Multiple sequence alignment - TraesCS2D01G401100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G401100 chr2D 100.000 3405 0 0 1 3405 515830114 515826710 0.000000e+00 6288.0
1 TraesCS2D01G401100 chr2D 91.429 175 14 1 547 720 56540984 56541158 4.390000e-59 239.0
2 TraesCS2D01G401100 chr2D 83.843 229 33 1 336 560 551888608 551888836 7.400000e-52 215.0
3 TraesCS2D01G401100 chr2D 97.059 34 0 1 2993 3026 2543539 2543507 4.750000e-04 56.5
4 TraesCS2D01G401100 chr2B 93.040 2112 87 26 757 2841 607248306 607246228 0.000000e+00 3031.0
5 TraesCS2D01G401100 chr2B 94.144 222 11 1 3184 3405 607245709 607245490 1.510000e-88 337.0
6 TraesCS2D01G401100 chr2B 94.643 168 8 1 3026 3192 607246014 607245847 3.370000e-65 259.0
7 TraesCS2D01G401100 chr2B 86.026 229 28 1 336 560 632921161 632921389 3.390000e-60 243.0
8 TraesCS2D01G401100 chr2B 89.167 120 10 3 2840 2958 607246146 607246029 2.740000e-31 147.0
9 TraesCS2D01G401100 chr2A 94.102 1916 71 18 753 2643 659651775 659649877 0.000000e+00 2874.0
10 TraesCS2D01G401100 chr2A 90.476 378 23 4 3029 3405 659649585 659649220 1.420000e-133 486.0
11 TraesCS2D01G401100 chr2A 86.957 276 22 4 2672 2940 659649885 659649617 7.140000e-77 298.0
12 TraesCS2D01G401100 chr2A 84.677 248 32 3 317 559 554518504 554518258 3.390000e-60 243.0
13 TraesCS2D01G401100 chr2A 80.451 266 35 7 311 559 176862184 176862449 1.610000e-43 187.0
14 TraesCS2D01G401100 chr2A 78.000 250 38 6 317 550 703282752 703283000 1.270000e-29 141.0
15 TraesCS2D01G401100 chr2A 100.000 30 0 0 283 312 659652109 659652080 4.750000e-04 56.5
16 TraesCS2D01G401100 chr5D 85.223 291 31 8 4 287 328575495 328575210 4.300000e-74 289.0
17 TraesCS2D01G401100 chr5D 83.849 291 40 4 1 285 564837001 564837290 1.560000e-68 270.0
18 TraesCS2D01G401100 chr5D 93.413 167 10 1 554 719 296949523 296949357 2.620000e-61 246.0
19 TraesCS2D01G401100 chr5D 83.212 274 36 6 4 270 395694023 395693753 3.390000e-60 243.0
20 TraesCS2D01G401100 chr7D 83.618 293 40 4 3 288 91779079 91778788 5.600000e-68 268.0
21 TraesCS2D01G401100 chr3A 82.392 301 43 6 4 297 724385143 724384846 1.570000e-63 254.0
22 TraesCS2D01G401100 chr4D 92.982 171 11 1 557 726 230542712 230542542 7.300000e-62 248.0
23 TraesCS2D01G401100 chr4D 91.111 180 13 3 557 734 58643756 58643934 1.220000e-59 241.0
24 TraesCS2D01G401100 chr7B 82.215 298 42 7 1 288 28489431 28489135 2.620000e-61 246.0
25 TraesCS2D01G401100 chr7B 81.250 304 45 9 4 297 35636433 35636132 5.680000e-58 235.0
26 TraesCS2D01G401100 chr6D 93.413 167 10 1 553 718 311580700 311580534 2.620000e-61 246.0
27 TraesCS2D01G401100 chr6D 82.578 287 36 9 4 277 341997852 341997567 1.220000e-59 241.0
28 TraesCS2D01G401100 chr6B 92.090 177 10 4 558 731 699977610 699977435 2.620000e-61 246.0
