Multiple sequence alignment - TraesCS2D01G401700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G401700 chr2D 100.000 5430 0 0 1 5430 516647908 516653337 0.000000e+00 10028.0
1 TraesCS2D01G401700 chr2B 95.065 2756 81 24 2719 5430 608365024 608367768 0.000000e+00 4285.0
2 TraesCS2D01G401700 chr2B 92.977 2093 91 24 363 2409 608362415 608364497 0.000000e+00 3000.0
3 TraesCS2D01G401700 chr2B 83.311 755 52 25 1991 2718 608364275 608364982 3.570000e-176 628.0
4 TraesCS2D01G401700 chr2B 95.238 126 6 0 247 372 608360547 608360672 3.320000e-47 200.0
5 TraesCS2D01G401700 chr2A 96.529 2103 48 7 3043 5141 660503973 660506054 0.000000e+00 3456.0
6 TraesCS2D01G401700 chr2A 92.748 1903 70 23 857 2718 660501463 660503338 0.000000e+00 2687.0
7 TraesCS2D01G401700 chr2A 88.506 435 23 13 394 806 660500736 660501165 8.120000e-138 501.0
8 TraesCS2D01G401700 chr2A 95.192 208 9 1 2798 3004 660503778 660503985 1.460000e-85 327.0
9 TraesCS2D01G401700 chr2A 93.785 177 9 2 2798 2972 660503555 660503731 1.160000e-66 265.0
10 TraesCS2D01G401700 chr2A 88.514 148 16 1 3007 3153 660503807 660503954 1.550000e-40 178.0
11 TraesCS2D01G401700 chr2A 88.652 141 13 3 3007 3144 660503584 660503724 9.350000e-38 169.0
12 TraesCS2D01G401700 chr2A 97.101 69 2 0 5362 5430 660506054 660506122 3.440000e-22 117.0
13 TraesCS2D01G401700 chr1B 81.200 500 72 10 3151 3638 44936456 44935967 3.070000e-102 383.0
14 TraesCS2D01G401700 chr1B 89.344 122 11 2 3007 3127 650268135 650268255 9.420000e-33 152.0
15 TraesCS2D01G401700 chr1B 79.130 230 27 6 3050 3262 48489704 48489479 7.330000e-29 139.0
16 TraesCS2D01G401700 chr1B 95.349 43 2 0 2222 2264 44936659 44936617 9.760000e-08 69.4
17 TraesCS2D01G401700 chr5A 80.328 427 60 15 1810 2220 655036664 655037082 8.840000e-78 302.0
18 TraesCS2D01G401700 chr5A 85.393 89 7 5 2408 2495 283110389 283110472 2.690000e-13 87.9
19 TraesCS2D01G401700 chr6A 95.082 183 9 0 1 183 33528295 33528477 6.880000e-74 289.0
20 TraesCS2D01G401700 chr6A 81.030 369 48 16 3284 3638 603942850 603942490 1.930000e-69 274.0
21 TraesCS2D01G401700 chr6A 81.955 266 26 10 3007 3272 603944641 603944398 7.130000e-49 206.0
22 TraesCS2D01G401700 chr6A 81.008 258 28 9 2731 2985 603944740 603944501 9.290000e-43 185.0
23 TraesCS2D01G401700 chr7A 90.811 185 15 2 1 183 26813049 26812865 4.200000e-61 246.0
24 TraesCS2D01G401700 chr7A 90.217 184 17 1 1 183 579088450 579088633 7.030000e-59 239.0
25 TraesCS2D01G401700 chr5B 86.441 177 20 3 7 183 589460532 589460360 2.000000e-44 191.0
26 TraesCS2D01G401700 chr6B 94.828 58 3 0 2445 2502 664506962 664506905 2.080000e-14 91.6
27 TraesCS2D01G401700 chr7B 96.078 51 2 0 2445 2495 1834808 1834758 3.490000e-12 84.2
28 TraesCS2D01G401700 chr4B 89.552 67 6 1 2445 2510 621511637 621511703 3.490000e-12 84.2
29 TraesCS2D01G401700 chr3D 94.231 52 3 0 2445 2496 307105787 307105838 4.510000e-11 80.5
30 TraesCS2D01G401700 chr3D 94.231 52 3 0 2445 2496 473640875 473640824 4.510000e-11 80.5
31 TraesCS2D01G401700 chr3A 92.857 56 3 1 2445 2500 510002296 510002350 4.510000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G401700 chr2D 516647908 516653337 5429 False 10028.000000 10028 100.000000 1 5430 1 chr2D.!!$F1 5429
1 TraesCS2D01G401700 chr2B 608360547 608367768 7221 False 2028.250000 4285 91.647750 247 5430 4 chr2B.!!$F1 5183
2 TraesCS2D01G401700 chr2A 660500736 660506122 5386 False 962.500000 3456 92.628375 394 5430 8 chr2A.!!$F1 5036
3 TraesCS2D01G401700 chr1B 44935967 44936659 692 True 226.200000 383 88.274500 2222 3638 2 chr1B.!!$R2 1416
4 TraesCS2D01G401700 chr6A 603942490 603944740 2250 True 221.666667 274 81.331000 2731 3638 3 chr6A.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.029567 CGTCCATCGTCTCTAGCACC 59.970 60.000 0.0 0.0 34.52 5.01 F
920 2941 0.034960 CGGTCAGAGAGAGTGAGGGA 60.035 60.000 0.0 0.0 0.00 4.20 F
926 2947 0.106217 GAGAGAGTGAGGGAGGGGAG 60.106 65.000 0.0 0.0 0.00 4.30 F
967 2991 0.108281 GTACCCGCTCCTCCTGTTTC 60.108 60.000 0.0 0.0 0.00 2.78 F
2420 4751 0.113776 TTGTGGTACTCCCTCGGTCT 59.886 55.000 0.0 0.0 0.00 3.85 F
4148 8406 1.421268 TGGCAGTGGACAAAGATCTGT 59.579 47.619 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 4202 0.114168 TGTTTGCATGGGCCTACCTT 59.886 50.000 4.53 0.0 41.11 3.50 R
2433 4764 0.033366 TCTAGCACTGCGTTTGAGCA 59.967 50.000 0.00 0.0 45.96 4.26 R
2607 4938 2.159142 CCTTACTGTCATACCGGTCACC 60.159 54.545 12.40 0.0 0.00 4.02 R
2757 5129 6.708949 TGAATTCAGTGGTTCAAAGGTAGTAC 59.291 38.462 3.38 0.0 31.85 2.73 R
4339 8597 0.320421 TGTGGACGCCTGTAAGCTTC 60.320 55.000 0.00 0.0 0.00 3.86 R
5298 9580 0.458669 TCGTTAATCTCCAGCCCGTC 59.541 55.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.565531 GTCGATTGGGTTCGTCGT 57.434 55.556 0.00 0.00 40.03 4.34
18 19 2.818350 GTCGATTGGGTTCGTCGTT 58.182 52.632 0.00 0.00 40.03 3.85
19 20 0.712222 GTCGATTGGGTTCGTCGTTC 59.288 55.000 0.00 0.00 40.03 3.95
20 21 0.599558 TCGATTGGGTTCGTCGTTCT 59.400 50.000 0.00 0.00 40.03 3.01
21 22 0.713883 CGATTGGGTTCGTCGTTCTG 59.286 55.000 0.00 0.00 34.46 3.02
22 23 0.442699 GATTGGGTTCGTCGTTCTGC 59.557 55.000 0.00 0.00 0.00 4.26
23 24 0.953960 ATTGGGTTCGTCGTTCTGCC 60.954 55.000 0.00 0.00 0.00 4.85
24 25 2.029964 GGGTTCGTCGTTCTGCCA 59.970 61.111 0.00 0.00 0.00 4.92
25 26 1.595929 GGGTTCGTCGTTCTGCCAA 60.596 57.895 0.00 0.00 0.00 4.52
26 27 1.568025 GGTTCGTCGTTCTGCCAAC 59.432 57.895 0.00 0.00 0.00 3.77
27 28 1.200839 GTTCGTCGTTCTGCCAACG 59.799 57.895 10.92 10.92 44.29 4.10
28 29 1.227031 TTCGTCGTTCTGCCAACGT 60.227 52.632 15.37 0.00 43.47 3.99
