Multiple sequence alignment - TraesCS2D01G403200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G403200 chr2D 100.000 6640 0 0 1 6640 518069344 518075983 0.000000e+00 12262.0
1 TraesCS2D01G403200 chr2D 90.187 428 39 3 1925 2352 82373359 82372935 7.520000e-154 555.0
2 TraesCS2D01G403200 chr2D 81.950 482 53 21 872 1332 518165957 518166425 1.750000e-100 377.0
3 TraesCS2D01G403200 chr2D 82.420 438 57 8 3214 3649 304268020 304268439 1.360000e-96 364.0
4 TraesCS2D01G403200 chr2D 78.475 590 91 18 5069 5632 518169322 518169901 2.950000e-93 353.0
5 TraesCS2D01G403200 chr2D 75.819 641 106 29 4450 5074 518168638 518169245 5.070000e-71 279.0
6 TraesCS2D01G403200 chr2D 75.767 619 109 20 5069 5662 518184455 518185057 2.360000e-69 274.0
7 TraesCS2D01G403200 chr2D 76.890 463 89 14 4625 5074 518183869 518184326 5.140000e-61 246.0
8 TraesCS2D01G403200 chr2D 92.174 115 6 2 770 881 4194175 4194061 6.890000e-35 159.0
9 TraesCS2D01G403200 chr2D 90.179 112 9 2 770 880 534132854 534132744 1.930000e-30 145.0
10 TraesCS2D01G403200 chr2D 85.470 117 12 4 1808 1922 633073990 633073877 4.210000e-22 117.0
11 TraesCS2D01G403200 chr2D 84.158 101 14 2 3460 3560 59145291 59145193 5.480000e-16 97.1
12 TraesCS2D01G403200 chr2A 92.303 1559 80 22 4419 5963 661944562 661946094 0.000000e+00 2178.0
13 TraesCS2D01G403200 chr2A 89.698 796 24 22 873 1648 661939979 661940736 0.000000e+00 963.0
14 TraesCS2D01G403200 chr2A 89.971 678 56 10 5972 6640 713461403 713460729 0.000000e+00 865.0
15 TraesCS2D01G403200 chr2A 88.320 488 21 13 39 524 661939385 661939838 2.710000e-153 553.0
16 TraesCS2D01G403200 chr2A 79.959 489 65 23 872 1341 662229258 662229732 4.960000e-86 329.0
17 TraesCS2D01G403200 chr2A 77.665 591 94 18 5069 5632 662232713 662233292 6.420000e-85 326.0
18 TraesCS2D01G403200 chr2A 80.965 373 37 15 963 1332 662315946 662316287 1.420000e-66 265.0
19 TraesCS2D01G403200 chr2A 75.243 618 114 21 5069 5661 662317504 662318107 2.380000e-64 257.0
20 TraesCS2D01G403200 chr2A 80.781 333 59 5 2884 3215 54446323 54445995 8.540000e-64 255.0
21 TraesCS2D01G403200 chr2A 96.667 150 5 0 564 713 661939836 661939985 3.980000e-62 250.0
22 TraesCS2D01G403200 chr2A 77.149 477 77 20 4626 5074 662232164 662232636 1.430000e-61 248.0
23 TraesCS2D01G403200 chr2A 80.428 327 59 4 2892 3215 41606364 41606040 1.850000e-60 244.0
24 TraesCS2D01G403200 chr2A 75.914 465 91 17 4625 5074 662316765 662317223 1.120000e-52 219.0
25 TraesCS2D01G403200 chr2A 78.916 166 33 2 3481 3645 91140170 91140334 1.960000e-20 111.0
26 TraesCS2D01G403200 chr2A 86.275 102 13 1 1649 1749 661940901 661941002 7.040000e-20 110.0
27 TraesCS2D01G403200 chr2B 94.165 1371 63 7 4460 5828 610020637 610021992 0.000000e+00 2073.0
28 TraesCS2D01G403200 chr2B 87.584 1780 172 23 1812 3562 610017961 610019720 0.000000e+00 2017.0
29 TraesCS2D01G403200 chr2B 91.058 794 28 15 873 1648 610017041 610017809 0.000000e+00 1033.0
30 TraesCS2D01G403200 chr2B 87.472 902 62 28 3614 4476 610019706 610020595 0.000000e+00 992.0
31 TraesCS2D01G403200 chr2B 81.568 472 51 23 872 1324 610111735 610112189 2.280000e-94 357.0
32 TraesCS2D01G403200 chr2B 85.503 338 40 4 3214 3549 373112370 373112700 1.770000e-90 344.0
33 TraesCS2D01G403200 chr2B 82.308 390 54 11 3222 3604 249910310 249910691 2.310000e-84 324.0
34 TraesCS2D01G403200 chr2B 82.210 371 34 15 941 1310 610275449 610275788 2.340000e-74 291.0
35 TraesCS2D01G403200 chr2B 82.337 368 22 13 78 423 610016462 610016808 5.070000e-71 279.0
36 TraesCS2D01G403200 chr2B 86.347 271 14 8 445 713 610016798 610017047 2.360000e-69 274.0
37 TraesCS2D01G403200 chr2B 75.728 618 109 18 5069 5662 610277826 610278426 8.480000e-69 272.0
38 TraesCS2D01G403200 chr2B 77.970 463 75 19 4626 5074 610115430 610115879 1.420000e-66 265.0
39 TraesCS2D01G403200 chr2B 77.149 442 77 17 4625 5050 610277259 610277692 1.110000e-57 235.0
40 TraesCS2D01G403200 chr2B 91.667 156 13 0 5808 5963 610022155 610022310 4.030000e-52 217.0
41 TraesCS2D01G403200 chr2B 91.304 115 3 3 1657 1770 610017856 610017964 4.150000e-32 150.0
42 TraesCS2D01G403200 chr4D 94.478 670 36 1 5972 6640 506746131 506745462 0.000000e+00 1031.0
43 TraesCS2D01G403200 chr4D 91.533 437 34 3 1921 2355 337089422 337089857 3.430000e-167 599.0
44 TraesCS2D01G403200 chr4D 90.183 438 38 5 1916 2352 253866173 253866606 3.480000e-157 566.0
45 TraesCS2D01G403200 chr4D 93.469 245 15 1 5972 6215 506741616 506741372 4.890000e-96 363.0
46 TraesCS2D01G403200 chr4D 79.530 298 57 4 2917 3212 392217214 392217509 6.750000e-50 209.0
47 TraesCS2D01G403200 chr5D 93.393 666 43 1 5972 6636 130304491 130303826 0.000000e+00 985.0
48 TraesCS2D01G403200 chr5D 90.249 441 39 4 1914 2352 530821987 530821549 2.080000e-159 573.0
49 TraesCS2D01G403200 chr5D 91.892 111 7 2 765 874 357446584 357446693 3.210000e-33 154.0
50 TraesCS2D01G403200 chr5D 92.523 107 7 1 770 875 434565435 434565329 1.150000e-32 152.0
51 TraesCS2D01G403200 chr5D 84.921 126 16 2 1800 1922 356971258 356971383 2.510000e-24 124.0
52 TraesCS2D01G403200 chr5D 97.059 34 1 0 3618 3651 9501816 9501783 2.590000e-04 58.4
53 TraesCS2D01G403200 chr6B 91.467 668 44 5 5972 6637 593716178 593716834 0.000000e+00 905.0
54 TraesCS2D01G403200 chr6B 82.306 373 58 8 3214 3581 614299545 614299914 3.860000e-82 316.0
55 TraesCS2D01G403200 chr6B 91.892 111 7 2 1814 1922 63204347 63204457 3.210000e-33 154.0
56 TraesCS2D01G403200 chr6B 91.892 111 7 2 1814 1922 63234863 63234973 3.210000e-33 154.0
57 TraesCS2D01G403200 chr6B 80.892 157 25 5 1127 1282 493325208 493325056 1.170000e-22 119.0
58 TraesCS2D01G403200 chr7B 91.071 672 52 6 5976 6640 481851335 481850665 0.000000e+00 902.0
59 TraesCS2D01G403200 chr7B 83.161 677 96 9 5968 6640 677918006 677917344 2.650000e-168 603.0
60 TraesCS2D01G403200 chr7B 92.523 107 7 1 770 875 466267690 466267796 1.150000e-32 152.0
61 TraesCS2D01G403200 chr1D 90.118 678 57 8 5967 6637 477491702 477492376 0.000000e+00 872.0
62 TraesCS2D01G403200 chr1D 86.265 415 51 5 3215 3625 104576130 104575718 4.720000e-121 446.0
63 TraesCS2D01G403200 chr1D 87.556 225 27 1 2984 3207 104576805 104576581 6.610000e-65 259.0
64 TraesCS2D01G403200 chr5B 89.778 675 58 9 5971 6637 598157141 598157812 0.000000e+00 854.0
65 TraesCS2D01G403200 chr7D 90.667 600 46 8 6048 6640 578714176 578713580 0.000000e+00 789.0
66 TraesCS2D01G403200 chr7D 81.587 668 87 23 5981 6634 32013798 32013153 2.740000e-143 520.0
67 TraesCS2D01G403200 chr7D 85.876 177 22 2 707 880 33814012 33814188 1.140000e-42 185.0
68 TraesCS2D01G403200 chr7D 82.967 182 10 4 715 875 508475760 508475941 1.930000e-30 145.0
69 TraesCS2D01G403200 chr3A 91.917 433 33 2 1921 2352 691315483 691315052 7.370000e-169 604.0
70 TraesCS2D01G403200 chr3A 90.419 167 16 0 2355 2521 198839285 198839119 3.120000e-53 220.0
71 TraesCS2D01G403200 chr7A 90.278 432 37 2 1921 2352 259334048 259333622 1.620000e-155 560.0
72 TraesCS2D01G403200 chr7A 91.262 412 34 2 1944 2353 692314994 692315405 1.620000e-155 560.0
73 TraesCS2D01G403200 chr7A 79.268 410 73 10 3222 3627 731973259 731972858 6.560000e-70 276.0
74 TraesCS2D01G403200 chr7A 91.515 165 14 0 2355 2519 39430077 39429913 1.860000e-55 228.0
75 TraesCS2D01G403200 chr7A 90.286 175 15 2 2346 2519 479838044 479838217 1.860000e-55 228.0
76 TraesCS2D01G403200 chr7A 91.509 106 9 0 770 875 669296620 669296725 5.370000e-31 147.0
77 TraesCS2D01G403200 chr4A 88.496 452 45 7 1921 2369 702047978 702047531 2.110000e-149 540.0
78 TraesCS2D01G403200 chr4A 88.701 177 17 3 2346 2521 610429924 610430098 5.220000e-51 213.0
79 TraesCS2D01G403200 chr1B 82.014 417 65 10 3235 3645 439097689 439097277 4.930000e-91 346.0
80 TraesCS2D01G403200 chr1B 87.826 230 27 1 2984 3212 161986959 161987188 1.100000e-67 268.0
81 TraesCS2D01G403200 chr1B 81.040 327 50 11 2892 3212 590520249 590520569 3.980000e-62 250.0
82 TraesCS2D01G403200 chr1B 92.105 114 8 1 770 882 32368178 32368291 6.890000e-35 159.0
83 TraesCS2D01G403200 chr1B 90.179 112 9 2 766 876 12755712 12755822 1.930000e-30 145.0
84 TraesCS2D01G403200 chr3D 84.706 340 48 4 3214 3551 594175314 594175651 2.970000e-88 337.0
85 TraesCS2D01G403200 chr3D 81.651 327 51 9 2894 3215 5415063 5414741 5.110000e-66 263.0
86 TraesCS2D01G403200 chr6A 82.804 378 61 3 3230 3604 407076572 407076196 1.070000e-87 335.0
