AutoCloner

Multiple sequence alignment - TraesCS2D01G403300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G403300	chr2D	100.000	2830	0	0	1	2830	518168080	518170909	0.000000e+00	5227.0
1	TraesCS2D01G403300	chr2D	79.119	613	108	14	1239	1845	518184451	518185049	3.390000e-109	405.0
2	TraesCS2D01G403300	chr2D	78.547	592	87	21	1243	1822	518074412	518074975	1.250000e-93	353.0
3	TraesCS2D01G403300	chr2D	75.781	640	108	27	559	1166	518073793	518074417	2.150000e-71	279.0
4	TraesCS2D01G403300	chr2D	76.533	473	85	18	712	1168	518183866	518184328	4.710000e-58	235.0
5	TraesCS2D01G403300	chr2D	90.164	61	5	1	2022	2081	78503584	78503524	8.410000e-11	78.7
6	TraesCS2D01G403300	chr2D	84.375	64	9	1	197	260	249891533	249891471	8.470000e-06	62.1
7	TraesCS2D01G403300	chr2A	92.687	2393	124	19	1	2349	662231440	662233825	0.000000e+00	3402.0
8	TraesCS2D01G403300	chr2A	95.550	427	19	0	2342	2768	662249329	662249755	0.000000e+00	684.0
9	TraesCS2D01G403300	chr2A	79.935	618	96	19	1239	1845	662317500	662318100	2.010000e-116	429.0
10	TraesCS2D01G403300	chr2A	77.281	581	88	24	1257	1822	661945232	661945783	4.580000e-78	302.0
11	TraesCS2D01G403300	chr2A	77.704	453	77	16	704	1142	661944757	661945199	3.620000e-64	255.0
12	TraesCS2D01G403300	chr2A	75.789	475	86	20	712	1168	662316762	662317225	2.210000e-51	213.0
13	TraesCS2D01G403300	chr2B	92.933	1231	70	12	1549	2766	610116385	610117611	0.000000e+00	1775.0
14	TraesCS2D01G403300	chr2B	92.231	1197	54	17	381	1551	610115079	610116262	0.000000e+00	1659.0
15	TraesCS2D01G403300	chr2B	94.057	387	22	1	1	386	610113869	610114255	1.130000e-163	586.0
16	TraesCS2D01G403300	chr2B	79.639	609	98	19	1239	1839	610277822	610278412	5.640000e-112	414.0
17	TraesCS2D01G403300	chr2B	78.185	573	91	18	1257	1822	610021251	610021796	4.520000e-88	335.0
18	TraesCS2D01G403300	chr2B	78.033	478	79	18	677	1142	610020755	610021218	7.720000e-71	278.0
19	TraesCS2D01G403300	chr2B	76.059	472	91	15	712	1169	610277256	610277719	2.840000e-55	226.0
20	TraesCS2D01G403300	chr2B	86.747	83	10	1	179	260	106777687	106777605	1.080000e-14	91.6
21	TraesCS2D01G403300	chr1B	79.042	167	18	15	2020	2175	400316491	400316651	6.450000e-17	99.0
22	TraesCS2D01G403300	chr1B	86.207	58	6	2	189	245	656520391	656520447	8.470000e-06	62.1
23	TraesCS2D01G403300	chrUn	77.596	183	25	9	2020	2192	351402218	351402394	2.320000e-16	97.1
24	TraesCS2D01G403300	chr5D	76.667	180	26	11	2026	2193	336413574	336413399	5.020000e-13	86.1
25	TraesCS2D01G403300	chr6B	76.166	193	23	12	2017	2192	610952647	610952833	2.340000e-11	80.5
26	TraesCS2D01G403300	chr5A	76.243	181	25	12	110	273	619492431	619492610	2.340000e-11	80.5