29 30 0.806884 TTCGTCGTTCTGCCAACGTT 60.807 50.000 15.37 0.00 43.47 3.99
30 31 1.083657 CGTCGTTCTGCCAACGTTG 60.084 57.895 21.47 21.47 43.47 4.10
31 32 1.368850 GTCGTTCTGCCAACGTTGC 60.369 57.895 22.93 17.56 43.47 4.17
32 33 1.522806 TCGTTCTGCCAACGTTGCT 60.523 52.632 22.93 0.00 43.47 3.91
33 34 1.369209 CGTTCTGCCAACGTTGCTG 60.369 57.895 22.93 19.43 38.69 4.41
34 35 1.771073 CGTTCTGCCAACGTTGCTGA 61.771 55.000 22.93 21.11 38.69 4.26
35 36 0.593128 GTTCTGCCAACGTTGCTGAT 59.407 50.000 22.93 0.00 36.71 2.90
36 37 0.874390 TTCTGCCAACGTTGCTGATC 59.126 50.000 22.93 8.87 36.71 2.92
37 38 0.250252 TCTGCCAACGTTGCTGATCA 60.250 50.000 22.93 12.56 32.64 2.92
38 39 0.806868 CTGCCAACGTTGCTGATCAT 59.193 50.000 22.93 0.00 0.00 2.45
39 40 2.009051 CTGCCAACGTTGCTGATCATA 58.991 47.619 22.93 1.55 0.00 2.15
40 41 2.419673 CTGCCAACGTTGCTGATCATAA 59.580 45.455 22.93 0.00 0.00 1.90
41 42 2.419673 TGCCAACGTTGCTGATCATAAG 59.580 45.455 22.93 6.16 0.00 1.73
42 43 2.420022 GCCAACGTTGCTGATCATAAGT 59.580 45.455 22.93 0.00 0.00 2.24
43 44 3.119849 GCCAACGTTGCTGATCATAAGTT 60.120 43.478 22.93 0.00 0.00 2.66
44 45 4.615912 GCCAACGTTGCTGATCATAAGTTT 60.616 41.667 22.93 0.00 0.00 2.66
45 46 4.853196 CCAACGTTGCTGATCATAAGTTTG 59.147 41.667 22.93 0.00 0.00 2.93
46 47 4.083581 ACGTTGCTGATCATAAGTTTGC 57.916 40.909 0.00 0.00 0.00 3.68
47 48 3.753272 ACGTTGCTGATCATAAGTTTGCT 59.247 39.130 0.00 0.00 0.00 3.91
48 49 4.935205 ACGTTGCTGATCATAAGTTTGCTA 59.065 37.500 0.00 0.00 0.00 3.49
49 50 5.411361 ACGTTGCTGATCATAAGTTTGCTAA 59.589 36.000 0.00 0.00 0.00 3.09
50 51 6.072728 ACGTTGCTGATCATAAGTTTGCTAAA 60.073 34.615 0.00 0.00 0.00 1.85
51 52 6.467047 CGTTGCTGATCATAAGTTTGCTAAAG 59.533 38.462 0.00 0.00 0.00 1.85
52 53 7.308435 GTTGCTGATCATAAGTTTGCTAAAGT 58.692 34.615 0.00 0.00 0.00 2.66
53 54 8.450964 GTTGCTGATCATAAGTTTGCTAAAGTA 58.549 33.333 0.00 0.00 0.00 2.24
54 55 8.201554 TGCTGATCATAAGTTTGCTAAAGTAG 57.798 34.615 0.00 0.00 0.00 2.57
55 56 7.280876 TGCTGATCATAAGTTTGCTAAAGTAGG 59.719 37.037 0.00 0.00 0.00 3.18
56 57 7.281100 GCTGATCATAAGTTTGCTAAAGTAGGT 59.719 37.037 0.00 0.00 0.00 3.08
57 58 9.167311 CTGATCATAAGTTTGCTAAAGTAGGTT 57.833 33.333 0.00 0.00 0.00 3.50
58 59 9.515226 TGATCATAAGTTTGCTAAAGTAGGTTT 57.485 29.630 0.00 0.00 0.00 3.27
59 60 9.774742 GATCATAAGTTTGCTAAAGTAGGTTTG 57.225 33.333 0.00 0.00 0.00 2.93
60 61 8.106247 TCATAAGTTTGCTAAAGTAGGTTTGG 57.894 34.615 0.00 0.00 0.00 3.28
61 62 5.784578 AAGTTTGCTAAAGTAGGTTTGGG 57.215 39.130 0.00 0.00 0.00 4.12
62 63 4.800023 AGTTTGCTAAAGTAGGTTTGGGT 58.200 39.130 0.00 0.00 0.00 4.51
63 64 4.583073 AGTTTGCTAAAGTAGGTTTGGGTG 59.417 41.667 0.00 0.00 0.00 4.61
64 65 4.440826 TTGCTAAAGTAGGTTTGGGTGA 57.559 40.909 0.00 0.00 0.00 4.02
65 66 4.650972 TGCTAAAGTAGGTTTGGGTGAT 57.349 40.909 0.00 0.00 0.00 3.06
66 67 4.331968 TGCTAAAGTAGGTTTGGGTGATG 58.668 43.478 0.00 0.00 0.00 3.07
67 68 4.042311 TGCTAAAGTAGGTTTGGGTGATGA 59.958 41.667 0.00 0.00 0.00 2.92
68 69 4.636206 GCTAAAGTAGGTTTGGGTGATGAG 59.364 45.833 0.00 0.00 0.00 2.90
69 70 4.724279 AAAGTAGGTTTGGGTGATGAGT 57.276 40.909 0.00 0.00 0.00 3.41
70 71 4.724279 AAGTAGGTTTGGGTGATGAGTT 57.276 40.909 0.00 0.00 0.00 3.01
71 72 5.836024 AAGTAGGTTTGGGTGATGAGTTA 57.164 39.130 0.00 0.00 0.00 2.24
72 73 6.388619 AAGTAGGTTTGGGTGATGAGTTAT 57.611 37.500 0.00 0.00 0.00 1.89
73 74 5.745227 AGTAGGTTTGGGTGATGAGTTATG 58.255 41.667 0.00 0.00 0.00 1.90
74 75 4.657814 AGGTTTGGGTGATGAGTTATGT 57.342 40.909 0.00 0.00 0.00 2.29
75 76 5.772393 AGGTTTGGGTGATGAGTTATGTA 57.228 39.130 0.00 0.00 0.00 2.29
76 77 6.134535 AGGTTTGGGTGATGAGTTATGTAA 57.865 37.500 0.00 0.00 0.00 2.41
77 78 6.180472 AGGTTTGGGTGATGAGTTATGTAAG 58.820 40.000 0.00 0.00 0.00 2.34
78 79 5.357032 GGTTTGGGTGATGAGTTATGTAAGG 59.643 44.000 0.00 0.00 0.00 2.69
79 80 5.772393 TTGGGTGATGAGTTATGTAAGGT 57.228 39.130 0.00 0.00 0.00 3.50
80 81 5.097742 TGGGTGATGAGTTATGTAAGGTG 57.902 43.478 0.00 0.00 0.00 4.00
81 82 4.534500 TGGGTGATGAGTTATGTAAGGTGT 59.466 41.667 0.00 0.00 0.00 4.16
82 83 4.876107 GGGTGATGAGTTATGTAAGGTGTG 59.124 45.833 0.00 0.00 0.00 3.82
83 84 4.876107 GGTGATGAGTTATGTAAGGTGTGG 59.124 45.833 0.00 0.00 0.00 4.17
84 85 4.332819 GTGATGAGTTATGTAAGGTGTGGC 59.667 45.833 0.00 0.00 0.00 5.01
85 86 4.225042 TGATGAGTTATGTAAGGTGTGGCT 59.775 41.667 0.00 0.00 0.00 4.75
86 87 3.937814 TGAGTTATGTAAGGTGTGGCTG 58.062 45.455 0.00 0.00 0.00 4.85
87 88 3.270877 GAGTTATGTAAGGTGTGGCTGG 58.729 50.000 0.00 0.00 0.00 4.85
88 89 2.026262 AGTTATGTAAGGTGTGGCTGGG 60.026 50.000 0.00 0.00 0.00 4.45
89 90 0.916086 TATGTAAGGTGTGGCTGGGG 59.084 55.000 0.00 0.00 0.00 4.96
90 91 1.140134 ATGTAAGGTGTGGCTGGGGT 61.140 55.000 0.00 0.00 0.00 4.95
91 92 1.002502 GTAAGGTGTGGCTGGGGTC 60.003 63.158 0.00 0.00 0.00 4.46
92 93 1.151899 TAAGGTGTGGCTGGGGTCT 60.152 57.895 0.00 0.00 0.00 3.85
93 94 1.198759 TAAGGTGTGGCTGGGGTCTC 61.199 60.000 0.00 0.00 0.00 3.36
94 95 4.035102 GGTGTGGCTGGGGTCTCC 62.035 72.222 0.00 0.00 0.00 3.71
106 107 2.464582 GGTCTCCCCCTGACTTTGT 58.535 57.895 0.00 0.00 35.04 2.83
107 108 0.325272 GGTCTCCCCCTGACTTTGTC 59.675 60.000 0.00 0.00 35.04 3.18
108 109 0.325272 GTCTCCCCCTGACTTTGTCC 59.675 60.000 0.00 0.00 0.00 4.02
109 110 0.193574 TCTCCCCCTGACTTTGTCCT 59.806 55.000 0.00 0.00 0.00 3.85
110 111 1.068121 CTCCCCCTGACTTTGTCCTT 58.932 55.000 0.00 0.00 0.00 3.36
111 112 1.425448 CTCCCCCTGACTTTGTCCTTT 59.575 52.381 0.00 0.00 0.00 3.11
112 113 1.423921 TCCCCCTGACTTTGTCCTTTC 59.576 52.381 0.00 0.00 0.00 2.62
113 114 1.425448 CCCCCTGACTTTGTCCTTTCT 59.575 52.381 0.00 0.00 0.00 2.52