87 TraesCS2D01G403200 chr6A 79.054 444 70 8 3222 3652 597685529 597685096 3.920000e-72 283.0
88 TraesCS2D01G403200 chr1A 85.652 230 32 1 2984 3212 107468664 107468893 2.390000e-59 241.0
89 TraesCS2D01G403200 chr1A 89.266 177 17 2 2346 2521 314952206 314952381 3.120000e-53 220.0
90 TraesCS2D01G403200 chr1A 89.820 167 17 0 2355 2521 37395148 37394982 1.450000e-51 215.0
91 TraesCS2D01G403200 chr1A 84.685 111 14 3 1812 1922 513574217 513574110 2.530000e-19 108.0
92 TraesCS2D01G403200 chr5A 88.701 177 18 2 2346 2521 581490460 581490635 1.450000e-51 215.0
93 TraesCS2D01G403200 chr5A 77.000 200 31 9 3460 3647 552319368 552319172 4.240000e-17 100.0
94 TraesCS2D01G403200 chr6D 88.136 177 19 2 2346 2521 29245249 29245074 6.750000e-50 209.0
95 TraesCS2D01G403200 chr6D 80.586 273 45 7 3384 3651 451766538 451766269 3.140000e-48 204.0
96 TraesCS2D01G403200 chr6D 82.166 157 23 5 1127 1282 328982895 328982743 5.400000e-26 130.0
97 TraesCS2D01G403200 chr6D 78.626 131 26 2 3434 3563 385168874 385168745 1.190000e-12 86.1
98 TraesCS2D01G403200 chr6D 100.000 28 0 0 3618 3645 382793179 382793152 1.200000e-02 52.8
99 TraesCS2D01G403200 chrUn 91.892 111 6 3 1814 1922 76775105 76775214 1.150000e-32 152.0
100 TraesCS2D01G403200 chrUn 91.892 111 6 3 1814 1922 347687296 347687405 1.150000e-32 152.0
101 TraesCS2D01G403200 chr4B 88.525 122 12 2 1803 1922 481495258 481495137 5.370000e-31 147.0
102 TraesCS2D01G403200 chr3B 95.122 41 1 1 2885 2925 758619196 758619157 5.560000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G403200 chr2D 518069344 518075983 6639 False 12262.000000 12262 100.000000 1 6640 1 chr2D.!!$F2 6639
1 TraesCS2D01G403200 chr2D 518165957 518169901 3944 False 336.333333 377 78.748000 872 5632 3 chr2D.!!$F3 4760
2 TraesCS2D01G403200 chr2D 518183869 518185057 1188 False 260.000000 274 76.328500 4625 5662 2 chr2D.!!$F4 1037
3 TraesCS2D01G403200 chr2A 713460729 713461403 674 True 865.000000 865 89.971000 5972 6640 1 chr2A.!!$R3 668
4 TraesCS2D01G403200 chr2A 661939385 661946094 6709 False 810.800000 2178 90.652600 39 5963 5 chr2A.!!$F2 5924
5 TraesCS2D01G403200 chr2A 662229258 662233292 4034 False 301.000000 329 78.257667 872 5632 3 chr2A.!!$F3 4760
6 TraesCS2D01G403200 chr2A 662315946 662318107 2161 False 247.000000 265 77.374000 963 5661 3 chr2A.!!$F4 4698
7 TraesCS2D01G403200 chr2B 610016462 610022310 5848 False 879.375000 2073 88.991750 78 5963 8 chr2B.!!$F3 5885
8 TraesCS2D01G403200 chr2B 610111735 610115879 4144 False 311.000000 357 79.769000 872 5074 2 chr2B.!!$F4 4202
9 TraesCS2D01G403200 chr2B 610275449 610278426 2977 False 266.000000 291 78.362333 941 5662 3 chr2B.!!$F5 4721
10 TraesCS2D01G403200 chr4D 506741372 506746131 4759 True 697.000000 1031 93.973500 5972 6640 2 chr4D.!!$R1 668
11 TraesCS2D01G403200 chr5D 130303826 130304491 665 True 985.000000 985 93.393000 5972 6636 1 chr5D.!!$R2 664
12 TraesCS2D01G403200 chr6B 593716178 593716834 656 False 905.000000 905 91.467000 5972 6637 1 chr6B.!!$F3 665
13 TraesCS2D01G403200 chr7B 481850665 481851335 670 True 902.000000 902 91.071000 5976 6640 1 chr7B.!!$R1 664
14 TraesCS2D01G403200 chr7B 677917344 677918006 662 True 603.000000 603 83.161000 5968 6640 1 chr7B.!!$R2 672
15 TraesCS2D01G403200 chr1D 477491702 477492376 674 False 872.000000 872 90.118000 5967 6637 1 chr1D.!!$F1 670
16 TraesCS2D01G403200 chr1D 104575718 104576805 1087 True 352.500000 446 86.910500 2984 3625 2 chr1D.!!$R1 641
17 TraesCS2D01G403200 chr5B 598157141 598157812 671 False 854.000000 854 89.778000 5971 6637 1 chr5B.!!$F1 666
18 TraesCS2D01G403200 chr7D 578713580 578714176 596 True 789.000000 789 90.667000 6048 6640 1 chr7D.!!$R2 592
19 TraesCS2D01G403200 chr7D 32013153 32013798 645 True 520.000000 520 81.587000 5981 6634 1 chr7D.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.041839 GCGCTTGTTCACAGTGTCAG 60.042 55.0 0.00 0.00 0.00 3.51 F
549 618 0.107508 TACGTAGTACTCCGGCAGCT 60.108 55.0 12.74 0.00 45.11 4.24 F
551 620 0.587285 CGTAGTACTCCGGCAGCTAG 59.413 60.0 0.00 0.00 0.00 3.42 F
746 817 0.652592 AGCGCGCTACAGCAAAATAG 59.347 50.0 35.79 0.00 42.21 1.73 F
2404 3884 0.850100 TGTTTCCATGTGGAGGTGGT 59.150 50.0 1.49 0.00 46.36 4.16 F
3131 5498 0.250553 CGCCCCTCAAAGTGTTGGTA 60.251 55.0 0.00 0.00 35.29 3.25 F
3388 6292 0.687354 GCAGAGGGAAGTGGAGTGAA 59.313 55.0 0.00 0.00 0.00 3.18 F
3571 6488 1.021968 GGTTTGAGGCGTCTGTTTGT 58.978 50.0 8.06 0.00 0.00 2.83 F
5246 12447 0.250209 CCATGCTAGCCTCGATGCTT 60.250 55.0 20.46 5.33 42.75 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 2933 0.174162 CCCAGTTGCTATGCTTTGCC 59.826 55.000 3.74 0.00 0.00 4.52 R
2522 4002 0.320374 CGCCACCAGAGTACTTTGGA 59.680 55.000 33.04 0.00 37.89 3.53 R
2555 4045 3.689161 GCATGGCTAGTTCAACACATACA 59.311 43.478 0.00 0.00 0.00 2.29 R
2746 4350 1.878102 GCAAGAGCTTCGAGGGTTCAA 60.878 52.381 0.00 0.00 37.91 2.69 R
3389 6293 0.463833 CCGGATCAAACCCTAGCCAC 60.464 60.000 0.00 0.00 0.00 5.01 R
4621 11455 0.318784 AAACTGAGCTGGTCGTCGAC 60.319 55.000 17.16 17.16 0.00 4.20 R
4837 11719 0.594796 CCCACACTGCGCAAAGAAAC 60.595 55.000 13.05 0.00 0.00 2.78 R
5411 12620 0.233590 CCGAAAATCAACGACACGCA 59.766 50.000 0.00 0.00 0.00 5.24 R
6468 13904 2.819608 TGAGCTTGGAATACTGCAAACC 59.180 45.455 0.00 0.00 31.84 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.264574 GAGCCTGTTGTTATGGGCA 57.735 52.632 5.62 0.00 46.23 5.36
19 20 1.544724 GAGCCTGTTGTTATGGGCAA 58.455 50.000 5.62 0.00 46.23 4.52
20 21 1.474077 GAGCCTGTTGTTATGGGCAAG 59.526 52.381 5.62 0.00 46.23 4.01
21 22 1.075374 AGCCTGTTGTTATGGGCAAGA 59.925 47.619 5.62 0.00 46.23 3.02
22 23 1.892474 GCCTGTTGTTATGGGCAAGAA 59.108 47.619 0.00 0.00 43.59 2.52
23 24 2.298729 GCCTGTTGTTATGGGCAAGAAA 59.701 45.455 0.00 0.00 43.59 2.52
24 25 3.055891 GCCTGTTGTTATGGGCAAGAAAT 60.056 43.478 0.00 0.00 43.59 2.17
25 26 4.497300 CCTGTTGTTATGGGCAAGAAATG 58.503 43.478 0.00 0.00 0.00 2.32
36 37 2.678471 CAAGAAATGCCCATTGGACC 57.322 50.000 3.62 0.00 0.00 4.46
37 38 2.181975 CAAGAAATGCCCATTGGACCT 58.818 47.619 3.62 0.00 0.00 3.85
38 39 2.149973 AGAAATGCCCATTGGACCTC 57.850 50.000 3.62 0.00 0.00 3.85
39 40 1.114627 GAAATGCCCATTGGACCTCC 58.885 55.000 3.62 0.00 0.00 4.30
40 41 0.325577 AAATGCCCATTGGACCTCCC 60.326 55.000 3.62 0.00 34.29 4.30
64 65 1.668919 CGAATGCAGTCACGTACCTGT 60.669 52.381 15.31 0.00 0.00 4.00
65 66 1.726791 GAATGCAGTCACGTACCTGTG 59.273 52.381 9.72 0.00 41.28 3.66
66 67 0.679505 ATGCAGTCACGTACCTGTGT 59.320 50.000 13.34 2.64 40.74 3.72
67 68 1.320507 TGCAGTCACGTACCTGTGTA 58.679 50.000 13.34 1.27 40.74 2.90
68 69 1.001048 TGCAGTCACGTACCTGTGTAC 60.001 52.381 13.34 0.00 43.24 2.90
145 146 4.493747 ACGAAGTAGCGAGCGGCC 62.494 66.667 0.00 0.00 41.94 6.13
147 148 4.189188 GAAGTAGCGAGCGGCCGA 62.189 66.667 33.48 2.66 45.17 5.54
148 149 4.194720 AAGTAGCGAGCGGCCGAG 62.195 66.667 33.48 20.31 45.17 4.63
203 204 2.603892 GCTGATACATTCCATGCGCTTG 60.604 50.000 15.90 15.90 0.00 4.01
211 212 0.534877 TCCATGCGCTTGTTCACAGT 60.535 50.000 20.40 0.00 0.00 3.55
212 213 0.386352 CCATGCGCTTGTTCACAGTG 60.386 55.000 20.40 0.00 0.00 3.66
213 214 0.308684 CATGCGCTTGTTCACAGTGT 59.691 50.000 14.73 0.00 0.00 3.55
214 215 0.588252 ATGCGCTTGTTCACAGTGTC 59.412 50.000 9.73 0.00 0.00 3.67
215 216 0.742635 TGCGCTTGTTCACAGTGTCA 60.743 50.000 9.73 0.00 0.00 3.58
216 217 0.041839 GCGCTTGTTCACAGTGTCAG 60.042 55.000 0.00 0.00 0.00 3.51
217 218 0.583438 CGCTTGTTCACAGTGTCAGG 59.417 55.000 0.00 3.73 0.00 3.86
218 219 0.308993 GCTTGTTCACAGTGTCAGGC 59.691 55.000 15.17 15.17 0.00 4.85
250 251 3.917760 CTCGCCATCCTCGGGGTC 61.918 72.222 0.00 0.00 39.89 4.46
306 329 3.264897 GTATCCACGCGCTGCCAG 61.265 66.667 5.73 0.00 0.00 4.85
404 427 3.678056 TCACCACTCACTACCATGAAC 57.322 47.619 0.00 0.00 0.00 3.18
405 428 3.239449 TCACCACTCACTACCATGAACT 58.761 45.455 0.00 0.00 0.00 3.01
406 429 3.646162 TCACCACTCACTACCATGAACTT 59.354 43.478 0.00 0.00 0.00 2.66
413 436 1.282157 ACTACCATGAACTTCCTGGCC 59.718 52.381 11.86 0.00 35.85 5.36
420 443 3.634397 TGAACTTCCTGGCCTATGAAG 57.366 47.619 20.75 20.75 40.96 3.02
422 445 4.101114 TGAACTTCCTGGCCTATGAAGTA 58.899 43.478 25.24 14.33 45.85 2.24
423 446 4.081087 TGAACTTCCTGGCCTATGAAGTAC 60.081 45.833 25.24 5.42 45.85 2.73
424 447 3.725634 ACTTCCTGGCCTATGAAGTACT 58.274 45.455 24.35 8.50 45.02 2.73
