Multiple sequence alignment - TraesCS2D01G402600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G402600
chr2D
100.000
2414
0
0
1
2414
517399824
517397411
0.000000e+00
4458
1
TraesCS2D01G402600
chr2D
91.625
1982
111
23
18
1966
423361703
423359744
0.000000e+00
2689
2
TraesCS2D01G402600
chr2D
91.160
1810
118
23
29
1820
215733139
215731354
0.000000e+00
2418
3
TraesCS2D01G402600
chr2D
93.284
1474
76
8
18
1470
600489990
600488519
0.000000e+00
2152
4
TraesCS2D01G402600
chr2D
90.229
1658
109
18
18
1654
409562431
409560806
0.000000e+00
2115
5
TraesCS2D01G402600
chr2D
94.584
1274
51
9
565
1820
260387532
260386259
0.000000e+00
1954
6
TraesCS2D01G402600
chr2D
95.270
444
21
0
1821
2264
422704377
422704820
0.000000e+00
704
7
TraesCS2D01G402600
chr1D
95.024
2251
96
7
18
2264
449355527
449357765
0.000000e+00
3522
8
TraesCS2D01G402600
chr1D
92.908
1833
95
18
18
1820
194854481
194852654
0.000000e+00
2632
9
TraesCS2D01G402600
chr1D
91.198
943
54
10
18
943
387382358
387381428
0.000000e+00
1254
10
TraesCS2D01G402600
chr1D
94.808
443
23
0
1821
2263
194852603
194852161
0.000000e+00
691
11
TraesCS2D01G402600
chr1D
90.618
469
30
7
1805
2263
63847758
63847294
5.710000e-171
610
12
TraesCS2D01G402600
chr1D
96.732
153
3
1
2264
2414
156262298
156262450
1.110000e-63
254
13
TraesCS2D01G402600
chr6D
94.175
2266
99
9
18
2264
464756833
464759084
0.000000e+00
3422
14
TraesCS2D01G402600
chr6D
94.820
444
23
0
1821
2264
273132434
273132877
0.000000e+00
693
15
TraesCS2D01G402600
chr6D
97.386
153
2
1
2264
2414
93399595
93399443
2.380000e-65
259
16
TraesCS2D01G402600
chr6D
97.386
153
2
1
2264
2414
304794677
304794829
2.380000e-65
259
17
TraesCS2D01G402600
chr6D
96.732
153
3
1
2264
2414
220454227
220454379
1.110000e-63
254
18
TraesCS2D01G402600
chr6D
96.732
153
3
1
2264
2414
255277298
255277450
1.110000e-63
254
19
TraesCS2D01G402600
chr6D
96.732
153
3
1
2264
2414
407102519
407102367
1.110000e-63
254
20
TraesCS2D01G402600
chr4D
91.019
1815
108
38
18
1820
253646378
253648149
0.000000e+00
2398
21
TraesCS2D01G402600
chr4D
89.740
1657
113
20
18
1654
14237820
14239439
0.000000e+00
2065
22
TraesCS2D01G402600
chr4D
94.076
1283
52
12
559
1820
65498838
65497559
0.000000e+00
1927
23
TraesCS2D01G402600
chr4D
94.655
711
30
1
1554
2264
359752933
359753635
0.000000e+00
1096
24
TraesCS2D01G402600
chr4D
98.039
153
1
1
2264
2414
347307083
347307235
5.120000e-67
265
25
TraesCS2D01G402600
chr5D
90.324
1819
123
27
18
1820
311825297
311827078
0.000000e+00
2335
26
TraesCS2D01G402600
chr5D
89.508
1706
115
29
18
1691
434733263
434734936
0.000000e+00
2100
27
TraesCS2D01G402600
chr5D
94.856
797
33
3
1475
2264
101945670
101946465
0.000000e+00
1238
28
TraesCS2D01G402600
chr5D
93.709
461
26
2
1805
2264
405358526
405358984
0.000000e+00
688
29
TraesCS2D01G402600
chr5D
98.658
149
0
1
2264
2410
459030968
459031116
1.840000e-66
263
30
TraesCS2D01G402600
chr3D
90.247
1661
106
19
18
1654
356669824
356671452
0.000000e+00
2119
31
TraesCS2D01G402600
chr3D
93.833
454
27
1
1812
2264
349442917
349442464
0.000000e+00
682
32
TraesCS2D01G402600
chr3D
89.614
337
22
7
1805
2130
219233052
219233386
1.340000e-112
416
33
TraesCS2D01G402600
chr3B
89.161
1550
106
23
18
1548
420729340
420730846
0.000000e+00
1875
34
TraesCS2D01G402600
chr7D
92.641
462
31
3
1805
2264
115813791
115814251
0.000000e+00
662
35
TraesCS2D01G402600
chr7D
92.408
461
33
2
1805
2264
536111498
536111039
0.000000e+00
656
36
TraesCS2D01G402600
chr7D
97.386
153
2
1
2264
2414
547156936
547156784
2.380000e-65
259
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G402600
chr2D
517397411
517399824
2413
True
4458.0
4458
100.000
1
2414
1
chr2D.!!$R5