114 115 2.508526 CCCCTGACTTTGTCCTTTCTG 58.491 52.381 0.00 0.00 0.00 3.02
115 116 2.158608 CCCCTGACTTTGTCCTTTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
116 117 3.072476 CCCCTGACTTTGTCCTTTCTGTA 59.928 47.826 0.00 0.00 0.00 2.74
117 118 4.445735 CCCCTGACTTTGTCCTTTCTGTAA 60.446 45.833 0.00 0.00 0.00 2.41
118 119 5.316987 CCCTGACTTTGTCCTTTCTGTAAT 58.683 41.667 0.00 0.00 0.00 1.89
119 120 5.412904 CCCTGACTTTGTCCTTTCTGTAATC 59.587 44.000 0.00 0.00 0.00 1.75
120 121 5.120830 CCTGACTTTGTCCTTTCTGTAATCG 59.879 44.000 0.00 0.00 0.00 3.34
121 122 4.451096 TGACTTTGTCCTTTCTGTAATCGC 59.549 41.667 0.00 0.00 0.00 4.58
122 123 4.642429 ACTTTGTCCTTTCTGTAATCGCT 58.358 39.130 0.00 0.00 0.00 4.93
123 124 4.452455 ACTTTGTCCTTTCTGTAATCGCTG 59.548 41.667 0.00 0.00 0.00 5.18
124 125 3.953712 TGTCCTTTCTGTAATCGCTGA 57.046 42.857 0.00 0.00 0.00 4.26
125 126 3.585862 TGTCCTTTCTGTAATCGCTGAC 58.414 45.455 0.00 0.00 0.00 3.51
126 127 2.599082 GTCCTTTCTGTAATCGCTGACG 59.401 50.000 0.00 0.00 42.01 4.35
136 137 3.122150 TCGCTGACGACATTCCAAG 57.878 52.632 0.00 0.00 45.12 3.61
137 138 1.014044 TCGCTGACGACATTCCAAGC 61.014 55.000 0.00 0.00 45.12 4.01
138 139 1.016130 CGCTGACGACATTCCAAGCT 61.016 55.000 0.00 0.00 43.93 3.74
139 140 1.735700 CGCTGACGACATTCCAAGCTA 60.736 52.381 0.00 0.00 43.93 3.32
140 141 2.555199 GCTGACGACATTCCAAGCTAT 58.445 47.619 0.00 0.00 0.00 2.97
141 142 2.286294 GCTGACGACATTCCAAGCTATG 59.714 50.000 0.00 0.00 0.00 2.23
142 143 2.279741 TGACGACATTCCAAGCTATGC 58.720 47.619 0.00 0.00 0.00 3.14
143 144 2.093500 TGACGACATTCCAAGCTATGCT 60.093 45.455 0.00 0.00 42.56 3.79
144 145 2.283298 ACGACATTCCAAGCTATGCTG 58.717 47.619 0.00 0.00 39.62 4.41
145 146 1.600957 CGACATTCCAAGCTATGCTGG 59.399 52.381 0.00 0.00 39.62 4.85
146 147 2.648059 GACATTCCAAGCTATGCTGGT 58.352 47.619 2.14 0.00 39.62 4.00
147 148 3.019564 GACATTCCAAGCTATGCTGGTT 58.980 45.455 2.14 0.00 39.62 3.67
148 149 4.199310 GACATTCCAAGCTATGCTGGTTA 58.801 43.478 2.14 0.00 39.62 2.85
149 150 4.599041 ACATTCCAAGCTATGCTGGTTAA 58.401 39.130 2.14 0.00 39.62 2.01
150 151 5.016173 ACATTCCAAGCTATGCTGGTTAAA 58.984 37.500 2.14 0.00 39.62 1.52
151 152 5.658190 ACATTCCAAGCTATGCTGGTTAAAT 59.342 36.000 2.14 0.00 39.62 1.40
152 153 6.833416 ACATTCCAAGCTATGCTGGTTAAATA 59.167 34.615 2.14 0.00 39.62 1.40
153 154 7.341769 ACATTCCAAGCTATGCTGGTTAAATAA 59.658 33.333 2.14 0.00 39.62 1.40
154 155 7.710676 TTCCAAGCTATGCTGGTTAAATAAA 57.289 32.000 2.14 0.00 39.62 1.40
155 156 7.710676 TCCAAGCTATGCTGGTTAAATAAAA 57.289 32.000 2.14 0.00 39.62 1.52
156 157 7.543756 TCCAAGCTATGCTGGTTAAATAAAAC 58.456 34.615 2.14 0.00 39.62 2.43
157 158 7.396055 TCCAAGCTATGCTGGTTAAATAAAACT 59.604 33.333 2.14 0.00 39.62 2.66
158 159 7.489113 CCAAGCTATGCTGGTTAAATAAAACTG 59.511 37.037 0.00 0.00 39.62 3.16
159 160 6.564328 AGCTATGCTGGTTAAATAAAACTGC 58.436 36.000 0.00 0.00 46.74 4.40
162 163 2.921121 GCTGGTTAAATAAAACTGCGGC 59.079 45.455 0.00 0.00 39.54 6.53
163 164 3.612955 GCTGGTTAAATAAAACTGCGGCA 60.613 43.478 1.29 1.29 39.54 5.69
164 165 4.165779 CTGGTTAAATAAAACTGCGGCAG 58.834 43.478 27.43 27.43 37.52 4.85
165 166 2.921121 GGTTAAATAAAACTGCGGCAGC 59.079 45.455 28.80 0.31 45.41 5.25
175 176 2.202878 GCGGCAGCGTTGATCCTA 60.203 61.111 2.38 0.00 0.00 2.94
176 177 1.813753 GCGGCAGCGTTGATCCTAA 60.814 57.895 2.38 0.00 0.00 2.69
177 178 1.366111 GCGGCAGCGTTGATCCTAAA 61.366 55.000 2.38 0.00 0.00 1.85
178 179 1.083489 CGGCAGCGTTGATCCTAAAA 58.917 50.000 2.38 0.00 0.00 1.52
179 180 1.466950 CGGCAGCGTTGATCCTAAAAA 59.533 47.619 2.38 0.00 0.00 1.94
200 201 4.766404 AAAACCATTTGGACGACTCATC 57.234 40.909 3.01 0.00 38.94 2.92
201 202 2.010145 ACCATTTGGACGACTCATCG 57.990 50.000 3.01 0.00 45.86 3.84
202 203 1.548719 ACCATTTGGACGACTCATCGA 59.451 47.619 3.01 0.00 44.37 3.59
203 204 2.674177 ACCATTTGGACGACTCATCGAC 60.674 50.000 3.01 0.00 44.37 4.20
212 213 2.886324 GACTCATCGACGCAATAACG 57.114 50.000 0.00 0.00 39.50 3.18
229 230 3.535691 CGTCCATCGTCTCTAGCAC 57.464 57.895 0.00 0.00 34.52 4.40
230 231 0.029567 CGTCCATCGTCTCTAGCACC 59.970 60.000 0.00 0.00 34.52 5.01
231 232 0.029567 GTCCATCGTCTCTAGCACCG 59.970 60.000 0.00 0.00 0.00 4.94
232 233 0.107361 TCCATCGTCTCTAGCACCGA 60.107 55.000 0.00 1.01 0.00 4.69
233 234 0.309302 CCATCGTCTCTAGCACCGAG 59.691 60.000 0.00 0.00 32.26 4.63
234 235 0.309302 CATCGTCTCTAGCACCGAGG 59.691 60.000 0.00 0.00 32.26 4.63
235 236 0.107116 ATCGTCTCTAGCACCGAGGT 60.107 55.000 0.00 0.00 32.26 3.85
236 237 0.322277 TCGTCTCTAGCACCGAGGTT 60.322 55.000 0.00 0.00 0.00 3.50
237 238 0.179161 CGTCTCTAGCACCGAGGTTG 60.179 60.000 0.00 0.00 0.00 3.77
238 239 0.889306 GTCTCTAGCACCGAGGTTGT 59.111 55.000 0.00 0.00 0.00 3.32
239 240 0.888619 TCTCTAGCACCGAGGTTGTG 59.111 55.000 0.00 0.00 36.79 3.33
244 245 4.063529 CACCGAGGTTGTGCATGT 57.936 55.556 0.00 0.00 0.00 3.21
245 246 1.868997 CACCGAGGTTGTGCATGTC 59.131 57.895 0.00 0.00 0.00 3.06
334 335 3.554342 CCCGCCCATCCTCTCCAG 61.554 72.222 0.00 0.00 0.00 3.86
365 366 4.759096 GTGCCAATGCGTCGCACC 62.759 66.667 24.34 11.69 45.64 5.01
505 2271 4.323477 CCGAACCGAACTGGCCCA 62.323 66.667 0.00 0.00 43.94 5.36
513 2279 3.316573 GAACTGGCCCAGGTCCGAG 62.317 68.421 18.54 0.00 41.87 4.63
540 2306 0.660488 AATTCGAAAGCACGTGCACA 59.340 45.000 39.21 17.84 45.16 4.57
541 2307 0.041312 ATTCGAAAGCACGTGCACAC 60.041 50.000 39.21 26.68 45.16 3.82
815 2589 6.410845 GGAACAAAAAGAAAACAAATCGCTC 58.589 36.000 0.00 0.00 0.00 5.03
920 2941 0.034960 CGGTCAGAGAGAGTGAGGGA 60.035 60.000 0.00 0.00 0.00 4.20