29 TraesCS2D01G401100 chr1D 82.313 294 42 7 4 288 487617907 487617615 2.620000e-61 246.0
30 TraesCS2D01G401100 chr1D 83.550 231 31 2 336 559 109807990 109807760 3.440000e-50 209.0
31 TraesCS2D01G401100 chr4B 90.761 184 15 2 550 731 75205101 75205284 9.440000e-61 244.0
32 TraesCS2D01G401100 chr3D 91.429 175 14 1 549 722 507038751 507038577 4.390000e-59 239.0
33 TraesCS2D01G401100 chr3B 89.305 187 17 3 557 742 183601248 183601064 7.350000e-57 231.0
34 TraesCS2D01G401100 chr4A 84.348 230 31 2 336 560 546123812 546123583 1.590000e-53 220.0
35 TraesCS2D01G401100 chr4A 83.406 229 34 1 336 560 58521780 58522008 3.440000e-50 209.0
36 TraesCS2D01G401100 chr7A 84.071 226 32 2 339 560 241725184 241724959 7.400000e-52 215.0
37 TraesCS2D01G401100 chr7A 83.406 229 34 1 336 560 620420403 620420631 3.440000e-50 209.0
38 TraesCS2D01G401100 chr7A 82.171 258 31 7 318 560 595075428 595075685 1.240000e-49 207.0
39 TraesCS2D01G401100 chr7A 80.916 262 32 7 317 560 733238956 733239217 1.250000e-44 191.0
40 TraesCS2D01G401100 chr7A 76.172 256 39 11 317 559 554465535 554465289 7.720000e-22 115.0
41 TraesCS2D01G401100 chr6A 81.961 255 38 6 313 560 498005747 498006000 3.440000e-50 209.0
42 TraesCS2D01G401100 chr5A 76.852 216 34 7 320 522 379276801 379276589 1.290000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G401100 chr2D 515826710 515830114 3404 True 6288.000 6288 100.00000 1 3405 1 chr2D.!!$R2 3404
1 TraesCS2D01G401100 chr2B 607245490 607248306 2816 True 943.500 3031 92.74850 757 3405 4 chr2B.!!$R1 2648
2 TraesCS2D01G401100 chr2A 659649220 659652109 2889 True 928.625 2874 92.88375 283 3405 4 chr2A.!!$R2 3122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.107643 GATCCCCTAGAAGTGCAGGC 59.892 60.0 0.00 0.0 0.00 4.85 F
1088 1342 0.096454 GCGGTTAACGTTCATGGCTC 59.904 55.0 2.82 0.0 46.52 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1758 1.153229 GGCCGCCTTGGTAACCTAG 60.153 63.158 0.71 0.0 41.21 3.02 R
2736 3021 0.604780 GAGAGCAAGTGCAGCAGGAA 60.605 55.000 6.00 0.0 45.16 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.883026 CGAGGATGATCCCCTAGAAGT 58.117 52.381 8.08 0.00 37.19 3.01
21 22 2.560542 CGAGGATGATCCCCTAGAAGTG 59.439 54.545 8.08 0.00 37.19 3.16
22 23 2.301583 GAGGATGATCCCCTAGAAGTGC 59.698 54.545 8.08 0.00 37.19 4.40
23 24 2.050144 GGATGATCCCCTAGAAGTGCA 58.950 52.381 0.00 0.00 0.00 4.57
24 25 2.038295 GGATGATCCCCTAGAAGTGCAG 59.962 54.545 0.00 0.00 0.00 4.41
25 26 1.500474 TGATCCCCTAGAAGTGCAGG 58.500 55.000 0.00 0.00 0.00 4.85
26 27 0.107643 GATCCCCTAGAAGTGCAGGC 59.892 60.000 0.00 0.00 0.00 4.85
27 28 1.348775 ATCCCCTAGAAGTGCAGGCC 61.349 60.000 0.00 0.00 0.00 5.19
