Multiple sequence alignment - TraesCS2D01G401500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G401500 chr2D 100.000 5700 0 0 1 5700 516366354 516372053 0.000000e+00 10527.0
1 TraesCS2D01G401500 chr2D 86.120 317 42 1 4218 4534 14105285 14104971 1.970000e-89 340.0
2 TraesCS2D01G401500 chr2D 84.342 281 38 5 5422 5700 493173349 493173073 2.620000e-68 270.0
3 TraesCS2D01G401500 chr2D 90.667 150 14 0 2104 2253 14106351 14106202 3.480000e-47 200.0
4 TraesCS2D01G401500 chr2D 76.131 398 76 14 4100 4486 39320843 39320454 2.100000e-44 191.0
5 TraesCS2D01G401500 chr2D 78.750 240 40 10 3489 3724 570106971 570106739 3.560000e-32 150.0
6 TraesCS2D01G401500 chr2D 100.000 30 0 0 997 1026 14107629 14107600 7.980000e-04 56.5
7 TraesCS2D01G401500 chr2A 91.182 2030 106 29 3324 5339 660223279 660225249 0.000000e+00 2689.0
8 TraesCS2D01G401500 chr2A 90.263 1520 83 27 21 1504 660218534 660220024 0.000000e+00 1927.0
9 TraesCS2D01G401500 chr2A 90.837 884 59 13 2304 3177 660222408 660223279 0.000000e+00 1164.0
10 TraesCS2D01G401500 chr2A 90.354 311 16 9 1499 1801 660221558 660221862 4.140000e-106 396.0
11 TraesCS2D01G401500 chr2A 86.452 310 42 0 4218 4527 16475414 16475105 1.970000e-89 340.0
12 TraesCS2D01G401500 chr2A 95.215 209 5 3 2075 2279 660222209 660222416 5.510000e-85 326.0
13 TraesCS2D01G401500 chr2A 81.698 377 51 8 5340 5700 233179557 233179183 1.200000e-76 298.0
14 TraesCS2D01G401500 chr2A 83.898 236 23 7 1789 2015 660221877 660222106 1.610000e-50 211.0
15 TraesCS2D01G401500 chr2A 90.446 157 14 1 2098 2253 16478007 16477851 7.490000e-49 206.0
16 TraesCS2D01G401500 chr2A 82.353 68 9 2 997 1064 16479348 16479284 7.980000e-04 56.5
17 TraesCS2D01G401500 chr2B 88.662 2011 101 52 21 1979 607949333 607951268 0.000000e+00 2333.0
18 TraesCS2D01G401500 chr2B 90.999 1422 92 21 3324 4739 607952483 607953874 0.000000e+00 1884.0
19 TraesCS2D01G401500 chr2B 92.993 685 37 7 2104 2785 607951455 607952131 0.000000e+00 989.0
20 TraesCS2D01G401500 chr2B 83.227 626 63 22 4729 5339 607953898 607954496 2.340000e-148 536.0
21 TraesCS2D01G401500 chr2B 90.782 358 30 3 2821 3177 607952128 607952483 5.170000e-130 475.0
22 TraesCS2D01G401500 chr2B 84.665 313 48 0 4218 4530 25672937 25672625 4.290000e-81 313.0
23 TraesCS2D01G401500 chr2B 86.328 256 33 2 5426 5679 483542671 483542416 1.560000e-70 278.0
24 TraesCS2D01G401500 chr2B 89.744 156 16 0 2098 2253 25687536 25687381 3.480000e-47 200.0
25 TraesCS2D01G401500 chr2B 94.030 67 3 1 4890 4956 607954029 607954094 3.630000e-17 100.0
26 TraesCS2D01G401500 chr2B 100.000 30 0 0 997 1026 25689002 25688973 7.980000e-04 56.5
27 TraesCS2D01G401500 chr6B 86.158 419 52 5 4099 4514 490255652 490256067 1.130000e-121 448.0
28 TraesCS2D01G401500 chr6D 85.450 433 57 5 4085 4514 330157621 330157192 4.050000e-121 446.0
29 TraesCS2D01G401500 chr6D 89.121 239 25 1 1369 1606 330158567 330158329 4.320000e-76 296.0
30 TraesCS2D01G401500 chr6A 85.219 433 58 5 4085 4514 469432340 469431911 1.890000e-119 440.0
31 TraesCS2D01G401500 chr1D 84.514 381 43 11 5333 5700 398948406 398948783 4.200000e-96 363.0
32 TraesCS2D01G401500 chr1D 85.214 257 32 5 5422 5676 29803876 29804128 5.670000e-65 259.0
33 TraesCS2D01G401500 chr3D 87.319 276 29 5 5426 5700 234827191 234826921 1.540000e-80 311.0
34 TraesCS2D01G401500 chr3D 80.117 171 30 4 1422 1590 609741250 609741082 2.160000e-24 124.0
35 TraesCS2D01G401500 chr7A 80.250 400 46 5 5334 5700 447324637 447325036 2.620000e-68 270.0
36 TraesCS2D01G401500 chr7A 80.247 243 36 11 4100 4336 608359403 608359639 7.590000e-39 172.0
37 TraesCS2D01G401500 chr4A 84.000 275 39 5 5422 5695 467343582 467343852 5.670000e-65 259.0
38 TraesCS2D01G401500 chrUn 97.987 149 2 1 3177 3324 425608154 425608302 2.040000e-64 257.0
39 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 199871906 199871758 9.480000e-63 252.0
40 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 199901826 199901678 9.480000e-63 252.0
41 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 216063622 216063770 9.480000e-63 252.0
42 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 220754194 220754342 9.480000e-63 252.0
43 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 220756681 220756829 9.480000e-63 252.0
44 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 229313145 229313293 9.480000e-63 252.0
45 TraesCS2D01G401500 chrUn 97.315 149 3 1 3177 3324 234555704 234555852 9.480000e-63 252.0
46 TraesCS2D01G401500 chr1A 97.987 149 2 1 3177 3324 37467 37319 2.040000e-64 257.0
47 TraesCS2D01G401500 chr1B 83.214 280 36 7 5422 5700 458685600 458685869 4.410000e-61 246.0
48 TraesCS2D01G401500 chr1B 81.071 280 50 3 5422 5698 562622055 562621776 2.670000e-53 220.0
49 TraesCS2D01G401500 chr3B 81.495 281 43 7 5426 5700 467975028 467974751 7.430000e-54 222.0
50 TraesCS2D01G401500 chr3B 77.632 228 45 6 1365 1590 820905702 820905479 3.580000e-27 134.0
51 TraesCS2D01G401500 chr3B 92.308 39 3 0 3495 3533 806143889 806143851 7.980000e-04 56.5
52 TraesCS2D01G401500 chr3A 78.070 228 44 6 1365 1590 743379979 743379756 7.700000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G401500 chr2D 516366354 516372053 5699 False 10527.000000 10527 100.0000 1 5700 1 chr2D.!!$F1 5699
1 TraesCS2D01G401500 chr2A 660218534 660225249 6715 False 1118.833333 2689 90.2915 21 5339 6 chr2A.!!$F1 5318
2 TraesCS2D01G401500 chr2A 16475105 16479348 4243 True 200.833333 340 86.4170 997 4527 3 chr2A.!!$R2 3530
3 TraesCS2D01G401500 chr2B 607949333 607954496 5163 False 1052.833333 2333 90.1155 21 5339 6 chr2B.!!$F1 5318
4 TraesCS2D01G401500 chr6D 330157192 330158567 1375 True 371.000000 446 87.2855 1369 4514 2 chr6D.!!$R1 3145
5 TraesCS2D01G401500 chrUn 220754194 220756829 2635 False 252.000000 252 97.3150 3177 3324 2 chrUn.!!$F5 147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 478 0.317160 GACAGTGACCGGACATGTCA 59.683 55.0 27.11 13.66 39.97 3.58 F
983 1034 1.063806 CGTCGAGCTTTCTCCAGTTG 58.936 55.0 0.00 0.00 35.94 3.16 F
1623 3907 0.319405 GTACGCACCACTACAACCCT 59.681 55.0 0.00 0.00 0.00 4.34 F
2555 5009 0.036875 GACAAGAACTGGGACCTGGG 59.963 60.0 0.00 0.00 0.00 4.45 F