2413
1
TraesCS2D01G402600
chr2D
423359744
423361703
1959
True
2689.0
2689
91.625
18
1966
1
chr2D.!!$R4
1948
2
TraesCS2D01G402600
chr2D
215731354
215733139
1785
True
2418.0
2418
91.160
29
1820
1
chr2D.!!$R1
1791
3
TraesCS2D01G402600
chr2D
600488519
600489990
1471
True
2152.0
2152
93.284
18
1470
1
chr2D.!!$R6
1452
4
TraesCS2D01G402600
chr2D
409560806
409562431
1625
True
2115.0
2115
90.229
18
1654
1
chr2D.!!$R3
1636
5
TraesCS2D01G402600
chr2D
260386259
260387532
1273
True
1954.0
1954
94.584
565
1820
1
chr2D.!!$R2
1255
6
TraesCS2D01G402600
chr1D
449355527
449357765
2238
False
3522.0
3522
95.024
18
2264
1
chr1D.!!$F2
2246
7
TraesCS2D01G402600
chr1D
194852161
194854481
2320
True
1661.5
2632
93.858
18
2263
2
chr1D.!!$R3
2245
8
TraesCS2D01G402600
chr1D
387381428
387382358
930
True
1254.0
1254
91.198
18
943
1
chr1D.!!$R2
925
9
TraesCS2D01G402600
chr6D
464756833
464759084
2251
False
3422.0
3422
94.175
18
2264
1
chr6D.!!$F5
2246
10
TraesCS2D01G402600
chr4D
253646378
253648149
1771
False
2398.0
2398
91.019
18
1820
1
chr4D.!!$F2
1802
11
TraesCS2D01G402600
chr4D
14237820
14239439
1619
False
2065.0
2065
89.740
18
1654
1
chr4D.!!$F1
1636
12
TraesCS2D01G402600
chr4D
65497559
65498838
1279
True
1927.0
1927
94.076
559
1820
1
chr4D.!!$R1
1261
13
TraesCS2D01G402600
chr4D
359752933
359753635
702
False
1096.0
1096
94.655
1554
2264
1
chr4D.!!$F4
710
14
TraesCS2D01G402600
chr5D
311825297
311827078
1781
False
2335.0
2335
90.324
18
1820
1
chr5D.!!$F2
1802
15
TraesCS2D01G402600
chr5D
434733263
434734936
1673
False
2100.0
2100
89.508
18
1691
1
chr5D.!!$F4
1673
16
TraesCS2D01G402600
chr5D
101945670
101946465
795
False
1238.0
1238
94.856
1475
2264
1
chr5D.!!$F1
789
17
TraesCS2D01G402600
chr3D
356669824
356671452
1628
False
2119.0
2119
90.247
18
1654
1
chr3D.!!$F2
1636
18
TraesCS2D01G402600
chr3B
420729340
420730846
1506
False
1875.0
1875
89.161
18
1548
1
chr3B.!!$F1
1530
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
559
579
0.100325
TTTTGTGAACGTGCTGGCTG
59.9
50.0
0.0
0.0
0.0
4.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2367
2790
0.034616
CCTCCGCCAGAGATTCCATC
59.965
60.0
0.0
0.0
46.5
3.51
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
103
107
9.642343
AGACCAAGTTTAGTATTTTTCCTCTTT
57.358
29.630
0.00
0.00
0.00
2.52
229
236
1.536644
AACCCCTCTAAACCCCACAA
58.463
50.000
0.00
0.00
0.00
3.33
290
297
1.686325
ATACCCTCGCGCCAAGTGAT
61.686
55.000
0.00
0.00
38.87
3.06
452
459
1.534476
TCGCCCACCACTAACTCCA
60.534
57.895
0.00
0.00
0.00
3.86
512
530
1.523154
GGTTGGGCTGTCGAATTGCA
61.523
55.000
7.64
0.00
0.00
4.08
519
539
3.514645
GGCTGTCGAATTGCATCATTTT
58.485
40.909
7.64
0.00
0.00
1.82
520
540
3.928375
GGCTGTCGAATTGCATCATTTTT
59.072
39.130
7.64
0.00
0.00
1.94
557
577
3.337398
TTTTTGTGAACGTGCTGGC
57.663
47.368
0.00
0.00
0.00
4.85
558
578
0.814457
TTTTTGTGAACGTGCTGGCT
59.186
45.000
0.00
0.00
0.00
4.75
559
579
0.100325
TTTTGTGAACGTGCTGGCTG
59.900
50.000
0.00
0.00
0.00
4.85
560
580
1.029408
TTTGTGAACGTGCTGGCTGT
61.029
50.000
0.00
0.00
0.00
4.40
561
581
1.713937
TTGTGAACGTGCTGGCTGTG
61.714
55.000
0.00
0.00
0.00
3.66
562
582
2.180204
GTGAACGTGCTGGCTGTGT
61.180
57.895
0.00
0.00
0.00
3.72
563
583
0.878523
GTGAACGTGCTGGCTGTGTA
60.879
55.000
0.00
0.00
0.00
2.90
574
682
3.367703
GCTGGCTGTGTATTTTTGCATCT
60.368
43.478
0.00
0.00
0.00
2.90
578
686
6.753180
TGGCTGTGTATTTTTGCATCTTTTA
58.247
32.000
0.00
0.00
0.00
1.52
579
687
7.385267
TGGCTGTGTATTTTTGCATCTTTTAT
58.615
30.769
0.00
0.00
0.00
1.40
581
689
8.720562
GGCTGTGTATTTTTGCATCTTTTATTT
58.279
29.630
0.00
0.00
0.00
1.40
701
945
3.420300
TCATGCAAAATGGCCACAAAT
57.580
38.095
8.16
0.00
0.00
2.32
770
1046
7.803189