425 448 4.880164 ACTTCCTGGCCTATGAAGTACTA 58.120 43.478 24.35 0.00 45.02 1.82
426 449 4.896482 ACTTCCTGGCCTATGAAGTACTAG 59.104 45.833 24.35 2.93 45.02 2.57
427 450 4.537945 TCCTGGCCTATGAAGTACTAGT 57.462 45.455 3.32 0.00 0.00 2.57
428 451 5.658198 TCCTGGCCTATGAAGTACTAGTA 57.342 43.478 3.32 0.00 0.00 1.82
429 452 6.215515 TCCTGGCCTATGAAGTACTAGTAT 57.784 41.667 5.75 0.00 0.00 2.12
430 453 7.339177 TCCTGGCCTATGAAGTACTAGTATA 57.661 40.000 5.75 0.00 0.00 1.47
431 454 7.762610 TCCTGGCCTATGAAGTACTAGTATAA 58.237 38.462 5.75 0.00 0.00 0.98
432 455 8.399529 TCCTGGCCTATGAAGTACTAGTATAAT 58.600 37.037 5.75 1.05 0.00 1.28
433 456 9.036980 CCTGGCCTATGAAGTACTAGTATAATT 57.963 37.037 5.75 1.99 0.00 1.40
436 459 9.654663 GGCCTATGAAGTACTAGTATAATTTGG 57.345 37.037 5.75 5.33 0.00 3.28
445 468 9.263446 AGTACTAGTATAATTTGGACTGAACCA 57.737 33.333 5.75 0.00 38.24 3.67
449 472 9.712305 CTAGTATAATTTGGACTGAACCATAGG 57.288 37.037 0.00 0.00 39.82 2.57
450 473 7.518188 AGTATAATTTGGACTGAACCATAGGG 58.482 38.462 0.00 0.00 39.82 3.53
451 474 4.946160 AATTTGGACTGAACCATAGGGA 57.054 40.909 0.00 0.00 39.82 4.20
478 526 1.519408 GTTTTAGCTCAAGGTCGCCA 58.481 50.000 0.00 0.00 0.00 5.69
521 590 2.192624 CGCAAAACTCCACTTGTTTGG 58.807 47.619 0.00 0.00 37.64 3.28
522 591 2.549926 GCAAAACTCCACTTGTTTGGG 58.450 47.619 0.00 0.00 37.64 4.12
523 592 2.167487 GCAAAACTCCACTTGTTTGGGA 59.833 45.455 0.00 0.00 37.64 4.37
532 601 6.887626 TCCACTTGTTTGGGAGTTTATTAC 57.112 37.500 0.00 0.00 37.24 1.89
533 602 5.470777 TCCACTTGTTTGGGAGTTTATTACG 59.529 40.000 0.00 0.00 37.24 3.18
534 603 5.239963 CCACTTGTTTGGGAGTTTATTACGT 59.760 40.000 0.00 0.00 32.35 3.57
535 604 6.427547 CCACTTGTTTGGGAGTTTATTACGTA 59.572 38.462 0.00 0.00 32.35 3.57
536 605 7.360607 CCACTTGTTTGGGAGTTTATTACGTAG 60.361 40.741 0.00 0.00 32.35 3.51
538 607 8.367156 ACTTGTTTGGGAGTTTATTACGTAGTA 58.633 33.333 0.00 0.00 45.11 1.82
539 608 8.532977 TTGTTTGGGAGTTTATTACGTAGTAC 57.467 34.615 0.00 0.00 45.76 2.73
540 609 7.895759 TGTTTGGGAGTTTATTACGTAGTACT 58.104 34.615 0.00 0.00 45.76 2.73
541 610 8.028938 TGTTTGGGAGTTTATTACGTAGTACTC 58.971 37.037 0.00 10.85 45.76 2.59
542 611 6.699575 TGGGAGTTTATTACGTAGTACTCC 57.300 41.667 22.64 22.64 45.76 3.85
543 612 5.296780 TGGGAGTTTATTACGTAGTACTCCG 59.703 44.000 23.28 6.28 46.11 4.63
544 613 5.278022 GGGAGTTTATTACGTAGTACTCCGG 60.278 48.000 23.28 0.00 46.11 5.14
545 614 5.175090 AGTTTATTACGTAGTACTCCGGC 57.825 43.478 12.74 0.00 45.76 6.13
546 615 4.640201 AGTTTATTACGTAGTACTCCGGCA 59.360 41.667 12.74 0.00 45.76 5.69
547 616 4.818534 TTATTACGTAGTACTCCGGCAG 57.181 45.455 12.74 0.00 45.76 4.85
548 617 0.734889 TTACGTAGTACTCCGGCAGC 59.265 55.000 12.74 0.00 45.76 5.25
549 618 0.107508 TACGTAGTACTCCGGCAGCT 60.108 55.000 12.74 0.00 45.11 4.24
550 619 0.107508 ACGTAGTACTCCGGCAGCTA 60.108 55.000 12.74 0.00 41.94 3.32
551 620 0.587285 CGTAGTACTCCGGCAGCTAG 59.413 60.000 0.00 0.00 0.00 3.42
552 621 1.677942 GTAGTACTCCGGCAGCTAGT 58.322 55.000 0.00 0.00 0.00 2.57
553 622 2.022934 GTAGTACTCCGGCAGCTAGTT 58.977 52.381 0.00 0.00 0.00 2.24
554 623 2.431954 AGTACTCCGGCAGCTAGTTA 57.568 50.000 0.00 0.00 0.00 2.24
555 624 2.299521 AGTACTCCGGCAGCTAGTTAG 58.700 52.381 0.00 0.00 0.00 2.34
595 664 3.694734 CATATCCAATTGTTGCACGGAC 58.305 45.455 4.43 0.00 0.00 4.79
614 684 2.886124 GCTACTGCGGCGAAGGAC 60.886 66.667 20.91 3.92 0.00 3.85
671 742 6.593978 CACCTCATTTGCTTATAATAGTCGC 58.406 40.000 0.00 0.00 0.00 5.19
713 784 3.327754 GCGCGCACGGGTGTATAG 61.328 66.667 29.10 0.00 40.57 1.31
714 785 3.327754 CGCGCACGGGTGTATAGC 61.328 66.667 8.75 1.56 34.97 2.97
715 786 2.202824 GCGCACGGGTGTATAGCA 60.203 61.111 0.30 0.00 0.00 3.49
716 787 1.812093 GCGCACGGGTGTATAGCAA 60.812 57.895 0.30 0.00 0.00 3.91
717 788 1.157870 GCGCACGGGTGTATAGCAAT 61.158 55.000 0.30 0.00 0.00 3.56
718 789 1.870580 GCGCACGGGTGTATAGCAATA 60.871 52.381 0.30 0.00 0.00 1.90
719 790 2.475818 CGCACGGGTGTATAGCAATAA 58.524 47.619 0.25 0.00 0.00 1.40
720 791 2.867368 CGCACGGGTGTATAGCAATAAA 59.133 45.455 0.25 0.00 0.00 1.40
721 792 3.310227 CGCACGGGTGTATAGCAATAAAA 59.690 43.478 0.25 0.00 0.00 1.52
722 793 4.201832 CGCACGGGTGTATAGCAATAAAAA 60.202 41.667 0.25 0.00 0.00 1.94
739 810 3.897819 AAAAATAGCGCGCTACAGC 57.102 47.368 40.42 6.98 37.78 4.40
740 811 1.083489 AAAAATAGCGCGCTACAGCA 58.917 45.000 40.42 23.17 42.21 4.41
741 812 1.083489 AAAATAGCGCGCTACAGCAA 58.917 45.000 40.42 22.36 42.21 3.91
742 813 1.083489 AAATAGCGCGCTACAGCAAA 58.917 45.000 40.42 21.55 42.21 3.68
743 814 1.083489 AATAGCGCGCTACAGCAAAA 58.917 45.000 40.42 20.74 42.21 2.44
744 815 1.299541 ATAGCGCGCTACAGCAAAAT 58.700 45.000 40.42 22.12 42.21 1.82
745 816 1.929230 TAGCGCGCTACAGCAAAATA 58.071 45.000 35.48 13.06 42.21 1.40
746 817 0.652592 AGCGCGCTACAGCAAAATAG 59.347 50.000 35.79 0.00 42.21 1.73
747 818 0.925721 GCGCGCTACAGCAAAATAGC 60.926 55.000 26.67 0.00 42.21 2.97
749 820 1.062587 CGCGCTACAGCAAAATAGCTT 59.937 47.619 5.56 0.00 43.70 3.74
750 821 2.709636 GCGCTACAGCAAAATAGCTTC 58.290 47.619 0.00 0.00 43.70 3.86
751 822 2.847254 GCGCTACAGCAAAATAGCTTCG 60.847 50.000 0.00 0.00 43.70 3.79
752 823 2.603110 CGCTACAGCAAAATAGCTTCGA 59.397 45.455 0.00 0.00 43.70 3.71
753 824 3.542291 CGCTACAGCAAAATAGCTTCGAC 60.542 47.826 0.00 0.00 43.70 4.20
754 825 3.242446 GCTACAGCAAAATAGCTTCGACC 60.242 47.826 0.00 0.00 43.70 4.79
755 826 3.059352 ACAGCAAAATAGCTTCGACCT 57.941 42.857 0.00 0.00 43.70 3.85
756 827 3.003480 ACAGCAAAATAGCTTCGACCTC 58.997 45.455 0.00 0.00 43.70 3.85
757 828 3.002791 CAGCAAAATAGCTTCGACCTCA 58.997 45.455 0.00 0.00 43.70 3.86
758 829 3.436704 CAGCAAAATAGCTTCGACCTCAA 59.563 43.478 0.00 0.00 43.70 3.02
759 830 4.072131 AGCAAAATAGCTTCGACCTCAAA 58.928 39.130 0.00 0.00 43.70 2.69
760 831 4.518970 AGCAAAATAGCTTCGACCTCAAAA 59.481 37.500 0.00 0.00 43.70 2.44
761 832 5.183904 AGCAAAATAGCTTCGACCTCAAAAT 59.816 36.000 0.00 0.00 43.70 1.82
762 833 6.374333 AGCAAAATAGCTTCGACCTCAAAATA 59.626 34.615 0.00 0.00 43.70 1.40
763 834 7.067494 AGCAAAATAGCTTCGACCTCAAAATAT 59.933 33.333 0.00 0.00 43.70 1.28
764 835 8.342634 GCAAAATAGCTTCGACCTCAAAATATA 58.657 33.333 0.00 0.00 0.00 0.86
772 843 9.974750 GCTTCGACCTCAAAATATATTATTAGC 57.025 33.333 0.00 0.00 0.00 3.09
774 845 9.701098 TTCGACCTCAAAATATATTATTAGCGT 57.299 29.630 0.00 0.00 0.00 5.07
775 846 9.135843 TCGACCTCAAAATATATTATTAGCGTG 57.864 33.333 0.00 0.00 0.00 5.34
776 847 7.898309 CGACCTCAAAATATATTATTAGCGTGC 59.102 37.037 0.00 0.00 0.00 5.34
777 848 8.848474 ACCTCAAAATATATTATTAGCGTGCT 57.152 30.769 0.00 0.00 0.00 4.40
778 849 9.938280 ACCTCAAAATATATTATTAGCGTGCTA 57.062 29.630 0.00 0.00 0.00 3.49
798 869 6.449448 GCTATTAGCAAGACGTTGTATACC 57.551 41.667 10.83 0.00 41.89 2.73
799 870 5.116680 GCTATTAGCAAGACGTTGTATACCG 59.883 44.000 10.83 0.01 41.89 4.02
800 871 4.700268 TTAGCAAGACGTTGTATACCGA 57.300 40.909 8.29 0.00 35.92 4.69
801 872 3.795623 AGCAAGACGTTGTATACCGAT 57.204 42.857 8.29 0.00 35.92 4.18
802 873 4.906065 AGCAAGACGTTGTATACCGATA 57.094 40.909 8.29 0.00 35.92 2.92
803 874 5.449107 AGCAAGACGTTGTATACCGATAT 57.551 39.130 8.29 0.00 35.92 1.63
804 875 6.564709 AGCAAGACGTTGTATACCGATATA 57.435 37.500 8.29 0.00 35.92 0.86
805 876 7.154435 AGCAAGACGTTGTATACCGATATAT 57.846 36.000 8.29 0.00 35.92 0.86
806 877 7.600065 AGCAAGACGTTGTATACCGATATATT 58.400 34.615 8.29 0.00 35.92 1.28
807 878 8.086522 AGCAAGACGTTGTATACCGATATATTT 58.913 33.333 8.29 0.00 35.92 1.40
808 879 9.345517 GCAAGACGTTGTATACCGATATATTTA 57.654 33.333 8.29 0.00 35.92 1.40
810 881 9.565213 AAGACGTTGTATACCGATATATTTAGC 57.435 33.333 8.29 0.00 0.00 3.09
811 882 7.907045 AGACGTTGTATACCGATATATTTAGCG 59.093 37.037 8.29 0.00 36.99 4.26
812 883 7.751732 ACGTTGTATACCGATATATTTAGCGA 58.248 34.615 8.29 0.00 39.53 4.93
813 884 7.907045 ACGTTGTATACCGATATATTTAGCGAG 59.093 37.037 8.29 0.00 39.53 5.03
814 885 8.118607 CGTTGTATACCGATATATTTAGCGAGA 58.881 37.037 2.29 0.00 39.53 4.04
815 886 9.219497 GTTGTATACCGATATATTTAGCGAGAC 57.781 37.037 2.29 0.00 39.53 3.36
816 887 8.496707 TGTATACCGATATATTTAGCGAGACA 57.503 34.615 2.29 0.00 39.53 3.41
817 888 8.949177 TGTATACCGATATATTTAGCGAGACAA 58.051 33.333 2.29 0.00 39.53 3.18
818 889 9.947669 GTATACCGATATATTTAGCGAGACAAT 57.052 33.333 2.29 0.00 39.53 2.71
820 891 7.813852 ACCGATATATTTAGCGAGACAATTC 57.186 36.000 2.29 0.00 39.53 2.17