921 2942 1.762708 GGTCAGAGAGAGTGAGGGAG 58.237 60.000 0.00 0.00 0.00 4.30
925 2946 0.553862 AGAGAGAGTGAGGGAGGGGA 60.554 60.000 0.00 0.00 0.00 4.81
926 2947 0.106217 GAGAGAGTGAGGGAGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
967 2991 0.108281 GTACCCGCTCCTCCTGTTTC 60.108 60.000 0.00 0.00 0.00 2.78
1165 3223 1.884235 CGTGGCCTCTCTCTTTGTTT 58.116 50.000 3.32 0.00 0.00 2.83
1208 3266 4.332543 AGAGGGCCGGGGAGAACA 62.333 66.667 2.18 0.00 0.00 3.18
1220 3278 2.526873 AGAACAGGAGGCCGGTGT 60.527 61.111 1.90 0.00 31.24 4.16
1329 3389 3.122297 CTCTTGATCTGTCCTTGATCGC 58.878 50.000 0.00 0.00 42.18 4.58
1552 3615 0.387565 GAAGAGTCGGAGGGATGAGC 59.612 60.000 0.00 0.00 0.00 4.26
1572 3635 0.957395 AGAAGCCAGCATTGGTGACG 60.957 55.000 17.13 2.81 46.80 4.35
1639 3702 1.112916 CGTTTCTTGGGGCCTTGGTT 61.113 55.000 0.84 0.00 0.00 3.67
1710 3773 2.107204 AGAACAACTTGACCATCTGGCT 59.893 45.455 0.00 0.00 39.32 4.75
1767 3830 2.427753 GATGAGCCCATCCCCGAC 59.572 66.667 0.00 0.00 42.55 4.79
1831 3897 6.959871 CGACGATACTGACATGGTATACATAC 59.040 42.308 5.01 0.00 37.84 2.39
1898 3964 1.302366 CTGCTCACTGCTGTGTTTGA 58.698 50.000 21.35 3.45 44.14 2.69
1915 3981 3.827008 TTGATACTGCAGGATGAGGAC 57.173 47.619 18.52 1.28 39.69 3.85
1965 4031 1.485838 CTCATGGACATCGACAGCGC 61.486 60.000 0.00 0.00 37.46 5.92
2005 4071 1.063951 CCGCAACTGAGTACGTCGAC 61.064 60.000 5.18 5.18 0.00 4.20
2047 4113 7.052873 ACAGAGAAAATGAGGTGATCTATTGG 58.947 38.462 0.00 0.00 0.00 3.16
2122 4188 7.307694 TGTTGCATTTTCTATGACTGACATTC 58.692 34.615 0.00 0.00 40.07 2.67
2127 4193 7.627939 GCATTTTCTATGACTGACATTCTGCTT 60.628 37.037 0.00 0.00 40.07 3.91
2128 4194 6.732531 TTTCTATGACTGACATTCTGCTTG 57.267 37.500 0.00 0.00 40.07 4.01
2129 4195 5.665916 TCTATGACTGACATTCTGCTTGA 57.334 39.130 0.00 0.00 40.07 3.02
2130 4196 6.231258 TCTATGACTGACATTCTGCTTGAT 57.769 37.500 0.00 0.00 40.07 2.57
2131 4197 6.047231 TCTATGACTGACATTCTGCTTGATG 58.953 40.000 0.00 0.00 40.07 3.07
2132 4198 4.276058 TGACTGACATTCTGCTTGATGA 57.724 40.909 0.00 0.00 0.00 2.92
2133 4199 4.644498 TGACTGACATTCTGCTTGATGAA 58.356 39.130 0.00 0.00 0.00 2.57
2135 4201 5.708697 TGACTGACATTCTGCTTGATGAATT 59.291 36.000 0.00 0.00 31.35 2.17
2136 4202 6.880529 TGACTGACATTCTGCTTGATGAATTA 59.119 34.615 0.00 0.00 31.35 1.40
2137 4203 7.391275 TGACTGACATTCTGCTTGATGAATTAA 59.609 33.333 0.00 0.00 31.35 1.40
2138 4204 7.759465 ACTGACATTCTGCTTGATGAATTAAG 58.241 34.615 0.00 0.00 31.35 1.85
2139 4205 7.092137 TGACATTCTGCTTGATGAATTAAGG 57.908 36.000 0.00 0.00 31.35 2.69
2140 4206 6.660521 TGACATTCTGCTTGATGAATTAAGGT 59.339 34.615 0.00 0.00 31.35 3.50
2141 4207 7.828717 TGACATTCTGCTTGATGAATTAAGGTA 59.171 33.333 0.00 0.00 31.35 3.08
2142 4208 8.218338 ACATTCTGCTTGATGAATTAAGGTAG 57.782 34.615 0.00 0.00 31.35 3.18
2144 4210 5.126067 TCTGCTTGATGAATTAAGGTAGGC 58.874 41.667 0.00 0.00 0.00 3.93
2146 4212 3.570125 GCTTGATGAATTAAGGTAGGCCC 59.430 47.826 0.00 0.00 34.57 5.80
2147 4213 4.792068 CTTGATGAATTAAGGTAGGCCCA 58.208 43.478 0.00 0.00 34.66 5.36
2149 4215 4.728772 TGATGAATTAAGGTAGGCCCATG 58.271 43.478 0.00 0.00 34.66 3.66
2150 4216 2.944129 TGAATTAAGGTAGGCCCATGC 58.056 47.619 0.00 0.00 34.66 4.06
2151 4217 2.243478 TGAATTAAGGTAGGCCCATGCA 59.757 45.455 0.00 0.00 40.13 3.96
2153 4219 2.909504 TTAAGGTAGGCCCATGCAAA 57.090 45.000 0.00 0.00 40.13 3.68
2154 4220 2.137810 TAAGGTAGGCCCATGCAAAC 57.862 50.000 0.00 0.00 40.13 2.93
2155 4221 0.114168 AAGGTAGGCCCATGCAAACA 59.886 50.000 0.00 0.00 40.13 2.83
2158 4224 1.346068 GGTAGGCCCATGCAAACAAAA 59.654 47.619 0.00 0.00 40.13 2.44
2159 4225 2.027285 GGTAGGCCCATGCAAACAAAAT 60.027 45.455 0.00 0.00 40.13 1.82
2162 4228 4.363991 AGGCCCATGCAAACAAAATAAA 57.636 36.364 0.00 0.00 40.13 1.40
2164 4230 4.701171 AGGCCCATGCAAACAAAATAAATG 59.299 37.500 0.00 0.00 40.13 2.32
2166 4232 5.182760 GGCCCATGCAAACAAAATAAATGAA 59.817 36.000 0.00 0.00 40.13 2.57
2167 4233 6.127675 GGCCCATGCAAACAAAATAAATGAAT 60.128 34.615 0.00 0.00 40.13 2.57
2169 4235 7.813627 GCCCATGCAAACAAAATAAATGAATTT 59.186 29.630 0.00 0.00 37.47 1.82
2171 4237 9.894783 CCATGCAAACAAAATAAATGAATTTGA 57.105 25.926 0.00 0.00 37.46 2.69
2174 4240 8.896744 TGCAAACAAAATAAATGAATTTGACCA 58.103 25.926 4.65 0.00 37.46 4.02
2183 4249 6.923199 AAATGAATTTGACCAAGATCCTGT 57.077 33.333 0.00 0.00 0.00 4.00
2186 4252 8.599624 AATGAATTTGACCAAGATCCTGTAAT 57.400 30.769 0.00 0.00 0.00 1.89
2187 4253 7.630242 TGAATTTGACCAAGATCCTGTAATC 57.370 36.000 0.00 0.00 0.00 1.75
2189 4255 7.337689 TGAATTTGACCAAGATCCTGTAATCAG 59.662 37.037 0.00 0.00 41.01 2.90
2190 4256 5.762179 TTGACCAAGATCCTGTAATCAGT 57.238 39.130 0.00 0.00 39.82 3.41
2191 4257 6.867519 TTGACCAAGATCCTGTAATCAGTA 57.132 37.500 0.00 0.00 39.82 2.74
2192 4258 6.222038 TGACCAAGATCCTGTAATCAGTAC 57.778 41.667 0.00 0.00 39.82 2.73
2194 4260 5.978814 ACCAAGATCCTGTAATCAGTACAC 58.021 41.667 0.00 0.00 37.81 2.90
2195 4261 5.483937 ACCAAGATCCTGTAATCAGTACACA 59.516 40.000 0.00 0.00 37.81 3.72
2198 4264 8.204160 CCAAGATCCTGTAATCAGTACACATTA 58.796 37.037 0.00 0.00 37.81 1.90
2204 4270 9.733556 TCCTGTAATCAGTACACATTAAACAAT 57.266 29.630 0.00 0.00 37.81 2.71
2265 4384 5.876612 ACAGAGAAAATGAAGTGATCTGC 57.123 39.130 0.00 0.00 36.92 4.26
2416 4747 8.342634 CAATATTTTTATTGTGGTACTCCCTCG 58.657 37.037 0.00 0.00 33.86 4.63
2420 4751 0.113776 TTGTGGTACTCCCTCGGTCT 59.886 55.000 0.00 0.00 0.00 3.85
2433 4764 2.169352 CCTCGGTCTGGAATCAGTTGAT 59.831 50.000 0.00 0.00 41.59 2.57
2588 4919 8.604035 CGTGAGCAACTAATGTGAATATAAACT 58.396 33.333 0.00 0.00 0.00 2.66
