 3.82
3878 4074 0.032615 TTCAGCTTGTTGGGTTGGGT 60.033 50.000 0.00 0.00 0.00 4.51
3892 4088 3.308438 AAAGGTGCAATGATGTTCAGC 57.692 42.857 0.00 0.00 0.00 4.26
4005 4203 5.995897 ACAGATACAGTTCCAAACTACAACC 59.004 40.000 0.00 0.00 40.46 3.77
4252 4450 6.757010 TGACCTAGAAAATTCGAGTCATAAGC 59.243 38.462 10.07 0.00 33.56 3.09
4282 4480 7.388776 TCATTGTCTACCAACTTGAGATTTCTG 59.611 37.037 0.00 0.00 35.44 3.02
4467 4666 6.206634 TGATCAGGTAAGGATTGTGTTGTTTC 59.793 38.462 0.00 0.00 0.00 2.78
4694 4893 3.402628 AAGCTTTACTCCGACACATGT 57.597 42.857 0.00 0.00 0.00 3.21
4737 4938 2.099427 GCTACCTGCCTCAGTACTACAC 59.901 54.545 0.00 0.00 35.15 2.90
4738 4939 2.376109 GCTACCTGCCTCAGTACTACA 58.624 52.381 0.00 0.00 35.15 2.74
5098 5305 2.224402 GCTGGAACCAGTCTCAACTCTT 60.224 50.000 19.97 0.00 45.24 2.85
5153 5360 9.323985 TGAAATACAAAGTGGATTTTTGAAAGG 57.676 29.630 0.14 0.00 40.77 3.11
5165 5372 7.819644 TGACAGATGAATGAAATACAAAGTGG 58.180 34.615 0.00 0.00 0.00 4.00
5400 5607 8.932791 TCGATCAAACAGGAAATAGAAAACTAC 58.067 33.333 0.00 0.00 0.00 2.73
5452 5659 4.378046 CCGTGCACAAACTCCTTAATGTAC 60.378 45.833 18.64 0.00 0.00 2.90
5513 5720 5.335976 GGCAAGGAACCTGAAAAATAGACAG 60.336 44.000 0.00 0.00 0.00 3.51
5521 5728 2.430332 CAACTGGCAAGGAACCTGAAAA 59.570 45.455 0.00 0.00 0.00 2.29
5522 5729 2.031120 CAACTGGCAAGGAACCTGAAA 58.969 47.619 0.00 0.00 0.00 2.69
5525 5732 1.662044 GCAACTGGCAAGGAACCTG 59.338 57.895 0.00 0.00 43.97 4.00
5545 5752 9.892130 GGCTATACTATTAACCATGCTCTAAAT 57.108 33.333 0.00 0.00 0.00 1.40
5546 5753 8.876181 TGGCTATACTATTAACCATGCTCTAAA 58.124 33.333 0.00 0.00 0.00 1.85
5547 5754 8.430573 TGGCTATACTATTAACCATGCTCTAA 57.569 34.615 0.00 0.00 0.00 2.10
5548 5755 7.363880 GCTGGCTATACTATTAACCATGCTCTA 60.364 40.741 0.00 0.00 0.00 2.43
5549 5756 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
5550 5757 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
5551 5758 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
5552 5759 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
5553 5760 6.701340 TCAGCTGGCTATACTATTAACCATG 58.299 40.000 15.13 0.00 0.00 3.66
5554 5761 6.935240 TCAGCTGGCTATACTATTAACCAT 57.065 37.500 15.13 0.00 0.00 3.55
5555 5762 6.295859 CCATCAGCTGGCTATACTATTAACCA 60.296 42.308 15.13 0.00 38.47 3.67
5556 5763 6.109359 CCATCAGCTGGCTATACTATTAACC 58.891 44.000 15.13 0.00 38.47 2.85
5573 5780 3.993081 GTCACACTCATATAGCCATCAGC 59.007 47.826 0.00 0.00 44.25 4.26
5574 5781 5.205759 TGTCACACTCATATAGCCATCAG 57.794 43.478 0.00 0.00 0.00 2.90