CGTGCAATTAGCTTCTTTTTCTTCTTA
59.197
33.333
0.00
0.00
45.94
2.10
829
1105
0.457851
TGTTGCGGTGGGTTTGAAAG
59.542
50.000
0.00
0.00
0.00
2.62
871
1154
0.731174
CGTTATTGCCACGGCCAAAC
60.731
55.000
2.24
6.43
41.09
2.93
920
1203
2.071262
CCTCTGCCTCTGCCATCCT
61.071
63.158
0.00
0.00
36.33
3.24
925
1208
0.182061
TGCCTCTGCCATCCTTCATC
59.818
55.000
0.00
0.00
36.33
2.92
926
1209
0.536915
GCCTCTGCCATCCTTCATCC
60.537
60.000
0.00
0.00
0.00
3.51
927
1210
0.841961
CCTCTGCCATCCTTCATCCA
59.158
55.000
0.00
0.00
0.00
3.41
928
1211
1.424302
CCTCTGCCATCCTTCATCCAT
59.576
52.381
0.00
0.00
0.00
3.41
929
1212
2.552591
CCTCTGCCATCCTTCATCCATC
60.553
54.545
0.00
0.00
0.00
3.51
930
1213
2.372504
CTCTGCCATCCTTCATCCATCT
59.627
50.000
0.00
0.00
0.00
2.90
931
1214
2.371179
TCTGCCATCCTTCATCCATCTC
59.629
50.000
0.00
0.00
0.00
2.75
932
1215
1.422781
TGCCATCCTTCATCCATCTCC
59.577
52.381
0.00
0.00
0.00
3.71
933
1216
1.271817
GCCATCCTTCATCCATCTCCC
60.272
57.143
0.00
0.00
0.00
4.30
934
1217
2.060275
CCATCCTTCATCCATCTCCCA
58.940
52.381
0.00
0.00
0.00
4.37
935
1218
2.648304
CCATCCTTCATCCATCTCCCAT
59.352
50.000
0.00
0.00
0.00
4.00
936
1219
3.308259
CCATCCTTCATCCATCTCCCATC
60.308
52.174
0.00
0.00
0.00
3.51
937
1220
2.342659
TCCTTCATCCATCTCCCATCC
58.657
52.381
0.00
0.00
0.00
3.51
938
1221
2.089753
TCCTTCATCCATCTCCCATCCT
60.090
50.000
0.00
0.00
0.00
3.24
939
1222
2.305343
CCTTCATCCATCTCCCATCCTC
59.695
54.545
0.00
0.00
0.00
3.71
940
1223
3.249752
CTTCATCCATCTCCCATCCTCT
58.750
50.000
0.00
0.00
0.00
3.69
941
1224
2.899975
TCATCCATCTCCCATCCTCTC
58.100
52.381
0.00
0.00
0.00
3.20
942
1225
2.453991
TCATCCATCTCCCATCCTCTCT
59.546
50.000
0.00
0.00
0.00
3.10
943
1226
2.395336
TCCATCTCCCATCCTCTCTG
57.605
55.000
0.00
0.00
0.00
3.35
1111
1454
1.341877
TGTGGGCAATATCAAGGTGGG
60.342
52.381
0.00
0.00
0.00
4.61
1190
1533
1.143889
GGGATCTCCAAGGATGTTCCC
59.856
57.143
12.62
12.62
35.72
3.97
1236
1579
1.073897
GGTGGTTGCTCTCCTTGCT
59.926
57.895
0.00
0.00
0.00
3.91
1359
1702
1.303236
CAACATCTTCCCCACCGCA
60.303
57.895
0.00
0.00
0.00
5.69
1543
1902
2.103771
TGTGAGAGATGCTATGGGCTTC
59.896
50.000
0.00
0.00
43.00
3.86
1718
2084
1.100510
CTAGTGCATGCAGCCACAAT
58.899
50.000
23.41
0.00
44.83
2.71
1850
2266
1.423395
GAGACAAGTGTGCGAGAAGG
58.577
55.000
0.00
0.00
0.00
3.46
1996
2412
2.730094
CAGGCTTGTTGGGTGCAC
59.270
61.111
8.80
8.80
0.00
4.57
2005
2421
1.602041
TTGGGTGCACGCATAGCAA
60.602
52.632
33.62
18.10
44.64
3.91
2097
2513
0.777446
AACAGCTACACCCCCAACAT
59.223
50.000
0.00
0.00
0.00
2.71
2125
2541
2.852748
CTCGTCAGAGTTAACGGTCAG
58.147
52.381
0.00
0.00
39.60
3.51
2130
2546
2.826128
TCAGAGTTAACGGTCAGAGCAT
59.174
45.455
0.00
0.00
0.00
3.79
2194
2617
0.178964
TGCAAGGGAGTGGGGAAAAG
60.179
55.000
0.00
0.00
0.00
2.27
2264
2687
3.763360
CAGGGGCACAGATGTAAAAATCA
59.237
43.478
0.00
0.00
0.00
2.57
2265
2688
4.220382
CAGGGGCACAGATGTAAAAATCAA
59.780
41.667
0.00
0.00
0.00
2.57
2266
2689
4.837860
AGGGGCACAGATGTAAAAATCAAA
59.162
37.500
0.00
0.00
0.00
2.69
2267
2690
5.484998
AGGGGCACAGATGTAAAAATCAAAT
59.515
36.000
0.00
0.00
0.00
2.32
2268
2691
5.581874
GGGGCACAGATGTAAAAATCAAATG
59.418
40.000
0.00
0.00
0.00
2.32
2269
2692
6.165577
GGGCACAGATGTAAAAATCAAATGT
58.834
36.000
0.00
0.00
0.00
2.71
2270
2693
7.319646
GGGCACAGATGTAAAAATCAAATGTA
58.680
34.615
0.00
0.00
0.00
2.29
2271
2694
7.489113
GGGCACAGATGTAAAAATCAAATGTAG
59.511
37.037
0.00
0.00
0.00
2.74
2272
2695
7.009540
GGCACAGATGTAAAAATCAAATGTAGC
59.990
37.037
0.00
0.00
0.00
3.58
2273
2696
7.541783
GCACAGATGTAAAAATCAAATGTAGCA
59.458
33.333
0.00
0.00
0.00
3.49
2274
2697
9.409312
CACAGATGTAAAAATCAAATGTAGCAA
57.591
29.630
0.00
0.00
0.00
3.91
2302
2725
8.732746
TTTAGAATATGTTCAGGAAAGTAGGC