2666 5128 0.539051 CCCAGAGCCCACTTGTCTAG 59.461 60.0 0.00 0.00 0.00 2.43 F
3088 5556 1.259609 TGCTGGATTTCAAAGCCCAG 58.740 50.0 14.18 14.18 46.67 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 3905 0.032017 AGGAGCTGGTGGTAGGTAGG 60.032 60.0 0.00 0.0 0.00 3.18 R
1854 4171 0.473755 ACTGTCTGGCCATGTGAACA 59.526 50.0 5.51 5.4 0.00 3.18 R
3203 5671 0.113776 TGGTAGGATAGGGGCTACCG 59.886 60.0 0.00 0.0 46.96 4.02 R
3844 6321 0.254178 ACAGATCCGCCTTCTGCAAT 59.746 50.0 7.22 0.0 43.57 3.56 R
4000 6480 0.533531 TGCTATGGAGAGGCATTGCG 60.534 55.0 1.91 0.0 33.48 4.85 R
4780 9114 0.401738 CCAGGAGAAGCCCAAGACAA 59.598 55.0 0.00 0.0 37.37 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.706636 CCTACCCATTGCGGTGATG 58.293 57.895 6.98 0.00 36.56 3.07
19 20 0.819259 CCTACCCATTGCGGTGATGG 60.819 60.000 6.98 5.20 42.99 3.51
54 55 1.420532 TTGTTCAGGTTAGGCCCGGT 61.421 55.000 0.00 0.00 38.26 5.28
79 81 2.100631 CGCCAAGCACGGGTAGAAG 61.101 63.158 0.00 0.00 0.00 2.85
81 83 1.298859 GCCAAGCACGGGTAGAAGTG 61.299 60.000 0.00 0.00 41.01 3.16
82 84 0.320374 CCAAGCACGGGTAGAAGTGA 59.680 55.000 0.00 0.00 40.56 3.41
83 85 1.429463 CAAGCACGGGTAGAAGTGAC 58.571 55.000 0.00 0.00 40.56 3.67
84 86 1.000955 CAAGCACGGGTAGAAGTGACT 59.999 52.381 0.00 0.00 40.56 3.41
213 223 2.969950 AGTATAATGGCCGCTTGGAGTA 59.030 45.455 0.00 0.00 33.02 2.59
245 256 2.029020 CCTTTGCCTTTACCTTTGCCTC 60.029 50.000 0.00 0.00 0.00 4.70
303 317 3.112075 CGCAGCACGGTACCTGTG 61.112 66.667 23.91 23.91 40.32 3.66
325 339 4.308526 GGACTGACCGGACTCGTA 57.691 61.111 9.46 0.00 33.95 3.43
449 478 0.317160 GACAGTGACCGGACATGTCA 59.683 55.000 27.11 13.66 39.97 3.58
537 566 1.583967 GAGCAGACACCGATCGACG 60.584 63.158 18.66 9.51 42.18 5.12
634 666 1.429423 GCGCTTTATCTGGCCACAC 59.571 57.895 0.00 0.00 0.00 3.82
642 674 2.425143 ATCTGGCCACACAATCGAAT 57.575 45.000 0.00 0.00 0.00 3.34
652 684 4.440758 CCACACAATCGAATCAAAACACAC 59.559 41.667 0.00 0.00 0.00 3.82
653 685 5.273170 CACACAATCGAATCAAAACACACT 58.727 37.500 0.00 0.00 0.00 3.55
658 690 6.910433 ACAATCGAATCAAAACACACTTACAC 59.090 34.615 0.00 0.00 0.00 2.90
659 691 6.612247 ATCGAATCAAAACACACTTACACA 57.388 33.333 0.00 0.00 0.00 3.72
661 693 5.351740 TCGAATCAAAACACACTTACACACA 59.648 36.000 0.00 0.00 0.00 3.72
697 735 2.379634 GCACGCGTATGTCTGCACA 61.380 57.895 13.44 0.00 36.78 4.57
705 743 2.154462 GTATGTCTGCACAGCACCTTT 58.846 47.619 0.00 0.00 35.41 3.11
897 943 1.826054 AGCATCTCTCGCCGTAGCT 60.826 57.895 0.00 0.00 36.60 3.32
929 980 4.647825 TCTCGAGCTGGAGAGGAC 57.352 61.111 22.96 0.00 38.12 3.85
983 1034 1.063806 CGTCGAGCTTTCTCCAGTTG 58.936 55.000 0.00 0.00 35.94 3.16
984 1035 1.335964 CGTCGAGCTTTCTCCAGTTGA 60.336 52.381 0.00 0.00 35.94 3.18
985 1036 2.333014 GTCGAGCTTTCTCCAGTTGAG 58.667 52.381 0.00 0.00 42.90 3.02
986 1037 1.074752 CGAGCTTTCTCCAGTTGAGC 58.925 55.000 0.00 0.00 41.18 4.26
987 1038 1.337635 CGAGCTTTCTCCAGTTGAGCT 60.338 52.381 0.00 0.00 45.63 4.09
988 1039 2.777094 GAGCTTTCTCCAGTTGAGCTT 58.223 47.619 0.00 0.00 43.22 3.74
989 1040 2.483491 GAGCTTTCTCCAGTTGAGCTTG 59.517 50.000 0.00 0.00 43.22 4.01
990 1041 2.105477 AGCTTTCTCCAGTTGAGCTTGA 59.895 45.455 0.00 0.00 40.55 3.02
991 1042 2.880890 GCTTTCTCCAGTTGAGCTTGAA 59.119 45.455 0.00 0.00 41.18 2.69
1196 1585 2.622436 GTGGCTCACTCGCTAATTTCT 58.378 47.619 0.00 0.00 0.00 2.52
1208 1597 5.451908 TCGCTAATTTCTTGTTCTTTGCAG 58.548 37.500 0.00 0.00 0.00 4.41
1621 3905 2.831597 GGTACGCACCACTACAACC 58.168 57.895 0.00 0.00 45.04 3.77
1623 3907 0.319405 GTACGCACCACTACAACCCT 59.681 55.000 0.00 0.00 0.00 4.34
1628 3912 2.181975 GCACCACTACAACCCTACCTA 58.818 52.381 0.00 0.00 0.00 3.08
1629 3913 2.093816 GCACCACTACAACCCTACCTAC 60.094 54.545 0.00 0.00 0.00 3.18
1630 3914 2.498885 CACCACTACAACCCTACCTACC 59.501 54.545 0.00 0.00 0.00 3.18
1635 3919 1.652947 ACAACCCTACCTACCACCAG 58.347 55.000 0.00 0.00 0.00 4.00
1644 3928 1.207791 CCTACCACCAGCTCCTCAAT 58.792 55.000 0.00 0.00 0.00 2.57
1729 4019 2.785679 CGATTCAGCGGTCCATTTTTC 58.214 47.619 0.00 0.00 0.00 2.29
1730 4020 2.420022 CGATTCAGCGGTCCATTTTTCT 59.580 45.455 0.00 0.00 0.00 2.52
1731 4021 3.119849 CGATTCAGCGGTCCATTTTTCTT 60.120 43.478 0.00 0.00 0.00 2.52
1836 4153 1.065928 CGTCCGTGGCTAAGCTAGG 59.934 63.158 0.00 0.00 0.00 3.02
1871 4192 0.884259 CGTGTTCACATGGCCAGACA 60.884 55.000 13.05 8.04 0.00 3.41
1947 4268 4.794278 TGTTAATTCGCTGGAGAGTACA 57.206 40.909 0.00 0.00 0.00 2.90
1948 4269 4.491676 TGTTAATTCGCTGGAGAGTACAC 58.508 43.478 0.00 0.00 0.00 2.90
1949 4270 2.674796 AATTCGCTGGAGAGTACACC 57.325 50.000 0.00 0.00 0.00 4.16
1950 4271 1.853963 ATTCGCTGGAGAGTACACCT 58.146 50.000 0.00 0.00 0.00 4.00
1981 4333 6.147164 CCTCACGTGACACATAAATTAGTTGT 59.853 38.462 15.76 0.00 0.00 3.32
1985 4337 6.862608 ACGTGACACATAAATTAGTTGTCGTA 59.137 34.615 6.37 0.00 0.00 3.43
1987 4339 7.148934 CGTGACACATAAATTAGTTGTCGTACA 60.149 37.037 6.37 0.00 0.00 2.90
1992 4344 6.529125 ACATAAATTAGTTGTCGTACAGGTCG 59.471 38.462 0.00 0.00 0.00 4.79
2015 4368 1.821332 CCTGCTCCCATTTCTCGCC 60.821 63.158 0.00 0.00 0.00 5.54
2020 4373 0.727398 CTCCCATTTCTCGCCGAAAC 59.273 55.000 2.50 0.00 43.90 2.78
2034 4387 0.729140 CGAAACCCGCAGAAATGTGC 60.729 55.000 0.00 0.00 40.29 4.57
2035 4388 0.313672 GAAACCCGCAGAAATGTGCA 59.686 50.000 3.36 0.00 44.21 4.57
2044 4397 0.723414 AGAAATGTGCACGCAGATCG 59.277 50.000 13.13 0.00 45.38 3.69
2070 4423 0.606401 GTTGCTAGGCCTTGTGCTGA 60.606 55.000 12.58 4.25 40.92 4.26
2072 4425 0.107508 TGCTAGGCCTTGTGCTGATC 60.108 55.000 12.58 0.00 40.92 2.92
2087 4505 2.362397 GCTGATCTGATCTAACCCGTGA 59.638 50.000 17.82 0.00 0.00 4.35
2092 4510 2.202703 ATCTAACCCGTGACGCGC 60.203 61.111 5.73 0.00 39.71 6.86
2100 4518 3.541831 CGTGACGCGCGCTGTAAT 61.542 61.111 32.58 9.39 0.00 1.89
2279 4729 4.218635 CCTCTCCTATCGCTGCAGTTATTA 59.781 45.833 16.64 1.91 0.00 0.98
2280 4730 5.122512 TCTCCTATCGCTGCAGTTATTAC 57.877 43.478 16.64 0.00 0.00 1.89
2281 4731 4.022242 TCTCCTATCGCTGCAGTTATTACC 60.022 45.833 16.64 0.00 0.00 2.85
2282 4732 3.639561 TCCTATCGCTGCAGTTATTACCA 59.360 43.478 16.64 0.00 0.00 3.25
2283 4733 3.741344 CCTATCGCTGCAGTTATTACCAC 59.259 47.826 16.64 0.00 0.00 4.16
2285 4735 2.343101 TCGCTGCAGTTATTACCACAC 58.657 47.619 16.64 0.00 0.00 3.82