27	TraesCS2D01G403300	chr7D	83.117	77	7	5	2119	2193	637388359	637388431	6.540000e-07	65.8
28	TraesCS2D01G403300	chr7D	81.818	77	8	5	2119	2193	637461704	637461776	3.040000e-05	60.2
29	TraesCS2D01G403300	chr4A	83.562	73	8	4	2120	2192	669826872	669826940	6.540000e-07	65.8
30	TraesCS2D01G403300	chr4A	91.489	47	0	4	216	260	612005095	612005051	8.470000e-06	62.1
31	TraesCS2D01G403300	chr4A	82.051	78	6	6	2120	2193	693877450	693877377	3.040000e-05	60.2
32	TraesCS2D01G403300	chr3A	83.099	71	11	1	176	245	61430976	61431046	2.350000e-06	63.9
33	TraesCS2D01G403300	chr1D	81.250	80	9	6	2119	2196	60288112	60288037	3.040000e-05	60.2
34	TraesCS2D01G403300	chr3D	87.755	49	2	3	218	264	64764805	64764851	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G403300	chr2D	518168080	518170909	2829	False	5227.0	5227	100.000000	1	2830	1	chr2D.!!$F1	2829
1	TraesCS2D01G403300	chr2D	518183866	518185049	1183	False	320.0	405	77.826000	712	1845	2	chr2D.!!$F3	1133
2	TraesCS2D01G403300	chr2D	518073793	518074975	1182	False	316.0	353	77.164000	559	1822	2	chr2D.!!$F2	1263
3	TraesCS2D01G403300	chr2A	662231440	662233825	2385	False	3402.0	3402	92.687000	1	2349	1	chr2A.!!$F1	2348
4	TraesCS2D01G403300	chr2A	662316762	662318100	1338	False	321.0	429	77.862000	712	1845	2	chr2A.!!$F4	1133
5	TraesCS2D01G403300	chr2A	661944757	661945783	1026	False	278.5	302	77.492500	704	1822	2	chr2A.!!$F3	1118
6	TraesCS2D01G403300	chr2B	610113869	610117611	3742	False	1340.0	1775	93.073667	1	2766	3	chr2B.!!$F2	2765
7	TraesCS2D01G403300	chr2B	610277256	610278412	1156	False	320.0	414	77.849000	712	1839	2	chr2B.!!$F3	1127
8	TraesCS2D01G403300	chr2B	610020755	610021796	1041	False	306.5	335	78.109000	677	1822	2	chr2B.!!$F1	1145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
449	1288	0.391661	TGCTCCAAGCTCGTGATTCC	60.392	55.0	0.11	0.00	42.97	3.01	F
988	1888	0.734253	CCAGCTCGAGAAGTTCACGG	60.734	60.0	18.75	12.93	31.48	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1694	2980	0.599204	ACATGAAGTCGTCGCGGTTT	60.599	50.0	6.13	0.0	0.0	3.27	R
2809	4108	0.109342	CTGCCCTTTCCTGTGTCTGT	59.891	55.0	0.00	0.0	0.0	3.41	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	8.924511	AACTTCAAACAATCTCCAGAGAATAA	57.075	30.769	0.66	0.00	41.36	1.40
36	37	8.329203	ACTTCAAACAATCTCCAGAGAATAAC	57.671	34.615	0.66	0.00	41.36	1.89
274	276	3.980646	TGACTTGAAACACGGATTTGG	57.019	42.857	0.00	0.00	0.00	3.28
318	320	5.700722	TTAGCAAAGTCTCGTCTAACTCA	57.299	39.130	0.00	0.00	0.00	3.41
379	381	7.201461	CGAAAAATGCCAGAAAAATCTATGTGG	60.201	37.037	0.00	0.00	0.00	4.17
417	1248	6.592870	ACAGAGGGAGTATAACAAAATAGGC	58.407	40.000	0.00	0.00	0.00	3.93
449	1288	0.391661	TGCTCCAAGCTCGTGATTCC	60.392	55.000	0.11	0.00	42.97	3.01