5575 5782 5.070847 ACATGTCACACTCATATAGCCATCA 59.929 40.000 0.00 0.00 0.00 3.07
5576 5783 5.545588 ACATGTCACACTCATATAGCCATC 58.454 41.667 0.00 0.00 0.00 3.51
5577 5784 5.070847 TGACATGTCACACTCATATAGCCAT 59.929 40.000 24.56 0.00 34.14 4.40
5578 5785 4.405358 TGACATGTCACACTCATATAGCCA 59.595 41.667 24.56 0.00 34.14 4.75
5579 5786 4.948847 TGACATGTCACACTCATATAGCC 58.051 43.478 24.56 0.00 34.14 3.93
5580 5787 6.218746 TGATGACATGTCACACTCATATAGC 58.781 40.000 30.09 7.21 43.11 2.97
5581 5788 8.139989 TCTTGATGACATGTCACACTCATATAG 58.860 37.037 30.09 21.19 43.11 1.31
5582 5789 8.010733 TCTTGATGACATGTCACACTCATATA 57.989 34.615 30.09 13.94 43.11 0.86
5583 5790 6.881570 TCTTGATGACATGTCACACTCATAT 58.118 36.000 30.09 12.28 43.11 1.78
5584 5791 6.071165 ACTCTTGATGACATGTCACACTCATA 60.071 38.462 30.09 18.00 43.11 2.15
5585 5792 5.156608 TCTTGATGACATGTCACACTCAT 57.843 39.130 30.09 13.83 43.11 2.90
5586 5793 4.039609 ACTCTTGATGACATGTCACACTCA 59.960 41.667 30.09 25.07 43.11 3.41
5587 5794 4.564041 ACTCTTGATGACATGTCACACTC 58.436 43.478 30.09 22.89 43.11 3.51
5588 5795 4.613925 ACTCTTGATGACATGTCACACT 57.386 40.909 30.09 15.39 43.11 3.55
5589 5796 5.163913 GCTAACTCTTGATGACATGTCACAC 60.164 44.000 30.09 24.63 43.11 3.82
5590 5797 4.931601 GCTAACTCTTGATGACATGTCACA 59.068 41.667 30.09 24.25 43.11 3.58
5591 5798 4.931601 TGCTAACTCTTGATGACATGTCAC 59.068 41.667 30.09 22.20 43.11 3.67
5592 5799 5.151297 TGCTAACTCTTGATGACATGTCA 57.849 39.130 29.67 29.67 44.59 3.58
5593 5800 6.674694 AATGCTAACTCTTGATGACATGTC 57.325 37.500 19.27 19.27 0.00 3.06
5594 5801 8.743085 AATAATGCTAACTCTTGATGACATGT 57.257 30.769 0.00 0.00 0.00 3.21
5599 5806 9.265901 GCTCTTAATAATGCTAACTCTTGATGA 57.734 33.333 0.00 0.00 0.00 2.92
5600 5807 9.049523 TGCTCTTAATAATGCTAACTCTTGATG 57.950 33.333 0.00 0.00 0.00 3.07
5601 5808 9.790344 ATGCTCTTAATAATGCTAACTCTTGAT 57.210 29.630 0.00 0.00 0.00 2.57
5602 5809 9.049523 CATGCTCTTAATAATGCTAACTCTTGA 57.950 33.333 0.00 0.00 0.00 3.02
5603 5810 8.288208 CCATGCTCTTAATAATGCTAACTCTTG 58.712 37.037 0.00 0.00 0.00 3.02
5604 5811 7.995488 ACCATGCTCTTAATAATGCTAACTCTT 59.005 33.333 0.00 0.00 0.00 2.85
5605 5812 7.512992 ACCATGCTCTTAATAATGCTAACTCT 58.487 34.615 0.00 0.00 0.00 3.24
5606 5813 7.736447 ACCATGCTCTTAATAATGCTAACTC 57.264 36.000 0.00 0.00 0.00 3.01
5607 5814 9.627123 TTAACCATGCTCTTAATAATGCTAACT 57.373 29.630 0.00 0.00 0.00 2.24
5611 5818 9.799106 ACTATTAACCATGCTCTTAATAATGCT 57.201 29.630 0.00 0.00 28.84 3.79
5617 5824 9.892130 GGCTATACTATTAACCATGCTCTTAAT 57.108 33.333 0.00 0.00 0.00 1.40