57.267
34.615
4.92
0.00
36.79
3.93
2303
2726
5.685728
AGAATATGTTCAGGAAAGTAGGCC
58.314
41.667
4.92
0.00
36.79
5.19
2304
2727
5.191722
AGAATATGTTCAGGAAAGTAGGCCA
59.808
40.000
5.01
0.00
36.79
5.36
2305
2728
5.653255
ATATGTTCAGGAAAGTAGGCCAT
57.347
39.130
5.01
0.00
0.00
4.40
2306
2729
3.071874
TGTTCAGGAAAGTAGGCCATG
57.928
47.619
5.01
0.00
0.00
3.66
2307
2730
1.745653
GTTCAGGAAAGTAGGCCATGC
59.254
52.381
5.01
0.00
0.00
4.06
2319
2742
3.944871
GCCATGCCAACCGATTTAG
57.055
52.632
0.00
0.00
0.00
1.85
2320
2743
0.385390
GCCATGCCAACCGATTTAGG
59.615
55.000
0.00
0.00
37.30
2.69
2321
2744
1.032014
CCATGCCAACCGATTTAGGG
58.968
55.000
0.00
0.00
35.02
3.53
2322
2745
1.684869
CCATGCCAACCGATTTAGGGT
60.685
52.381
0.00
0.00
40.20
4.34
2330
2753
4.837093
AACCGATTTAGGGTGAGATTGA
57.163
40.909
0.00
0.00
37.96
2.57
2331
2754
4.837093
ACCGATTTAGGGTGAGATTGAA
57.163
40.909
0.00
0.00
36.14
2.69
2332
2755
4.514401
ACCGATTTAGGGTGAGATTGAAC
58.486
43.478
0.00
0.00
36.14
3.18
2333
2756
4.019681
ACCGATTTAGGGTGAGATTGAACA
60.020
41.667
0.00
0.00
36.14
3.18
2334
2757
5.126067
CCGATTTAGGGTGAGATTGAACAT
58.874
41.667
0.00
0.00
0.00
2.71
2335
2758
6.126883
ACCGATTTAGGGTGAGATTGAACATA
60.127
38.462
0.00
0.00
36.14
2.29
2336
2759
6.202954
CCGATTTAGGGTGAGATTGAACATAC
59.797
42.308
0.00
0.00
0.00
2.39
2337
2760
6.202954
CGATTTAGGGTGAGATTGAACATACC
59.797
42.308
0.00
0.00
0.00
2.73
2338
2761
3.543680
AGGGTGAGATTGAACATACCG
57.456
47.619
0.00
0.00
0.00
4.02
2339
2762
1.940613
GGGTGAGATTGAACATACCGC
59.059
52.381
0.00
0.00
0.00
5.68
2340
2763
1.593006
GGTGAGATTGAACATACCGCG
59.407
52.381
0.00
0.00
0.00
6.46
2341
2764
1.004927
GTGAGATTGAACATACCGCGC
60.005
52.381
0.00
0.00
0.00
6.86
2342
2765
0.229753
GAGATTGAACATACCGCGCG
59.770
55.000
25.67
25.67
0.00
6.86
2343
2766
0.459585
AGATTGAACATACCGCGCGT
60.460
50.000
29.95
18.85
0.00
6.01
2344
2767
0.043310
GATTGAACATACCGCGCGTC
60.043
55.000
29.95
18.62
0.00
5.19
2345
2768
1.426041
ATTGAACATACCGCGCGTCC
61.426
55.000
29.95
9.43
0.00
4.79
2346
2769
2.202703
GAACATACCGCGCGTCCT
60.203
61.111
29.95
13.06
0.00
3.85
2347
2770
2.202703
AACATACCGCGCGTCCTC
60.203
61.111
29.95
0.00
0.00
3.71
2348
2771
2.877360
GAACATACCGCGCGTCCTCA
62.877
60.000
29.95
8.80
0.00
3.86
2349
2772
2.202690
CATACCGCGCGTCCTCAA
60.203
61.111
29.95
7.25
0.00
3.02
2350
2773
2.104331
ATACCGCGCGTCCTCAAG
59.896
61.111
29.95
13.89
0.00
3.02
2351
2774
2.707849
ATACCGCGCGTCCTCAAGT
61.708
57.895
29.95
19.20
0.00
3.16
2352
2775
2.884087
ATACCGCGCGTCCTCAAGTG
62.884
60.000
29.95
12.30
0.00
3.16
2353
2776
4.717629
CCGCGCGTCCTCAAGTGA
62.718
66.667
29.95
0.00
0.00
3.41
2354
2777
2.507102
CGCGCGTCCTCAAGTGAT
60.507
61.111
24.19
0.00
0.00
3.06
2355
2778
2.508891
CGCGCGTCCTCAAGTGATC
61.509
63.158
24.19
0.00
0.00
2.92
2356
2779
1.153745
GCGCGTCCTCAAGTGATCT
60.154
57.895
8.43
0.00
0.00
2.75
2357
2780
1.416813
GCGCGTCCTCAAGTGATCTG
61.417
60.000
8.43
0.00
0.00
2.90
2358
2781
0.803768
CGCGTCCTCAAGTGATCTGG
60.804
60.000
0.00
0.00
0.00
3.86
2359
2782
0.247736
GCGTCCTCAAGTGATCTGGT
59.752
55.000
0.00
0.00
0.00
4.00
2360
2783
1.476891
GCGTCCTCAAGTGATCTGGTA
59.523
52.381
0.00
0.00
0.00
3.25
2361
2784
2.735762
GCGTCCTCAAGTGATCTGGTAC
60.736
54.545
0.00
0.00
0.00
3.34
2362
2785
2.478031
CGTCCTCAAGTGATCTGGTACG
60.478
54.545
0.00
0.00
0.00
3.67
2363
2786
2.100197
TCCTCAAGTGATCTGGTACGG
58.900
52.381
0.00
0.00
0.00
4.02
2364
2787
1.825474
CCTCAAGTGATCTGGTACGGT
59.175
52.381
0.00
0.00
35.30
4.83
2365
2788
2.417379
CCTCAAGTGATCTGGTACGGTG
60.417
54.545
0.00
0.00
35.30
4.94
2366
2789
2.492088
CTCAAGTGATCTGGTACGGTGA
59.508
50.000
0.00
0.00
35.30
4.02
2367
2790
2.492088
TCAAGTGATCTGGTACGGTGAG
59.508
50.000
0.00
0.00