2286 4736 2.028476 TCGCTGCAGTTATTACCACACT 60.028 45.455 16.64 0.00 0.00 3.55
2287 4737 2.742053 CGCTGCAGTTATTACCACACTT 59.258 45.455 16.64 0.00 0.00 3.16
2288 4738 3.424829 CGCTGCAGTTATTACCACACTTG 60.425 47.826 16.64 0.00 0.00 3.16
2289 4739 3.502211 GCTGCAGTTATTACCACACTTGT 59.498 43.478 16.64 0.00 0.00 3.16
2290 4740 4.023193 GCTGCAGTTATTACCACACTTGTT 60.023 41.667 16.64 0.00 0.00 2.83
2291 4741 5.682943 TGCAGTTATTACCACACTTGTTC 57.317 39.130 0.00 0.00 0.00 3.18
2293 4743 4.760204 GCAGTTATTACCACACTTGTTCCT 59.240 41.667 0.00 0.00 0.00 3.36
2294 4744 5.106673 GCAGTTATTACCACACTTGTTCCTC 60.107 44.000 0.00 0.00 0.00 3.71
2296 4746 2.536761 TTACCACACTTGTTCCTCCG 57.463 50.000 0.00 0.00 0.00 4.63
2297 4747 1.707106 TACCACACTTGTTCCTCCGA 58.293 50.000 0.00 0.00 0.00 4.55
2299 4749 1.002087 ACCACACTTGTTCCTCCGATC 59.998 52.381 0.00 0.00 0.00 3.69
2301 4751 2.289694 CCACACTTGTTCCTCCGATCTT 60.290 50.000 0.00 0.00 0.00 2.40
2303 4753 2.289694 ACACTTGTTCCTCCGATCTTGG 60.290 50.000 0.00 0.00 0.00 3.61
2306 4756 0.911769 TGTTCCTCCGATCTTGGCAT 59.088 50.000 0.00 0.00 0.00 4.40
2307 4757 1.281867 TGTTCCTCCGATCTTGGCATT 59.718 47.619 0.00 0.00 0.00 3.56
2308 4758 2.503765 TGTTCCTCCGATCTTGGCATTA 59.496 45.455 0.00 0.00 0.00 1.90
2309 4759 3.136443 TGTTCCTCCGATCTTGGCATTAT 59.864 43.478 0.00 0.00 0.00 1.28
2310 4760 4.137543 GTTCCTCCGATCTTGGCATTATT 58.862 43.478 0.00 0.00 0.00 1.40
2326 4776 4.557301 GCATTATTTTTCCTGTCCGTTTCG 59.443 41.667 0.00 0.00 0.00 3.46
2510 4963 6.809196 GCTAGTATGAGATTATTTCCTCGGTG 59.191 42.308 0.00 0.00 32.30 4.94
2541 4995 6.436261 ACCGATAGTATAACGACATGACAAG 58.564 40.000 0.00 0.00 39.36 3.16
2555 5009 0.036875 GACAAGAACTGGGACCTGGG 59.963 60.000 0.00 0.00 0.00 4.45
2556 5010 1.303643 CAAGAACTGGGACCTGGGC 60.304 63.158 0.00 0.00 0.00 5.36
2557 5011 2.539081 AAGAACTGGGACCTGGGCC 61.539 63.158 11.22 11.22 0.00 5.80
2622 5082 0.684535 CCCCGGGCAAAAGACAAAAT 59.315 50.000 17.73 0.00 0.00 1.82
2666 5128 0.539051 CCCAGAGCCCACTTGTCTAG 59.461 60.000 0.00 0.00 0.00 2.43
2677 5139 6.948309 AGCCCACTTGTCTAGAAAACAAATAT 59.052 34.615 0.00 0.00 36.27 1.28
2727 5189 8.785329 ATTCTCCTCTAAGAAACATGAAAGAC 57.215 34.615 0.00 0.00 38.69 3.01
2738 5200 3.500343 ACATGAAAGACTTTTCCCCCTG 58.500 45.455 0.00 0.00 41.62 4.45
2745 5207 6.841755 TGAAAGACTTTTCCCCCTGAATAAAA 59.158 34.615 1.12 0.00 41.62 1.52
2751 5213 5.738619 TTTCCCCCTGAATAAAAAGAAGC 57.261 39.130 0.00 0.00 31.67 3.86
2771 5236 7.820648 AGAAGCACTAACATAATTTGAACAGG 58.179 34.615 0.00 0.00 0.00 4.00
2792 5257 6.183361 ACAGGCAATTTAATCTTGTTGGGAAA 60.183 34.615 0.00 0.00 0.00 3.13
2824 5289 5.652014 CAGGATTAAAGTTGGGCATACTTGA 59.348 40.000 4.53 0.00 36.06 3.02
2840 5307 6.512415 GCATACTTGAGTACCATCAAAGATGC 60.512 42.308 18.14 18.14 43.14 3.91
3025 5493 8.331740 TCTCAAAAGGATATTTTGTCTCCATCT 58.668 33.333 11.58 0.00 39.62 2.90
3030 5498 8.517062 AAGGATATTTTGTCTCCATCTGAAAG 57.483 34.615 0.00 0.00 0.00 2.62
3036 5504 7.510549 TTTTGTCTCCATCTGAAAGGTAAAG 57.489 36.000 0.31 0.00 0.00 1.85
3088 5556 1.259609 TGCTGGATTTCAAAGCCCAG 58.740 50.000 14.18 14.18 46.67 4.45
3097 5565 3.557228 TTCAAAGCCCAGCAATTGTTT 57.443 38.095 7.40 0.00 32.32 2.83
3155 5623 6.691388 CCTCTTATAAATGTGCCTTTTTACGC 59.309 38.462 0.00 0.00 0.00 4.42
3171 5639 7.201670 CCTTTTTACGCCCTACCTATTACTTTG 60.202 40.741 0.00 0.00 0.00 2.77
3172 5640 6.543430 TTTACGCCCTACCTATTACTTTGA 57.457 37.500 0.00 0.00 0.00 2.69
3173 5641 4.667519 ACGCCCTACCTATTACTTTGAG 57.332 45.455 0.00 0.00 0.00 3.02
3174 5642 4.028825 ACGCCCTACCTATTACTTTGAGT 58.971 43.478 0.00 0.00 0.00 3.41
3175 5643 5.203528 ACGCCCTACCTATTACTTTGAGTA 58.796 41.667 0.00 0.00 0.00 2.59
3193 5661 3.698040 GAGTACTAATTCTCCGTCACCCA 59.302 47.826 0.00 0.00 0.00 4.51
3203 5671 1.671054 CGTCACCCATCACCACCAC 60.671 63.158 0.00 0.00 0.00 4.16
3355 5824 3.596214 ACCTATTACTTTGAGCACGTGG 58.404 45.455 18.88 1.25 0.00 4.94
3389 5858 5.844301 ATGCACGCCTTAAATTCAAAAAG 57.156 34.783 0.00 0.00 0.00 2.27
3394 5863 6.845782 GCACGCCTTAAATTCAAAAAGAAAAG 59.154 34.615 0.00 0.00 40.22 2.27
3395 5864 7.254286 GCACGCCTTAAATTCAAAAAGAAAAGA 60.254 33.333 0.00 0.00 40.22 2.52
3396 5865 8.599774 CACGCCTTAAATTCAAAAAGAAAAGAA 58.400 29.630 0.00 0.00 40.22 2.52
3397 5866 9.157104 ACGCCTTAAATTCAAAAAGAAAAGAAA 57.843 25.926 0.00 0.00 40.22 2.52
3454 5923 7.122799 GGACAGGGAGTTTATAAGCTCAAATTT 59.877 37.037 25.06 9.53 37.92 1.82
3462 5931 8.251026 AGTTTATAAGCTCAAATTTACCCTTGC 58.749 33.333 0.00 0.00 0.00 4.01
3530 6000 5.456548 TGTTGAACGTTCTACATACCTGA 57.543 39.130 32.14 14.73 37.86 3.86
3698 6171 6.166982 GCACAGGAAGAGAACTAAGTAATGT 58.833 40.000 0.00 0.00 0.00 2.71
3781 6258 6.674694 TCGAGACTAGGACATTGTTAGTAC 57.325 41.667 1.98 0.00 0.00 2.73
3844 6321 8.828688 TGATGAAATTAACATGCATTTTGTGA 57.171 26.923 8.36 0.00 0.00 3.58
4016 6496 0.249447 CGACGCAATGCCTCTCCATA 60.249 55.000 0.00 0.00 0.00 2.74
4035 6515 5.304101 TCCATAGCAACAAACCAAGAAACAT 59.696 36.000 0.00 0.00 0.00 2.71
4108 8156 1.195448 CAGAACTACAACGCCAAGCTG 59.805 52.381 0.00 0.00 0.00 4.24
4723 9023 2.493973 CCCAGAGCGAGCTGACTC 59.506 66.667 0.84 0.00 38.14 3.36
4780 9114 1.328279 CTTTTCGGGCCAGTTTTCCT 58.672 50.000 4.39 0.00 0.00 3.36
4861 9195 2.254152 AGTGAGGCAGGTCTGGAATA 57.746 50.000 0.00 0.00 0.00 1.75
4862 9196 2.114616 AGTGAGGCAGGTCTGGAATAG 58.885 52.381 0.00 0.00 0.00 1.73
4863 9197 1.139853 GTGAGGCAGGTCTGGAATAGG 59.860 57.143 0.00 0.00 0.00 2.57
4864 9198 1.273838 TGAGGCAGGTCTGGAATAGGT 60.274 52.381 0.00 0.00 0.00 3.08
4865 9199 2.023404 TGAGGCAGGTCTGGAATAGGTA 60.023 50.000 0.00 0.00 0.00 3.08
4866 9200 2.630580 GAGGCAGGTCTGGAATAGGTAG 59.369 54.545 0.00 0.00 0.00 3.18
4867 9201 1.694696 GGCAGGTCTGGAATAGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
4868 9202 1.694696 GCAGGTCTGGAATAGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
4869 9203 2.693074 GCAGGTCTGGAATAGGTAGGGA 60.693 54.545 0.00 0.00 0.00 4.20
4870 9204 3.235200 CAGGTCTGGAATAGGTAGGGAG 58.765 54.545 0.00 0.00 0.00 4.30
4871 9205 3.117093 CAGGTCTGGAATAGGTAGGGAGA 60.117 52.174 0.00 0.00 0.00 3.71
4872 9206 3.117054 AGGTCTGGAATAGGTAGGGAGAC 60.117 52.174 0.00 0.00 0.00 3.36
4873 9207 2.885894 GTCTGGAATAGGTAGGGAGACG 59.114 54.545 0.00 0.00 0.00 4.18