821 892 7.603651 ACCGATATATTTAGCGAGACAATTCT 58.396 34.615 2.29 0.00 39.53 2.40
822 893 7.755822 ACCGATATATTTAGCGAGACAATTCTC 59.244 37.037 2.29 0.00 44.50 2.87
836 907 8.221801 GAGACAATTCTCAATACGCTATAGTG 57.778 38.462 11.80 11.80 46.84 2.74
837 908 7.717568 AGACAATTCTCAATACGCTATAGTGT 58.282 34.615 21.86 21.86 42.11 3.55
838 909 7.649705 AGACAATTCTCAATACGCTATAGTGTG 59.350 37.037 25.72 11.73 39.38 3.82
839 910 6.201044 ACAATTCTCAATACGCTATAGTGTGC 59.799 38.462 25.72 0.36 39.38 4.57
840 911 5.515797 TTCTCAATACGCTATAGTGTGCT 57.484 39.130 25.72 12.22 39.38 4.40
841 912 6.628919 TTCTCAATACGCTATAGTGTGCTA 57.371 37.500 25.72 9.26 39.38 3.49
842 913 6.819397 TCTCAATACGCTATAGTGTGCTAT 57.181 37.500 25.72 11.08 39.38 2.97
843 914 7.215719 TCTCAATACGCTATAGTGTGCTATT 57.784 36.000 25.72 15.80 39.38 1.73
844 915 8.331730 TCTCAATACGCTATAGTGTGCTATTA 57.668 34.615 25.72 7.86 39.38 0.98
845 916 8.451748 TCTCAATACGCTATAGTGTGCTATTAG 58.548 37.037 25.72 15.54 39.38 1.73
846 917 7.027760 TCAATACGCTATAGTGTGCTATTAGC 58.972 38.462 25.72 8.80 42.82 3.09
1053 1153 2.736236 CTGTGCGTGCTCGAGCTT 60.736 61.111 35.27 0.00 42.66 3.74
1338 1458 7.178097 TCCTTCTCCCTTCAGTTTTACTAGTAC 59.822 40.741 0.91 0.00 0.00 2.73
1339 1459 7.178805 CCTTCTCCCTTCAGTTTTACTAGTACT 59.821 40.741 0.91 0.00 0.00 2.73
1340 1460 9.240734 CTTCTCCCTTCAGTTTTACTAGTACTA 57.759 37.037 0.91 1.89 0.00 1.82
1382 1702 4.713553 TGTTAGAGGAGTTCAATGCACAA 58.286 39.130 0.00 0.00 0.00 3.33
1388 1708 4.154942 AGGAGTTCAATGCACAAGGAAAT 58.845 39.130 0.00 0.00 0.00 2.17
1394 1714 7.669427 AGTTCAATGCACAAGGAAATTGAATA 58.331 30.769 10.14 0.00 45.60 1.75
1395 1715 8.316214 AGTTCAATGCACAAGGAAATTGAATAT 58.684 29.630 10.14 2.14 45.60 1.28
1397 1717 7.042950 TCAATGCACAAGGAAATTGAATATGG 58.957 34.615 0.00 0.00 41.83 2.74
1398 1718 5.341872 TGCACAAGGAAATTGAATATGGG 57.658 39.130 0.00 0.00 41.83 4.00
1403 1723 6.980397 CACAAGGAAATTGAATATGGGCTTAC 59.020 38.462 0.00 0.00 41.83 2.34
1405 1725 6.966534 AGGAAATTGAATATGGGCTTACTG 57.033 37.500 0.00 0.00 0.00 2.74
1406 1726 6.672593 AGGAAATTGAATATGGGCTTACTGA 58.327 36.000 0.00 0.00 0.00 3.41
1528 1858 3.547601 CGCCAAACACCTTTAGTTAACG 58.452 45.455 0.00 0.00 0.00 3.18
1574 1915 4.261572 GCCTGAAGCAGACTATAGACAGAG 60.262 50.000 6.78 0.00 42.97 3.35
1615 2469 1.459592 GATTTGACGTTGTCGGGAGTG 59.540 52.381 0.00 0.00 41.85 3.51
1638 2928 4.170468 ACAAAGAAACCAGTCCAGACAT 57.830 40.909 0.00 0.00 0.00 3.06
1643 2933 2.867109 AACCAGTCCAGACATCCAAG 57.133 50.000 0.00 0.00 0.00 3.61
1649 2939 1.815003 GTCCAGACATCCAAGGCAAAG 59.185 52.381 0.00 0.00 0.00 2.77
1653 2943 3.018856 CAGACATCCAAGGCAAAGCATA 58.981 45.455 0.00 0.00 0.00 3.14
1654 2944 3.066342 CAGACATCCAAGGCAAAGCATAG 59.934 47.826 0.00 0.00 0.00 2.23
1732 3205 3.706600 AAACGCCAATTAGGGAGTACA 57.293 42.857 0.00 0.00 40.28 2.90
1738 3211 4.449131 GCCAATTAGGGAGTACACCTTAC 58.551 47.826 13.52 0.00 39.54 2.34
1762 3235 8.783660 ACAAAGATTACTAGATGATACCCTCA 57.216 34.615 0.00 0.00 38.53 3.86
1763 3236 8.643324 ACAAAGATTACTAGATGATACCCTCAC 58.357 37.037 0.00 0.00 36.48 3.51
1765 3238 8.783660 AAGATTACTAGATGATACCCTCACAA 57.216 34.615 0.00 0.00 36.48 3.33
1766 3239 8.964533 AGATTACTAGATGATACCCTCACAAT 57.035 34.615 0.00 0.00 36.48 2.71
1767 3240 8.811017 AGATTACTAGATGATACCCTCACAATG 58.189 37.037 0.00 0.00 36.48 2.82
1768 3241 7.914427 TTACTAGATGATACCCTCACAATGT 57.086 36.000 0.00 0.00 36.48 2.71
1769 3242 6.814954 ACTAGATGATACCCTCACAATGTT 57.185 37.500 0.00 0.00 36.48 2.71
1770 3243 6.821388 ACTAGATGATACCCTCACAATGTTC 58.179 40.000 0.00 0.00 36.48 3.18
1771 3244 5.965033 AGATGATACCCTCACAATGTTCT 57.035 39.130 0.00 0.00 36.48 3.01
1772 3245 5.923204 AGATGATACCCTCACAATGTTCTC 58.077 41.667 0.00 0.00 36.48 2.87
1773 3246 5.664908 AGATGATACCCTCACAATGTTCTCT 59.335 40.000 0.00 0.00 36.48 3.10
1774 3247 5.762179 TGATACCCTCACAATGTTCTCTT 57.238 39.130 0.00 0.00 0.00 2.85
1775 3248 5.734720 TGATACCCTCACAATGTTCTCTTC 58.265 41.667 0.00 0.00 0.00 2.87
1776 3249 5.485353 TGATACCCTCACAATGTTCTCTTCT 59.515 40.000 0.00 0.00 0.00 2.85
1777 3250 4.713792 ACCCTCACAATGTTCTCTTCTT 57.286 40.909 0.00 0.00 0.00 2.52
1778 3251 5.053978 ACCCTCACAATGTTCTCTTCTTT 57.946 39.130 0.00 0.00 0.00 2.52
1779 3252 5.449553 ACCCTCACAATGTTCTCTTCTTTT 58.550 37.500 0.00 0.00 0.00 2.27
1780 3253 5.893824 ACCCTCACAATGTTCTCTTCTTTTT 59.106 36.000 0.00 0.00 0.00 1.94
1781 3254 6.039829 ACCCTCACAATGTTCTCTTCTTTTTC 59.960 38.462 0.00 0.00 0.00 2.29
1782 3255 6.138761 CCTCACAATGTTCTCTTCTTTTTCG 58.861 40.000 0.00 0.00 0.00 3.46
1783 3256 6.060028 TCACAATGTTCTCTTCTTTTTCGG 57.940 37.500 0.00 0.00 0.00 4.30
1784 3257 5.008613 TCACAATGTTCTCTTCTTTTTCGGG 59.991 40.000 0.00 0.00 0.00 5.14
1785 3258 4.278419 ACAATGTTCTCTTCTTTTTCGGGG 59.722 41.667 0.00 0.00 0.00 5.73
1786 3259 2.858745 TGTTCTCTTCTTTTTCGGGGG 58.141 47.619 0.00 0.00 0.00 5.40
1787 3260 2.173996 TGTTCTCTTCTTTTTCGGGGGT 59.826 45.455 0.00 0.00 0.00 4.95
1788 3261 3.391955 TGTTCTCTTCTTTTTCGGGGGTA 59.608 43.478 0.00 0.00 0.00 3.69
1789 3262 4.141436 TGTTCTCTTCTTTTTCGGGGGTAA 60.141 41.667 0.00 0.00 0.00 2.85
1790 3263 4.710313 TCTCTTCTTTTTCGGGGGTAAA 57.290 40.909 0.00 0.00 0.00 2.01
1791 3264 4.648651 TCTCTTCTTTTTCGGGGGTAAAG 58.351 43.478 0.00 0.00 0.00 1.85
1792 3265 3.756963 CTCTTCTTTTTCGGGGGTAAAGG 59.243 47.826 0.00 0.00 31.45 3.11
1793 3266 3.395273 TCTTCTTTTTCGGGGGTAAAGGA 59.605 43.478 0.00 0.00 31.45 3.36
1794 3267 3.428413 TCTTTTTCGGGGGTAAAGGAG 57.572 47.619 0.00 0.00 31.45 3.69
1795 3268 2.981081 TCTTTTTCGGGGGTAAAGGAGA 59.019 45.455 0.00 0.00 31.45 3.71
1796 3269 3.395273 TCTTTTTCGGGGGTAAAGGAGAA 59.605 43.478 0.00 0.00 31.45 2.87
1797 3270 4.043686 TCTTTTTCGGGGGTAAAGGAGAAT 59.956 41.667 0.00 0.00 31.45 2.40
1798 3271 4.391683 TTTTCGGGGGTAAAGGAGAATT 57.608 40.909 0.00 0.00 0.00 2.17
1799 3272 4.391683 TTTCGGGGGTAAAGGAGAATTT 57.608 40.909 0.00 0.00 0.00 1.82
1800 3273 4.391683 TTCGGGGGTAAAGGAGAATTTT 57.608 40.909 0.00 0.00 0.00 1.82
1801 3274 4.391683 TCGGGGGTAAAGGAGAATTTTT 57.608 40.909 0.00 0.00 0.00 1.94
1829 3302 8.511321 TGCCGGATTGTTTAGCAATATATTAAG 58.489 33.333 5.05 0.00 46.90 1.85
1911 3387 8.491331 AATAAATATGATTTGTGGTGTTTGGC 57.509 30.769 0.00 0.00 0.00 4.52
1912 3388 5.480642 AATATGATTTGTGGTGTTTGGCA 57.519 34.783 0.00 0.00 0.00 4.92
1937 3413 5.718801 TGTATAACTAGGCAATTTCCCCA 57.281 39.130 0.00 0.00 0.00 4.96
1939 3415 1.834188 AACTAGGCAATTTCCCCACG 58.166 50.000 0.00 0.00 0.00 4.94
1946 3422 2.926420 AATTTCCCCACGCGTTGCC 61.926 57.895 10.22 0.00 0.00 4.52
1958 3434 2.607457 CGTTGCCGCGGGAATATAA 58.393 52.632 34.86 10.07 0.00 0.98
1964 3440 4.274602 TGCCGCGGGAATATAAAGATTA 57.725 40.909 29.38 0.00 0.00 1.75
1971 3447 8.388103 CCGCGGGAATATAAAGATTAATTACAG 58.612 37.037 20.10 0.00 0.00 2.74
2045 3521 7.801716 ACATGTAAATATTCCGTACTTGCAT 57.198 32.000 0.00 0.00 0.00 3.96
2056 3532 5.242434 TCCGTACTTGCATTCTGTGTAAAT 58.758 37.500 0.00 0.00 31.83 1.40
2086 3562 7.430441 GCATTTCACAACCTTTAGGAAGTAAA 58.570 34.615 2.06 3.74 38.94 2.01
2091 3567 9.856162 TTCACAACCTTTAGGAAGTAAATAAGT 57.144 29.630 2.06 0.00 38.94 2.24
2196 3673 3.181329 AGTGTATGGTGAAGTGGGATGA 58.819 45.455 0.00 0.00 0.00 2.92
2207 3684 3.090210 AGTGGGATGATTGCATGTTGA 57.910 42.857 0.00 0.00 34.11 3.18
2261 3740 6.256321 GCATGGGCTGAAAAATATTGTTAGTG 59.744 38.462 0.00 0.00 36.96 2.74
2266 3745 6.476706 GGCTGAAAAATATTGTTAGTGGATGC 59.523 38.462 0.00 0.00 0.00 3.91
2270 3749 8.970020 TGAAAAATATTGTTAGTGGATGCTGAT 58.030 29.630 0.00 0.00 0.00 2.90
2272 3751 7.886629 AAATATTGTTAGTGGATGCTGATGT 57.113 32.000 0.00 0.00 0.00 3.06
2273 3752 6.872628 ATATTGTTAGTGGATGCTGATGTG 57.127 37.500 0.00 0.00 0.00 3.21
2325 3804 7.010923 GCATGTTGAGAGAATTAGAAGTAGTGG 59.989 40.741 0.00 0.00 0.00 4.00
2326 3805 7.776618 TGTTGAGAGAATTAGAAGTAGTGGA 57.223 36.000 0.00 0.00 0.00 4.02
2344 3823 9.884814 AGTAGTGGAGATCAACTATTTAGGTAT 57.115 33.333 0.50 0.00 0.00 2.73
2390 3870 8.804743 CAGAATGTAAATTCTCATGCATGTTTC 58.195 33.333 25.43 10.86 38.73 2.78
2403 3883 1.820519 CATGTTTCCATGTGGAGGTGG 59.179 52.381 1.49 0.00 46.36 4.61
2404 3884 0.850100 TGTTTCCATGTGGAGGTGGT 59.150 50.000 1.49 0.00 46.36 4.16
2433 3913 2.228115 GCATGGTTGCTTGTTGTGC 58.772 52.632 0.00 0.00 45.77 4.57
2436 3916 1.067364 CATGGTTGCTTGTTGTGCTGA 59.933 47.619 0.00 0.00 0.00 4.26