2607 4938 5.959652 AACTTTCGAAATTTTTGGTTCGG 57.040 34.783 11.70 0.00 37.50 4.30
2708 5039 4.627284 TGGTCCGAAGATAGGTTTTTGA 57.373 40.909 0.00 0.00 0.00 2.69
2757 5129 8.843885 TTCTTATTATCATGCCTCAGATCAAG 57.156 34.615 0.00 0.00 0.00 3.02
2779 5153 6.435292 AGTACTACCTTTGAACCACTGAAT 57.565 37.500 0.00 0.00 0.00 2.57
2844 5314 7.166851 TGCAAACCATAATCAACATGGAAAAT 58.833 30.769 8.31 0.00 44.95 1.82
2893 5586 5.733620 ATTTGTTCTCATTGGCATGACTT 57.266 34.783 0.00 0.00 34.22 3.01
3114 5807 5.741011 ACTCTTTTTCCTGTTCTGTGTACA 58.259 37.500 0.00 0.00 0.00 2.90
3154 5847 8.515414 CCTCCTTAACTTTTCAGTATTTCCTTG 58.485 37.037 0.00 0.00 30.68 3.61
3352 7583 8.522830 ACTGTGTTTTGGGACTCATTATATTTG 58.477 33.333 0.00 0.00 0.00 2.32
3560 7801 3.953712 TTAGTGCTCATTTCTGACCGA 57.046 42.857 0.00 0.00 0.00 4.69
3811 8069 2.298163 GTCGGTCCTAAACACTCTGGAA 59.702 50.000 0.00 0.00 0.00 3.53
4148 8406 1.421268 TGGCAGTGGACAAAGATCTGT 59.579 47.619 0.00 0.00 0.00 3.41
4370 8628 1.732259 GCGTCCACAGGAAATACAGTG 59.268 52.381 0.00 0.00 31.38 3.66
4806 9064 6.612247 TTTGTCGTTGATCATGTTTGTAGT 57.388 33.333 0.00 0.00 0.00 2.73
5099 9381 3.813166 GTCCCAACGACATTTCAAAGAGA 59.187 43.478 0.00 0.00 41.54 3.10
5150 9432 4.890088 TCATAATACCACGTATGAAGCCC 58.110 43.478 0.00 0.00 34.55 5.19
5151 9433 2.632987 AATACCACGTATGAAGCCCC 57.367 50.000 0.00 0.00 0.00 5.80
5195 9477 5.043248 CCAAACCTAGTGCAAGAAGTTTTG 58.957 41.667 0.00 0.00 0.00 2.44
5285 9567 9.042450 TCCAAGATATTACAGGTTTTAGTCTCA 57.958 33.333 0.00 0.00 0.00 3.27
5298 9580 7.335422 AGGTTTTAGTCTCATATTGCTCAAGTG 59.665 37.037 0.00 0.00 0.00 3.16
5315 9597 1.207329 AGTGACGGGCTGGAGATTAAC 59.793 52.381 0.00 0.00 0.00 2.01
5343 9625 3.394606 AGGTGGACCTAATGTTGTGTTCT 59.605 43.478 0.00 0.00 46.48 3.01
5344 9626 4.595781 AGGTGGACCTAATGTTGTGTTCTA 59.404 41.667 0.00 0.00 46.48 2.10
5345 9627 5.072600 AGGTGGACCTAATGTTGTGTTCTAA 59.927 40.000 0.00 0.00 46.48 2.10
5364 9646 3.595190 AAAATATTAGAAGCGGGGCCT 57.405 42.857 0.84 0.00 0.00 5.19
5365 9647 3.595190 AAATATTAGAAGCGGGGCCTT 57.405 42.857 0.84 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.442699 GCAGAACGACGAACCCAATC 59.557 55.000 0.00 0.00 0.00 2.67
4 5 0.953960 GGCAGAACGACGAACCCAAT 60.954 55.000 0.00 0.00 0.00 3.16
5 6 1.595929 GGCAGAACGACGAACCCAA 60.596 57.895 0.00 0.00 0.00 4.12
6 7 2.029964 GGCAGAACGACGAACCCA 59.970 61.111 0.00 0.00 0.00 4.51
7 8 1.595929 TTGGCAGAACGACGAACCC 60.596 57.895 0.00 0.00 0.00 4.11
8 9 1.568025 GTTGGCAGAACGACGAACC 59.432 57.895 0.00 0.00 0.00 3.62
13 14 1.368850 GCAACGTTGGCAGAACGAC 60.369 57.895 28.33 5.75 45.64 4.34
14 15 1.522806 AGCAACGTTGGCAGAACGA 60.523 52.632 28.33 0.00 45.64 3.85
16 17 0.593128 ATCAGCAACGTTGGCAGAAC 59.407 50.000 28.33 11.43 30.42 3.01
17 18 0.874390 GATCAGCAACGTTGGCAGAA 59.126 50.000 28.33 11.02 30.42 3.02
18 19 0.250252 TGATCAGCAACGTTGGCAGA 60.250 50.000 28.33 21.15 0.00 4.26
19 20 0.806868 ATGATCAGCAACGTTGGCAG 59.193 50.000 28.33 17.13 0.00 4.85
20 21 2.106477 TATGATCAGCAACGTTGGCA 57.894 45.000 28.33 8.53 0.00 4.92
21 22 2.420022 ACTTATGATCAGCAACGTTGGC 59.580 45.455 28.33 19.95 0.00 4.52
22 23 4.685169 AACTTATGATCAGCAACGTTGG 57.315 40.909 28.33 13.76 0.00 3.77
23 24 4.321745 GCAAACTTATGATCAGCAACGTTG 59.678 41.667 23.90 23.90 0.00 4.10
24 25 4.216257 AGCAAACTTATGATCAGCAACGTT 59.784 37.500 0.09 0.00 0.00 3.99
25 26 3.753272 AGCAAACTTATGATCAGCAACGT 59.247 39.130 0.09 0.00 0.00 3.99
26 27 4.346734 AGCAAACTTATGATCAGCAACG 57.653 40.909 0.09 0.00 0.00 4.10
27 28 7.308435 ACTTTAGCAAACTTATGATCAGCAAC 58.692 34.615 0.09 0.00 0.00 4.17
28 29 7.452880 ACTTTAGCAAACTTATGATCAGCAA 57.547 32.000 0.09 0.00 0.00 3.91
29 30 7.280876 CCTACTTTAGCAAACTTATGATCAGCA 59.719 37.037 0.09 0.00 0.00 4.41
30 31 7.281100 ACCTACTTTAGCAAACTTATGATCAGC 59.719 37.037 0.09 0.00 0.00 4.26
31 32 8.723942 ACCTACTTTAGCAAACTTATGATCAG 57.276 34.615 0.09 0.00 0.00 2.90
32 33 9.515226 AAACCTACTTTAGCAAACTTATGATCA 57.485 29.630 0.00 0.00 0.00 2.92
33 34 9.774742 CAAACCTACTTTAGCAAACTTATGATC 57.225 33.333 0.00 0.00 0.00 2.92
34 35 8.739972 CCAAACCTACTTTAGCAAACTTATGAT 58.260 33.333 0.00 0.00 0.00 2.45
35 36 7.175990 CCCAAACCTACTTTAGCAAACTTATGA 59.824 37.037 0.00 0.00 0.00 2.15
36 37 7.039993 ACCCAAACCTACTTTAGCAAACTTATG 60.040 37.037 0.00 0.00 0.00 1.90
37 38 7.008332 ACCCAAACCTACTTTAGCAAACTTAT 58.992 34.615 0.00 0.00 0.00 1.73
38 39 6.263617 CACCCAAACCTACTTTAGCAAACTTA 59.736 38.462 0.00 0.00 0.00 2.24
39 40 5.068591 CACCCAAACCTACTTTAGCAAACTT 59.931 40.000 0.00 0.00 0.00 2.66
40 41 4.583073 CACCCAAACCTACTTTAGCAAACT 59.417 41.667 0.00 0.00 0.00 2.66
41 42 4.581409 TCACCCAAACCTACTTTAGCAAAC 59.419 41.667 0.00 0.00 0.00 2.93
42 43 4.794334 TCACCCAAACCTACTTTAGCAAA 58.206 39.130 0.00 0.00 0.00 3.68
43 44 4.440826 TCACCCAAACCTACTTTAGCAA 57.559 40.909 0.00 0.00 0.00 3.91
44 45 4.042311 TCATCACCCAAACCTACTTTAGCA 59.958 41.667 0.00 0.00 0.00 3.49
45 46 4.585879 TCATCACCCAAACCTACTTTAGC 58.414 43.478 0.00 0.00 0.00 3.09
46 47 5.805728 ACTCATCACCCAAACCTACTTTAG 58.194 41.667 0.00 0.00 0.00 1.85
47 48 5.836024 ACTCATCACCCAAACCTACTTTA 57.164 39.130 0.00 0.00 0.00 1.85
48 49 4.724279 ACTCATCACCCAAACCTACTTT 57.276 40.909 0.00 0.00 0.00 2.66
49 50 4.724279 AACTCATCACCCAAACCTACTT 57.276 40.909 0.00 0.00 0.00 2.24
50 51 5.250774 ACATAACTCATCACCCAAACCTACT 59.749 40.000 0.00 0.00 0.00 2.57
51 52 5.497474 ACATAACTCATCACCCAAACCTAC 58.503 41.667 0.00 0.00 0.00 3.18
52 53 5.772393 ACATAACTCATCACCCAAACCTA 57.228 39.130 0.00 0.00 0.00 3.08
53 54 4.657814 ACATAACTCATCACCCAAACCT 57.342 40.909 0.00 0.00 0.00 3.50