4874 9208 2.781757 TCTGGAATAGGTAGGGAGACGA 59.218 50.000 0.00 0.00 0.00 4.20
4875 9209 3.398292 TCTGGAATAGGTAGGGAGACGAT 59.602 47.826 0.00 0.00 0.00 3.73
4876 9210 4.140994 TCTGGAATAGGTAGGGAGACGATT 60.141 45.833 0.00 0.00 0.00 3.34
4877 9211 4.150359 TGGAATAGGTAGGGAGACGATTC 58.850 47.826 0.00 0.00 0.00 2.52
4878 9212 4.150359 GGAATAGGTAGGGAGACGATTCA 58.850 47.826 0.00 0.00 29.93 2.57
4897 9231 6.034256 CGATTCAAAGATGGAGAAAATGTTGC 59.966 38.462 0.00 0.00 0.00 4.17
4939 9273 2.433604 AGAATCCAGCATCGACATGTCT 59.566 45.455 22.95 2.85 31.86 3.41
4956 9290 8.060679 CGACATGTCTTATCTCATTTCATCAAC 58.939 37.037 22.95 0.00 0.00 3.18
4967 9333 6.481976 TCTCATTTCATCAACTTAACACACGT 59.518 34.615 0.00 0.00 0.00 4.49
5084 9453 6.536941 TCATTGTACCAAAGCAAACCTTTTTC 59.463 34.615 0.00 0.00 41.75 2.29
5121 9490 9.860898 TCTTTCTTTCTTTCTTTCCTTTTTCAG 57.139 29.630 0.00 0.00 0.00 3.02
5122 9491 8.479313 TTTCTTTCTTTCTTTCCTTTTTCAGC 57.521 30.769 0.00 0.00 0.00 4.26
5215 9587 2.550208 GGAGGTCTGAACGGAAACATGT 60.550 50.000 0.00 0.00 0.00 3.21
5218 9590 4.253685 AGGTCTGAACGGAAACATGTATG 58.746 43.478 0.00 0.00 0.00 2.39
5219 9591 4.000988 GGTCTGAACGGAAACATGTATGT 58.999 43.478 0.00 0.00 44.20 2.29
5220 9592 5.046878 AGGTCTGAACGGAAACATGTATGTA 60.047 40.000 0.00 0.00 40.80 2.29
5249 9621 3.367395 GCTCCCTGCTGGTTGAATTTAAC 60.367 47.826 9.00 4.57 38.95 2.01
5302 9674 2.501316 AGGCTTTGGGAATGTTTATGGC 59.499 45.455 0.00 0.00 0.00 4.40
5303 9675 2.501316 GGCTTTGGGAATGTTTATGGCT 59.499 45.455 0.00 0.00 0.00 4.75
5308 9680 3.554934 TGGGAATGTTTATGGCTAGCTG 58.445 45.455 15.72 0.00 0.00 4.24
5331 9703 7.067008 GCTGGTGTATATCCAAACAATGTACTT 59.933 37.037 0.00 0.00 34.35 2.24
5341 9713 9.855021 ATCCAAACAATGTACTTTTATTACAGC 57.145 29.630 0.00 0.00 33.01 4.40
5342 9714 8.851145 TCCAAACAATGTACTTTTATTACAGCA 58.149 29.630 0.00 0.00 33.01 4.41
5343 9715 9.638239 CCAAACAATGTACTTTTATTACAGCAT 57.362 29.630 0.00 0.00 33.01 3.79
5347 9719 8.893727 ACAATGTACTTTTATTACAGCATCTCC 58.106 33.333 0.00 0.00 33.01 3.71
5348 9720 8.892723 CAATGTACTTTTATTACAGCATCTCCA 58.107 33.333 0.00 0.00 33.01 3.86
5349 9721 9.461312 AATGTACTTTTATTACAGCATCTCCAA 57.539 29.630 0.00 0.00 33.01 3.53
5350 9722 8.263940 TGTACTTTTATTACAGCATCTCCAAC 57.736 34.615 0.00 0.00 0.00 3.77
5351 9723 7.880713 TGTACTTTTATTACAGCATCTCCAACA 59.119 33.333 0.00 0.00 0.00 3.33
5352 9724 7.383102 ACTTTTATTACAGCATCTCCAACAG 57.617 36.000 0.00 0.00 0.00 3.16
5353 9725 5.818136 TTTATTACAGCATCTCCAACAGC 57.182 39.130 0.00 0.00 0.00 4.40
5354 9726 2.113860 TTACAGCATCTCCAACAGCC 57.886 50.000 0.00 0.00 0.00 4.85
5355 9727 0.983467 TACAGCATCTCCAACAGCCA 59.017 50.000 0.00 0.00 0.00 4.75
5356 9728 0.607489 ACAGCATCTCCAACAGCCAC 60.607 55.000 0.00 0.00 0.00 5.01
5357 9729 1.376424 AGCATCTCCAACAGCCACG 60.376 57.895 0.00 0.00 0.00 4.94
5358 9730 1.672356 GCATCTCCAACAGCCACGT 60.672 57.895 0.00 0.00 0.00 4.49
5359 9731 1.237285 GCATCTCCAACAGCCACGTT 61.237 55.000 0.00 0.00 0.00 3.99
5363 9735 4.380531 CATCTCCAACAGCCACGTTATAT 58.619 43.478 0.00 0.00 0.00 0.86
5365 9737 5.601583 TCTCCAACAGCCACGTTATATAA 57.398 39.130 0.00 0.00 0.00 0.98
5371 9743 0.437295 GCCACGTTATATAAGCGCCG 59.563 55.000 2.29 0.00 0.00 6.46
5373 9745 1.133407 CACGTTATATAAGCGCCGCA 58.867 50.000 13.36 0.00 0.00 5.69
5376 9748 0.437295 GTTATATAAGCGCCGCACCG 59.563 55.000 13.36 0.00 0.00 4.94
5378 9750 0.314618 TATATAAGCGCCGCACCGAA 59.685 50.000 13.36 0.00 0.00 4.30
5381 9753 1.579084 ATAAGCGCCGCACCGAAAAA 61.579 50.000 13.36 0.00 0.00 1.94
5384 9756 2.558821 CGCCGCACCGAAAAATCA 59.441 55.556 0.00 0.00 0.00 2.57
5386 9758 1.579429 GCCGCACCGAAAAATCAGT 59.421 52.632 0.00 0.00 0.00 3.41
5391 9763 3.112580 CGCACCGAAAAATCAGTGTTTT 58.887 40.909 0.00 0.00 32.94 2.43
5406 9778 4.735620 TTTTTGCACGCGCTATCG 57.264 50.000 5.73 0.00 39.64 2.92
5409 9781 0.236187 TTTTGCACGCGCTATCGTTT 59.764 45.000 5.73 0.00 41.21 3.60
5410 9782 0.179235 TTTGCACGCGCTATCGTTTC 60.179 50.000 5.73 0.00 41.21 2.78
5411 9783 2.055095 GCACGCGCTATCGTTTCG 60.055 61.111 5.73 0.00 41.21 3.46
5412 9784 2.613486 CACGCGCTATCGTTTCGG 59.387 61.111 5.73 0.00 41.21 4.30
5413 9785 2.581409 ACGCGCTATCGTTTCGGG 60.581 61.111 5.73 0.00 40.07 5.14
5415 9787 2.856346 CGCGCTATCGTTTCGGGTG 61.856 63.158 5.56 0.00 38.14 4.61
5418 9790 1.480219 CGCTATCGTTTCGGGTGCTC 61.480 60.000 0.00 0.00 0.00 4.26
5420 9792 0.174845 CTATCGTTTCGGGTGCTCCA 59.825 55.000 7.20 0.00 34.36 3.86
5422 9794 3.423154 CGTTTCGGGTGCTCCAGC 61.423 66.667 7.20 0.00 42.50 4.85
5423 9795 3.423154 GTTTCGGGTGCTCCAGCG 61.423 66.667 7.20 2.10 45.83 5.18
5425 9797 3.589654 TTTCGGGTGCTCCAGCGAG 62.590 63.158 7.20 0.00 45.83 5.03
5429 9801 4.479993 GGTGCTCCAGCGAGGCAT 62.480 66.667 0.00 0.00 45.83 4.40
5430 9802 2.501128 GTGCTCCAGCGAGGCATA 59.499 61.111 0.00 0.00 45.83 3.14
5432 9804 0.948141 GTGCTCCAGCGAGGCATATC 60.948 60.000 0.00 0.00 45.83 1.63
5433 9805 1.117749 TGCTCCAGCGAGGCATATCT 61.118 55.000 0.00 0.00 45.83 1.98
5434 9806 0.891373 GCTCCAGCGAGGCATATCTA 59.109 55.000 0.00 0.00 36.55 1.98
5435 9807 1.135141 GCTCCAGCGAGGCATATCTAG 60.135 57.143 0.00 0.00 36.55 2.43
5436 9808 2.166829 CTCCAGCGAGGCATATCTAGT 58.833 52.381 0.00 0.00 37.29 2.57
5437 9809 2.560542 CTCCAGCGAGGCATATCTAGTT 59.439 50.000 0.00 0.00 37.29 2.24
5438 9810 2.558795 TCCAGCGAGGCATATCTAGTTC 59.441 50.000 0.00 0.00 37.29 3.01
5440 9812 3.573598 CAGCGAGGCATATCTAGTTCAG 58.426 50.000 0.00 0.00 0.00 3.02
5442 9814 2.590073 CGAGGCATATCTAGTTCAGCG 58.410 52.381 0.00 0.00 0.00 5.18
5443 9815 2.333014 GAGGCATATCTAGTTCAGCGC 58.667 52.381 0.00 0.00 0.00 5.92
5444 9816 1.063806 GGCATATCTAGTTCAGCGCG 58.936 55.000 0.00 0.00 0.00 6.86
5445 9817 0.436531 GCATATCTAGTTCAGCGCGC 59.563 55.000 26.66 26.66 0.00 6.86
5446 9818 1.932604 GCATATCTAGTTCAGCGCGCT 60.933 52.381 31.32 31.32 0.00 5.92
5447 9819 1.718178 CATATCTAGTTCAGCGCGCTG 59.282 52.381 46.54 46.54 44.86 5.18
5481 9853 3.691356 GCGCCGCTTGTTTGTTGC 61.691 61.111 0.00 0.00 0.00 4.17
5485 9857 3.029735 CGCTTGTTTGTTGCGCCC 61.030 61.111 4.18 0.00 43.08 6.13
5486 9858 3.029735 GCTTGTTTGTTGCGCCCG 61.030 61.111 4.18 0.00 0.00 6.13
5487 9859 3.029735 CTTGTTTGTTGCGCCCGC 61.030 61.111 4.18 5.60 42.35 6.13
5488 9860 3.483235 CTTGTTTGTTGCGCCCGCT 62.483 57.895 14.13 0.00 42.51 5.52