28 29 2.187946 CCCTAGAAGTGCAGGCCG 59.812 66.667 0.00 0.00 0.00 6.13
29 30 2.512515 CCTAGAAGTGCAGGCCGC 60.513 66.667 11.92 11.92 42.89 6.53
30 31 2.512515 CTAGAAGTGCAGGCCGCC 60.513 66.667 15.40 0.00 41.33 6.13
31 32 4.451150 TAGAAGTGCAGGCCGCCG 62.451 66.667 15.40 0.00 41.33 6.46
34 35 4.722700 AAGTGCAGGCCGCCGAAT 62.723 61.111 15.40 0.00 41.33 3.34
39 40 2.745884 CAGGCCGCCGAATCACAA 60.746 61.111 3.05 0.00 0.00 3.33
40 41 2.114670 CAGGCCGCCGAATCACAAT 61.115 57.895 3.05 0.00 0.00 2.71
41 42 0.813610 CAGGCCGCCGAATCACAATA 60.814 55.000 3.05 0.00 0.00 1.90
42 43 0.108585 AGGCCGCCGAATCACAATAT 59.891 50.000 3.05 0.00 0.00 1.28
43 44 0.517316 GGCCGCCGAATCACAATATC 59.483 55.000 0.00 0.00 0.00 1.63
44 45 1.512926 GCCGCCGAATCACAATATCT 58.487 50.000 0.00 0.00 0.00 1.98
45 46 1.873591 GCCGCCGAATCACAATATCTT 59.126 47.619 0.00 0.00 0.00 2.40
46 47 2.096218 GCCGCCGAATCACAATATCTTC 60.096 50.000 0.00 0.00 0.00 2.87
47 48 3.130633 CCGCCGAATCACAATATCTTCA 58.869 45.455 0.00 0.00 0.00 3.02
48 49 3.059597 CCGCCGAATCACAATATCTTCAC 60.060 47.826 0.00 0.00 0.00 3.18
49 50 3.059597 CGCCGAATCACAATATCTTCACC 60.060 47.826 0.00 0.00 0.00 4.02
50 51 3.876914 GCCGAATCACAATATCTTCACCA 59.123 43.478 0.00 0.00 0.00 4.17
51 52 4.516698 GCCGAATCACAATATCTTCACCAT 59.483 41.667 0.00 0.00 0.00 3.55
52 53 5.561532 GCCGAATCACAATATCTTCACCATG 60.562 44.000 0.00 0.00 0.00 3.66
53 54 5.049198 CCGAATCACAATATCTTCACCATGG 60.049 44.000 11.19 11.19 0.00 3.66
54 55 5.528690 CGAATCACAATATCTTCACCATGGT 59.471 40.000 13.00 13.00 0.00 3.55
55 56 6.512253 CGAATCACAATATCTTCACCATGGTG 60.512 42.308 35.00 35.00 46.64 4.17
56 57 5.178096 TCACAATATCTTCACCATGGTGT 57.822 39.130 37.49 24.22 45.55 4.16
57 58 5.185454 TCACAATATCTTCACCATGGTGTC 58.815 41.667 37.49 0.00 45.55 3.67
58 59 4.034394 CACAATATCTTCACCATGGTGTCG 59.966 45.833 37.49 29.06 45.55 4.35
59 60 4.081142 ACAATATCTTCACCATGGTGTCGA 60.081 41.667 37.49 32.26 45.55 4.20
60 61 4.963318 ATATCTTCACCATGGTGTCGAT 57.037 40.909 37.49 34.92 45.55 3.59
61 62 2.385013 TCTTCACCATGGTGTCGATG 57.615 50.000 37.49 23.06 45.55 3.84
62 63 1.899142 TCTTCACCATGGTGTCGATGA 59.101 47.619 37.49 24.65 45.55 2.92
63 64 2.301583 TCTTCACCATGGTGTCGATGAA 59.698 45.455 37.49 24.53 45.55 2.57
64 65 2.849294 TCACCATGGTGTCGATGAAA 57.151 45.000 37.49 18.14 45.55 2.69
65 66 2.698803 TCACCATGGTGTCGATGAAAG 58.301 47.619 37.49 14.13 45.55 2.62
66 67 2.301583 TCACCATGGTGTCGATGAAAGA 59.698 45.455 37.49 16.74 45.55 2.52
67 68 3.055167 TCACCATGGTGTCGATGAAAGAT 60.055 43.478 37.49 0.00 45.55 2.40
68 69 3.691118 CACCATGGTGTCGATGAAAGATT 59.309 43.478 32.94 0.00 40.91 2.40
69 70 4.156556 CACCATGGTGTCGATGAAAGATTT 59.843 41.667 32.94 0.00 40.91 2.17
70 71 4.396166 ACCATGGTGTCGATGAAAGATTTC 59.604 41.667 18.99 0.00 37.69 2.17