54 55 5.357032 CCTTACATAACTCATCACCCAAACC 59.643 44.000 0.00 0.00 0.00 3.27
55 56 5.944007 ACCTTACATAACTCATCACCCAAAC 59.056 40.000 0.00 0.00 0.00 2.93
56 57 5.943416 CACCTTACATAACTCATCACCCAAA 59.057 40.000 0.00 0.00 0.00 3.28
57 58 5.013704 ACACCTTACATAACTCATCACCCAA 59.986 40.000 0.00 0.00 0.00 4.12
58 59 4.534500 ACACCTTACATAACTCATCACCCA 59.466 41.667 0.00 0.00 0.00 4.51
59 60 4.876107 CACACCTTACATAACTCATCACCC 59.124 45.833 0.00 0.00 0.00 4.61
60 61 4.876107 CCACACCTTACATAACTCATCACC 59.124 45.833 0.00 0.00 0.00 4.02
61 62 4.332819 GCCACACCTTACATAACTCATCAC 59.667 45.833 0.00 0.00 0.00 3.06
62 63 4.225042 AGCCACACCTTACATAACTCATCA 59.775 41.667 0.00 0.00 0.00 3.07
63 64 4.572389 CAGCCACACCTTACATAACTCATC 59.428 45.833 0.00 0.00 0.00 2.92
64 65 4.517285 CAGCCACACCTTACATAACTCAT 58.483 43.478 0.00 0.00 0.00 2.90
65 66 3.307410 CCAGCCACACCTTACATAACTCA 60.307 47.826 0.00 0.00 0.00 3.41
66 67 3.270877 CCAGCCACACCTTACATAACTC 58.729 50.000 0.00 0.00 0.00 3.01
67 68 2.026262 CCCAGCCACACCTTACATAACT 60.026 50.000 0.00 0.00 0.00 2.24
68 69 2.365582 CCCAGCCACACCTTACATAAC 58.634 52.381 0.00 0.00 0.00 1.89
69 70 1.283613 CCCCAGCCACACCTTACATAA 59.716 52.381 0.00 0.00 0.00 1.90
70 71 0.916086 CCCCAGCCACACCTTACATA 59.084 55.000 0.00 0.00 0.00 2.29
71 72 1.140134 ACCCCAGCCACACCTTACAT 61.140 55.000 0.00 0.00 0.00 2.29
72 73 1.772567 ACCCCAGCCACACCTTACA 60.773 57.895 0.00 0.00 0.00 2.41
73 74 1.002502 GACCCCAGCCACACCTTAC 60.003 63.158 0.00 0.00 0.00 2.34
74 75 1.151899 AGACCCCAGCCACACCTTA 60.152 57.895 0.00 0.00 0.00 2.69
75 76 2.450502 AGACCCCAGCCACACCTT 60.451 61.111 0.00 0.00 0.00 3.50
76 77 2.930562 GAGACCCCAGCCACACCT 60.931 66.667 0.00 0.00 0.00 4.00
77 78 4.035102 GGAGACCCCAGCCACACC 62.035 72.222 0.00 0.00 34.14 4.16
88 89 0.325272 GACAAAGTCAGGGGGAGACC 59.675 60.000 0.00 0.00 40.48 3.85
89 90 0.325272 GGACAAAGTCAGGGGGAGAC 59.675 60.000 0.00 0.00 33.68 3.36
90 91 0.193574 AGGACAAAGTCAGGGGGAGA 59.806 55.000 0.00 0.00 33.68 3.71
91 92 1.068121 AAGGACAAAGTCAGGGGGAG 58.932 55.000 0.00 0.00 33.68 4.30
92 93 1.423921 GAAAGGACAAAGTCAGGGGGA 59.576 52.381 0.00 0.00 33.68 4.81
93 94 1.425448 AGAAAGGACAAAGTCAGGGGG 59.575 52.381 0.00 0.00 33.68 5.40
94 95 2.158608 ACAGAAAGGACAAAGTCAGGGG 60.159 50.000 0.00 0.00 33.68 4.79
95 96 3.214696 ACAGAAAGGACAAAGTCAGGG 57.785 47.619 0.00 0.00 33.68 4.45
96 97 5.120830 CGATTACAGAAAGGACAAAGTCAGG 59.879 44.000 0.00 0.00 33.68 3.86
97 98 5.389935 GCGATTACAGAAAGGACAAAGTCAG 60.390 44.000 0.00 0.00 33.68 3.51
98 99 4.451096 GCGATTACAGAAAGGACAAAGTCA 59.549 41.667 0.00 0.00 33.68 3.41
99 100 4.691216 AGCGATTACAGAAAGGACAAAGTC 59.309 41.667 0.00 0.00 0.00 3.01
100 101 4.452455 CAGCGATTACAGAAAGGACAAAGT 59.548 41.667 0.00 0.00 0.00 2.66
101 102 4.690748 TCAGCGATTACAGAAAGGACAAAG 59.309 41.667 0.00 0.00 0.00 2.77
102 103 4.451096 GTCAGCGATTACAGAAAGGACAAA 59.549 41.667 0.00 0.00 0.00 2.83
103 104 3.994392 GTCAGCGATTACAGAAAGGACAA 59.006 43.478 0.00 0.00 0.00 3.18
104 105 3.585862 GTCAGCGATTACAGAAAGGACA 58.414 45.455 0.00 0.00 0.00 4.02
105 106 2.599082 CGTCAGCGATTACAGAAAGGAC 59.401 50.000 0.00 0.00 41.33 3.85
106 107 2.490509 TCGTCAGCGATTACAGAAAGGA 59.509 45.455 0.00 0.00 42.81 3.36
107 108 2.876091 TCGTCAGCGATTACAGAAAGG 58.124 47.619 0.00 0.00 42.81 3.11
118 119 1.014044 GCTTGGAATGTCGTCAGCGA 61.014 55.000 0.00 0.00 45.79 4.93
119 120 1.016130 AGCTTGGAATGTCGTCAGCG 61.016 55.000 0.00 0.00 39.92 5.18
120 121 2.010145 TAGCTTGGAATGTCGTCAGC 57.990 50.000 0.00 0.00 0.00 4.26
121 122 2.286294 GCATAGCTTGGAATGTCGTCAG 59.714 50.000 0.00 0.00 0.00 3.51
122 123 2.093500 AGCATAGCTTGGAATGTCGTCA 60.093 45.455 0.00 0.00 33.89 4.35
123 124 2.286294 CAGCATAGCTTGGAATGTCGTC 59.714 50.000 0.00 0.00 36.40 4.20
124 125 2.283298 CAGCATAGCTTGGAATGTCGT 58.717 47.619 0.00 0.00 36.40 4.34
125 126 1.600957 CCAGCATAGCTTGGAATGTCG 59.399 52.381 0.00 0.00 36.40 4.35
126 127 2.648059 ACCAGCATAGCTTGGAATGTC 58.352 47.619 9.19 0.00 36.40 3.06
127 128 2.814805 ACCAGCATAGCTTGGAATGT 57.185 45.000 9.19 0.00 36.40 2.71
128 129 5.581126 TTTAACCAGCATAGCTTGGAATG 57.419 39.130 9.19 0.00 36.40 2.67
129 130 7.896383 TTATTTAACCAGCATAGCTTGGAAT 57.104 32.000 9.19 1.77 36.40 3.01
130 131 7.710676 TTTATTTAACCAGCATAGCTTGGAA 57.289 32.000 9.19 0.00 36.40 3.53
131 132 7.396055 AGTTTTATTTAACCAGCATAGCTTGGA 59.604 33.333 9.19 0.00 36.40 3.53
132 133 7.489113 CAGTTTTATTTAACCAGCATAGCTTGG 59.511 37.037 0.37 0.37 36.40 3.61
133 134 7.009540 GCAGTTTTATTTAACCAGCATAGCTTG 59.990 37.037 0.00 0.00 36.40 4.01
134 135 7.035612 GCAGTTTTATTTAACCAGCATAGCTT 58.964 34.615 0.00 0.00 36.40 3.74
135 136 6.564328 GCAGTTTTATTTAACCAGCATAGCT 58.436 36.000 0.00 0.00 40.77 3.32
136 137 5.455525 CGCAGTTTTATTTAACCAGCATAGC 59.544 40.000 0.00 0.00 32.36 2.97
137 138 5.971202 CCGCAGTTTTATTTAACCAGCATAG 59.029 40.000 0.00 0.00 32.36 2.23
138 139 5.677598 GCCGCAGTTTTATTTAACCAGCATA 60.678 40.000 0.00 0.00 32.36 3.14
139 140 4.743493 CCGCAGTTTTATTTAACCAGCAT 58.257 39.130 0.00 0.00 32.36 3.79
140 141 3.612955 GCCGCAGTTTTATTTAACCAGCA 60.613 43.478 0.00 0.00 32.36 4.41
141 142 2.921121 GCCGCAGTTTTATTTAACCAGC 59.079 45.455 0.00 0.00 0.00 4.85
142 143 4.165779 CTGCCGCAGTTTTATTTAACCAG 58.834 43.478 12.54 0.00 0.00 4.00
143 144 3.612955 GCTGCCGCAGTTTTATTTAACCA 60.613 43.478 21.29 0.00 33.43 3.67
144 145 2.921121 GCTGCCGCAGTTTTATTTAACC 59.079 45.455 21.29 0.00 33.43 2.85
145 146 2.592459 CGCTGCCGCAGTTTTATTTAAC 59.408 45.455 21.29 0.14 35.30 2.01
146 147 2.226912 ACGCTGCCGCAGTTTTATTTAA 59.773 40.909 21.29 0.00 38.22 1.52