5618 5825 8.876181 TGGCTATACTATTAACCATGCTCTTAA 58.124 33.333 0.00 0.00 0.00 1.85
5662 5869 7.821359 AGTGATGACTATATATGACATGGCAAC 59.179 37.037 4.70 0.00 0.00 4.17
5678 5885 9.847224 TGTATGAGTGACTATAAGTGATGACTA 57.153 33.333 0.00 0.00 0.00 2.59
5681 5888 8.966868 TGTTGTATGAGTGACTATAAGTGATGA 58.033 33.333 0.00 0.00 0.00 2.92
5694 5901 5.483685 AGCTAACCTTGTTGTATGAGTGA 57.516 39.130 0.00 0.00 0.00 3.41
5695 5902 8.942338 TTATAGCTAACCTTGTTGTATGAGTG 57.058 34.615 0.00 0.00 0.00 3.51
5706 5913 9.555727 TTATAGCCAACTTTATAGCTAACCTTG 57.444 33.333 0.00 0.00 40.92 3.61
5709 5916 9.425577 CTCTTATAGCCAACTTTATAGCTAACC 57.574 37.037 0.00 0.00 40.92 2.85
5721 5928 6.069994 GGGAGTAGTACTCTTATAGCCAACT 58.930 44.000 25.70 0.00 44.46 3.16
5723 5930 6.277064 AGGGAGTAGTACTCTTATAGCCAA 57.723 41.667 25.70 0.00 44.46 4.52
5736 5943 2.437281 CACCTAGACGGAGGGAGTAGTA 59.563 54.545 5.42 0.00 41.36 1.82
5737 5944 1.212441 CACCTAGACGGAGGGAGTAGT 59.788 57.143 5.42 0.00 41.36 2.73
5738 5945 1.212441 ACACCTAGACGGAGGGAGTAG 59.788 57.143 5.42 0.00 41.36 2.57
5743 5950 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
5748 5955 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
5788 5995 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
5799 6006 0.822164 AGAGTTAATGTACCGCGCCT 59.178 50.000 0.00 0.00 0.00 5.52
5800 6007 1.206523 GAGAGTTAATGTACCGCGCC 58.793 55.000 0.00 0.00 0.00 6.53
5803 6010 3.975670 CGAGATGAGAGTTAATGTACCGC 59.024 47.826 0.00 0.00 0.00 5.68
5817 6024 4.444388 TCACGAAACAAGAAACGAGATGAG 59.556 41.667 0.00 0.00 0.00 2.90
5818 6025 4.208460 GTCACGAAACAAGAAACGAGATGA 59.792 41.667 0.00 0.00 0.00 2.92
5820 6027 4.116961 TGTCACGAAACAAGAAACGAGAT 58.883 39.130 0.00 0.00 0.00 2.75
5863 6070 2.158928 TCATTTAAAGCATGCATGGCCC 60.159 45.455 27.34 11.50 0.00 5.80
5868 6075 7.553334 AGTCTCAAATCATTTAAAGCATGCAT 58.447 30.769 21.98 4.57 0.00 3.96
5879 6086 6.485313 TCGTGTTTGGTAGTCTCAAATCATTT 59.515 34.615 0.00 0.00 36.64 2.32
5883 6090 4.748102 TGTCGTGTTTGGTAGTCTCAAATC 59.252 41.667 0.00 0.00 36.64 2.17
5885 6092 4.126208 TGTCGTGTTTGGTAGTCTCAAA 57.874 40.909 0.00 0.00 0.00 2.69
5900 6107 3.188254 TGAACTAACCAATGCATGTCGTG 59.812 43.478 0.00 0.00 0.00 4.35
5902 6109 4.621068 ATGAACTAACCAATGCATGTCG 57.379 40.909 0.00 0.00 0.00 4.35
5953 6160 5.001874 GGGGAAAACGAGAGAACTTAATGT 58.998 41.667 0.00 0.00 0.00 2.71
5996 6203 9.197694 CTAGGTATGTAAGTCATCTTATGTTGC 57.802 37.037 0.00 0.00 38.25 4.17
6001 6208 8.162085 TCCGTCTAGGTATGTAAGTCATCTTAT 58.838 37.037 0.00 0.00 41.99 1.73
6014 6221 2.660670 ACTCCCTCCGTCTAGGTATG 57.339 55.000 0.00 0.00 41.99 2.39