5489 9861 3.477224 TTGTTTGTTGCGCCCGCTC 62.477 57.895 14.13 7.68 42.51 5.03
5490 9862 4.700365 GTTTGTTGCGCCCGCTCC 62.700 66.667 14.13 4.89 42.51 4.70
5508 9880 3.877357 CGCGCGCTGGAGTCTCTA 61.877 66.667 30.48 0.00 0.00 2.43
5509 9881 2.025441 GCGCGCTGGAGTCTCTAG 59.975 66.667 26.67 8.82 0.00 2.43
5510 9882 2.025441 CGCGCTGGAGTCTCTAGC 59.975 66.667 24.35 24.35 45.96 3.42
5516 9888 0.380378 CTGGAGTCTCTAGCACTCGC 59.620 60.000 12.87 8.41 41.20 5.03
5527 9899 2.049156 CACTCGCTCGCAACTCCA 60.049 61.111 0.00 0.00 0.00 3.86
5528 9900 2.049063 ACTCGCTCGCAACTCCAC 60.049 61.111 0.00 0.00 0.00 4.02
5529 9901 2.811317 CTCGCTCGCAACTCCACC 60.811 66.667 0.00 0.00 0.00 4.61
5530 9902 3.288308 CTCGCTCGCAACTCCACCT 62.288 63.158 0.00 0.00 0.00 4.00
5532 9904 1.805945 CGCTCGCAACTCCACCTAC 60.806 63.158 0.00 0.00 0.00 3.18
5533 9905 1.448013 GCTCGCAACTCCACCTACC 60.448 63.158 0.00 0.00 0.00 3.18
5536 9908 0.907704 TCGCAACTCCACCTACCCAT 60.908 55.000 0.00 0.00 0.00 4.00
5537 9909 0.462047 CGCAACTCCACCTACCCATC 60.462 60.000 0.00 0.00 0.00 3.51
5540 9912 1.210478 CAACTCCACCTACCCATCCAG 59.790 57.143 0.00 0.00 0.00 3.86
5541 9913 0.983378 ACTCCACCTACCCATCCAGC 60.983 60.000 0.00 0.00 0.00 4.85
5542 9914 1.692749 TCCACCTACCCATCCAGCC 60.693 63.158 0.00 0.00 0.00 4.85
5544 9916 3.480133 ACCTACCCATCCAGCCGC 61.480 66.667 0.00 0.00 0.00 6.53
5545 9917 4.609018 CCTACCCATCCAGCCGCG 62.609 72.222 0.00 0.00 0.00 6.46
5600 10297 4.315941 CGCTTCCCCGGCCTATCC 62.316 72.222 0.00 0.00 0.00 2.59
5601 10298 3.955044 GCTTCCCCGGCCTATCCC 61.955 72.222 0.00 0.00 0.00 3.85
5609 10306 4.564110 GGCCTATCCCCGCACCAC 62.564 72.222 0.00 0.00 0.00 4.16
5610 10307 4.910585 GCCTATCCCCGCACCACG 62.911 72.222 0.00 0.00 43.15 4.94
5620 10317 4.643387 GCACCACGGTGGCTTCCT 62.643 66.667 26.62 4.09 42.67 3.36
5630 10327 3.403558 GGCTTCCTCCGCCTCCTT 61.404 66.667 0.00 0.00 44.17 3.36
5631 10328 2.188207 GCTTCCTCCGCCTCCTTC 59.812 66.667 0.00 0.00 0.00 3.46
5632 10329 2.363172 GCTTCCTCCGCCTCCTTCT 61.363 63.158 0.00 0.00 0.00 2.85
5634 10331 1.036707 CTTCCTCCGCCTCCTTCTAG 58.963 60.000 0.00 0.00 0.00 2.43
5636 10333 0.106619 TCCTCCGCCTCCTTCTAGTC 60.107 60.000 0.00 0.00 0.00 2.59
5638 10335 0.741915 CTCCGCCTCCTTCTAGTCAC 59.258 60.000 0.00 0.00 0.00 3.67
5640 10337 1.433879 CGCCTCCTTCTAGTCACCG 59.566 63.158 0.00 0.00 0.00 4.94
5641 10338 1.142097 GCCTCCTTCTAGTCACCGC 59.858 63.158 0.00 0.00 0.00 5.68
5642 10339 1.817209 CCTCCTTCTAGTCACCGCC 59.183 63.158 0.00 0.00 0.00 6.13
5643 10340 1.433879 CTCCTTCTAGTCACCGCCG 59.566 63.158 0.00 0.00 0.00 6.46
5644 10341 2.202756 CCTTCTAGTCACCGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
5646 10343 3.718210 CTTCTAGTCACCGCCGCCC 62.718 68.421 0.00 0.00 0.00 6.13
5664 10361 3.991051 CTCGCACGTGGTGGTCCT 61.991 66.667 18.88 0.00 33.64 3.85
5665 10362 3.916392 CTCGCACGTGGTGGTCCTC 62.916 68.421 18.88 0.00 33.64 3.71
5668 10365 3.299977 CACGTGGTGGTCCTCCGA 61.300 66.667 7.95 0.00 36.30 4.55
5669 10366 3.300765 ACGTGGTGGTCCTCCGAC 61.301 66.667 5.51 4.45 38.38 4.79
5670 10367 4.415332 CGTGGTGGTCCTCCGACG 62.415 72.222 15.61 15.61 40.17 5.12
5671 10368 2.987547 GTGGTGGTCCTCCGACGA 60.988 66.667 5.51 0.00 40.17 4.20
5672 10369 2.203523 TGGTGGTCCTCCGACGAA 60.204 61.111 5.51 0.00 40.17 3.85
5673 10370 2.260743 GGTGGTCCTCCGACGAAC 59.739 66.667 0.00 0.00 40.17 3.95
5674 10371 2.567497 GGTGGTCCTCCGACGAACA 61.567 63.158 0.00 0.00 40.17 3.18
5676 10373 1.228337 TGGTCCTCCGACGAACAGA 60.228 57.895 0.00 0.00 40.17 3.41
5677 10374 1.241990 TGGTCCTCCGACGAACAGAG 61.242 60.000 0.00 0.00 40.17 3.35
5678 10375 1.153997 GTCCTCCGACGAACAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
5680 10377 2.561885 CTCCGACGAACAGAGCGT 59.438 61.111 0.00 0.00 45.79 5.07
5681 10378 1.797933 CTCCGACGAACAGAGCGTG 60.798 63.158 0.00 0.00 42.77 5.34
5682 10379 2.805353 CCGACGAACAGAGCGTGG 60.805 66.667 0.00 0.00 42.77 4.94
5683 10380 3.470567 CGACGAACAGAGCGTGGC 61.471 66.667 0.00 0.00 42.77 5.01
5684 10381 3.112709 GACGAACAGAGCGTGGCC 61.113 66.667 0.00 0.00 42.77 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.819259 CCATCACCGCAATGGGTAGG 60.819 60.000 0.00 0.00 44.64 3.18
1 2 0.107214 ACCATCACCGCAATGGGTAG 60.107 55.000 11.97 0.00 46.65 3.18
2 3 0.329931 AACCATCACCGCAATGGGTA 59.670 50.000 11.97 0.00 42.50 3.69
3 4 1.076549 AACCATCACCGCAATGGGT 59.923 52.632 11.97 4.26 46.65 4.51
4 5 0.680921 AGAACCATCACCGCAATGGG 60.681 55.000 11.97 0.00 46.65 4.00
6 7 1.811965 TGAAGAACCATCACCGCAATG 59.188 47.619 0.00 0.00 0.00 2.82
7 8 2.198827 TGAAGAACCATCACCGCAAT 57.801 45.000 0.00 0.00 0.00 3.56
8 9 1.974265 TTGAAGAACCATCACCGCAA 58.026 45.000 0.00 0.00 0.00 4.85
9 10 1.606668 GTTTGAAGAACCATCACCGCA 59.393 47.619 0.00 0.00 0.00 5.69
10 11 1.399727 CGTTTGAAGAACCATCACCGC 60.400 52.381 0.00 0.00 0.00 5.68
11 12 1.196808 CCGTTTGAAGAACCATCACCG 59.803 52.381 0.00 0.00 0.00 4.94
12 13 2.500229 TCCGTTTGAAGAACCATCACC 58.500 47.619 0.00 0.00 0.00 4.02
13 14 4.003648 AGATCCGTTTGAAGAACCATCAC 58.996 43.478 0.00 0.00 0.00 3.06
14 15 4.286297 AGATCCGTTTGAAGAACCATCA 57.714 40.909 0.00 0.00 0.00 3.07
15 16 4.455877 ACAAGATCCGTTTGAAGAACCATC 59.544 41.667 0.56 0.00 0.00 3.51
16 17 4.398319 ACAAGATCCGTTTGAAGAACCAT 58.602 39.130 0.56 0.00 0.00 3.55
17 18 3.815809 ACAAGATCCGTTTGAAGAACCA 58.184 40.909 0.56 0.00 0.00 3.67
18 19 4.274950 TGAACAAGATCCGTTTGAAGAACC 59.725 41.667 0.56 0.00 0.00 3.62
19 20 5.418310 TGAACAAGATCCGTTTGAAGAAC 57.582 39.130 0.56 0.00 0.00 3.01
61 63 2.047655 TTCTACCCGTGCTTGGCG 60.048 61.111 0.00 0.00 0.00 5.69
79 81 3.181487 ACCTGCACATGTTTTTCAGTCAC 60.181 43.478 0.00 0.00 0.00 3.67
81 83 3.632189 GACCTGCACATGTTTTTCAGTC 58.368 45.455 0.00 0.00 0.00 3.51
82 84 2.033299 CGACCTGCACATGTTTTTCAGT 59.967 45.455 0.00 0.00 0.00 3.41
83 85 2.653890 CGACCTGCACATGTTTTTCAG 58.346 47.619 0.00 1.47 0.00 3.02
84 86 1.268999 GCGACCTGCACATGTTTTTCA 60.269 47.619 0.00 0.00 45.45 2.69
196 206 1.071699 GGATACTCCAAGCGGCCATTA 59.928 52.381 2.24 0.00 36.28 1.90
197 207 0.179018 GGATACTCCAAGCGGCCATT 60.179 55.000 2.24 0.00 36.28 3.16
198 208 1.344953 TGGATACTCCAAGCGGCCAT 61.345 55.000 2.24 0.00 45.00 4.40
213 223 2.363406 GCAAAGGCTGGGCTGGAT 60.363 61.111 3.62 0.00 36.96 3.41