147 148 1.807742 ACGCTGCCGCAGTTTTATTTA 59.192 42.857 21.29 0.00 38.22 1.40
148 149 0.596082 ACGCTGCCGCAGTTTTATTT 59.404 45.000 21.29 0.00 38.22 1.40
149 150 0.596082 AACGCTGCCGCAGTTTTATT 59.404 45.000 21.29 6.58 38.22 1.40
150 151 0.109781 CAACGCTGCCGCAGTTTTAT 60.110 50.000 21.29 1.83 38.22 1.40
151 152 1.160946 TCAACGCTGCCGCAGTTTTA 61.161 50.000 21.29 4.71 38.22 1.52
152 153 1.795170 ATCAACGCTGCCGCAGTTTT 61.795 50.000 21.29 11.77 38.22 2.43
153 154 2.187599 GATCAACGCTGCCGCAGTTT 62.188 55.000 21.29 12.11 38.22 2.66
154 155 2.669569 ATCAACGCTGCCGCAGTT 60.670 55.556 21.29 7.19 38.22 3.16
155 156 3.121030 GATCAACGCTGCCGCAGT 61.121 61.111 21.29 0.47 38.22 4.40
156 157 2.906182 TAGGATCAACGCTGCCGCAG 62.906 60.000 16.47 16.47 38.22 5.18
157 158 2.514510 TTAGGATCAACGCTGCCGCA 62.515 55.000 0.00 0.00 38.22 5.69
158 159 1.366111 TTTAGGATCAACGCTGCCGC 61.366 55.000 0.00 0.00 38.22 6.53
159 160 1.083489 TTTTAGGATCAACGCTGCCG 58.917 50.000 0.00 0.00 41.14 5.69
178 179 4.320202 CGATGAGTCGTCCAAATGGTTTTT 60.320 41.667 6.77 0.00 42.78 1.94
179 180 3.188460 CGATGAGTCGTCCAAATGGTTTT 59.812 43.478 6.77 0.00 42.78 2.43
180 181 2.742053 CGATGAGTCGTCCAAATGGTTT 59.258 45.455 6.77 0.00 42.78 3.27
181 182 2.346803 CGATGAGTCGTCCAAATGGTT 58.653 47.619 6.77 0.00 42.78 3.67
182 183 2.010145 CGATGAGTCGTCCAAATGGT 57.990 50.000 6.77 0.00 42.78 3.55
191 192 5.789944 ACGTTATTGCGTCGATGAGTCGT 62.790 47.826 9.31 6.83 41.71 4.34
192 193 3.347499 ACGTTATTGCGTCGATGAGTCG 61.347 50.000 9.31 0.00 41.71 4.18
193 194 2.182825 ACGTTATTGCGTCGATGAGTC 58.817 47.619 9.31 0.00 41.71 3.36
194 195 2.273370 ACGTTATTGCGTCGATGAGT 57.727 45.000 9.31 0.00 41.71 3.41
212 213 0.029567 CGGTGCTAGAGACGATGGAC 59.970 60.000 0.00 0.00 0.00 4.02
213 214 0.107361 TCGGTGCTAGAGACGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
214 215 0.309302 CTCGGTGCTAGAGACGATGG 59.691 60.000 0.00 0.00 37.93 3.51
215 216 0.309302 CCTCGGTGCTAGAGACGATG 59.691 60.000 0.00 0.00 37.93 3.84
216 217 0.107116 ACCTCGGTGCTAGAGACGAT 60.107 55.000 0.00 0.00 37.93 3.73
217 218 0.322277 AACCTCGGTGCTAGAGACGA 60.322 55.000 0.00 0.00 37.93 4.20
218 219 0.179161 CAACCTCGGTGCTAGAGACG 60.179 60.000 0.00 0.00 37.93 4.18
219 220 0.889306 ACAACCTCGGTGCTAGAGAC 59.111 55.000 0.00 0.00 37.93 3.36
220 221 0.888619 CACAACCTCGGTGCTAGAGA 59.111 55.000 0.00 0.00 37.93 3.10
221 222 3.425578 CACAACCTCGGTGCTAGAG 57.574 57.895 0.00 0.00 35.60 2.43
227 228 0.884259 TGACATGCACAACCTCGGTG 60.884 55.000 0.00 0.00 39.25 4.94
228 229 0.179032 TTGACATGCACAACCTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
229 230 0.238289 GTTGACATGCACAACCTCGG 59.762 55.000 19.22 0.00 40.86 4.63
230 231 0.943673 TGTTGACATGCACAACCTCG 59.056 50.000 23.85 0.00 44.49 4.63
231 232 1.949525 ACTGTTGACATGCACAACCTC 59.050 47.619 23.85 8.67 44.49 3.85
232 233 1.677576 CACTGTTGACATGCACAACCT 59.322 47.619 23.85 12.58 44.49 3.50
233 234 1.865248 GCACTGTTGACATGCACAACC 60.865 52.381 23.85 11.57 44.49 3.77
234 235 1.202279 TGCACTGTTGACATGCACAAC 60.202 47.619 21.61 21.61 44.17 3.32
235 236 1.101331 TGCACTGTTGACATGCACAA 58.899 45.000 13.43 0.00 44.17 3.33
236 237 2.791170 TGCACTGTTGACATGCACA 58.209 47.368 13.43 0.00 44.17 4.57
239 240 1.270274 TGGATTGCACTGTTGACATGC 59.730 47.619 0.00 9.89 39.88 4.06
240 241 2.666344 CGTGGATTGCACTGTTGACATG 60.666 50.000 6.74 0.00 0.00 3.21
241 242 1.536766 CGTGGATTGCACTGTTGACAT 59.463 47.619 6.74 0.00 0.00 3.06
242 243 0.943673 CGTGGATTGCACTGTTGACA 59.056 50.000 6.74 0.00 0.00 3.58
243 244 0.385974 GCGTGGATTGCACTGTTGAC 60.386 55.000 6.74 0.00 0.00 3.18
244 245 1.514678 GGCGTGGATTGCACTGTTGA 61.515 55.000 6.74 0.00 0.00 3.18
245 246 1.081242 GGCGTGGATTGCACTGTTG 60.081 57.895 6.74 0.00 0.00 3.33
316 317 4.088351 TGGAGAGGATGGGCGGGA 62.088 66.667 0.00 0.00 0.00 5.14
365 366 1.009449 GAATCGAGTCCGCTCTCCG 60.009 63.158 0.28 0.00 39.53 4.63
505 2271 1.265454 AATTCTTCGGCCTCGGACCT 61.265 55.000 0.00 0.00 36.95 3.85
786 2560 2.498078 TGTTTTCTTTTTGTTCCGGGCT 59.502 40.909 0.00 0.00 0.00 5.19
788 2562 5.276631 CGATTTGTTTTCTTTTTGTTCCGGG 60.277 40.000 0.00 0.00 0.00 5.73
789 2563 5.723237 CGATTTGTTTTCTTTTTGTTCCGG 58.277 37.500 0.00 0.00 0.00 5.14
815 2589 4.381932 CGGGAAGGAAAGATTTGGGATTTG 60.382 45.833 0.00 0.00 0.00 2.32
920 2941 1.977544 CAACGTCCGTCTCTCCCCT 60.978 63.158 0.00 0.00 0.00 4.79
921 2942 2.572284 CAACGTCCGTCTCTCCCC 59.428 66.667 0.00 0.00 0.00 4.81
925 2946 0.670546 CAATGGCAACGTCCGTCTCT 60.671 55.000 0.00 0.00 42.51 3.10
926 2947 0.949105 ACAATGGCAACGTCCGTCTC 60.949 55.000 0.00 0.00 42.51 3.36
984 3008 2.759973 ATGCGAAGAGGGAGCGGA 60.760 61.111 0.00 0.00 0.00 5.54
1107 3165 1.632046 GAACGGAAGGCGCGATTCAA 61.632 55.000 21.11 0.00 0.00 2.69
1151 3209 3.339141 GGCACCTAAACAAAGAGAGAGG 58.661 50.000 0.00 0.00 0.00 3.69
1329 3389 0.250209 CCGATTCCCCATCTCTGCAG 60.250 60.000 7.63 7.63 0.00 4.41
1432 3492 0.177141 TTTAACAGATCGGGCGAGGG 59.823 55.000 0.00 0.00 0.00 4.30
1475 3536 2.092968 TCTCGATCCAAGAAACATGGGG 60.093 50.000 0.00 0.00 38.54 4.96
1505 3566 0.323957 AAGAAAGGTAGGACACGCCC 59.676 55.000 0.00 0.00 37.37 6.13
1529 3592 0.397816 ATCCCTCCGACTCTTCCTGG 60.398 60.000 0.00 0.00 0.00 4.45
1596 3659 2.394563 GCACAAGAAGAGGGAGCGC 61.395 63.158 0.00 0.00 0.00 5.92
1639 3702 7.252612 TCCTGAATTAACAGAGTGGTATCAA 57.747 36.000 0.00 0.00 39.94 2.57
1767 3830 1.080501 ATCAGTGTCAGCGGTGTCG 60.081 57.895 15.22 0.18 39.81 4.35
1831 3897 3.125829 ACAGTGCTAATCATCACAAAGCG 59.874 43.478 0.00 0.00 35.95 4.68