6016 6223 2.769209 AGTACTCCCTCCGTCTAGGTA 58.231 52.381 0.00 0.00 41.99 3.08
6041 6251 8.058235 TGAAGAAAGAGATAGAGAGAGGATGAA 58.942 37.037 0.00 0.00 0.00 2.57
6063 6273 8.579006 TCCTAGGCAAATGCAATAAATATGAAG 58.421 33.333 2.96 0.00 44.36 3.02
6077 6287 2.309528 TGCGTACTCCTAGGCAAATG 57.690 50.000 2.96 0.00 40.08 2.32
6080 6290 3.192844 GCTATATGCGTACTCCTAGGCAA 59.807 47.826 2.96 0.00 44.70 4.52
6081 6291 2.753452 GCTATATGCGTACTCCTAGGCA 59.247 50.000 2.96 0.00 45.40 4.75
6082 6292 3.423996 GCTATATGCGTACTCCTAGGC 57.576 52.381 2.96 0.00 34.82 3.93
6090 6300 5.200523 GCAAGAGCCTAGCTATATGCGTAC 61.201 50.000 0.00 0.00 39.88 3.67
6092 6302 2.353208 GCAAGAGCCTAGCTATATGCGT 60.353 50.000 0.00 0.00 39.88 5.24
6093 6303 2.266554 GCAAGAGCCTAGCTATATGCG 58.733 52.381 0.00 0.00 39.88 4.73
6094 6304 3.325293 TGCAAGAGCCTAGCTATATGC 57.675 47.619 11.58 11.58 39.88 3.14
6135 6345 4.347876 TGTGGAGGAGAGAGACATGAAAAA 59.652 41.667 0.00 0.00 0.00 1.94
6136 6346 3.903714 TGTGGAGGAGAGAGACATGAAAA 59.096 43.478 0.00 0.00 0.00 2.29
6137 6347 3.510459 TGTGGAGGAGAGAGACATGAAA 58.490 45.455 0.00 0.00 0.00 2.69
6138 6348 3.175438 TGTGGAGGAGAGAGACATGAA 57.825 47.619 0.00 0.00 0.00 2.57
6139 6349 2.907458 TGTGGAGGAGAGAGACATGA 57.093 50.000 0.00 0.00 0.00 3.07
6140 6350 3.573538 CCTATGTGGAGGAGAGAGACATG 59.426 52.174 0.00 0.00 39.15 3.21
6141 6351 3.843422 CCTATGTGGAGGAGAGAGACAT 58.157 50.000 0.00 0.00 39.15 3.06
6142 6352 2.688214 GCCTATGTGGAGGAGAGAGACA 60.688 54.545 0.00 0.00 39.15 3.41
6143 6353 1.960689 GCCTATGTGGAGGAGAGAGAC 59.039 57.143 0.00 0.00 39.15 3.36
6144 6354 1.570979 TGCCTATGTGGAGGAGAGAGA 59.429 52.381 0.00 0.00 39.15 3.10
6145 6355 2.079170 TGCCTATGTGGAGGAGAGAG 57.921 55.000 0.00 0.00 39.15 3.20
6146 6356 2.550277 TTGCCTATGTGGAGGAGAGA 57.450 50.000 0.00 0.00 39.15 3.10
6147 6357 3.054802 ACTTTTGCCTATGTGGAGGAGAG 60.055 47.826 0.00 0.00 39.15 3.20
6148 6358 2.912956 ACTTTTGCCTATGTGGAGGAGA 59.087 45.455 0.00 0.00 39.15 3.71
6149 6359 3.012518 CACTTTTGCCTATGTGGAGGAG 58.987 50.000 0.00 0.00 39.15 3.69
6150 6360 2.879756 GCACTTTTGCCTATGTGGAGGA 60.880 50.000 0.00 0.00 43.66 3.71
6151 6361 1.474077 GCACTTTTGCCTATGTGGAGG 59.526 52.381 0.00 0.00 43.66 4.30
6152 6362 2.927553 GCACTTTTGCCTATGTGGAG 57.072 50.000 0.00 0.00 43.66 3.86
6163 6373 5.437289 TCAAGAGTTACATGGCACTTTTG 57.563 39.130 17.27 17.27 36.77 2.44
6164 6374 5.769662 TCATCAAGAGTTACATGGCACTTTT 59.230 36.000 0.00 0.00 0.00 2.27
6165 6375 5.182001 GTCATCAAGAGTTACATGGCACTTT 59.818 40.000 0.00 0.00 0.00 2.66