35.30
3.51
2368
2791
2.492088
CAAGTGATCTGGTACGGTGAGA
59.508
50.000
0.00
0.00
35.30
3.27
2369
2792
3.019799
AGTGATCTGGTACGGTGAGAT
57.980
47.619
0.00
0.00
35.30
2.75
2370
2793
2.690497
AGTGATCTGGTACGGTGAGATG
59.310
50.000
0.00
0.00
35.30
2.90
2371
2794
2.031870
TGATCTGGTACGGTGAGATGG
58.968
52.381
0.00
0.00
35.30
3.51
2372
2795
2.307768
GATCTGGTACGGTGAGATGGA
58.692
52.381
4.47
0.00
35.30
3.41
2373
2796
2.225382
TCTGGTACGGTGAGATGGAA
57.775
50.000
0.00
0.00
35.30
3.53
2374
2797
2.747177
TCTGGTACGGTGAGATGGAAT
58.253
47.619
0.00
0.00
35.30
3.01
2375
2798
2.693591
TCTGGTACGGTGAGATGGAATC
59.306
50.000
0.00
0.00
39.02
2.52
2385
2808
3.603144
GATGGAATCTCTGGCGGAG
57.397
57.895
17.47
17.47
41.17
4.63
2386
2809
0.034616
GATGGAATCTCTGGCGGAGG
59.965
60.000
22.67
5.06
41.17
4.30
2387
2810
0.692419
ATGGAATCTCTGGCGGAGGT
60.692
55.000
22.67
13.96
42.10
3.85
2388
2811
1.330655
TGGAATCTCTGGCGGAGGTC
61.331
60.000
22.67
18.60
42.10
3.85
2389
2812
1.066587
GAATCTCTGGCGGAGGTCG
59.933
63.158
22.67
0.00
42.10
4.79
2398
2821
2.657237
CGGAGGTCGCAAAGTCCT
59.343
61.111
0.00
0.00
41.11
3.85
2399
2822
1.738099
CGGAGGTCGCAAAGTCCTG
60.738
63.158
0.00
0.00
38.51
3.86
2400
2823
1.671742
GGAGGTCGCAAAGTCCTGA
59.328
57.895
0.00
0.00
38.51
3.86
2401
2824
0.250513
GGAGGTCGCAAAGTCCTGAT
59.749
55.000
0.00
0.00
38.51
2.90
2402
2825
1.363744
GAGGTCGCAAAGTCCTGATG
58.636
55.000
0.00
0.00
38.51
3.07
2403
2826
0.687354
AGGTCGCAAAGTCCTGATGT
59.313
50.000
0.00
0.00
37.01
3.06
2404
2827
0.798776
GGTCGCAAAGTCCTGATGTG
59.201
55.000
0.00
0.00
0.00
3.21
2405
2828
1.512926
GTCGCAAAGTCCTGATGTGT
58.487
50.000
0.00
0.00
0.00
3.72
2406
2829
1.461127
GTCGCAAAGTCCTGATGTGTC
59.539
52.381
0.00
0.00
0.00
3.67
2407
2830
0.439985
CGCAAAGTCCTGATGTGTCG
59.560
55.000
0.00
0.00
0.00
4.35
2408
2831
0.798776
GCAAAGTCCTGATGTGTCGG
59.201
55.000
0.00
0.00
0.00
4.79
2409
2832
1.878102
GCAAAGTCCTGATGTGTCGGT
60.878
52.381
0.00
0.00
0.00
4.69
2410
2833
1.800586
CAAAGTCCTGATGTGTCGGTG
59.199
52.381
0.00
0.00
0.00
4.94
2411
2834
0.320771
AAGTCCTGATGTGTCGGTGC
60.321
55.000
0.00
0.00
0.00
5.01
2412
2835
1.005037
GTCCTGATGTGTCGGTGCA
60.005
57.895
0.00
0.00
0.00
4.57
2413
2836
1.005037
TCCTGATGTGTCGGTGCAC
60.005
57.895
8.80
8.80
39.65
4.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
5.819379
CACCATTAAGACACACATATGAGCT
59.181
40.000
10.38
0.00
0.00
4.09
2
3
5.504665
GCACCATTAAGACACACATATGAGC
60.505
44.000
10.38
0.00
0.00
4.26
4
5
5.744171
AGCACCATTAAGACACACATATGA
58.256
37.500
10.38
0.00
0.00
2.15
5
6
5.585844
TGAGCACCATTAAGACACACATATG
59.414
40.000
0.00
0.00
0.00
1.78
6
7
5.744171
TGAGCACCATTAAGACACACATAT
58.256
37.500
0.00
0.00
0.00
1.78
7
8
5.159273
TGAGCACCATTAAGACACACATA
57.841
39.130
0.00
0.00
0.00
2.29
8
9
4.019792
TGAGCACCATTAAGACACACAT
57.980
40.909
0.00
0.00
0.00
3.21
9
10
3.483808
TGAGCACCATTAAGACACACA
57.516
42.857
0.00
0.00
0.00
3.72
10
11
5.048782
TCAAATGAGCACCATTAAGACACAC
60.049
40.000
5.03
0.00
44.28
3.82
11
12
5.048782
GTCAAATGAGCACCATTAAGACACA
60.049
40.000
19.97
0.00
44.28
3.72
12
13
5.393962
GTCAAATGAGCACCATTAAGACAC
58.606
41.667
19.97
7.20
44.28
3.67
13
14
4.458989
GGTCAAATGAGCACCATTAAGACA
59.541
41.667
22.91
0.00
44.28
3.41
14
15
4.702131
AGGTCAAATGAGCACCATTAAGAC
59.298
41.667
14.36
18.36
44.28
3.01
15
16
4.922206
AGGTCAAATGAGCACCATTAAGA
58.078
39.130
14.36
4.53
44.28
2.10
16
17
4.201851
CGAGGTCAAATGAGCACCATTAAG
60.202
45.833
14.36
2.63
44.28
1.85
103
107
5.108292
CGTTCGTCGTTTTATAAGACACACA
60.108
40.000
6.91
0.00
34.80
3.72
539
559
0.814457
AGCCAGCACGTTCACAAAAA
59.186
45.000
0.00
0.00
0.00
1.94
540
560
0.100325
CAGCCAGCACGTTCACAAAA
59.900
50.000
0.00
0.00
0.00
2.44
541
561
1.029408