2437 3917 1.180907 TGGTTGCTTGTTGTGCTGAA 58.819 45.000 0.00 0.00 0.00 3.02
2438 3918 1.134753 TGGTTGCTTGTTGTGCTGAAG 59.865 47.619 0.00 0.00 0.00 3.02
2443 3923 2.122564 GCTTGTTGTGCTGAAGCTTTC 58.877 47.619 0.00 0.00 42.66 2.62
2445 3925 3.625938 CTTGTTGTGCTGAAGCTTTCTC 58.374 45.455 0.00 0.00 42.66 2.87
2460 3940 4.110482 GCTTTCTCCATGCATGTTGAATC 58.890 43.478 24.58 16.47 0.00 2.52
2503 3983 7.917505 GCATGTTGAGAGAAATAAATTAGTGGG 59.082 37.037 0.00 0.00 0.00 4.61
2504 3984 7.938140 TGTTGAGAGAAATAAATTAGTGGGG 57.062 36.000 0.00 0.00 0.00 4.96
2505 3985 7.466804 TGTTGAGAGAAATAAATTAGTGGGGT 58.533 34.615 0.00 0.00 0.00 4.95
2506 3986 7.610305 TGTTGAGAGAAATAAATTAGTGGGGTC 59.390 37.037 0.00 0.00 0.00 4.46
2508 3988 8.618240 TGAGAGAAATAAATTAGTGGGGTCTA 57.382 34.615 0.00 0.00 0.00 2.59
2513 3993 9.172060 AGAAATAAATTAGTGGGGTCTAGCTAT 57.828 33.333 0.00 0.00 0.00 2.97
2521 4001 8.647256 TTAGTGGGGTCTAGCTATTTAGATAC 57.353 38.462 0.00 0.00 32.63 2.24
2522 4002 6.865520 AGTGGGGTCTAGCTATTTAGATACT 58.134 40.000 0.00 0.00 32.63 2.12
2600 4095 1.646912 TGGTCCCACCAGTAAATCGA 58.353 50.000 0.00 0.00 44.79 3.59
2711 4315 3.569701 CCAACAACACTAGGTCTTGCATT 59.430 43.478 0.00 0.00 0.00 3.56
2746 4350 3.307059 GCTCACACACTTTCCACTATCCT 60.307 47.826 0.00 0.00 0.00 3.24
2755 4359 4.019231 ACTTTCCACTATCCTTGAACCCTC 60.019 45.833 0.00 0.00 0.00 4.30
2863 4471 1.608283 CCCTAGTTATAGGCCTTGCGC 60.608 57.143 12.58 0.00 46.50 6.09
2869 4477 2.304901 TATAGGCCTTGCGCTTGCGA 62.305 55.000 12.58 1.23 43.34 5.10
2913 4521 0.461961 GAGCATCTACAGCCGGACTT 59.538 55.000 5.05 0.00 0.00 3.01
2915 4523 0.811616 GCATCTACAGCCGGACTTGG 60.812 60.000 5.05 0.00 0.00 3.61
2925 4533 1.089920 CCGGACTTGGCAAATCTGAG 58.910 55.000 18.43 5.48 0.00 3.35
2926 4534 1.611673 CCGGACTTGGCAAATCTGAGT 60.612 52.381 18.43 2.81 0.00 3.41
2930 4538 3.416156 GACTTGGCAAATCTGAGTCCTT 58.584 45.455 0.66 0.00 32.58 3.36
3005 4716 7.757941 TGTCAAATAACTGATTCCACAATCA 57.242 32.000 0.00 0.00 45.20 2.57
3071 4783 5.723295 ACGTAAACCTAATCTTAAGCGGAA 58.277 37.500 0.00 0.00 0.00 4.30
3073 4785 5.006068 CGTAAACCTAATCTTAAGCGGAACC 59.994 44.000 0.00 0.00 0.00 3.62
3129 5496 2.919494 GCGCCCCTCAAAGTGTTGG 61.919 63.158 0.00 0.00 35.29 3.77
3131 5498 0.250553 CGCCCCTCAAAGTGTTGGTA 60.251 55.000 0.00 0.00 35.29 3.25
3132 5499 1.613255 CGCCCCTCAAAGTGTTGGTAT 60.613 52.381 0.00 0.00 35.29 2.73
3135 5502 2.041081 CCCCTCAAAGTGTTGGTATGGA 59.959 50.000 0.00 0.00 35.29 3.41
3137 5504 3.497763 CCCTCAAAGTGTTGGTATGGACA 60.498 47.826 0.00 0.00 35.29 4.02
3145 5512 1.828461 TTGGTATGGACACCGGCGAA 61.828 55.000 9.30 0.00 41.88 4.70
3201 5652 4.680237 TCAAGGTGCCGCCGTCTG 62.680 66.667 0.00 0.00 43.70 3.51
3217 6111 1.699634 GTCTGCCATGCCCTATTCCTA 59.300 52.381 0.00 0.00 0.00 2.94
3225 6119 1.578703 TGCCCTATTCCTACCAGGAGA 59.421 52.381 0.00 0.00 46.73 3.71
3259 6153 1.456705 AGCCGGTCATCTCCTCCTC 60.457 63.158 1.90 0.00 0.00 3.71
3320 6214 1.884579 GTGTAGGAATCGGATCCGCTA 59.115 52.381 29.62 20.41 44.60 4.26
3382 6286 2.352805 GGTGGCAGAGGGAAGTGG 59.647 66.667 0.00 0.00 0.00 4.00
3383 6287 2.224159 GGTGGCAGAGGGAAGTGGA 61.224 63.158 0.00 0.00 0.00 4.02
3384 6288 1.298014 GTGGCAGAGGGAAGTGGAG 59.702 63.158 0.00 0.00 0.00 3.86
3385 6289 1.152030 TGGCAGAGGGAAGTGGAGT 60.152 57.895 0.00 0.00 0.00 3.85
3386 6290 1.298014 GGCAGAGGGAAGTGGAGTG 59.702 63.158 0.00 0.00 0.00 3.51
3387 6291 1.194781 GGCAGAGGGAAGTGGAGTGA 61.195 60.000 0.00 0.00 0.00 3.41
3388 6292 0.687354 GCAGAGGGAAGTGGAGTGAA 59.313 55.000 0.00 0.00 0.00 3.18
3389 6293 1.338579 GCAGAGGGAAGTGGAGTGAAG 60.339 57.143 0.00 0.00 0.00 3.02
3390 6294 1.974236 CAGAGGGAAGTGGAGTGAAGT 59.026 52.381 0.00 0.00 0.00 3.01
3391 6295 1.974236 AGAGGGAAGTGGAGTGAAGTG 59.026 52.381 0.00 0.00 0.00 3.16
3432 6339 1.073923 GCGGATGGGGAGGAATATGTT 59.926 52.381 0.00 0.00 0.00 2.71
3511 6428 4.264083 CCCATATCTGCCTCATATTTGGGT 60.264 45.833 10.44 0.00 35.82 4.51
3560 6477 2.033194 GTTCGAGGCGGGTTTGAGG 61.033 63.158 0.00 0.00 0.00 3.86
3561 6478 3.894547 TTCGAGGCGGGTTTGAGGC 62.895 63.158 0.00 0.00 0.00 4.70
3563 6480 4.699522 GAGGCGGGTTTGAGGCGT 62.700 66.667 0.00 0.00 38.03 5.68
3565 6482 4.699522 GGCGGGTTTGAGGCGTCT 62.700 66.667 8.06 0.00 0.00 4.18
3568 6485 1.597027 CGGGTTTGAGGCGTCTGTT 60.597 57.895 8.06 0.00 0.00 3.16
3571 6488 1.021968 GGTTTGAGGCGTCTGTTTGT 58.978 50.000 8.06 0.00 0.00 2.83
3576 6493 2.159272 GAGGCGTCTGTTTGTGTCGC 62.159 60.000 0.00 0.00 44.95 5.19
3697 6615 7.885297 TGTTGAACTTTATTCATTCTCCAAGG 58.115 34.615 0.00 0.00 0.00 3.61
3775 6702 8.997621 ACATAACAAGATTATTACGACACAGT 57.002 30.769 0.00 0.00 0.00 3.55
3859 6786 6.770542 AGACCTCCAAGTAAACTCCTAAAAG 58.229 40.000 0.00 0.00 0.00 2.27
3909 6836 8.268878 AGCAATCTCCTTCTATTTACTATGGT 57.731 34.615 0.00 0.00 0.00 3.55
3910 6837 8.153550 AGCAATCTCCTTCTATTTACTATGGTG 58.846 37.037 0.00 0.00 0.00 4.17
4045 6972 5.552870 AATTCACATATTCCTAGCTCGGT 57.447 39.130 3.89 0.00 0.00 4.69
4049 6976 4.038042 TCACATATTCCTAGCTCGGTTCAG 59.962 45.833 3.89 0.00 0.00 3.02
4109 7036 4.766404 AGAATCGGTTGTGAAAATGACC 57.234 40.909 0.00 0.00 0.00 4.02
4119 7046 7.305474 GGTTGTGAAAATGACCATACAAGTAG 58.695 38.462 0.00 0.00 32.41 2.57
4305 8912 6.736110 AGTAGGGATGCCTAATTAAACGTA 57.264 37.500 15.46 0.00 0.00 3.57
4405 9582 2.300437 GCACTCTACAAGGCCTATAGGG 59.700 54.545 20.58 18.42 35.18 3.53
4407 9584 2.158143 ACTCTACAAGGCCTATAGGGGG 60.158 54.545 22.20 14.96 35.18 5.40
4571 10153 6.304882 GTTCTTTCACTATTCGCAAAGTACC 58.695 40.000 0.00 0.00 0.00 3.34
4621 11455 9.328721 CAACTTGTTGTATTGTGTATACATGTG 57.671 33.333 9.11 0.00 46.36 3.21
4773 11631 3.446310 AAACCGGCCAAAAACTTGTAG 57.554 42.857 0.00 0.00 0.00 2.74
4874 11764 2.632544 GCAACTGCTCTGCATGGCA 61.633 57.895 12.13 12.13 38.13 4.92
4901 11791 2.029964 GGGAAGTTCACGTCGGCA 59.970 61.111 5.01 0.00 0.00 5.69
5051 11941 2.668212 TTGGAAAGCCTGGTCGCG 60.668 61.111 0.00 0.00 34.31 5.87
5246 12447 0.250209 CCATGCTAGCCTCGATGCTT 60.250 55.000 20.46 5.33 42.75 3.91
5247 12448 1.001293 CCATGCTAGCCTCGATGCTTA 59.999 52.381 20.46 8.25 42.75 3.09
5370 12573 0.889186 GTCGGCAACACCCTCACATT 60.889 55.000 0.00 0.00 33.26 2.71
5379 12584 5.762045 CAACACCCTCACATTTTACTTGAG 58.238 41.667 0.00 0.00 37.17 3.02
5406 12615 0.301687 CGTGTCGGCATGATGCTAAC 59.698 55.000 17.84 15.16 44.28 2.34
5411 12620 1.089481 CGGCATGATGCTAACACCGT 61.089 55.000 17.84 0.00 44.28 4.83
5543 12774 4.908333 TGGGACAGCTACCATCCA 57.092 55.556 10.60 1.29 33.87 3.41
5684 12916 1.792949 CCGTGTGTGCTTAGACAGTTC 59.207 52.381 0.00 0.00 0.00 3.01
5731 12963 2.175878 ATAGCCGCCTCAAAGCATAG 57.824 50.000 0.00 0.00 0.00 2.23
5786 13019 6.138263 TGCATTTCTAAATGATCCCCAGAAT 58.862 36.000 17.46 0.00 46.72 2.40
5800 13033 9.200817 TGATCCCCAGAATTTAATTTCCTAAAG 57.799 33.333 6.50 0.00 0.00 1.85
5828 13061 7.235935 TCCTTTTGTTATTTCTCTCGTCCTA 57.764 36.000 0.00 0.00 0.00 2.94
5856 13272 4.536364 ATGTAAATCTCATTTCGGCGTG 57.464 40.909 6.85 0.00 33.82 5.34
5907 13323 5.116831 TGCACGAAATCAATTTCAAATCACG 59.883 36.000 14.11 3.49 44.83 4.35
5916 13332 5.401972 TCAATTTCAAATCACGCATGTTCAC 59.598 36.000 0.00 0.00 0.00 3.18
5969 13385 2.664402 AAGAAGTGCTTGGGTCACAT 57.336 45.000 0.00 0.00 36.93 3.21
6115 13538 3.011821 TGCGGGATAGGGAGAAGAGATAT 59.988 47.826 0.00 0.00 0.00 1.63
6312 13748 0.396435 ACCCGTCTGCAAGTTGATCA 59.604 50.000 7.16 0.00 33.76 2.92
6404 13840 5.079689 TCGATGTGTTTAGTTCTGGCATA 57.920 39.130 0.00 0.00 0.00 3.14
6468 13904 5.047847 TCACACCAAAGAAGTAGAGTTTCG 58.952 41.667 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.474077 CTTGCCCATAACAACAGGCTC 59.526 52.381 1.12 0.00 45.94 4.70
3 4 4.497300 CATTTCTTGCCCATAACAACAGG 58.503 43.478 0.00 0.00 0.00 4.00
4 5 3.928375 GCATTTCTTGCCCATAACAACAG 59.072 43.478 0.00 0.00 46.15 3.16
17 18 2.167075 GAGGTCCAATGGGCATTTCTTG 59.833 50.000 6.11 0.00 0.00 3.02
18 19 2.460669 GAGGTCCAATGGGCATTTCTT 58.539 47.619 6.11 0.00 0.00 2.52
19 20 1.342374 GGAGGTCCAATGGGCATTTCT 60.342 52.381 6.11 0.00 35.64 2.52
20 21 1.114627 GGAGGTCCAATGGGCATTTC 58.885 55.000 6.11 0.00 35.64 2.17
21 22 0.325577 GGGAGGTCCAATGGGCATTT 60.326 55.000 6.11 0.00 37.91 2.32
22 23 1.224003 AGGGAGGTCCAATGGGCATT 61.224 55.000 6.11 0.00 38.24 3.56
23 24 1.623686 AGGGAGGTCCAATGGGCAT 60.624 57.895 6.11 0.00 38.24 4.40
24 25 2.204291 AGGGAGGTCCAATGGGCA 60.204 61.111 6.11 0.00 38.24 5.36