6166 6376 4.697352 GTCATCAAGAGTTACATGGCACTT 59.303 41.667 0.00 0.00 0.00 3.16
6167 6377 4.256920 GTCATCAAGAGTTACATGGCACT 58.743 43.478 0.00 0.00 0.00 4.40
6168 6378 4.002982 TGTCATCAAGAGTTACATGGCAC 58.997 43.478 0.00 0.00 0.00 5.01
6169 6379 4.284829 TGTCATCAAGAGTTACATGGCA 57.715 40.909 0.00 0.00 0.00 4.92
6170 6380 5.165911 CATGTCATCAAGAGTTACATGGC 57.834 43.478 0.00 0.00 42.25 4.40
6172 6382 4.637091 TGCCATGTCATCAAGAGTTACATG 59.363 41.667 0.00 0.00 44.41 3.21
6173 6383 4.637534 GTGCCATGTCATCAAGAGTTACAT 59.362 41.667 0.00 0.00 0.00 2.29
6174 6384 4.002982 GTGCCATGTCATCAAGAGTTACA 58.997 43.478 0.00 0.00 0.00 2.41
6175 6385 3.062639 CGTGCCATGTCATCAAGAGTTAC 59.937 47.826 0.00 0.00 0.00 2.50
6176 6386 3.261580 CGTGCCATGTCATCAAGAGTTA 58.738 45.455 0.00 0.00 0.00 2.24
6177 6387 2.079158 CGTGCCATGTCATCAAGAGTT 58.921 47.619 0.00 0.00 0.00 3.01
6178 6388 1.730501 CGTGCCATGTCATCAAGAGT 58.269 50.000 0.00 0.00 0.00 3.24
6179 6389 0.376152 GCGTGCCATGTCATCAAGAG 59.624 55.000 0.00 0.00 0.00 2.85
6180 6390 0.036105 AGCGTGCCATGTCATCAAGA 60.036 50.000 0.00 0.00 0.00 3.02
6181 6391 0.376152 GAGCGTGCCATGTCATCAAG 59.624 55.000 0.00 0.00 0.00 3.02
6182 6392 0.321475 TGAGCGTGCCATGTCATCAA 60.321 50.000 0.00 0.00 0.00 2.57
6183 6393 0.107557 ATGAGCGTGCCATGTCATCA 60.108 50.000 0.00 0.00 0.00 3.07
6184 6394 1.869774 TATGAGCGTGCCATGTCATC 58.130 50.000 5.60 0.00 32.01 2.92
6185 6395 2.556144 ATATGAGCGTGCCATGTCAT 57.444 45.000 7.03 7.03 34.11 3.06
6186 6396 2.867647 GCTATATGAGCGTGCCATGTCA 60.868 50.000 6.20 0.00 42.62 3.58
6187 6397 1.728971 GCTATATGAGCGTGCCATGTC 59.271 52.381 6.20 0.00 42.62 3.06
6188 6398 1.800805 GCTATATGAGCGTGCCATGT 58.199 50.000 6.20 3.15 42.62 3.21
6210 6420 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
6211 6421 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
6212 6422 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
6213 6423 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
6214 6424 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
6215 6425 6.496911 TGAGAGCATGGTTAATAGTATAGCCA 59.503 38.462 0.00 3.65 39.96 4.75
6216 6426 6.936279 TGAGAGCATGGTTAATAGTATAGCC 58.064 40.000 0.00 0.00 0.00 3.93
6217 6427 6.533367 GCTGAGAGCATGGTTAATAGTATAGC 59.467 42.308 0.00 0.00 41.89 2.97
6218 6428 7.835822 AGCTGAGAGCATGGTTAATAGTATAG 58.164 38.462 0.00 0.00 45.56 1.31
6219 6429 7.782897 AGCTGAGAGCATGGTTAATAGTATA 57.217 36.000 0.00 0.00 45.56 1.47
6220 6430 6.678568 AGCTGAGAGCATGGTTAATAGTAT 57.321 37.500 0.00 0.00 45.56 2.12