ACAGCCAGCACGTTCACAAA
61.029
50.000
0.00
0.00
0.00
2.83
542
562
1.451207
ACAGCCAGCACGTTCACAA
60.451
52.632
0.00
0.00
0.00
3.33
543
563
2.179547
CACAGCCAGCACGTTCACA
61.180
57.895
0.00
0.00
0.00
3.58
544
564
0.878523
TACACAGCCAGCACGTTCAC
60.879
55.000
0.00
0.00
0.00
3.18
545
565
0.034756
ATACACAGCCAGCACGTTCA
59.965
50.000
0.00
0.00
0.00
3.18
546
566
1.156736
AATACACAGCCAGCACGTTC
58.843
50.000
0.00
0.00
0.00
3.95
547
567
1.604604
AAATACACAGCCAGCACGTT
58.395
45.000
0.00
0.00
0.00
3.99
548
568
1.604604
AAAATACACAGCCAGCACGT
58.395
45.000
0.00
0.00
0.00
4.49
549
569
2.318578
CAAAAATACACAGCCAGCACG
58.681
47.619
0.00
0.00
0.00
5.34
550
570
2.061028
GCAAAAATACACAGCCAGCAC
58.939
47.619
0.00
0.00
0.00
4.40
551
571
1.685517
TGCAAAAATACACAGCCAGCA
59.314
42.857
0.00
0.00
0.00
4.41
552
572
2.437200
TGCAAAAATACACAGCCAGC
57.563
45.000
0.00
0.00
0.00
4.85
553
573
4.445452
AGATGCAAAAATACACAGCCAG
57.555
40.909
0.00
0.00
0.00
4.85
554
574
4.870123
AAGATGCAAAAATACACAGCCA
57.130
36.364
0.00
0.00
0.00
4.75
555
575
7.832503
ATAAAAGATGCAAAAATACACAGCC
57.167
32.000
0.00
0.00
0.00
4.85
574
682
9.370126
CAACACGTTCACAAAAACAAAATAAAA
57.630
25.926
0.00
0.00
0.00
1.52
578
686
5.615764
GCCAACACGTTCACAAAAACAAAAT
60.616
36.000
0.00
0.00
0.00
1.82
579
687
4.318831
GCCAACACGTTCACAAAAACAAAA
60.319
37.500
0.00
0.00
0.00
2.44
581
689
2.731976
GCCAACACGTTCACAAAAACAA
59.268
40.909
0.00
0.00
0.00
2.83
770
1046
5.129634
GTGGGAAATGGTGGTTTCAAAAAT
58.870
37.500
2.32
0.00
39.33
1.82
776
1052
0.038618
GCGTGGGAAATGGTGGTTTC
60.039
55.000
0.00
0.00
37.37
2.78
829
1105
2.095415
GGTCAAATGTGAAGTAACCCGC
60.095
50.000
0.00
0.00
34.87
6.13
920
1203
3.116434
AGAGAGGATGGGAGATGGATGAA
60.116
47.826
0.00
0.00
0.00
2.57
925
1208
0.686224
GCAGAGAGGATGGGAGATGG
59.314
60.000
0.00
0.00
0.00
3.51
926
1209
0.686224
GGCAGAGAGGATGGGAGATG
59.314
60.000
0.00
0.00
0.00
2.90
927
1210
0.267054
TGGCAGAGAGGATGGGAGAT
59.733
55.000
0.00
0.00
0.00
2.75
928
1211
0.267054
ATGGCAGAGAGGATGGGAGA
59.733
55.000
0.00
0.00
0.00
3.71
929
1212
0.686224
GATGGCAGAGAGGATGGGAG
59.314
60.000
0.00
0.00
0.00
4.30
930
1213
0.267054
AGATGGCAGAGAGGATGGGA
59.733
55.000
0.00
0.00
0.00
4.37
931
1214
0.397187
CAGATGGCAGAGAGGATGGG
59.603
60.000
0.00
0.00
0.00
4.00
932
1215
0.250381
GCAGATGGCAGAGAGGATGG
60.250
60.000
0.00
0.00
43.97
3.51
933
1216
3.309052
GCAGATGGCAGAGAGGATG
57.691
57.895
0.00
0.00
43.97
3.51
943
1226
1.379576
AGCAAGAAGGGCAGATGGC
60.380
57.895
0.00
0.00
43.74
4.40
1111
1454
1.072505
TGAAGTTCCTTGCGGTCCC
59.927
57.895
0.00
0.00
0.00
4.46
1190
1533
1.186200
TTGGATGACCTCCTCGACAG
58.814
55.000
0.00
0.00
45.21
3.51
1213
1556
2.529744
GGAGAGCAACCACCACCCT
61.530
63.158
0.00
0.00
0.00
4.34
1236
1579
2.869801
GTCGAATGTGTTGGTGAAGTGA
59.130
45.455
0.00
0.00
0.00
3.41
1359
1702
0.745845
GAAGAGTGTGCATGCGGGAT
60.746
55.000
14.09
0.00
0.00
3.85
1422
1769
2.674220
CCACCTTGCTCCTCCTCCC
61.674
68.421
0.00
0.00
0.00
4.30
1434
1781
4.394712
CGCCGCCTTCTCCACCTT
62.395
66.667
0.00
0.00
0.00
3.50
1543
1902
7.410120
AATAGAACTTGATAAAAGGGCCAAG
57.590
36.000
6.18
0.43
41.12
3.61
1718
2084
5.067283
GCTTGTGTAAGAAAAGAAGGGTTCA
59.933
40.000
0.00
0.00
35.92
3.18
1911
2327
2.981560
GCCACAATGCACTGACCGG
61.982
63.158
0.26
0.00
0.00
5.28
1996
2412
1.362768
TGACAGAAGCTTGCTATGCG
58.637
50.000
2.10
0.00
35.28
4.73
2005
2421
2.437359
GCCGCCATGACAGAAGCT
60.437
61.111
0.00
0.00
0.00
3.74
2030
2446
0.519519
CGTCCCTTGCATTAAACGCA
59.480
50.000
0.00
0.00
37.68
5.24
2097
2513
2.997315
CTCTGACGAGTGGGGCCA
60.997
66.667
4.39
0.00
32.47
5.36
2125
2541
3.195698
GCCGTCGGGTCAATGCTC
61.196
66.667
14.38
0.00
34.97
4.26
2175
2591
0.178964
CTTTTCCCCACTCCCTTGCA
60.179
55.000