642	1487	6.129088	GCATTAACAACTCAGCTAACTTTTGC	60.129	38.462	0.00	0.00	0.00	3.68
675	1520	3.260884	TGTGGTTCTTTCCTCTATTCGCT	59.739	43.478	0.00	0.00	0.00	4.93
715	1578	7.480542	GTGAGCAACTTACGTATATTTGTTTGG	59.519	37.037	0.00	0.00	0.00	3.28
853	1718	1.229082	TACAGGAGAACACGGGCCT	60.229	57.895	0.84	0.00	0.00	5.19
883	1774	2.423577	ACGCACTAACCAGATTTGTCC	58.576	47.619	0.00	0.00	0.00	4.02
988	1888	0.734253	CCAGCTCGAGAAGTTCACGG	60.734	60.000	18.75	12.93	31.48	4.94
1181	2091	1.153168	AGGTGCATGCCGTCCATAC	60.153	57.895	16.68	4.22	31.47	2.39
1235	2371	4.719369	AGCCAACCTCGTCGCGAC	62.719	66.667	28.96	28.96	0.00	5.19
1562	2836	4.566004	TCAAATACTACCTGTCACAGTGC	58.434	43.478	3.56	0.00	0.00	4.40
2195	3487	4.781087	ACTAAAATGTAGCCACACCCTAGA	59.219	41.667	0.00	0.00	37.54	2.43
2205	3497	2.486191	CCACACCCTAGAGCATGAATCC	60.486	54.545	0.00	0.00	0.00	3.01
2206	3498	2.171237	CACACCCTAGAGCATGAATCCA	59.829	50.000	0.00	0.00	0.00	3.41
2207	3499	3.051581	ACACCCTAGAGCATGAATCCAT	58.948	45.455	0.00	0.00	0.00	3.41
2331	3628	6.020041	GCGATCCCGTAAACTTTAAAGTCTAG	60.020	42.308	20.78	12.26	36.80	2.43
2391	3688	9.875675	AACGAATAGAAATATAGTCTCACGTAC	57.124	33.333	0.00	0.00	32.37	3.67
2395	3692	6.388435	AGAAATATAGTCTCACGTACCACC	57.612	41.667	0.00	0.00	0.00	4.61
2420	3717	9.218440	CCTATGGTTTTGCATTAAAAACTGAAT	57.782	29.630	10.64	6.20	44.51	2.57
2435	3732	6.743575	AAACTGAATAGTGCAAGACATACC	57.256	37.500	0.00	0.00	37.19	2.73
2436	3733	4.433615	ACTGAATAGTGCAAGACATACCG	58.566	43.478	0.00	0.00	35.34	4.02
2473	3770	2.871096	ACGGGATTGCTAAAACCAGA	57.129	45.000	0.00	0.00	29.85	3.86
2501	3798	0.675837	GGGGAGCGGTTTGTTAGACC	60.676	60.000	0.00	0.00	0.00	3.85
2502	3799	0.035739	GGGAGCGGTTTGTTAGACCA	59.964	55.000	0.00	0.00	36.99	4.02
2601	3898	5.163301	GCAGATAGGGGTCAAGAACATTCTA	60.163	44.000	0.00	0.00	36.28	2.10
2623	3920	2.158608	AGTCAACAAGGTGCCTAAAGCT	60.159	45.455	0.00	0.00	44.23	3.74
2640	3937	6.312426	CCTAAAGCTTGCCAAGATAGATATCG	59.688	42.308	9.04	0.00	37.76	2.92
2668	3965	1.377536	GAAGATGTGAAGAGCAGGGC	58.622	55.000	0.00	0.00	0.00	5.19
2737	4036	2.436911	TGATGGATGAGATGACACCAGG	59.563	50.000	0.00	0.00	34.08	4.45
2758	4057	3.491792	GGCGAAACCAAATTGGAAACTCA	60.492	43.478	20.25	0.00	40.96	3.41
2780	4079	3.080647	CCTGGATAAGGTTGCGTCC	57.919	57.895	0.00	0.00	41.74	4.79
2781	4080	0.251916	CCTGGATAAGGTTGCGTCCA	59.748	55.000	0.00	0.00	41.74	4.02
2782	4081	1.339631	CCTGGATAAGGTTGCGTCCAA	60.340	52.381	0.00	0.00	41.74	3.53
2793	4092	3.889196	TTGCGTCCAACAAGTTGTATC	57.111	42.857	9.37	0.00	38.85	2.24
2794	4093	3.120321	TGCGTCCAACAAGTTGTATCT	57.880	42.857	9.37	0.00	38.85	1.98
2795	4094	4.260139	TGCGTCCAACAAGTTGTATCTA	57.740	40.909	9.37	0.00	38.85	1.98