25 26 2.276740 CAGGGAGGTCCAATGGGC 59.723 66.667 0.00 0.00 38.24 5.36
26 27 1.609783 GTCAGGGAGGTCCAATGGG 59.390 63.158 0.00 0.00 38.24 4.00
27 28 1.221840 CGTCAGGGAGGTCCAATGG 59.778 63.158 0.00 0.00 38.24 3.16
28 29 0.613260 TTCGTCAGGGAGGTCCAATG 59.387 55.000 0.00 0.00 38.24 2.82
29 30 1.210478 CATTCGTCAGGGAGGTCCAAT 59.790 52.381 0.00 0.00 38.24 3.16
30 31 0.613260 CATTCGTCAGGGAGGTCCAA 59.387 55.000 0.00 0.00 38.24 3.53
31 32 1.899437 GCATTCGTCAGGGAGGTCCA 61.899 60.000 0.00 0.00 38.24 4.02
32 33 1.153349 GCATTCGTCAGGGAGGTCC 60.153 63.158 0.00 0.00 0.00 4.46
33 34 0.460987 CTGCATTCGTCAGGGAGGTC 60.461 60.000 0.00 0.00 0.00 3.85
34 35 1.194781 ACTGCATTCGTCAGGGAGGT 61.195 55.000 0.00 0.00 35.94 3.85
35 36 0.460987 GACTGCATTCGTCAGGGAGG 60.461 60.000 0.00 0.00 35.94 4.30
36 37 0.247460 TGACTGCATTCGTCAGGGAG 59.753 55.000 3.31 0.00 36.54 4.30
37 38 0.037326 GTGACTGCATTCGTCAGGGA 60.037 55.000 7.47 0.00 41.62 4.20
38 39 1.354337 CGTGACTGCATTCGTCAGGG 61.354 60.000 15.66 5.62 41.62 4.45
39 40 0.667487 ACGTGACTGCATTCGTCAGG 60.667 55.000 19.69 19.69 46.79 3.86
40 41 1.649171 GTACGTGACTGCATTCGTCAG 59.351 52.381 7.47 5.37 41.62 3.51
65 66 9.322776 CGTGTAGAATATTGAGGTAATACGTAC 57.677 37.037 0.00 0.00 34.22 3.67
66 67 8.017373 GCGTGTAGAATATTGAGGTAATACGTA 58.983 37.037 0.00 0.00 34.22 3.57
67 68 6.860023 GCGTGTAGAATATTGAGGTAATACGT 59.140 38.462 0.00 0.00 34.22 3.57
68 69 6.032146 CGCGTGTAGAATATTGAGGTAATACG 59.968 42.308 0.00 0.00 34.22 3.06
73 74 3.884693 TCCGCGTGTAGAATATTGAGGTA 59.115 43.478 4.92 0.00 0.00 3.08
203 204 3.386543 ACAGCCTGACACTGTGAAC 57.613 52.632 15.86 8.61 46.38 3.18
211 212 2.653115 CGAGCTGACAGCCTGACA 59.347 61.111 23.74 0.00 43.77 3.58
212 213 2.813042 GCGAGCTGACAGCCTGAC 60.813 66.667 23.74 11.76 43.77 3.51
213 214 2.993840 AGCGAGCTGACAGCCTGA 60.994 61.111 23.74 0.00 43.77 3.86
214 215 2.508887 GAGCGAGCTGACAGCCTG 60.509 66.667 23.74 16.90 43.77 4.85
215 216 4.127040 CGAGCGAGCTGACAGCCT 62.127 66.667 23.74 13.79 43.77 4.58
405 428 4.880164 ACTAGTACTTCATAGGCCAGGAA 58.120 43.478 5.01 4.41 0.00 3.36
406 429 4.537945 ACTAGTACTTCATAGGCCAGGA 57.462 45.455 5.01 0.00 0.00 3.86
423 446 9.712305 CCTATGGTTCAGTCCAAATTATACTAG 57.288 37.037 0.00 0.00 41.09 2.57
424 447 8.656806 CCCTATGGTTCAGTCCAAATTATACTA 58.343 37.037 0.00 0.00 41.09 1.82
425 448 7.349859 TCCCTATGGTTCAGTCCAAATTATACT 59.650 37.037 0.00 0.00 41.09 2.12
426 449 7.514721 TCCCTATGGTTCAGTCCAAATTATAC 58.485 38.462 0.00 0.00 41.09 1.47
427 450 7.349859 ACTCCCTATGGTTCAGTCCAAATTATA 59.650 37.037 0.00 0.00 41.09 0.98
428 451 6.160459 ACTCCCTATGGTTCAGTCCAAATTAT 59.840 38.462 0.00 0.00 41.09 1.28
429 452 5.491078 ACTCCCTATGGTTCAGTCCAAATTA 59.509 40.000 0.00 0.00 41.09 1.40
430 453 4.292306 ACTCCCTATGGTTCAGTCCAAATT 59.708 41.667 0.00 0.00 41.09 1.82
431 454 3.852578 ACTCCCTATGGTTCAGTCCAAAT 59.147 43.478 0.00 0.00 41.09 2.32
432 455 3.256704 ACTCCCTATGGTTCAGTCCAAA 58.743 45.455 0.00 0.00 41.09 3.28
433 456 2.915869 ACTCCCTATGGTTCAGTCCAA 58.084 47.619 0.00 0.00 41.09 3.53
434 457 2.642171 ACTCCCTATGGTTCAGTCCA 57.358 50.000 0.00 0.00 42.01 4.02
435 458 3.644335 ACTACTCCCTATGGTTCAGTCC 58.356 50.000 0.00 0.00 0.00 3.85
436 459 4.275443 CGTACTACTCCCTATGGTTCAGTC 59.725 50.000 0.00 0.00 0.00 3.51
437 460 4.205587 CGTACTACTCCCTATGGTTCAGT 58.794 47.826 0.00 0.00 0.00 3.41
438 461 4.205587 ACGTACTACTCCCTATGGTTCAG 58.794 47.826 0.00 0.00 0.00 3.02
439 462 4.240881 ACGTACTACTCCCTATGGTTCA 57.759 45.455 0.00 0.00 0.00 3.18
440 463 5.588958 AAACGTACTACTCCCTATGGTTC 57.411 43.478 0.00 0.00 0.00 3.62
441 464 6.406288 GCTAAAACGTACTACTCCCTATGGTT 60.406 42.308 0.00 0.00 0.00 3.67
442 465 5.068329 GCTAAAACGTACTACTCCCTATGGT 59.932 44.000 0.00 0.00 0.00 3.55
443 466 5.301298 AGCTAAAACGTACTACTCCCTATGG 59.699 44.000 0.00 0.00 0.00 2.74
444 467 6.039047 TGAGCTAAAACGTACTACTCCCTATG 59.961 42.308 0.00 0.00 0.00 2.23
445 468 6.125029 TGAGCTAAAACGTACTACTCCCTAT 58.875 40.000 0.00 0.00 0.00 2.57
446 469 5.500234 TGAGCTAAAACGTACTACTCCCTA 58.500 41.667 0.00 0.00 0.00 3.53
447 470 4.338879 TGAGCTAAAACGTACTACTCCCT 58.661 43.478 0.00 0.00 0.00 4.20
448 471 4.708726 TGAGCTAAAACGTACTACTCCC 57.291 45.455 0.00 0.00 0.00 4.30
449 472 5.100943 CCTTGAGCTAAAACGTACTACTCC 58.899 45.833 0.00 0.00 0.00 3.85
450 473 5.707931 ACCTTGAGCTAAAACGTACTACTC 58.292 41.667 0.00 0.00 0.00 2.59
451 474 5.618640 CGACCTTGAGCTAAAACGTACTACT 60.619 44.000 0.00 0.00 0.00 2.57
521 590 5.752712 CCGGAGTACTACGTAATAAACTCC 58.247 45.833 25.33 22.93 46.18 3.85
522 591 5.208503 GCCGGAGTACTACGTAATAAACTC 58.791 45.833 25.33 13.69 34.48 3.01
523 592 4.640201 TGCCGGAGTACTACGTAATAAACT 59.360 41.667 25.33 0.00 34.48 2.66
524 593 4.920376 TGCCGGAGTACTACGTAATAAAC 58.080 43.478 25.33 6.89 34.48 2.01
525 594 4.498009 GCTGCCGGAGTACTACGTAATAAA 60.498 45.833 25.33 4.13 34.48 1.40
526 595 3.003689 GCTGCCGGAGTACTACGTAATAA 59.996 47.826 25.33 5.81 34.48 1.40
527 596 2.549754 GCTGCCGGAGTACTACGTAATA 59.450 50.000 25.33 8.18 34.48 0.98
528 597 1.336125 GCTGCCGGAGTACTACGTAAT 59.664 52.381 25.33 0.00 34.48 1.89
529 598 0.734889 GCTGCCGGAGTACTACGTAA 59.265 55.000 25.33 12.38 34.48 3.18
530 599 0.107508 AGCTGCCGGAGTACTACGTA 60.108 55.000 25.33 13.32 34.48 3.57
531 600 0.107508 TAGCTGCCGGAGTACTACGT 60.108 55.000 25.33 9.65 34.48 3.57
532 601 0.587285 CTAGCTGCCGGAGTACTACG 59.413 60.000 21.03 21.03 36.49 3.51
533 602 1.677942 ACTAGCTGCCGGAGTACTAC 58.322 55.000 5.05 0.00 0.00 2.73
534 603 2.431954 AACTAGCTGCCGGAGTACTA 57.568 50.000 5.05 0.00 0.00 1.82
535 604 2.299521 CTAACTAGCTGCCGGAGTACT 58.700 52.381 5.05 0.00 0.00 2.73
536 605 1.269154 GCTAACTAGCTGCCGGAGTAC 60.269 57.143 5.05 0.00 45.62 2.73
537 606 1.030457 GCTAACTAGCTGCCGGAGTA 58.970 55.000 5.05 0.00 45.62 2.59
538 607 1.817209 GCTAACTAGCTGCCGGAGT 59.183 57.895 5.05 0.00 45.62 3.85
539 608 4.740235 GCTAACTAGCTGCCGGAG 57.260 61.111 5.05 0.10 45.62 4.63
549 618 4.524316 TTTGTTCCGTGCTAGCTAACTA 57.476 40.909 17.23 9.08 0.00 2.24
550 619 3.396260 TTTGTTCCGTGCTAGCTAACT 57.604 42.857 17.23 0.00 0.00 2.24
551 620 4.464112 CTTTTTGTTCCGTGCTAGCTAAC 58.536 43.478 17.23 14.44 0.00 2.34
552 621 3.058501 GCTTTTTGTTCCGTGCTAGCTAA 60.059 43.478 17.23 2.38 0.00 3.09
553 622 2.482721 GCTTTTTGTTCCGTGCTAGCTA 59.517 45.455 17.23 0.00 0.00 3.32
554 623 1.266989 GCTTTTTGTTCCGTGCTAGCT 59.733 47.619 17.23 0.00 0.00 3.32
555 624 1.001815 TGCTTTTTGTTCCGTGCTAGC 60.002 47.619 8.10 8.10 0.00 3.42
556 625 3.559238 ATGCTTTTTGTTCCGTGCTAG 57.441 42.857 0.00 0.00 0.00 3.42
557 626 4.095782 GGATATGCTTTTTGTTCCGTGCTA 59.904 41.667 0.00 0.00 0.00 3.49
558 627 3.119495 GGATATGCTTTTTGTTCCGTGCT 60.119 43.478 0.00 0.00 0.00 4.40
559 628 3.179048 GGATATGCTTTTTGTTCCGTGC 58.821 45.455 0.00 0.00 0.00 5.34
560 629 4.433186 TGGATATGCTTTTTGTTCCGTG 57.567 40.909 0.00 0.00 0.00 4.94
561 630 5.659440 ATTGGATATGCTTTTTGTTCCGT 57.341 34.783 0.00 0.00 0.00 4.69
562 631 5.868801 ACAATTGGATATGCTTTTTGTTCCG 59.131 36.000 10.83 0.00 0.00 4.30
614 684 0.596083 CCTGCGGCAGTATCTTCGAG 60.596 60.000 26.79 6.01 0.00 4.04
671 742 3.126722 GACGGCGCGAAGAATGACG 62.127 63.158 12.10 2.74 0.00 4.35
721 792 1.083489 TGCTGTAGCGCGCTATTTTT 58.917 45.000 39.99 18.75 45.83 1.94
722 793 1.083489 TTGCTGTAGCGCGCTATTTT 58.917 45.000 39.99 19.54 45.83 1.82
723 794 1.083489 TTTGCTGTAGCGCGCTATTT 58.917 45.000 39.99 19.95 45.83 1.40
724 795 1.083489 TTTTGCTGTAGCGCGCTATT 58.917 45.000 39.99 20.35 45.83 1.73
725 796 1.299541 ATTTTGCTGTAGCGCGCTAT 58.700 45.000 39.99 22.30 45.83 2.97
726 797 1.858458 CTATTTTGCTGTAGCGCGCTA 59.142 47.619 35.48 35.48 45.83 4.26
727 798 0.652592 CTATTTTGCTGTAGCGCGCT 59.347 50.000 38.01 38.01 45.83 5.92
728 799 0.925721 GCTATTTTGCTGTAGCGCGC 60.926 55.000 26.66 26.66 45.83 6.86
729 800 0.652592 AGCTATTTTGCTGTAGCGCG 59.347 50.000 0.00 0.00 46.05 6.86
730 801 2.709636 GAAGCTATTTTGCTGTAGCGC 58.290 47.619 0.00 0.00 46.05 5.92
731 802 2.603110 TCGAAGCTATTTTGCTGTAGCG 59.397 45.455 0.00 0.00 46.05 4.26
732 803 3.242446 GGTCGAAGCTATTTTGCTGTAGC 60.242 47.826 0.00 0.00 43.24 3.58
733 804 4.184629 AGGTCGAAGCTATTTTGCTGTAG 58.815 43.478 0.00 0.00 43.24 2.74
734 805 4.181578 GAGGTCGAAGCTATTTTGCTGTA 58.818 43.478 0.00 0.00 43.24 2.74
735 806 3.003480 GAGGTCGAAGCTATTTTGCTGT 58.997 45.455 0.00 0.00 43.24 4.40