0.00
0.00
0.00
4.08
2194
2617
3.545633
CACGCTCTTAACTTTTGCTCAC
58.454
45.455
0.00
0.00
0.00
3.51
2276
2699
9.343539
GCCTACTTTCCTGAACATATTCTAAAT
57.656
33.333
0.00
0.00
35.69
1.40
2277
2700
7.773690
GGCCTACTTTCCTGAACATATTCTAAA
59.226
37.037
0.00
0.00
35.69
1.85
2278
2701
7.092623
TGGCCTACTTTCCTGAACATATTCTAA
60.093
37.037
3.32
0.00
35.69
2.10
2279
2702
6.385759
TGGCCTACTTTCCTGAACATATTCTA
59.614
38.462
3.32
0.00
35.69
2.10
2280
2703
5.191722
TGGCCTACTTTCCTGAACATATTCT
59.808
40.000
3.32
0.00
35.69
2.40
2281
2704
5.437060
TGGCCTACTTTCCTGAACATATTC
58.563
41.667
3.32
0.00
35.18
1.75
2282
2705
5.450818
TGGCCTACTTTCCTGAACATATT
57.549
39.130
3.32
0.00
0.00
1.28
2283
2706
5.380043
CATGGCCTACTTTCCTGAACATAT
58.620
41.667
3.32
0.00
0.00
1.78
2284
2707
4.780815
CATGGCCTACTTTCCTGAACATA
58.219
43.478
3.32
0.00
0.00
2.29
2285
2708
3.624777
CATGGCCTACTTTCCTGAACAT
58.375
45.455
3.32
0.00
0.00
2.71
2286
2709
2.879756
GCATGGCCTACTTTCCTGAACA
60.880
50.000
3.32
0.00
0.00
3.18
2287
2710
1.745653
GCATGGCCTACTTTCCTGAAC
59.254
52.381
3.32
0.00
0.00
3.18
2288
2711
1.340991
GGCATGGCCTACTTTCCTGAA
60.341
52.381
8.35
0.00
46.69
3.02
2289
2712
0.255890
GGCATGGCCTACTTTCCTGA
59.744
55.000
8.35
0.00
46.69
3.86
2290
2713
2.799176
GGCATGGCCTACTTTCCTG
58.201
57.895
8.35
0.00
46.69
3.86
2301
2724
0.385390
CCTAAATCGGTTGGCATGGC
59.615
55.000
13.29
13.29
0.00
4.40
2302
2725
1.032014
CCCTAAATCGGTTGGCATGG
58.968
55.000
0.00
0.00
0.00
3.66
2303
2726
1.405105
CACCCTAAATCGGTTGGCATG
59.595
52.381
0.00
0.00
0.00
4.06
2304
2727
1.283613
TCACCCTAAATCGGTTGGCAT
59.716
47.619
0.00
0.00
0.00
4.40
2305
2728
0.693622
TCACCCTAAATCGGTTGGCA
59.306
50.000
0.00
0.00
0.00
4.92
2306
2729
1.065709
TCTCACCCTAAATCGGTTGGC
60.066
52.381
0.00
0.00
0.00
4.52
2307
2730
3.560636
ATCTCACCCTAAATCGGTTGG
57.439
47.619
0.00
0.00
0.00
3.77
2308
2731
4.513442
TCAATCTCACCCTAAATCGGTTG
58.487
43.478
0.00
0.00
0.00
3.77
2309
2732
4.837093
TCAATCTCACCCTAAATCGGTT
57.163
40.909
0.00
0.00
0.00
4.44
2310
2733
4.019681
TGTTCAATCTCACCCTAAATCGGT
60.020
41.667
0.00
0.00
0.00
4.69
2311
2734
4.513442
TGTTCAATCTCACCCTAAATCGG
58.487
43.478
0.00
0.00
0.00
4.18
2312
2735
6.202954
GGTATGTTCAATCTCACCCTAAATCG
59.797
42.308
0.00
0.00
0.00
3.34
2313
2736
6.202954
CGGTATGTTCAATCTCACCCTAAATC
59.797
42.308
0.00
0.00
0.00
2.17
2314
2737
6.055588
CGGTATGTTCAATCTCACCCTAAAT
58.944
40.000
0.00
0.00
0.00
1.40
2315
2738
5.424757
CGGTATGTTCAATCTCACCCTAAA
58.575
41.667
0.00
0.00
0.00
1.85
2316
2739
4.682320
GCGGTATGTTCAATCTCACCCTAA
60.682
45.833
0.00
0.00
0.00
2.69
2317
2740
3.181469
GCGGTATGTTCAATCTCACCCTA
60.181
47.826
0.00
0.00
0.00
3.53
2318
2741
2.420129
GCGGTATGTTCAATCTCACCCT
60.420
50.000
0.00
0.00
0.00
4.34
2319
2742
1.940613
GCGGTATGTTCAATCTCACCC
59.059
52.381
0.00
0.00
0.00
4.61
2320
2743
1.593006
CGCGGTATGTTCAATCTCACC
59.407
52.381
0.00
0.00
0.00
4.02
2321
2744
1.004927
GCGCGGTATGTTCAATCTCAC
60.005
52.381
8.83
0.00
0.00
3.51
2322
2745
1.286501
GCGCGGTATGTTCAATCTCA
58.713
50.000
8.83
0.00
0.00
3.27
2323
2746
0.229753
CGCGCGGTATGTTCAATCTC
59.770
55.000
24.84
0.00
0.00
2.75
2324
2747
0.459585
ACGCGCGGTATGTTCAATCT
60.460
50.000
35.22
4.55
0.00
2.40
2325
2748
0.043310
GACGCGCGGTATGTTCAATC
60.043
55.000
35.22
14.42
0.00
2.67
2326
2749
1.426041
GGACGCGCGGTATGTTCAAT
61.426
55.000
35.22
8.59
0.00
2.57
2327
2750
2.095847
GGACGCGCGGTATGTTCAA
61.096
57.895
35.22
0.00
0.00
2.69
2328
2751
2.507547
GGACGCGCGGTATGTTCA
60.508
61.111
35.22
0.00
0.00
3.18
2329
2752
2.202703
AGGACGCGCGGTATGTTC
60.203
61.111
35.22
20.63
0.00
3.18
2330
2753
2.202703
GAGGACGCGCGGTATGTT
60.203
61.111
35.22
12.16
0.00
2.71
2331
2754
2.884087
CTTGAGGACGCGCGGTATGT
62.884