2796	4095	4.633175	TGCGTCCAACAAGTTGTATCTAA	58.367	39.130	9.37	0.00	38.85	2.10
2797	4096	5.057819	TGCGTCCAACAAGTTGTATCTAAA	58.942	37.500	9.37	0.00	38.85	1.85
2798	4097	5.527951	TGCGTCCAACAAGTTGTATCTAAAA	59.472	36.000	9.37	0.00	38.85	1.52
2799	4098	5.849604	GCGTCCAACAAGTTGTATCTAAAAC	59.150	40.000	9.37	0.99	38.85	2.43
2800	4099	6.512091	GCGTCCAACAAGTTGTATCTAAAACA	60.512	38.462	9.37	0.00	38.85	2.83
2801	4100	7.411274	CGTCCAACAAGTTGTATCTAAAACAA	58.589	34.615	9.37	0.00	38.85	2.83
2812	4111	8.572828	TTGTATCTAAAACAACAATTGCACAG	57.427	30.769	5.05	0.00	32.07	3.66
2813	4112	7.935520	TGTATCTAAAACAACAATTGCACAGA	58.064	30.769	5.05	0.00	0.00	3.41
2814	4113	7.860373	TGTATCTAAAACAACAATTGCACAGAC	59.140	33.333	5.05	0.00	0.00	3.51
2815	4114	6.201226	TCTAAAACAACAATTGCACAGACA	57.799	33.333	5.05	0.00	0.00	3.41
2816	4115	6.033341	TCTAAAACAACAATTGCACAGACAC	58.967	36.000	5.05	0.00	0.00	3.67
2817	4116	3.865011	AACAACAATTGCACAGACACA	57.135	38.095	5.05	0.00	0.00	3.72
2818	4117	3.425577	ACAACAATTGCACAGACACAG	57.574	42.857	5.05	0.00	0.00	3.66
2819	4118	2.099592	ACAACAATTGCACAGACACAGG	59.900	45.455	5.05	0.00	0.00	4.00
2820	4119	2.346766	ACAATTGCACAGACACAGGA	57.653	45.000	5.05	0.00	0.00	3.86
2821	4120	2.653726	ACAATTGCACAGACACAGGAA	58.346	42.857	5.05	0.00	0.00	3.36
2822	4121	3.023119	ACAATTGCACAGACACAGGAAA	58.977	40.909	5.05	0.00	0.00	3.13
2823	4122	3.067180	ACAATTGCACAGACACAGGAAAG	59.933	43.478	5.05	0.00	0.00	2.62
2824	4123	1.679139	TTGCACAGACACAGGAAAGG	58.321	50.000	0.00	0.00	0.00	3.11
2825	4124	0.179020	TGCACAGACACAGGAAAGGG	60.179	55.000	0.00	0.00	0.00	3.95
2826	4125	1.518903	GCACAGACACAGGAAAGGGC	61.519	60.000	0.00	0.00	0.00	5.19
2827	4126	0.179020	CACAGACACAGGAAAGGGCA	60.179	55.000	0.00	0.00	0.00	5.36
2828	4127	0.109342	ACAGACACAGGAAAGGGCAG	59.891	55.000	0.00	0.00	0.00	4.85
2829	4128	0.397941	CAGACACAGGAAAGGGCAGA	59.602	55.000	0.00	0.00	0.00	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	3.628942	GGTCCCGTTGTCAAACTAAAAGT	59.371	43.478	0.00	0.00	33.87	2.66
36	37	3.004002	GGGTCCCGTTGTCAAACTAAAAG	59.996	47.826	0.00	0.00	33.87	2.27
42	43	0.179040	TCTGGGTCCCGTTGTCAAAC	60.179	55.000	2.65	0.00	0.00	2.93
260	262	4.143179	CGAGACTTACCAAATCCGTGTTTC	60.143	45.833	0.00	0.00	0.00	2.78
274	276	8.013378	GCTAATTCTCATCTAGACGAGACTTAC	58.987	40.741	17.74	12.80	37.99	2.34
379	381	3.391296	TCCCTCTGTTCCATAATGTAGCC	59.609	47.826	0.00	0.00	0.00	3.93
417	1248	0.249868	TGGAGCAGTGACCAAAGTCG	60.250	55.000	6.96	0.00	46.74	4.18
449	1288	2.747446	CAGTTATCCAGGTTTTGACCCG	59.253	50.000	0.00	0.00	0.00	5.28
642	1487	7.995488	AGAGGAAAGAACCACATTATAGAATGG	59.005	37.037	14.27	1.77	45.83	3.16
675	1520	5.376625	AGTTGCTCACCTCATTTGTCTTTA	58.623	37.500	0.00	0.00	0.00	1.85