245 256 2.690735 CGACATCTACACGACTACACG 58.309 52.381 0.00 0.00 39.31 4.49
325 339 2.813908 GAGAATTCGCCGCCGTGT 60.814 61.111 0.00 0.00 35.54 4.49
415 434 4.796231 GTCTGCCGGACGTGCGAT 62.796 66.667 31.64 0.00 35.07 4.58
449 478 2.376518 TCTTGGGGAGAAGCTGACAAAT 59.623 45.455 0.00 0.00 0.00 2.32
539 568 4.506255 CCATCAAGGACCGCCCCC 62.506 72.222 0.00 0.00 41.22 5.40
634 666 6.909895 TGTGTAAGTGTGTTTTGATTCGATTG 59.090 34.615 0.00 0.00 0.00 2.67
642 674 6.986904 TGTATGTGTGTAAGTGTGTTTTGA 57.013 33.333 0.00 0.00 0.00 2.69
652 684 5.230097 CGTGTCAGCTATGTATGTGTGTAAG 59.770 44.000 0.00 0.00 0.00 2.34
653 685 5.099575 CGTGTCAGCTATGTATGTGTGTAA 58.900 41.667 0.00 0.00 0.00 2.41
658 690 2.473816 CCCGTGTCAGCTATGTATGTG 58.526 52.381 0.00 0.00 0.00 3.21
659 691 1.412710 CCCCGTGTCAGCTATGTATGT 59.587 52.381 0.00 0.00 0.00 2.29
661 693 0.393077 GCCCCGTGTCAGCTATGTAT 59.607 55.000 0.00 0.00 0.00 2.29
697 735 2.065899 TGGCAGTGTTAAAAGGTGCT 57.934 45.000 0.00 0.00 34.46 4.40
767 805 1.980772 GGAAGACCCGACCTTCCGA 60.981 63.158 12.39 0.00 46.88 4.55
817 856 1.516821 CGTCTGCTCTGCTCTGCTC 60.517 63.158 0.00 0.00 0.00 4.26
818 857 2.572812 CGTCTGCTCTGCTCTGCT 59.427 61.111 0.00 0.00 0.00 4.24
819 858 3.187414 GCGTCTGCTCTGCTCTGC 61.187 66.667 0.00 0.00 38.39 4.26
820 859 2.879933 CGCGTCTGCTCTGCTCTG 60.880 66.667 0.00 0.00 39.65 3.35
821 860 4.792648 GCGCGTCTGCTCTGCTCT 62.793 66.667 8.43 0.00 39.65 4.09
897 943 1.763545 TCGAGAGAGACTGCTAGGCTA 59.236 52.381 0.00 0.00 30.20 3.93
985 1036 4.600286 TCCCCATGGAAGCTCTTCAAGC 62.600 54.545 15.22 0.00 43.33 4.01
986 1037 1.283029 TCCCCATGGAAGCTCTTCAAG 59.717 52.381 15.22 0.00 41.20 3.02
987 1038 1.371467 TCCCCATGGAAGCTCTTCAA 58.629 50.000 15.22 0.65 41.20 2.69
988 1039 1.371467 TTCCCCATGGAAGCTCTTCA 58.629 50.000 15.22 0.00 45.88 3.02
1026 1077 3.644399 GACGGCCTCCACTTCGTCC 62.644 68.421 0.00 0.00 44.02 4.79
1028 1079 2.436087 CTTGACGGCCTCCACTTCGT 62.436 60.000 0.00 0.00 38.62 3.85
1196 1585 0.953727 ATCGCTGCTGCAAAGAACAA 59.046 45.000 16.29 0.00 39.64 2.83
1616 3900 1.652947 CTGGTGGTAGGTAGGGTTGT 58.347 55.000 0.00 0.00 0.00 3.32
1619 3903 0.325390 GAGCTGGTGGTAGGTAGGGT 60.325 60.000 0.00 0.00 0.00 4.34
1621 3905 0.032017 AGGAGCTGGTGGTAGGTAGG 60.032 60.000 0.00 0.00 0.00 3.18
1623 3907 0.708209 TGAGGAGCTGGTGGTAGGTA 59.292 55.000 0.00 0.00 0.00 3.08
1628 3912 0.326264 GTGATTGAGGAGCTGGTGGT 59.674 55.000 0.00 0.00 0.00 4.16
1629 3913 0.325933 TGTGATTGAGGAGCTGGTGG 59.674 55.000 0.00 0.00 0.00 4.61
1630 3914 2.286872 GATGTGATTGAGGAGCTGGTG 58.713 52.381 0.00 0.00 0.00 4.17
1635 3919 2.141517 CGATGGATGTGATTGAGGAGC 58.858 52.381 0.00 0.00 0.00 4.70
1644 3928 0.394080 TGCAATGGCGATGGATGTGA 60.394 50.000 0.00 0.00 45.35 3.58
1729 4019 0.527565 CTGGGCCGGATTGTCAAAAG 59.472 55.000 6.48 0.00 0.00 2.27
1730 4020 0.111446 TCTGGGCCGGATTGTCAAAA 59.889 50.000 12.08 0.00 0.00 2.44
1731 4021 0.111446 TTCTGGGCCGGATTGTCAAA 59.889 50.000 17.51 0.00 0.00 2.69
1854 4171 0.473755 ACTGTCTGGCCATGTGAACA 59.526 50.000 5.51 5.40 0.00 3.18
1912 4233 8.773136 CAGCGAATTAACAACTTCGTTTTATAC 58.227 33.333 9.85 0.00 44.54 1.47
1914 4235 6.799925 CCAGCGAATTAACAACTTCGTTTTAT 59.200 34.615 9.85 0.00 44.54 1.40
1916 4237 4.973663 CCAGCGAATTAACAACTTCGTTTT 59.026 37.500 9.85 0.00 44.54 2.43
1917 4238 4.273969 TCCAGCGAATTAACAACTTCGTTT 59.726 37.500 9.85 0.00 44.54 3.60
1918 4239 3.810941 TCCAGCGAATTAACAACTTCGTT 59.189 39.130 9.85 2.46 44.54 3.85
1981 4333 1.303888 AGGAAGCCGACCTGTACGA 60.304 57.895 0.00 0.00 36.30 3.43
2015 4368 0.729140 GCACATTTCTGCGGGTTTCG 60.729 55.000 0.00 0.00 42.76 3.46
2020 4373 2.176546 CGTGCACATTTCTGCGGG 59.823 61.111 18.64 0.00 40.31 6.13
2048 4401 1.589716 GCACAAGGCCTAGCAACAGG 61.590 60.000 5.16 0.00 38.86 4.00
2070 4423 1.067212 GCGTCACGGGTTAGATCAGAT 59.933 52.381 0.00 0.00 0.00 2.90
2072 4425 0.866061 CGCGTCACGGGTTAGATCAG 60.866 60.000 6.01 0.00 38.44 2.90
2279 4729 1.002087 GATCGGAGGAACAAGTGTGGT 59.998 52.381 0.00 0.00 0.00 4.16
2280 4730 1.276421 AGATCGGAGGAACAAGTGTGG 59.724 52.381 0.00 0.00 0.00 4.17
2281 4731 2.738846 CAAGATCGGAGGAACAAGTGTG 59.261 50.000 0.00 0.00 0.00 3.82
2282 4732 2.289694 CCAAGATCGGAGGAACAAGTGT 60.290 50.000 0.00 0.00 0.00 3.55
2283 4733 2.350522 CCAAGATCGGAGGAACAAGTG 58.649 52.381 0.00 0.00 0.00 3.16
2285 4735 1.339055 TGCCAAGATCGGAGGAACAAG 60.339 52.381 5.46 0.00 0.00 3.16
2286 4736 0.690192 TGCCAAGATCGGAGGAACAA 59.310 50.000 5.46 0.00 0.00 2.83
2287 4737 0.911769 ATGCCAAGATCGGAGGAACA 59.088 50.000 5.46 0.00 0.00 3.18
2288 4738 2.044123 AATGCCAAGATCGGAGGAAC 57.956 50.000 5.46 0.00 0.00 3.62
2289 4739 4.437682 AATAATGCCAAGATCGGAGGAA 57.562 40.909 5.46 0.00 0.00 3.36
2290 4740 4.437682 AAATAATGCCAAGATCGGAGGA 57.562 40.909 5.46 0.00 0.00 3.71
2291 4741 5.507985 GGAAAAATAATGCCAAGATCGGAGG 60.508 44.000 0.00 0.00 0.00 4.30
2293 4743 5.067674 CAGGAAAAATAATGCCAAGATCGGA 59.932 40.000 0.00 0.00 0.00 4.55
2294 4744 5.163519 ACAGGAAAAATAATGCCAAGATCGG 60.164 40.000 0.00 0.00 0.00 4.18
2296 4746 6.276091 GGACAGGAAAAATAATGCCAAGATC 58.724 40.000 0.00 0.00 0.00 2.75
2297 4747 5.163519 CGGACAGGAAAAATAATGCCAAGAT 60.164 40.000 0.00 0.00 0.00 2.40
2299 4749 4.082245 ACGGACAGGAAAAATAATGCCAAG 60.082 41.667 0.00 0.00 0.00 3.61
2301 4751 3.426615 ACGGACAGGAAAAATAATGCCA 58.573 40.909 0.00 0.00 0.00 4.92
2303 4753 4.557301 CGAAACGGACAGGAAAAATAATGC 59.443 41.667 0.00 0.00 0.00 3.56
2306 4756 3.816523 AGCGAAACGGACAGGAAAAATAA 59.183 39.130 0.00 0.00 0.00 1.40
2307 4757 3.187637 CAGCGAAACGGACAGGAAAAATA 59.812 43.478 0.00 0.00 0.00 1.40
2308 4758 2.031157 CAGCGAAACGGACAGGAAAAAT 60.031 45.455 0.00 0.00 0.00 1.82
2309 4759 1.332375 CAGCGAAACGGACAGGAAAAA 59.668 47.619 0.00 0.00 0.00 1.94
2310 4760 0.941542 CAGCGAAACGGACAGGAAAA 59.058 50.000 0.00 0.00 0.00 2.29
2326 4776 1.598130 AGACGGGTGAAGTTGCAGC 60.598 57.895 0.00 0.00 35.63 5.25
2510 4963 3.054878 CGTTATACTATCGGTTGGCACC 58.945 50.000 0.00 0.00 40.16 5.01
2541 4995 4.410400 CGGCCCAGGTCCCAGTTC 62.410 72.222 0.00 0.00 0.00 3.01
2557 5011 3.576356 GACCGGGTCATGCATGCG 61.576 66.667 22.25 18.45 32.09 4.73
2622 5082 2.524951 GATACAAACCGGACGGCCCA 62.525 60.000 9.46 0.00 39.32 5.36
2701 5163 9.225436 GTCTTTCATGTTTCTTAGAGGAGAATT 57.775 33.333 0.00 0.00 35.70 2.17