60.000
35.22
13.06
0.00
2.29
2332
2755
2.202690
TTGAGGACGCGCGGTATG
60.203
61.111
35.22
6.16
0.00
2.39
2333
2756
2.104331
CTTGAGGACGCGCGGTAT
59.896
61.111
35.22
18.96
0.00
2.73
2334
2757
3.367743
ACTTGAGGACGCGCGGTA
61.368
61.111
35.22
12.16
0.00
4.02
2336
2759
3.989698
ATCACTTGAGGACGCGCGG
62.990
63.158
35.22
16.69
0.00
6.46
2337
2760
2.507102
ATCACTTGAGGACGCGCG
60.507
61.111
30.96
30.96
0.00
6.86
2338
2761
1.153745
AGATCACTTGAGGACGCGC
60.154
57.895
5.73
0.00
0.00
6.86
2339
2762
0.803768
CCAGATCACTTGAGGACGCG
60.804
60.000
3.53
3.53
0.00
6.01
2340
2763
0.247736
ACCAGATCACTTGAGGACGC
59.752
55.000
0.00
0.00
0.00
5.19
2341
2764
2.478031
CGTACCAGATCACTTGAGGACG
60.478
54.545
0.00
0.00
0.00
4.79
2342
2765
2.159226
CCGTACCAGATCACTTGAGGAC
60.159
54.545
0.00
0.00
0.00
3.85
2343
2766
2.100197
CCGTACCAGATCACTTGAGGA
58.900
52.381
0.00
0.00
0.00
3.71
2344
2767
1.825474
ACCGTACCAGATCACTTGAGG
59.175
52.381
0.00
0.00
0.00
3.86
2345
2768
2.492088
TCACCGTACCAGATCACTTGAG
59.508
50.000
0.00
0.00
0.00
3.02
2346
2769
2.492088
CTCACCGTACCAGATCACTTGA
59.508
50.000
0.00
0.00
0.00
3.02
2347
2770
2.492088
TCTCACCGTACCAGATCACTTG
59.508
50.000
0.00
0.00
0.00
3.16
2348
2771
2.803956
TCTCACCGTACCAGATCACTT
58.196
47.619
0.00
0.00
0.00
3.16
2349
2772
2.509166
TCTCACCGTACCAGATCACT
57.491
50.000
0.00
0.00
0.00
3.41
2350
2773
2.223829
CCATCTCACCGTACCAGATCAC
60.224
54.545
0.00
0.00
0.00
3.06
2351
2774
2.031870
CCATCTCACCGTACCAGATCA
58.968
52.381
0.00
0.00
0.00
2.92
2352
2775
2.307768
TCCATCTCACCGTACCAGATC
58.692
52.381
0.00
0.00
0.00
2.75
2353
2776
2.454336
TCCATCTCACCGTACCAGAT
57.546
50.000
0.00
0.00
0.00
2.90
2354
2777
2.225382
TTCCATCTCACCGTACCAGA
57.775
50.000
0.00
0.00
0.00
3.86
2355
2778
2.695666
AGATTCCATCTCACCGTACCAG
59.304
50.000
0.00
0.00
33.42
4.00
2356
2779
2.747177
AGATTCCATCTCACCGTACCA
58.253
47.619
0.00
0.00
33.42
3.25
2366
2789
1.047002
CTCCGCCAGAGATTCCATCT
58.953
55.000
0.00
0.00
46.50
2.90
2367
2790
0.034616
CCTCCGCCAGAGATTCCATC
59.965
60.000
0.00
0.00
46.50
3.51
2368
2791
0.692419
ACCTCCGCCAGAGATTCCAT
60.692
55.000
0.00
0.00
46.50
3.41
2369
2792
1.306141
ACCTCCGCCAGAGATTCCA
60.306
57.895
0.00
0.00
46.50
3.53
2370
2793
1.443828
GACCTCCGCCAGAGATTCC
59.556
63.158
0.00
0.00
46.50
3.01
2371
2794
1.066587
CGACCTCCGCCAGAGATTC
59.933
63.158
0.00
0.00
46.50
2.52
2372
2795
3.211288
CGACCTCCGCCAGAGATT
58.789
61.111
0.00
0.00
46.50
2.40
2381
2804
1.738099
CAGGACTTTGCGACCTCCG
60.738
63.158
0.00
0.00
35.54
4.63
2382
2805
0.250513
ATCAGGACTTTGCGACCTCC
59.749
55.000
0.00
0.00
35.54
4.30
2383
2806
1.338200
ACATCAGGACTTTGCGACCTC
60.338
52.381
0.00
0.00
35.54
3.85
2384
2807
0.687354
ACATCAGGACTTTGCGACCT
59.313
50.000
0.00
0.00
38.36
3.85
2385
2808
0.798776
CACATCAGGACTTTGCGACC
59.201
55.000
0.00
0.00
0.00
4.79
2386
2809
1.461127
GACACATCAGGACTTTGCGAC
59.539
52.381
0.00
0.00
0.00
5.19
2387
2810
1.795768
GACACATCAGGACTTTGCGA
58.204
50.000
0.00
0.00
0.00
5.10
2388
2811
0.439985
CGACACATCAGGACTTTGCG
59.560
55.000
0.00
0.00
0.00
4.85
2389
2812
0.798776
CCGACACATCAGGACTTTGC
59.201
55.000
0.00
0.00
0.00
3.68
2390
2813
1.800586
CACCGACACATCAGGACTTTG
59.199
52.381
0.00
0.00
0.00
2.77
2391
2814
1.878102
GCACCGACACATCAGGACTTT
60.878
52.381
0.00
0.00
0.00
2.66
2392
2815
0.320771
GCACCGACACATCAGGACTT
60.321
55.000
0.00
0.00
0.00
3.01
2393
2816
1.293498
GCACCGACACATCAGGACT
59.707
57.895
0.00
0.00
0.00
3.85
2394
2817
1.005037
TGCACCGACACATCAGGAC
60.005
57.895
0.00
0.00
0.00
3.85
2395
2818
1.005037
GTGCACCGACACATCAGGA
60.005
57.895
5.22
0.00
40.40
3.86
2396
2819
3.566261
GTGCACCGACACATCAGG
58.434
61.111
5.22
0.00
40.40
3.86
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.