715	1578	1.269517	CCAGGAAGATAGCTGCTCGTC	60.270	57.143	4.91	6.13	0.00	4.20
783	1648	2.411547	CGCTTTTCATCTGTGGAACGAC	60.412	50.000	0.00	0.00	42.39	4.34
853	1718	2.094675	GGTTAGTGCGTACAGGGAGTA	58.905	52.381	6.38	0.00	0.00	2.59
883	1774	5.215227	CGTTACGTACGTGCTATAACATG	57.785	43.478	30.25	10.56	45.14	3.21
988	1888	2.969238	CATCATCTGGACGGCCGC	60.969	66.667	28.58	18.35	36.79	6.53
1181	2091	0.038892	GAAGCACCACACCAAGCATG	60.039	55.000	0.00	0.00	0.00	4.06
1235	2371	2.462456	TACAGCTCCTGCAAGAACAG	57.538	50.000	0.00	0.00	42.74	3.16
1327	2471	2.080693	TCATTGTTATGTGTCACCGCC	58.919	47.619	0.00	0.00	33.34	6.13
1331	2475	3.743911	TCGGTGTCATTGTTATGTGTCAC	59.256	43.478	0.00	0.00	33.34	3.67
1487	2631	1.135315	CGCTGGCGAAGACCATTTG	59.865	57.895	9.51	0.00	39.54	2.32
1531	2678	4.020485	ACAGGTAGTATTTGAGGGTGTGTC	60.020	45.833	0.00	0.00	0.00	3.67
1562	2836	1.135315	CACTGAAACATCCCGGCAATG	60.135	52.381	12.17	12.17	0.00	2.82
1694	2980	0.599204	ACATGAAGTCGTCGCGGTTT	60.599	50.000	6.13	0.00	0.00	3.27
1848	3134	1.719780	CGTAGAAACAAGTCAGGTCGC	59.280	52.381	0.00	0.00	0.00	5.19
1948	3234	1.540146	GCGAACCAGTGGCCAAATTTT	60.540	47.619	7.24	0.00	0.00	1.82
2136	3428	5.128827	ACTTAACCAAGTCTCAGTCAAGTGA	59.871	40.000	0.00	0.00	41.25	3.41
2294	3591	4.667519	ACGGGATCGCTAAATCTTAGTT	57.332	40.909	8.28	0.00	40.63	2.24
2300	3597	5.729974	AAAGTTTACGGGATCGCTAAATC	57.270	39.130	8.28	1.95	40.63	2.17
2367	3664	8.501580	TGGTACGTGAGACTATATTTCTATTCG	58.498	37.037	0.00	0.00	0.00	3.34
2402	3699	8.654230	TTGCACTATTCAGTTTTTAATGCAAA	57.346	26.923	5.42	0.00	33.40	3.68
2411	3708	6.128282	CGGTATGTCTTGCACTATTCAGTTTT	60.128	38.462	0.00	0.00	30.46	2.43
2420	3717	1.136305	GAGCCGGTATGTCTTGCACTA	59.864	52.381	1.90	0.00	0.00	2.74
2435	3732	5.406175	TCCCGTTTATAATTTTATCGAGCCG	59.594	40.000	0.00	0.00	0.00	5.52
2436	3733	6.790285	TCCCGTTTATAATTTTATCGAGCC	57.210	37.500	0.00	0.00	0.00	4.70
2473	3770	1.338136	AACCGCTCCCCTCATCGAAT	61.338	55.000	0.00	0.00	0.00	3.34
2501	3798	2.847327	AGACATGTCTTCCCACACTG	57.153	50.000	22.89	0.00	36.31	3.66
2502	3799	2.231478	CGTAGACATGTCTTCCCACACT	59.769	50.000	32.14	8.60	40.93	3.55
2601	3898	2.623416	GCTTTAGGCACCTTGTTGACTT	59.377	45.455	0.00	0.00	35.90	3.01
2623	3920	6.450545	CAGTCTTCGATATCTATCTTGGCAA	58.549	40.000	0.00	0.00	0.00	4.52
2640	3937	4.502962	CTCTTCACATCTTCCCAGTCTTC	58.497	47.826	0.00	0.00	0.00	2.87
2691	3988	8.824781	CACATGGTAAAAGATCTAGTCATTCAG	58.175	37.037	0.00	0.00	0.00	3.02
2737	4036	3.712187	TGAGTTTCCAATTTGGTTTCGC	58.288	40.909	14.98	8.68	39.03	4.70
2766	4065	2.812011	ACTTGTTGGACGCAACCTTATC	59.188	45.455	3.86	0.00	34.37	1.75
2767	4066	2.858745	ACTTGTTGGACGCAACCTTAT	58.141	42.857	3.86	0.00	34.37	1.73