2702 5164 8.601546 AGTCTTTCATGTTTCTTAGAGGAGAAT 58.398 33.333 0.00 0.00 35.70 2.40
2704 5166 7.546250 AGTCTTTCATGTTTCTTAGAGGAGA 57.454 36.000 0.00 0.00 0.00 3.71
2706 5168 8.980481 AAAAGTCTTTCATGTTTCTTAGAGGA 57.020 30.769 0.00 0.00 0.00 3.71
2707 5169 8.293157 GGAAAAGTCTTTCATGTTTCTTAGAGG 58.707 37.037 0.00 0.00 42.44 3.69
2708 5170 8.293157 GGGAAAAGTCTTTCATGTTTCTTAGAG 58.707 37.037 0.00 0.00 42.44 2.43
2709 5171 7.230712 GGGGAAAAGTCTTTCATGTTTCTTAGA 59.769 37.037 0.00 0.00 42.44 2.10
2710 5172 7.371159 GGGGAAAAGTCTTTCATGTTTCTTAG 58.629 38.462 0.00 0.00 42.44 2.18
2727 5189 6.166279 GCTTCTTTTTATTCAGGGGGAAAAG 58.834 40.000 0.00 0.00 39.39 2.27
2745 5207 8.299570 CCTGTTCAAATTATGTTAGTGCTTCTT 58.700 33.333 0.00 0.00 0.00 2.52
2751 5213 8.761575 AATTGCCTGTTCAAATTATGTTAGTG 57.238 30.769 0.00 0.00 0.00 2.74
2792 5257 7.740805 TGCCCAACTTTAATCCTGTTTTAAAT 58.259 30.769 0.00 0.00 30.48 1.40
2815 5280 6.512415 GCATCTTTGATGGTACTCAAGTATGC 60.512 42.308 19.32 19.32 41.95 3.14
2824 5289 3.055819 ACGTGAGCATCTTTGATGGTACT 60.056 43.478 11.48 0.15 34.92 2.73
2840 5307 7.009440 CACACAATATCACAAGTAAACGTGAG 58.991 38.462 3.01 0.00 44.83 3.51
2933 5400 3.868757 AGCGTGCTTGTAACTCATAGA 57.131 42.857 0.00 0.00 0.00 1.98
2998 5466 7.928307 TGGAGACAAAATATCCTTTTGAGAG 57.072 36.000 15.22 0.00 39.69 3.20
3025 5493 2.883888 GCCTGGCCATCTTTACCTTTCA 60.884 50.000 5.51 0.00 0.00 2.69
3067 5535 2.235402 CTGGGCTTTGAAATCCAGCAAT 59.765 45.455 12.33 0.00 40.04 3.56
3171 5639 3.698040 TGGGTGACGGAGAATTAGTACTC 59.302 47.826 0.00 0.00 0.00 2.59
3172 5640 3.705051 TGGGTGACGGAGAATTAGTACT 58.295 45.455 0.00 0.00 0.00 2.73
3173 5641 4.098960 TGATGGGTGACGGAGAATTAGTAC 59.901 45.833 0.00 0.00 0.00 2.73
3174 5642 4.098960 GTGATGGGTGACGGAGAATTAGTA 59.901 45.833 0.00 0.00 0.00 1.82
3175 5643 3.104512 TGATGGGTGACGGAGAATTAGT 58.895 45.455 0.00 0.00 0.00 2.24
3203 5671 0.113776 TGGTAGGATAGGGGCTACCG 59.886 60.000 0.00 0.00 46.96 4.02
3267 5736 4.812476 CGGATCGCACGGCCTTCA 62.812 66.667 0.00 0.00 0.00 3.02
3396 5865 4.041075 ACCCATTTTAAGGCGTGGATTTTT 59.959 37.500 0.00 0.00 33.53 1.94
3397 5866 3.580895 ACCCATTTTAAGGCGTGGATTTT 59.419 39.130 0.00 0.00 33.53 1.82
3454 5923 3.267483 GACTTTATTGCTCGCAAGGGTA 58.733 45.455 10.33 0.00 42.80 3.69
3624 6095 3.314357 GTGGTGGTCTAGGAAAAACACAC 59.686 47.826 0.37 0.00 0.00 3.82
3664 6137 1.266718 TCTTCCTGTGCGCAATTGTTC 59.733 47.619 14.00 0.00 0.00 3.18
3667 6140 1.159285 TCTCTTCCTGTGCGCAATTG 58.841 50.000 14.00 4.95 0.00 2.32
3793 6270 6.600032 TCTTGGTTTAGTGTGCTTCAACTAAA 59.400 34.615 4.36 4.36 32.70 1.85
3844 6321 0.254178 ACAGATCCGCCTTCTGCAAT 59.746 50.000 7.22 0.00 43.57 3.56
3999 6479 0.533755 GCTATGGAGAGGCATTGCGT 60.534 55.000 3.02 3.02 0.00 5.24
4000 6480 0.533531 TGCTATGGAGAGGCATTGCG 60.534 55.000 1.91 0.00 33.48 4.85
4001 6481 1.336125 GTTGCTATGGAGAGGCATTGC 59.664 52.381 0.00 0.00 35.84 3.56
4016 6496 3.380004 TCGATGTTTCTTGGTTTGTTGCT 59.620 39.130 0.00 0.00 0.00 3.91
4035 6515 3.827551 TTCGCGCGTGGAACTTCGA 62.828 57.895 30.98 8.54 33.40 3.71
4696 8996 2.512515 GCTCTGGGCCATCGTCAC 60.513 66.667 6.72 0.00 34.27 3.67
4723 9023 4.576053 AGATCAACGAGAGAGATCTCAGTG 59.424 45.833 24.39 12.99 45.79 3.66
4769 9103 1.341209 CCCAAGACAAGGAAAACTGGC 59.659 52.381 0.00 0.00 0.00 4.85
4780 9114 0.401738 CCAGGAGAAGCCCAAGACAA 59.598 55.000 0.00 0.00 37.37 3.18
4826 9160 3.291585 CTCACTTTGCACATCGTTGAAC 58.708 45.455 0.00 0.00 0.00 3.18
4861 9195 3.709587 TCTTTGAATCGTCTCCCTACCT 58.290 45.455 0.00 0.00 0.00 3.08
4862 9196 4.372656 CATCTTTGAATCGTCTCCCTACC 58.627 47.826 0.00 0.00 0.00 3.18
4863 9197 4.099573 TCCATCTTTGAATCGTCTCCCTAC 59.900 45.833 0.00 0.00 0.00 3.18
4864 9198 4.286707 TCCATCTTTGAATCGTCTCCCTA 58.713 43.478 0.00 0.00 0.00 3.53
4865 9199 3.107601 TCCATCTTTGAATCGTCTCCCT 58.892 45.455 0.00 0.00 0.00 4.20
4866 9200 3.133003 TCTCCATCTTTGAATCGTCTCCC 59.867 47.826 0.00 0.00 0.00 4.30
4867 9201 4.392921 TCTCCATCTTTGAATCGTCTCC 57.607 45.455 0.00 0.00 0.00 3.71
4868 9202 6.727824 TTTTCTCCATCTTTGAATCGTCTC 57.272 37.500 0.00 0.00 0.00 3.36
4869 9203 6.656693 ACATTTTCTCCATCTTTGAATCGTCT 59.343 34.615 0.00 0.00 0.00 4.18
4870 9204 6.846350 ACATTTTCTCCATCTTTGAATCGTC 58.154 36.000 0.00 0.00 0.00 4.20
4871 9205 6.824305 ACATTTTCTCCATCTTTGAATCGT 57.176 33.333 0.00 0.00 0.00 3.73
4872 9206 6.034256 GCAACATTTTCTCCATCTTTGAATCG 59.966 38.462 0.00 0.00 0.00 3.34
4873 9207 6.869913 TGCAACATTTTCTCCATCTTTGAATC 59.130 34.615 0.00 0.00 0.00 2.52
4874 9208 6.761312 TGCAACATTTTCTCCATCTTTGAAT 58.239 32.000 0.00 0.00 0.00 2.57
4875 9209 6.040729 TCTGCAACATTTTCTCCATCTTTGAA 59.959 34.615 0.00 0.00 0.00 2.69
4876 9210 5.535783 TCTGCAACATTTTCTCCATCTTTGA 59.464 36.000 0.00 0.00 0.00 2.69
4877 9211 5.775686 TCTGCAACATTTTCTCCATCTTTG 58.224 37.500 0.00 0.00 0.00 2.77
4878 9212 5.771666 TCTCTGCAACATTTTCTCCATCTTT 59.228 36.000 0.00 0.00 0.00 2.52
4897 9231 1.138661 GGATCAGAACTGGGCTCTCTG 59.861 57.143 0.00 0.00 38.34 3.35
4967 9333 5.515797 AGAGCAATTAGTAGACGCATGTA 57.484 39.130 0.00 0.00 0.00 2.29
5106 9475 9.793259 TCTAAGATAAGCTGAAAAAGGAAAGAA 57.207 29.630 0.00 0.00 0.00 2.52
5107 9476 9.965902 ATCTAAGATAAGCTGAAAAAGGAAAGA 57.034 29.630 0.00 0.00 0.00 2.52
5175 9544 5.056480 CCTCCGCATCATGTAATCTACAAA 58.944 41.667 0.00 0.00 42.76 2.83
5193 9564 0.032952 TGTTTCCGTTCAGACCTCCG 59.967 55.000 0.00 0.00 0.00 4.63
5238 9610 7.698836 ACTGTGCATTCAAGTTAAATTCAAC 57.301 32.000 0.00 0.00 0.00 3.18
5302 9674 6.767902 ACATTGTTTGGATATACACCAGCTAG 59.232 38.462 0.00 0.00 38.70 3.42
5303 9675 6.658849 ACATTGTTTGGATATACACCAGCTA 58.341 36.000 0.00 0.00 38.70 3.32
5331 9703 4.640201 GGCTGTTGGAGATGCTGTAATAAA 59.360 41.667 0.00 0.00 0.00 1.40
5339 9711 1.376424 CGTGGCTGTTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
5340 9712 1.237285 AACGTGGCTGTTGGAGATGC 61.237 55.000 0.00 0.00 0.00 3.91
5341 9713 2.093306 TAACGTGGCTGTTGGAGATG 57.907 50.000 0.00 0.00 33.32 2.90
5342 9714 4.689612 ATATAACGTGGCTGTTGGAGAT 57.310 40.909 0.00 0.00 33.32 2.75
5343 9715 5.597806 CTTATATAACGTGGCTGTTGGAGA 58.402 41.667 0.00 0.00 33.32 3.71
5344 9716 4.211374 GCTTATATAACGTGGCTGTTGGAG 59.789 45.833 0.00 0.00 33.32 3.86