6221 6431 7.671819 AGATAGCTGAGAGCATGGTTAATAGTA 59.328 37.037 0.00 0.00 45.56 1.82
6222 6432 6.496565 AGATAGCTGAGAGCATGGTTAATAGT 59.503 38.462 0.00 0.00 45.56 2.12
6223 6433 6.934056 AGATAGCTGAGAGCATGGTTAATAG 58.066 40.000 0.00 0.00 45.56 1.73
6224 6434 6.723515 AGAGATAGCTGAGAGCATGGTTAATA 59.276 38.462 0.00 0.00 45.56 0.98
6225 6435 5.543405 AGAGATAGCTGAGAGCATGGTTAAT 59.457 40.000 0.00 0.00 45.56 1.40
6226 6436 4.898265 AGAGATAGCTGAGAGCATGGTTAA 59.102 41.667 0.00 0.00 45.56 2.01
6227 6437 4.280425 CAGAGATAGCTGAGAGCATGGTTA 59.720 45.833 0.00 0.00 45.56 2.85
6228 6438 3.069872 CAGAGATAGCTGAGAGCATGGTT 59.930 47.826 0.00 0.00 45.56 3.67
6229 6439 2.629137 CAGAGATAGCTGAGAGCATGGT 59.371 50.000 0.00 0.00 45.56 3.55
6230 6440 2.028839 CCAGAGATAGCTGAGAGCATGG 60.029 54.545 0.00 0.00 45.56 3.66
6231 6441 2.610976 GCCAGAGATAGCTGAGAGCATG 60.611 54.545 0.00 0.00 45.56 4.06
6232 6442 1.619827 GCCAGAGATAGCTGAGAGCAT 59.380 52.381 0.00 0.00 45.56 3.79
6233 6443 1.039068 GCCAGAGATAGCTGAGAGCA 58.961 55.000 0.00 0.00 45.56 4.26
6234 6444 0.039256 CGCCAGAGATAGCTGAGAGC 60.039 60.000 0.00 0.00 42.84 4.09
6235 6445 0.039256 GCGCCAGAGATAGCTGAGAG 60.039 60.000 0.00 0.00 38.14 3.20
6236 6446 0.467106 AGCGCCAGAGATAGCTGAGA 60.467 55.000 2.29 0.00 38.67 3.27
6237 6447 0.039256 GAGCGCCAGAGATAGCTGAG 60.039 60.000 2.29 0.00 40.39 3.35
6242 6452 4.576216 TCTTTAAGAGCGCCAGAGATAG 57.424 45.455 2.29 0.00 0.00 2.08
6291 6501 0.985490 ATGGGGCTTGAGAGGAGACC 60.985 60.000 0.00 0.00 41.91 3.85
6329 6539 8.336235 ACTCCAGGGATGTAAATTCATTTCTTA 58.664 33.333 0.00 0.00 0.00 2.10
6332 6542 7.556275 TGTACTCCAGGGATGTAAATTCATTTC 59.444 37.037 0.00 0.00 0.00 2.17
6418 6628 1.295357 TGCAACGTAGCATGGAACCG 61.295 55.000 0.00 0.00 40.11 4.44
6499 6709 2.691526 CAAATGGTATCATGTGGCAGCT 59.308 45.455 0.00 0.00 35.47 4.24
6530 6740 0.741221 GAGCGCCTCCACTACCAAAG 60.741 60.000 2.29 0.00 0.00 2.77
6539 6750 1.443407 GCTTATCAGAGCGCCTCCA 59.557 57.895 2.29 0.00 32.23 3.86
6548 6759 2.485479 GCGGGAATCTTGGCTTATCAGA 60.485 50.000 0.00 0.00 0.00 3.27
6584 6796 1.608025 CGTTCCTAGAGCACTTGCCAA 60.608 52.381 0.00 0.00 43.38 4.52
6595 6807 2.754946 AACAATTCGCCGTTCCTAGA 57.245 45.000 0.00 0.00 0.00 2.43
6603 6815 2.916716 CCATGAGAAAAACAATTCGCCG 59.083 45.455 0.00 0.00 34.46 6.46
6605 6817 4.618489 CACTCCATGAGAAAAACAATTCGC 59.382 41.667 0.00 0.00 34.46 4.70
6611 6826 2.571212 ACGCACTCCATGAGAAAAACA 58.429 42.857 0.00 0.00 33.32 2.83
6623 6841 2.683968 TGACATCAAGTTACGCACTCC 58.316 47.619 0.00 0.00 32.94 3.85
6648 6866 2.291282 CCCCTGGCTGGTGTACATTTTA 60.291 50.000 9.73 0.00 0.00 1.52