2768	4067	2.335316	ACTTGTTGGACGCAACCTTA	57.665	45.000	3.86	0.00	34.37	2.69
2769	4068	1.134175	CAACTTGTTGGACGCAACCTT	59.866	47.619	5.65	0.00	34.37	3.50
2770	4069	0.738389	CAACTTGTTGGACGCAACCT	59.262	50.000	5.65	0.00	34.37	3.50
2771	4070	0.454196	ACAACTTGTTGGACGCAACC	59.546	50.000	16.48	0.00	34.37	3.77
2772	4071	3.250040	AGATACAACTTGTTGGACGCAAC	59.750	43.478	16.48	0.00	35.75	4.17
2773	4072	3.472652	AGATACAACTTGTTGGACGCAA	58.527	40.909	16.48	0.00	0.00	4.85
2774	4073	3.120321	AGATACAACTTGTTGGACGCA	57.880	42.857	16.48	0.00	0.00	5.24
2775	4074	5.600908	TTTAGATACAACTTGTTGGACGC	57.399	39.130	16.48	5.60	0.00	5.19
2776	4075	6.950545	TGTTTTAGATACAACTTGTTGGACG	58.049	36.000	16.48	0.00	0.00	4.79
2787	4086	8.409371	TCTGTGCAATTGTTGTTTTAGATACAA	58.591	29.630	7.40	0.00	35.25	2.41
2788	4087	7.860373	GTCTGTGCAATTGTTGTTTTAGATACA	59.140	33.333	7.40	0.00	0.00	2.29
2789	4088	7.860373	TGTCTGTGCAATTGTTGTTTTAGATAC	59.140	33.333	7.40	0.00	0.00	2.24
2790	4089	7.860373	GTGTCTGTGCAATTGTTGTTTTAGATA	59.140	33.333	7.40	0.00	0.00	1.98
2791	4090	6.697019	GTGTCTGTGCAATTGTTGTTTTAGAT	59.303	34.615	7.40	0.00	0.00	1.98
2792	4091	6.033341	GTGTCTGTGCAATTGTTGTTTTAGA	58.967	36.000	7.40	0.00	0.00	2.10
2793	4092	5.804473	TGTGTCTGTGCAATTGTTGTTTTAG	59.196	36.000	7.40	0.00	0.00	1.85
2794	4093	5.714047	TGTGTCTGTGCAATTGTTGTTTTA	58.286	33.333	7.40	0.00	0.00	1.52
2795	4094	4.564041	TGTGTCTGTGCAATTGTTGTTTT	58.436	34.783	7.40	0.00	0.00	2.43
2796	4095	4.175516	CTGTGTCTGTGCAATTGTTGTTT	58.824	39.130	7.40	0.00	0.00	2.83
2797	4096	3.429272	CCTGTGTCTGTGCAATTGTTGTT	60.429	43.478	7.40	0.00	0.00	2.83
2798	4097	2.099592	CCTGTGTCTGTGCAATTGTTGT	59.900	45.455	7.40	0.00	0.00	3.32
2799	4098	2.358582	TCCTGTGTCTGTGCAATTGTTG	59.641	45.455	7.40	0.00	0.00	3.33
2800	4099	2.653726	TCCTGTGTCTGTGCAATTGTT	58.346	42.857	7.40	0.00	0.00	2.83
2801	4100	2.346766	TCCTGTGTCTGTGCAATTGT	57.653	45.000	7.40	0.00	0.00	2.71
2802	4101	3.551454	CCTTTCCTGTGTCTGTGCAATTG	60.551	47.826	0.00	0.00	0.00	2.32
2803	4102	2.624838	CCTTTCCTGTGTCTGTGCAATT	59.375	45.455	0.00	0.00	0.00	2.32
2804	4103	2.233271	CCTTTCCTGTGTCTGTGCAAT	58.767	47.619	0.00	0.00	0.00	3.56
2805	4104	1.679139	CCTTTCCTGTGTCTGTGCAA	58.321	50.000	0.00	0.00	0.00	4.08
2806	4105	0.179020	CCCTTTCCTGTGTCTGTGCA	60.179	55.000	0.00	0.00	0.00	4.57
2807	4106	1.518903	GCCCTTTCCTGTGTCTGTGC	61.519	60.000	0.00	0.00	0.00	4.57
2808	4107	0.179020	TGCCCTTTCCTGTGTCTGTG	60.179	55.000	0.00	0.00	0.00	3.66
2809	4108	0.109342	CTGCCCTTTCCTGTGTCTGT	59.891	55.000	0.00	0.00	0.00	3.41
2810	4109	0.397941	TCTGCCCTTTCCTGTGTCTG	59.602	55.000	0.00	0.00	0.00	3.51
2811	4110	2.854253	TCTGCCCTTTCCTGTGTCT	58.146	52.632	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.