1898 3964 2.073252 TCGTCCTCATCCTGCAGTAT 57.927 50.000 13.81 0.00 0.00 2.12
1915 3981 3.819564 TCCACAATATCCTCCTGTTCG 57.180 47.619 0.00 0.00 0.00 3.95
2005 4071 6.438259 TCTCTGTAGAACCTGTAAATCTCG 57.562 41.667 0.00 0.00 0.00 4.04
2122 4188 4.276926 GGCCTACCTTAATTCATCAAGCAG 59.723 45.833 0.00 0.00 0.00 4.24
2127 4193 4.728772 CATGGGCCTACCTTAATTCATCA 58.271 43.478 4.53 0.00 41.11 3.07
2128 4194 3.507622 GCATGGGCCTACCTTAATTCATC 59.492 47.826 4.53 0.00 41.11 2.92
2129 4195 3.117169 TGCATGGGCCTACCTTAATTCAT 60.117 43.478 4.53 0.00 41.11 2.57
2130 4196 2.243478 TGCATGGGCCTACCTTAATTCA 59.757 45.455 4.53 0.00 41.11 2.57
2131 4197 2.944129 TGCATGGGCCTACCTTAATTC 58.056 47.619 4.53 0.00 41.11 2.17
2132 4198 3.396685 TTGCATGGGCCTACCTTAATT 57.603 42.857 4.53 0.00 41.11 1.40
2133 4199 3.031013 GTTTGCATGGGCCTACCTTAAT 58.969 45.455 4.53 0.00 41.11 1.40
2135 4201 1.356059 TGTTTGCATGGGCCTACCTTA 59.644 47.619 4.53 0.00 41.11 2.69
2136 4202 0.114168 TGTTTGCATGGGCCTACCTT 59.886 50.000 4.53 0.00 41.11 3.50
2137 4203 0.114168 TTGTTTGCATGGGCCTACCT 59.886 50.000 4.53 0.00 41.11 3.08
2138 4204 0.972883 TTTGTTTGCATGGGCCTACC 59.027 50.000 4.53 0.00 40.13 3.18
2139 4205 2.829741 TTTTGTTTGCATGGGCCTAC 57.170 45.000 4.53 0.00 40.13 3.18
2140 4206 5.489792 TTTATTTTGTTTGCATGGGCCTA 57.510 34.783 4.53 0.00 40.13 3.93
2141 4207 4.363991 TTTATTTTGTTTGCATGGGCCT 57.636 36.364 4.53 0.00 40.13 5.19
2142 4208 4.699257 TCATTTATTTTGTTTGCATGGGCC 59.301 37.500 0.00 0.00 40.13 5.80
2144 4210 9.130312 CAAATTCATTTATTTTGTTTGCATGGG 57.870 29.630 0.00 0.00 0.00 4.00
2147 4213 9.896263 GGTCAAATTCATTTATTTTGTTTGCAT 57.104 25.926 0.00 0.00 32.64 3.96
2149 4215 9.727627 TTGGTCAAATTCATTTATTTTGTTTGC 57.272 25.926 0.00 0.00 32.64 3.68
2158 4224 8.599624 ACAGGATCTTGGTCAAATTCATTTAT 57.400 30.769 9.90 0.00 0.00 1.40
2159 4225 9.527157 TTACAGGATCTTGGTCAAATTCATTTA 57.473 29.630 9.90 0.00 0.00 1.40
2162 4228 7.835682 TGATTACAGGATCTTGGTCAAATTCAT 59.164 33.333 9.90 0.00 0.00 2.57
2164 4230 7.630242 TGATTACAGGATCTTGGTCAAATTC 57.370 36.000 9.90 0.00 0.00 2.17
2212 4278 9.569167 CTTGTAAATCTCTTCGACATACTACAA 57.431 33.333 0.00 0.00 0.00 2.41
2213 4279 8.737175 ACTTGTAAATCTCTTCGACATACTACA 58.263 33.333 0.00 0.00 0.00 2.74
2214 4280 9.570488 AACTTGTAAATCTCTTCGACATACTAC 57.430 33.333 0.00 0.00 0.00 2.73
2215 4281 9.784680 GAACTTGTAAATCTCTTCGACATACTA 57.215 33.333 0.00 0.00 0.00 1.82
2220 4286 7.654568 TGTAGAACTTGTAAATCTCTTCGACA 58.345 34.615 0.00 0.00 0.00 4.35
2221 4287 8.021973 TCTGTAGAACTTGTAAATCTCTTCGAC 58.978 37.037 0.00 0.00 0.00 4.20
2222 4288 8.107399 TCTGTAGAACTTGTAAATCTCTTCGA 57.893 34.615 0.00 0.00 0.00 3.71
2223 4289 8.237949 TCTCTGTAGAACTTGTAAATCTCTTCG 58.762 37.037 0.00 0.00 0.00 3.79
2224 4290 9.915629 TTCTCTGTAGAACTTGTAAATCTCTTC 57.084 33.333 0.00 0.00 36.80 2.87
2405 4734 0.324091 TTCCAGACCGAGGGAGTACC 60.324 60.000 0.00 0.00 40.67 3.34
2416 4747 2.941720 GAGCATCAACTGATTCCAGACC 59.058 50.000 0.00 0.00 38.35 3.85
2433 4764 0.033366 TCTAGCACTGCGTTTGAGCA 59.967 50.000 0.00 0.00 45.96 4.26
2588 4919 4.113354 CACCCGAACCAAAAATTTCGAAA 58.887 39.130 13.91 13.91 46.01 3.46
2591 4922 3.047093 GTCACCCGAACCAAAAATTTCG 58.953 45.455 0.00 0.00 43.40 3.46
2607 4938 2.159142 CCTTACTGTCATACCGGTCACC 60.159 54.545 12.40 0.00 0.00 4.02
2757 5129 6.708949 TGAATTCAGTGGTTCAAAGGTAGTAC 59.291 38.462 3.38 0.00 31.85 2.73
2779 5153 8.372459 AGTTTACTATGAGTGTATGTGGTTGAA 58.628 33.333 0.00 0.00 0.00 2.69
2844 5314 7.606073 TGCTATCAGCTGTCATAAACAAAACTA 59.394 33.333 14.67 0.00 42.97 2.24
3033 5726 6.367686 CACAAATTGCTATCAGCTGTCATA 57.632 37.500 14.67 4.25 42.97 2.15
3034 5727 5.244785 CACAAATTGCTATCAGCTGTCAT 57.755 39.130 14.67 3.11 42.97 3.06
3035 5728 4.690184 CACAAATTGCTATCAGCTGTCA 57.310 40.909 14.67 5.19 42.97 3.58
3114 5807 0.853530 AGGAGGCCAAAACCTTCAGT 59.146 50.000 5.01 0.00 41.32 3.41
3352 7583 8.999431 TGTAATGAACCTATCAAGTGAGAAAAC 58.001 33.333 0.00 0.00 42.54 2.43
3357 7588 8.553459 AACTTGTAATGAACCTATCAAGTGAG 57.447 34.615 8.70 0.00 42.60 3.51
3527 7768 5.689383 TGAGCACTAAATCTTCAACAACC 57.311 39.130 0.00 0.00 0.00 3.77
3560 7801 6.613153 AGAATCTGTCCTTTAGTGTAAGCT 57.387 37.500 0.00 0.00 0.00 3.74
3811 8069 3.682858 GCGTTGGTACAGACATGTTGTAT 59.317 43.478 17.83 2.37 42.39 2.29
4148 8406 6.357367 TCTAGTGTATCTGCTATGTGTCTCA 58.643 40.000 0.00 0.00 0.00 3.27
4339 8597 0.320421 TGTGGACGCCTGTAAGCTTC 60.320 55.000 0.00 0.00 0.00 3.86
4370 8628 2.865551 CCACACAACCAAACTTGAATGC 59.134 45.455 0.00 0.00 0.00 3.56
4769 9027 4.343811 ACGACAAATTGTGAACGAAACA 57.656 36.364 2.20 0.00 35.67 2.83
4834 9092 3.142951 TGGGACGAAAACACCATAGTTG 58.857 45.455 0.00 0.00 0.00 3.16
5099 9381 1.704641 GACCCCCTTTGTTTCAGCTT 58.295 50.000 0.00 0.00 0.00 3.74
5147 9429 7.657354 GGAATTTTCATAATTCAGTAATGGGGC 59.343 37.037 11.14 0.00 38.15 5.80
5177 9459 3.253432 GGACCAAAACTTCTTGCACTAGG 59.747 47.826 0.00 0.00 0.00 3.02
5195 9477 1.757682 TGTTTCAACAGTGTGGGACC 58.242 50.000 0.00 0.00 34.30 4.46
5276 9558 6.531594 CGTCACTTGAGCAATATGAGACTAAA 59.468 38.462 0.00 0.00 0.00 1.85
5285 9567 1.210478 AGCCCGTCACTTGAGCAATAT 59.790 47.619 0.00 0.00 0.00 1.28
5298 9580 0.458669 TCGTTAATCTCCAGCCCGTC 59.541 55.000 0.00 0.00 0.00 4.79
5315 9597 5.064707 CACAACATTAGGTCCACCTTATTCG 59.935 44.000 2.90 0.00 46.09 3.34
5343 9625 4.717279 AGGCCCCGCTTCTAATATTTTA 57.283 40.909 0.00 0.00 0.00 1.52
5344 9626 3.595190 AGGCCCCGCTTCTAATATTTT 57.405 42.857 0.00 0.00 0.00 1.82
5345 9627 3.595190 AAGGCCCCGCTTCTAATATTT 57.405 42.857 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.