6712 6930 2.871453 AGGTAAACGTTGGAGCCAAAT 58.129 42.857 0.00 0.00 37.70 2.32
6715 6933 2.351706 AAAGGTAAACGTTGGAGCCA 57.648 45.000 0.00 0.00 0.00 4.75
6716 6934 2.030540 GGAAAAGGTAAACGTTGGAGCC 60.031 50.000 0.00 1.95 0.00 4.70
6781 7000 3.195396 GCAAAACAGATAAGGCATTGGGA 59.805 43.478 0.00 0.00 0.00 4.37
6790 7009 2.552315 ACGTGGTGGCAAAACAGATAAG 59.448 45.455 0.00 0.00 0.00 1.73
6814 7033 3.266541 TGATTGTTTAGCAGCACAACG 57.733 42.857 0.00 0.00 35.75 4.10
6850 7069 9.920133 TGCTCATTGAATATCATCTAGTACTTC 57.080 33.333 0.00 0.00 0.00 3.01
6870 7123 1.676746 GTCCATGTGATGCTGCTCAT 58.323 50.000 0.00 0.00 38.32 2.90
6909 7162 2.349886 GCCTCACTGCAGTAAATTCTCG 59.650 50.000 21.20 4.48 0.00 4.04
6980 7233 7.903431 GCAGAAACGTCTTATATTTTGGTACAG 59.097 37.037 0.00 0.00 32.17 2.74
7008 7261 3.710326 AAAAGAAGAAACCGAACAGCC 57.290 42.857 0.00 0.00 0.00 4.85
7035 7308 3.013921 AGCAAGAGAAACCGTGTCAAAA 58.986 40.909 0.00 0.00 0.00 2.44
7045 7318 3.495001 ACGCTACTTTGAGCAAGAGAAAC 59.505 43.478 0.00 0.00 42.99 2.78
7090 7374 0.603065 GGCGCCCTTTCAAATCTTGT 59.397 50.000 18.11 0.00 0.00 3.16
7169 7453 4.508662 CAAGTATTTCTCGAGCTTCCCTT 58.491 43.478 7.81 4.23 0.00 3.95
7170 7454 3.118592 CCAAGTATTTCTCGAGCTTCCCT 60.119 47.826 7.81 0.00 0.00 4.20
7171 7455 3.198872 CCAAGTATTTCTCGAGCTTCCC 58.801 50.000 7.81 0.00 0.00 3.97
7172 7456 2.609916 GCCAAGTATTTCTCGAGCTTCC 59.390 50.000 7.81 0.00 0.00 3.46
7173 7457 2.609916 GGCCAAGTATTTCTCGAGCTTC 59.390 50.000 7.81 0.00 0.00 3.86
7174 7458 2.027192 TGGCCAAGTATTTCTCGAGCTT 60.027 45.455 0.61 1.68 0.00 3.74
7202 7519 1.715862 ATGCATGCAGAGCAGAAGCG 61.716 55.000 26.69 0.00 46.36 4.68
7203 7520 0.029567 GATGCATGCAGAGCAGAAGC 59.970 55.000 26.69 0.00 46.36 3.86
7296 7613 4.778534 AGGATGTCTTTGCACATTTCAG 57.221 40.909 0.00 0.00 37.11 3.02
7297 7614 4.154015 CGTAGGATGTCTTTGCACATTTCA 59.846 41.667 0.00 0.00 37.11 2.69
7323 7640 1.806623 CGGAGGGAAGAAACGCATAGG 60.807 57.143 0.00 0.00 0.00 2.57
7353 7670 3.670627 GCACAAGTTATTCCAAGGAAGCG 60.671 47.826 7.69 0.00 37.56 4.68
7359 7685 5.168569 TCGACTAGCACAAGTTATTCCAAG 58.831 41.667 0.00 0.00 0.00 3.61
7374 7700 2.159170 AGGAGAAAGCACATCGACTAGC 60.159 50.000 0.00 0.00 0.00 3.42
7376 7702 2.427453 GGAGGAGAAAGCACATCGACTA 59.573 50.000 0.00 0.00 0.00 2.59
7377 7703 1.205893 GGAGGAGAAAGCACATCGACT 59.794 52.381 0.00 0.00 0.00 4.18
7379 7705 0.537188 GGGAGGAGAAAGCACATCGA 59.463 55.000 0.00 0.00 0.00 3.59
7423 7749 0.250901 ACAACTGGACATGGCTGGAC 60.251 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.