5345 9717 4.124238 GCTTATATAACGTGGCTGTTGGA 58.876 43.478 0.00 0.00 33.32 3.53
5346 9718 3.059868 CGCTTATATAACGTGGCTGTTGG 60.060 47.826 0.00 0.00 33.32 3.77
5347 9719 3.603857 GCGCTTATATAACGTGGCTGTTG 60.604 47.826 0.00 0.00 33.32 3.33
5348 9720 2.542595 GCGCTTATATAACGTGGCTGTT 59.457 45.455 0.00 1.60 35.86 3.16
5349 9721 2.132762 GCGCTTATATAACGTGGCTGT 58.867 47.619 0.00 0.00 0.00 4.40
5350 9722 1.459592 GGCGCTTATATAACGTGGCTG 59.540 52.381 7.64 7.67 0.00 4.85
5351 9723 1.792006 GGCGCTTATATAACGTGGCT 58.208 50.000 7.64 0.00 0.00 4.75
5352 9724 0.437295 CGGCGCTTATATAACGTGGC 59.563 55.000 7.64 15.62 0.00 5.01
5353 9725 0.437295 GCGGCGCTTATATAACGTGG 59.563 55.000 26.86 10.02 0.00 4.94
5354 9726 1.133407 TGCGGCGCTTATATAACGTG 58.867 50.000 33.26 8.98 0.00 4.49
5355 9727 1.134226 GTGCGGCGCTTATATAACGT 58.866 50.000 33.26 0.00 0.00 3.99
5356 9728 0.437295 GGTGCGGCGCTTATATAACG 59.563 55.000 33.26 0.00 0.00 3.18
5357 9729 0.437295 CGGTGCGGCGCTTATATAAC 59.563 55.000 33.26 19.88 0.00 1.89
5358 9730 0.314618 TCGGTGCGGCGCTTATATAA 59.685 50.000 33.26 7.71 0.00 0.98
5359 9731 0.314618 TTCGGTGCGGCGCTTATATA 59.685 50.000 33.26 8.58 0.00 0.86
5363 9735 1.579084 ATTTTTCGGTGCGGCGCTTA 61.579 50.000 33.26 11.23 0.00 3.09
5365 9737 3.322706 GATTTTTCGGTGCGGCGCT 62.323 57.895 33.26 9.08 0.00 5.92
5391 9763 0.179235 GAAACGATAGCGCGTGCAAA 60.179 50.000 24.79 11.32 44.86 3.68
5399 9771 1.480219 GAGCACCCGAAACGATAGCG 61.480 60.000 0.00 0.00 44.79 4.26
5400 9772 1.152383 GGAGCACCCGAAACGATAGC 61.152 60.000 0.00 0.00 42.67 2.97
5401 9773 0.174845 TGGAGCACCCGAAACGATAG 59.825 55.000 0.00 0.00 37.93 2.08
5404 9776 2.342279 CTGGAGCACCCGAAACGA 59.658 61.111 0.00 0.00 37.93 3.85
5406 9778 3.423154 CGCTGGAGCACCCGAAAC 61.423 66.667 0.00 0.00 42.21 2.78
5412 9784 2.388890 ATATGCCTCGCTGGAGCACC 62.389 60.000 0.00 0.00 42.21 5.01
5413 9785 0.948141 GATATGCCTCGCTGGAGCAC 60.948 60.000 0.00 0.00 42.21 4.40
5415 9787 0.891373 TAGATATGCCTCGCTGGAGC 59.109 55.000 0.00 0.00 39.06 4.70
5418 9790 2.297315 TGAACTAGATATGCCTCGCTGG 59.703 50.000 0.00 0.00 39.35 4.85
5420 9792 2.029470 GCTGAACTAGATATGCCTCGCT 60.029 50.000 0.00 0.00 0.00 4.93
5422 9794 2.590073 CGCTGAACTAGATATGCCTCG 58.410 52.381 0.00 0.00 0.00 4.63
5423 9795 2.333014 GCGCTGAACTAGATATGCCTC 58.667 52.381 0.00 0.00 0.00 4.70
5425 9797 1.063806 CGCGCTGAACTAGATATGCC 58.936 55.000 5.56 0.00 0.00 4.40
5426 9798 0.436531 GCGCGCTGAACTAGATATGC 59.563 55.000 26.67 0.00 0.00 3.14
5463 9835 3.385999 CAACAAACAAGCGGCGCG 61.386 61.111 27.59 16.07 0.00 6.86
5464 9836 3.691356 GCAACAAACAAGCGGCGC 61.691 61.111 26.86 26.86 0.00 6.53
5469 9841 3.029735 CGGGCGCAACAAACAAGC 61.030 61.111 10.83 0.00 0.00 4.01
5470 9842 3.029735 GCGGGCGCAACAAACAAG 61.030 61.111 10.83 0.00 41.49 3.16
5471 9843 3.477224 GAGCGGGCGCAACAAACAA 62.477 57.895 10.83 0.00 44.88 2.83
5472 9844 3.959975 GAGCGGGCGCAACAAACA 61.960 61.111 10.83 0.00 44.88 2.83
5473 9845 4.700365 GGAGCGGGCGCAACAAAC 62.700 66.667 10.83 0.00 44.88 2.93
5492 9864 2.025441 CTAGAGACTCCAGCGCGC 59.975 66.667 26.66 26.66 0.00 6.86
5493 9865 2.025441 GCTAGAGACTCCAGCGCG 59.975 66.667 7.15 0.00 0.00 6.86
5494 9866 1.226831 GTGCTAGAGACTCCAGCGC 60.227 63.158 18.46 18.46 38.15 5.92
5495 9867 0.380378 GAGTGCTAGAGACTCCAGCG 59.620 60.000 16.57 0.00 38.15 5.18
5496 9868 0.380378 CGAGTGCTAGAGACTCCAGC 59.620 60.000 15.12 15.12 37.18 4.85
5497 9869 0.380378 GCGAGTGCTAGAGACTCCAG 59.620 60.000 13.82 0.00 37.18 3.86
5498 9870 2.483441 GCGAGTGCTAGAGACTCCA 58.517 57.895 13.82 0.00 37.18 3.86
5509 9881 3.482783 GGAGTTGCGAGCGAGTGC 61.483 66.667 0.00 0.00 43.24 4.40
5510 9882 2.049156 TGGAGTTGCGAGCGAGTG 60.049 61.111 0.00 0.00 0.00 3.51
5511 9883 2.049063 GTGGAGTTGCGAGCGAGT 60.049 61.111 0.00 0.00 0.00 4.18
5512 9884 1.934220 TAGGTGGAGTTGCGAGCGAG 61.934 60.000 0.00 0.00 0.00 5.03
5514 9886 1.805945 GTAGGTGGAGTTGCGAGCG 60.806 63.158 0.00 0.00 0.00 5.03
5515 9887 1.448013 GGTAGGTGGAGTTGCGAGC 60.448 63.158 0.00 0.00 0.00 5.03
5516 9888 1.218316 GGGTAGGTGGAGTTGCGAG 59.782 63.158 0.00 0.00 0.00 5.03
5518 9890 0.462047 GATGGGTAGGTGGAGTTGCG 60.462 60.000 0.00 0.00 0.00 4.85
5521 9893 1.584724 CTGGATGGGTAGGTGGAGTT 58.415 55.000 0.00 0.00 0.00 3.01
5522 9894 0.983378 GCTGGATGGGTAGGTGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
5523 9895 1.700042 GGCTGGATGGGTAGGTGGAG 61.700 65.000 0.00 0.00 0.00 3.86
5524 9896 1.692749 GGCTGGATGGGTAGGTGGA 60.693 63.158 0.00 0.00 0.00 4.02
5525 9897 2.919043 GGCTGGATGGGTAGGTGG 59.081 66.667 0.00 0.00 0.00 4.61
5527 9899 3.480133 GCGGCTGGATGGGTAGGT 61.480 66.667 0.00 0.00 0.00 3.08
5528 9900 4.609018 CGCGGCTGGATGGGTAGG 62.609 72.222 0.00 0.00 0.00 3.18
5593 10290 4.910585 CGTGGTGCGGGGATAGGC 62.911 72.222 0.00 0.00 36.85 3.93
5603 10300 4.643387 AGGAAGCCACCGTGGTGC 62.643 66.667 18.95 9.11 44.16 5.01
5616 10313 0.335361 ACTAGAAGGAGGCGGAGGAA 59.665 55.000 0.00 0.00 0.00 3.36
5620 10317 0.683504 GGTGACTAGAAGGAGGCGGA 60.684 60.000 0.00 0.00 0.00 5.54
5625 10322 1.433879 CGGCGGTGACTAGAAGGAG 59.566 63.158 0.00 0.00 0.00 3.69
5626 10323 2.707849 GCGGCGGTGACTAGAAGGA 61.708 63.158 9.78 0.00 0.00 3.36
5627 10324 2.202756 GCGGCGGTGACTAGAAGG 60.203 66.667 9.78 0.00 0.00 3.46
5628 10325 2.202756 GGCGGCGGTGACTAGAAG 60.203 66.667 9.78 0.00 0.00 2.85
5629 10326 3.766691 GGGCGGCGGTGACTAGAA 61.767 66.667 9.78 0.00 0.00 2.10
5648 10345 3.986006 GAGGACCACCACGTGCGA 61.986 66.667 10.91 0.00 38.94 5.10
5651 10348 3.299977 TCGGAGGACCACCACGTG 61.300 66.667 9.08 9.08 38.95 4.49
5652 10349 3.300765 GTCGGAGGACCACCACGT 61.301 66.667 8.82 0.00 38.95 4.49
5654 10351 2.567497 TTCGTCGGAGGACCACCAC 61.567 63.158 8.82 4.89 40.17 4.16
5655 10352 2.203523 TTCGTCGGAGGACCACCA 60.204 61.111 8.82 0.00 40.17 4.17
5657 10354 1.080705 CTGTTCGTCGGAGGACCAC 60.081 63.158 0.00 0.00 40.17 4.16
5658 10355 1.228337 TCTGTTCGTCGGAGGACCA 60.228 57.895 0.00 0.00 40.17 4.02
5664 10361 2.254350 CACGCTCTGTTCGTCGGA 59.746 61.111 0.00 0.00 38.19 4.55
5665 10362 2.805353 CCACGCTCTGTTCGTCGG 60.805 66.667 0.00 0.00 38.19 4.79
5666 10363 3.470567 GCCACGCTCTGTTCGTCG 61.471 66.667 0.00 0.00 38.19 5.12
5667 10364 3.112709 GGCCACGCTCTGTTCGTC 61.113 66.667 0.00 0.00 38.19 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.