736 807 3.002791 TGAGGTCGAAGCTATTTTGCTG 58.997 45.455 0.00 0.00 43.24 4.41
737 808 3.334583 TGAGGTCGAAGCTATTTTGCT 57.665 42.857 0.00 0.00 46.40 3.91
738 809 4.419522 TTTGAGGTCGAAGCTATTTTGC 57.580 40.909 0.00 0.00 0.00 3.68
746 817 9.974750 GCTAATAATATATTTTGAGGTCGAAGC 57.025 33.333 2.68 0.00 0.00 3.86
748 819 9.701098 ACGCTAATAATATATTTTGAGGTCGAA 57.299 29.630 2.68 0.00 0.00 3.71
749 820 9.135843 CACGCTAATAATATATTTTGAGGTCGA 57.864 33.333 2.68 0.00 0.00 4.20
750 821 7.898309 GCACGCTAATAATATATTTTGAGGTCG 59.102 37.037 2.68 1.89 0.00 4.79
751 822 8.936864 AGCACGCTAATAATATATTTTGAGGTC 58.063 33.333 2.68 0.00 0.00 3.85
752 823 8.848474 AGCACGCTAATAATATATTTTGAGGT 57.152 30.769 2.68 0.00 0.00 3.85
775 846 5.116680 CGGTATACAACGTCTTGCTAATAGC 59.883 44.000 5.12 5.12 42.82 2.97
776 847 6.432936 TCGGTATACAACGTCTTGCTAATAG 58.567 40.000 5.01 0.00 0.00 1.73
777 848 6.375945 TCGGTATACAACGTCTTGCTAATA 57.624 37.500 5.01 0.00 0.00 0.98
778 849 5.252969 TCGGTATACAACGTCTTGCTAAT 57.747 39.130 5.01 0.00 0.00 1.73
779 850 4.700268 TCGGTATACAACGTCTTGCTAA 57.300 40.909 5.01 0.00 0.00 3.09
780 851 4.906065 ATCGGTATACAACGTCTTGCTA 57.094 40.909 5.01 0.00 0.00 3.49
781 852 3.795623 ATCGGTATACAACGTCTTGCT 57.204 42.857 5.01 0.00 0.00 3.91
782 853 7.807687 AATATATCGGTATACAACGTCTTGC 57.192 36.000 5.01 0.00 0.00 4.01
784 855 9.565213 GCTAAATATATCGGTATACAACGTCTT 57.435 33.333 5.01 0.00 0.00 3.01
785 856 7.907045 CGCTAAATATATCGGTATACAACGTCT 59.093 37.037 5.01 0.00 0.00 4.18
786 857 7.904977 TCGCTAAATATATCGGTATACAACGTC 59.095 37.037 5.01 0.00 0.00 4.34
787 858 7.751732 TCGCTAAATATATCGGTATACAACGT 58.248 34.615 5.01 0.00 0.00 3.99
788 859 8.118607 TCTCGCTAAATATATCGGTATACAACG 58.881 37.037 5.01 0.01 0.00 4.10
789 860 9.219497 GTCTCGCTAAATATATCGGTATACAAC 57.781 37.037 5.01 0.00 0.00 3.32
790 861 8.949177 TGTCTCGCTAAATATATCGGTATACAA 58.051 33.333 5.01 0.00 0.00 2.41
791 862 8.496707 TGTCTCGCTAAATATATCGGTATACA 57.503 34.615 5.01 0.00 0.00 2.29
792 863 9.947669 ATTGTCTCGCTAAATATATCGGTATAC 57.052 33.333 0.00 0.00 0.00 1.47
794 865 9.517609 GAATTGTCTCGCTAAATATATCGGTAT 57.482 33.333 0.00 0.00 0.00 2.73
795 866 8.737175 AGAATTGTCTCGCTAAATATATCGGTA 58.263 33.333 0.00 0.00 0.00 4.02
796 867 7.603651 AGAATTGTCTCGCTAAATATATCGGT 58.396 34.615 0.00 0.00 0.00 4.69
797 868 8.109843 GAGAATTGTCTCGCTAAATATATCGG 57.890 38.462 0.00 0.00 41.02 4.18
812 883 7.649705 CACACTATAGCGTATTGAGAATTGTCT 59.350 37.037 4.03 0.00 36.55 3.41
813 884 7.567771 GCACACTATAGCGTATTGAGAATTGTC 60.568 40.741 0.00 0.00 0.00 3.18
814 885 6.201044 GCACACTATAGCGTATTGAGAATTGT 59.799 38.462 0.00 0.00 0.00 2.71
815 886 6.422100 AGCACACTATAGCGTATTGAGAATTG 59.578 38.462 0.00 0.00 35.48 2.32
816 887 6.516718 AGCACACTATAGCGTATTGAGAATT 58.483 36.000 0.00 0.00 35.48 2.17
817 888 6.090483 AGCACACTATAGCGTATTGAGAAT 57.910 37.500 0.00 0.00 35.48 2.40
818 889 5.515797 AGCACACTATAGCGTATTGAGAA 57.484 39.130 0.00 0.00 35.48 2.87
819 890 6.819397 ATAGCACACTATAGCGTATTGAGA 57.181 37.500 0.00 0.00 37.33 3.27
820 891 7.219154 GCTAATAGCACACTATAGCGTATTGAG 59.781 40.741 7.49 0.00 41.89 3.02
821 892 7.027760 GCTAATAGCACACTATAGCGTATTGA 58.972 38.462 7.49 0.00 41.89 2.57
822 893 7.210813 GCTAATAGCACACTATAGCGTATTG 57.789 40.000 7.49 0.00 41.89 1.90
866 937 9.938280 ATTAGCACGCCTATATATCACTAAAAA 57.062 29.630 0.00 0.00 0.00 1.94
867 938 9.366216 CATTAGCACGCCTATATATCACTAAAA 57.634 33.333 0.00 0.00 0.00 1.52
868 939 7.491372 GCATTAGCACGCCTATATATCACTAAA 59.509 37.037 0.00 0.00 41.58 1.85
869 940 6.978659 GCATTAGCACGCCTATATATCACTAA 59.021 38.462 0.00 0.00 41.58 2.24
870 941 6.461092 GGCATTAGCACGCCTATATATCACTA 60.461 42.308 0.00 0.00 45.29 2.74
871 942 5.352284 GCATTAGCACGCCTATATATCACT 58.648 41.667 0.00 0.00 41.58 3.41
872 943 4.508124 GGCATTAGCACGCCTATATATCAC 59.492 45.833 0.00 0.00 45.29 3.06
873 944 4.693283 GGCATTAGCACGCCTATATATCA 58.307 43.478 0.00 0.00 45.29 2.15
1344 1664 8.763984 TCCTCTAACAAATACTCCTAGGTAAG 57.236 38.462 9.08 1.86 0.00 2.34
1347 1667 6.743788 ACTCCTCTAACAAATACTCCTAGGT 58.256 40.000 9.08 0.00 0.00 3.08
1382 1702 6.672593 TCAGTAAGCCCATATTCAATTTCCT 58.327 36.000 0.00 0.00 0.00 3.36
1388 1708 6.318648 GTGTTCATCAGTAAGCCCATATTCAA 59.681 38.462 0.00 0.00 0.00 2.69
1394 1714 2.027192 ACGTGTTCATCAGTAAGCCCAT 60.027 45.455 0.00 0.00 0.00 4.00
1395 1715 1.346395 ACGTGTTCATCAGTAAGCCCA 59.654 47.619 0.00 0.00 0.00 5.36
1397 1717 2.683968 TCACGTGTTCATCAGTAAGCC 58.316 47.619 16.51 0.00 0.00 4.35
1398 1718 4.725556 TTTCACGTGTTCATCAGTAAGC 57.274 40.909 16.51 0.00 0.00 3.09
1403 1723 7.521529 ACATAGATTTTTCACGTGTTCATCAG 58.478 34.615 16.51 9.38 0.00 2.90
1405 1725 7.803189 ACAACATAGATTTTTCACGTGTTCATC 59.197 33.333 16.51 12.48 0.00 2.92
1406 1726 7.648142 ACAACATAGATTTTTCACGTGTTCAT 58.352 30.769 16.51 3.78 0.00 2.57
1574 1915 1.981533 GTACGTACGAGGTTTCACTGC 59.018 52.381 24.41 0.00 0.00 4.40
1615 2469 3.945285 TGTCTGGACTGGTTTCTTTGTTC 59.055 43.478 2.38 0.00 0.00 3.18
1638 2928 1.545582 GTTGCTATGCTTTGCCTTGGA 59.454 47.619 3.74 0.00 0.00 3.53
1643 2933 0.174162 CCCAGTTGCTATGCTTTGCC 59.826 55.000 3.74 0.00 0.00 4.52
1649 2939 4.096732 CAACTTAACCCAGTTGCTATGC 57.903 45.455 0.83 0.00 45.43 3.14
1738 3211 8.642432 TGTGAGGGTATCATCTAGTAATCTTTG 58.358 37.037 0.00 0.00 40.92 2.77
1760 3233 5.008613 CCCGAAAAAGAAGAGAACATTGTGA 59.991 40.000 0.00 0.00 0.00 3.58
1761 3234 5.215160 CCCGAAAAAGAAGAGAACATTGTG 58.785 41.667 0.00 0.00 0.00 3.33
1762 3235 4.278419 CCCCGAAAAAGAAGAGAACATTGT 59.722 41.667 0.00 0.00 0.00 2.71
1763 3236 4.321230 CCCCCGAAAAAGAAGAGAACATTG 60.321 45.833 0.00 0.00 0.00 2.82
1765 3238 3.181433 ACCCCCGAAAAAGAAGAGAACAT 60.181 43.478 0.00 0.00 0.00 2.71
1766 3239 2.173996 ACCCCCGAAAAAGAAGAGAACA 59.826 45.455 0.00 0.00 0.00 3.18
1767 3240 2.860009 ACCCCCGAAAAAGAAGAGAAC 58.140 47.619 0.00 0.00 0.00 3.01
1768 3241 4.710313 TTACCCCCGAAAAAGAAGAGAA 57.290 40.909 0.00 0.00 0.00 2.87
1769 3242 4.506095 CCTTTACCCCCGAAAAAGAAGAGA 60.506 45.833 0.00 0.00 33.05 3.10
1770 3243 3.756963 CCTTTACCCCCGAAAAAGAAGAG 59.243 47.826 0.00 0.00 33.05 2.85
1771 3244 3.395273 TCCTTTACCCCCGAAAAAGAAGA 59.605 43.478 0.00 0.00 33.05 2.87
1772 3245 3.756963 CTCCTTTACCCCCGAAAAAGAAG 59.243 47.826 0.00 0.00 33.05 2.85
1773 3246 3.395273 TCTCCTTTACCCCCGAAAAAGAA 59.605 43.478 0.00 0.00 33.05 2.52
1774 3247 2.981081 TCTCCTTTACCCCCGAAAAAGA 59.019 45.455 0.00 0.00 33.05 2.52
1775 3248 3.428413 TCTCCTTTACCCCCGAAAAAG 57.572 47.619 0.00 0.00 0.00 2.27
1776 3249 3.880168 TTCTCCTTTACCCCCGAAAAA 57.120 42.857 0.00 0.00 0.00 1.94
1777 3250 4.391683 AATTCTCCTTTACCCCCGAAAA 57.608 40.909 0.00 0.00 0.00 2.29
1778 3251 4.391683 AAATTCTCCTTTACCCCCGAAA 57.608 40.909 0.00 0.00 0.00 3.46
1779 3252 4.391683 AAAATTCTCCTTTACCCCCGAA 57.608 40.909 0.00 0.00 0.00 4.30
1780 3253 4.391683 AAAAATTCTCCTTTACCCCCGA 57.608 40.909 0.00 0.00 0.00 5.14
1799 3272 3.735237 TGCTAAACAATCCGGCAAAAA 57.265 38.095 0.00 0.00 0.00 1.94
1800 3273 3.735237 TTGCTAAACAATCCGGCAAAA 57.265 38.095 0.00 0.00 39.45 2.44
1801 3274 3.951775 ATTGCTAAACAATCCGGCAAA 57.048 38.095 0.00 0.00 46.28 3.68
1802 3275 6.892658 ATATATTGCTAAACAATCCGGCAA 57.107 33.333 0.00 0.00 46.28 4.52
1803 3276 6.892658 AATATATTGCTAAACAATCCGGCA 57.107 33.333 0.00 0.00 46.28 5.69
1804 3277 8.512138 ACTTAATATATTGCTAAACAATCCGGC 58.488 33.333 8.28 0.00 46.28 6.13
1805 3278 9.825972 CACTTAATATATTGCTAAACAATCCGG 57.174 33.333 8.28 0.00 46.28 5.14
1829 3302 8.492673 TCATGTTCTATACAACCAATTCTCAC 57.507 34.615 0.00 0.00 40.89 3.51
1911 3387 7.069331 TGGGGAAATTGCCTAGTTATACAATTG 59.931 37.037 1.41 3.24 40.77 2.32
1912 3388 7.069455 GTGGGGAAATTGCCTAGTTATACAATT 59.931 37.037 1.41 0.00 42.81 2.32
1946 3422 9.146984 TCTGTAATTAATCTTTATATTCCCGCG 57.853 33.333 0.00 0.00 0.00 6.46
2022 3498 8.559536 AGAATGCAAGTACGGAATATTTACATG 58.440 33.333 0.00 0.00 0.00 3.21
2045 3521 5.048083 GTGAAATGCCCTGATTTACACAGAA 60.048 40.000 0.00 0.00 37.54 3.02
2056 3532 2.380064 AAGGTTGTGAAATGCCCTGA 57.620 45.000 0.00 0.00 0.00 3.86
2170 3646 4.348461 TCCCACTTCACCATACACTAACAA 59.652 41.667 0.00 0.00 0.00 2.83
2196 3673 4.768448 TCACCAATTCTCTCAACATGCAAT 59.232 37.500 0.00 0.00 0.00 3.56
2207 3684 8.506083 ACCTTATTCCATTATCACCAATTCTCT 58.494 33.333 0.00 0.00 0.00 3.10
2261 3740 1.660560 GGTGTGCCACATCAGCATCC 61.661 60.000 2.49 0.00 43.29 3.51
2266 3745 1.092348 CATCAGGTGTGCCACATCAG 58.908 55.000 11.29 1.96 35.86 2.90
2270 3749 1.376086 CCTCATCAGGTGTGCCACA 59.624 57.895 0.00 0.00 35.86 4.17
2280 3759 1.329906 GCAAGCGATTCACCTCATCAG 59.670 52.381 0.00 0.00 0.00 2.90
2283 3762 1.674441 CATGCAAGCGATTCACCTCAT 59.326 47.619 0.00 0.00 0.00 2.90
2294 3773 3.482722 AATTCTCTCAACATGCAAGCG 57.517 42.857 0.00 0.00 0.00 4.68
2369 3849 6.587206 TGGAAACATGCATGAGAATTTACA 57.413 33.333 32.75 23.82 33.40 2.41
2424 3904 3.549625 GGAGAAAGCTTCAGCACAACAAG 60.550 47.826 0.00 0.00 45.16 3.16
2433 3913 2.753452 ACATGCATGGAGAAAGCTTCAG 59.247 45.455 29.41 0.42 31.80 3.02
2436 3916 3.159472 TCAACATGCATGGAGAAAGCTT 58.841 40.909 29.41 10.11 0.00 3.74
2437 3917 2.799017 TCAACATGCATGGAGAAAGCT 58.201 42.857 29.41 3.93 0.00 3.74
2438 3918 3.581024 TTCAACATGCATGGAGAAAGC 57.419 42.857 29.41 0.00 0.00 3.51
2443 3923 4.261614 CCTCATGATTCAACATGCATGGAG 60.262 45.833 29.41 20.60 44.79 3.86
2445 3925 3.383505 ACCTCATGATTCAACATGCATGG 59.616 43.478 29.41 13.66 44.79 3.66
2494 3974 8.743636 ATCTAAATAGCTAGACCCCACTAATT 57.256 34.615 0.00 0.00 30.76 1.40
2500 3980 6.183361 TGGAGTATCTAAATAGCTAGACCCCA 60.183 42.308 0.00 0.00 30.76 4.96
2503 3983 8.862085 ACTTTGGAGTATCTAAATAGCTAGACC 58.138 37.037 0.00 0.00 44.70 3.85
2508 3988 9.649316 AGAGTACTTTGGAGTATCTAAATAGCT 57.351 33.333 0.00 0.00 44.70 3.32
2513 3993 7.093465 CCACCAGAGTACTTTGGAGTATCTAAA 60.093 40.741 33.04 0.00 43.57 1.85
2521 4001 1.673033 CGCCACCAGAGTACTTTGGAG 60.673 57.143 33.04 25.97 37.89 3.86
2522 4002 0.320374 CGCCACCAGAGTACTTTGGA 59.680 55.000 33.04 0.00 37.89 3.53
2551 4041 4.155826 TGGCTAGTTCAACACATACATTGC 59.844 41.667 0.00 0.00 0.00 3.56
2555 4045 3.689161 GCATGGCTAGTTCAACACATACA 59.311 43.478 0.00 0.00 0.00 2.29
2746 4350 1.878102 GCAAGAGCTTCGAGGGTTCAA 60.878 52.381 0.00 0.00 37.91 2.69
2755 4359 4.157958 GCCGCTGCAAGAGCTTCG 62.158 66.667 0.00 0.00 46.64 3.79
2778 4385 2.489619 GCCTCCAGCAATAATGGGATCA 60.490 50.000 0.00 0.00 42.97 2.92
2781 4388 3.827505 GCCTCCAGCAATAATGGGA 57.172 52.632 0.00 0.00 42.97 4.37
2863 4471 2.125912 CCGGTCCTCAGTCGCAAG 60.126 66.667 0.00 0.00 0.00 4.01
2869 4477 0.693049 ATTTGCTTCCGGTCCTCAGT 59.307 50.000 0.00 0.00 0.00 3.41
2871 4479 0.690192 TGATTTGCTTCCGGTCCTCA 59.310 50.000 0.00 0.00 0.00 3.86
2913 4521 3.751175 CGTTTAAGGACTCAGATTTGCCA 59.249 43.478 0.00 0.00 0.00 4.92
2915 4523 3.426292 GGCGTTTAAGGACTCAGATTTGC 60.426 47.826 0.00 0.00 0.00 3.68
2922 4530 1.375013 GCGGGCGTTTAAGGACTCA 60.375 57.895 0.00 0.00 0.00 3.41
2925 4533 3.493440 CCGCGGGCGTTTAAGGAC 61.493 66.667 20.10 0.00 37.81 3.85
2926 4534 3.021473 ATCCGCGGGCGTTTAAGGA 62.021 57.895 27.83 0.77 37.81 3.36
2962 4570 4.142249 TGACATATAACTGGTCACTGTCCG 60.142 45.833 0.00 0.00 36.69 4.79
3121 5301 1.271163 CCGGTGTCCATACCAACACTT 60.271 52.381 0.00 0.00 44.12 3.16
3129 5496 0.457035 TACTTCGCCGGTGTCCATAC 59.543 55.000 16.01 0.00 0.00 2.39
3131 5498 0.968901 TCTACTTCGCCGGTGTCCAT 60.969 55.000 16.01 2.03 0.00 3.41
3132 5499 0.968901 ATCTACTTCGCCGGTGTCCA 60.969 55.000 16.01 0.00 0.00 4.02
3135 5502 1.407979 CCTAATCTACTTCGCCGGTGT 59.592 52.381 16.01 5.87 0.00 4.16
3137 5504 1.680207 GTCCTAATCTACTTCGCCGGT 59.320 52.381 1.90 0.00 0.00 5.28
3145 5512 3.637229 CGTGTCCCATGTCCTAATCTACT 59.363 47.826 0.00 0.00 0.00 2.57
3201 5652 0.771127 TGGTAGGAATAGGGCATGGC 59.229 55.000 11.56 11.56 0.00 4.40
3242 6136 2.851071 CGAGGAGGAGATGACCGGC 61.851 68.421 0.00 0.00 34.73 6.13
3243 6137 2.196925 CCGAGGAGGAGATGACCGG 61.197 68.421 0.00 0.00 45.00 5.28
3259 6153 4.758251 TCATCACACGCAGCCCCG 62.758 66.667 0.00 0.00 0.00 5.73
3271 6165 4.426971 TCGACCCCGAACTCATCA 57.573 55.556 0.00 0.00 42.51 3.07
3343 6237 2.809706 CTCCCGTCCGGCGATTTA 59.190 61.111 17.96 2.03 44.77 1.40
3382 6286 2.038557 TCAAACCCTAGCCACTTCACTC 59.961 50.000 0.00 0.00 0.00 3.51
3383 6287 2.054799 TCAAACCCTAGCCACTTCACT 58.945 47.619 0.00 0.00 0.00 3.41
3384 6288 2.561478 TCAAACCCTAGCCACTTCAC 57.439 50.000 0.00 0.00 0.00 3.18
3385 6289 2.026262 GGATCAAACCCTAGCCACTTCA 60.026 50.000 0.00 0.00 0.00 3.02
3386 6290 2.644676 GGATCAAACCCTAGCCACTTC 58.355 52.381 0.00 0.00 0.00 3.01
3387 6291 1.065418 CGGATCAAACCCTAGCCACTT 60.065 52.381 0.00 0.00 0.00 3.16
3388 6292 0.541863 CGGATCAAACCCTAGCCACT 59.458 55.000 0.00 0.00 0.00 4.00
3389 6293 0.463833 CCGGATCAAACCCTAGCCAC 60.464 60.000 0.00 0.00 0.00 5.01
3390 6294 1.632018 CCCGGATCAAACCCTAGCCA 61.632 60.000 0.73 0.00 0.00 4.75
3391 6295 1.148498 CCCGGATCAAACCCTAGCC 59.852 63.158 0.73 0.00 0.00 3.93
3511 6428 1.705002 CCGGCACCCCTCATATCCAA 61.705 60.000 0.00 0.00 0.00 3.53
3561 6478 2.452006 AAAAGCGACACAAACAGACG 57.548 45.000 0.00 0.00 0.00 4.18
3626 6544 4.334837 GAGCATCTACAGCCGAGC 57.665 61.111 0.00 0.00 0.00 5.03
3685 6603 1.925255 AGAATGGCCCTTGGAGAATGA 59.075 47.619 0.00 0.00 0.00 2.57
3810 6737 6.861065 TTGTGTTGATTAGAAGGACTTGTC 57.139 37.500 0.00 0.00 0.00 3.18
3859 6786 2.092699 AGAGCTTAGGAACCTGATTGCC 60.093 50.000 3.36 0.00 0.00 4.52
3937 6864 5.769662 TGAAGTTGTTGCAATATCTCCTTGT 59.230 36.000 0.59 0.00 0.00 3.16
3998 6925 5.023452 GGGGATTAGGGTTCAGACAAATTT 58.977 41.667 0.00 0.00 0.00 1.82
4001 6928 2.990284 TGGGGATTAGGGTTCAGACAAA 59.010 45.455 0.00 0.00 0.00 2.83
4045 6972 6.712095 ACTCATTTCATTAACTGCAGACTGAA 59.288 34.615 23.35 18.35 0.00 3.02
4049 6976 6.580041 CACAACTCATTTCATTAACTGCAGAC 59.420 38.462 23.35 0.00 0.00 3.51
4109 7036 9.661563 TTGACATACTTTTACCCTACTTGTATG 57.338 33.333 0.00 0.00 40.57 2.39
4119 7046 7.485810 AGTGTTTGTTTGACATACTTTTACCC 58.514 34.615 0.00 0.00 32.41 3.69
4361 9538 5.351740 GCAAGATACTTGGAGGAAGTGTTAC 59.648 44.000 12.36 0.00 45.05 2.50
4408 9585 0.540365 TATAAGAGTACCCCCGGCGG 60.540 60.000 21.46 21.46 0.00 6.13
4409 9586 1.331214 TTATAAGAGTACCCCCGGCG 58.669 55.000 0.00 0.00 0.00 6.46
4571 10153 4.154918 GTCACCTCAATAGTCTTTGCAAGG 59.845 45.833 1.35 1.35 30.61 3.61
4621 11455 0.318784 AAACTGAGCTGGTCGTCGAC 60.319 55.000 17.16 17.16 0.00 4.20
4773 11631 1.001406 AGAGTAAGTCACTGCTGTGCC 59.999 52.381 18.11 7.79 43.49 5.01
4794 11655 3.320541 TGTCGAACAATTTGGCTGGAAAT 59.679 39.130 0.78 0.00 0.00 2.17
4837 11719 0.594796 CCCACACTGCGCAAAGAAAC 60.595 55.000 13.05 0.00 0.00 2.78
4874 11764 1.070289 GTGAACTTCCCGACTTGGTCT 59.930 52.381 0.00 0.00 35.15 3.85
4901 11791 1.918957 CCCTTCCCCATCTTCTTGACT 59.081 52.381 0.00 0.00 0.00 3.41
5246 12447 1.693627 GATCTCGGCTGAGGTCCTTA 58.306 55.000 23.25 3.12 45.08 2.69
5247 12448 2.510664 GATCTCGGCTGAGGTCCTT 58.489 57.895 23.25 3.85 45.08 3.36
5370 12573 4.971830 CGACACGTTACTGTCTCAAGTAAA 59.028 41.667 11.14 0.00 42.68 2.01
5379 12584 0.713883 CATGCCGACACGTTACTGTC 59.286 55.000 0.00 5.35 37.75 3.51
5411 12620 0.233590 CCGAAAATCAACGACACGCA 59.766 50.000 0.00 0.00 0.00 5.24
5445 12661 2.509336 GCAGCACGCCGTGTCTAT 60.509 61.111 19.57 0.00 35.75 1.98
5470 12686 2.970974 GAGGAGTTGCACTTGCCGC 61.971 63.158 0.00 0.00 41.18 6.53
5684 12916 9.685828 TGGAAATTAAGTTTTTGGTTCGATAAG 57.314 29.630 0.00 0.00 0.00 1.73
5731 12963 6.908870 AAAACTCAGAATTTGTTTGGAAGC 57.091 33.333 0.00 0.00 34.63 3.86
5773 13006 9.728100 TTTAGGAAATTAAATTCTGGGGATCAT 57.272 29.630 3.38 0.00 0.00 2.45
5774 13007 9.200817 CTTTAGGAAATTAAATTCTGGGGATCA 57.799 33.333 3.38 0.00 0.00 2.92
5800 13033 6.669278 ACGAGAGAAATAACAAAAGGAAAGC 58.331 36.000 0.00 0.00 0.00 3.51
5828 13061 6.658831 CCGAAATGAGATTTACATACGCAAT 58.341 36.000 0.00 0.00 31.47 3.56
5856 13272 8.838452 TGACAATTGAAATGTTTTTGAAATGC 57.162 26.923 13.59 0.00 26.18 3.56
5907 13323 1.062002 CGGTACAATCCGTGAACATGC 59.938 52.381 0.00 0.00 44.77 4.06
5965 13381 4.142622 ACGCTTCCATATTTCACACATGTG 60.143 41.667 24.25 24.25 46.91 3.21
5966 13382 4.009675 ACGCTTCCATATTTCACACATGT 58.990 39.130 0.00 0.00 0.00 3.21
5967 13383 4.621068 ACGCTTCCATATTTCACACATG 57.379 40.909 0.00 0.00 0.00 3.21
5968 13384 5.235305 GAACGCTTCCATATTTCACACAT 57.765 39.130 0.00 0.00 0.00 3.21
5969 13385 4.678509 GAACGCTTCCATATTTCACACA 57.321 40.909 0.00 0.00 0.00 3.72
6115 13538 7.832769 AGAGCTGGTTTGTTGTTTAACTTTTA 58.167 30.769 0.00 0.00 37.68 1.52
6191 13627 5.584649 AGTGTTAAACATCATATGGTCACGG 59.415 40.000 2.13 0.00 33.60 4.94
6312 13748 3.139025 AGATCCGGTTCATTCCATCCAAT 59.861 43.478 14.83 0.00 0.00 3.16
6468 13904 2.819608 TGAGCTTGGAATACTGCAAACC 59.180 45.455 0.00 0.00 31.84 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.