71 72 8.004854 CACCATGGTGTCGATGAAAGATTTCA 62.005 42.308 32.94 10.23 44.14 2.69
72 73 9.382130 CACCATGGTGTCGATGAAAGATTTCAA 62.382 40.741 32.94 0.00 43.74 2.69
84 85 7.403312 TGAAAGATTTCAACTCCACAAAGAA 57.597 32.000 5.55 0.00 43.62 2.52
85 86 7.257722 TGAAAGATTTCAACTCCACAAAGAAC 58.742 34.615 5.55 0.00 43.62 3.01
86 87 5.774498 AGATTTCAACTCCACAAAGAACC 57.226 39.130 0.00 0.00 0.00 3.62
87 88 5.200483 AGATTTCAACTCCACAAAGAACCA 58.800 37.500 0.00 0.00 0.00 3.67
88 89 5.656416 AGATTTCAACTCCACAAAGAACCAA 59.344 36.000 0.00 0.00 0.00 3.67
89 90 5.730296 TTTCAACTCCACAAAGAACCAAA 57.270 34.783 0.00 0.00 0.00 3.28
90 91 4.712122 TCAACTCCACAAAGAACCAAAC 57.288 40.909 0.00 0.00 0.00 2.93
91 92 3.445805 TCAACTCCACAAAGAACCAAACC 59.554 43.478 0.00 0.00 0.00 3.27
92 93 3.094484 ACTCCACAAAGAACCAAACCA 57.906 42.857 0.00 0.00 0.00 3.67
93 94 3.436243 ACTCCACAAAGAACCAAACCAA 58.564 40.909 0.00 0.00 0.00 3.67
94 95 3.447229 ACTCCACAAAGAACCAAACCAAG 59.553 43.478 0.00 0.00 0.00 3.61
95 96 3.699038 CTCCACAAAGAACCAAACCAAGA 59.301 43.478 0.00 0.00 0.00 3.02
96 97 4.090090 TCCACAAAGAACCAAACCAAGAA 58.910 39.130 0.00 0.00 0.00 2.52
97 98 4.528596 TCCACAAAGAACCAAACCAAGAAA 59.471 37.500 0.00 0.00 0.00 2.52
98 99 5.012148 TCCACAAAGAACCAAACCAAGAAAA 59.988 36.000 0.00 0.00 0.00 2.29
99 100 5.703130 CCACAAAGAACCAAACCAAGAAAAA 59.297 36.000 0.00 0.00 0.00 1.94
121 122 7.589574 AAAAGTTTGACACACCAACATAAAC 57.410 32.000 0.00 0.00 0.00 2.01
122 123 6.524101 AAGTTTGACACACCAACATAAACT 57.476 33.333 0.00 0.00 38.20 2.66
123 124 6.131544 AGTTTGACACACCAACATAAACTC 57.868 37.500 0.00 0.00 33.13 3.01
124 125 5.650266 AGTTTGACACACCAACATAAACTCA 59.350 36.000 0.00 0.00 33.13 3.41
125 126 6.321181 AGTTTGACACACCAACATAAACTCAT 59.679 34.615 0.00 0.00 33.13 2.90
126 127 6.707440 TTGACACACCAACATAAACTCATT 57.293 33.333 0.00 0.00 0.00 2.57
127 128 7.809546 TTGACACACCAACATAAACTCATTA 57.190 32.000 0.00 0.00 0.00 1.90
128 129 7.433708 TGACACACCAACATAAACTCATTAG 57.566 36.000 0.00 0.00 0.00 1.73
129 130 7.220740 TGACACACCAACATAAACTCATTAGA 58.779 34.615 0.00 0.00 0.00 2.10
130 131 7.882791 TGACACACCAACATAAACTCATTAGAT 59.117 33.333 0.00 0.00 0.00 1.98
131 132 8.268850 ACACACCAACATAAACTCATTAGATC 57.731 34.615 0.00 0.00 0.00 2.75
132 133 7.336931 ACACACCAACATAAACTCATTAGATCC 59.663 37.037 0.00 0.00 0.00 3.36
133 134 6.538742 ACACCAACATAAACTCATTAGATCCG 59.461 38.462 0.00 0.00 0.00 4.18
134 135 6.761242 CACCAACATAAACTCATTAGATCCGA 59.239 38.462 0.00 0.00 0.00 4.55
135 136 7.279981 CACCAACATAAACTCATTAGATCCGAA 59.720 37.037 0.00 0.00 0.00 4.30
136 137 7.993183 ACCAACATAAACTCATTAGATCCGAAT 59.007 33.333 0.00 0.00 0.00 3.34
137 138 9.489084 CCAACATAAACTCATTAGATCCGAATA 57.511 33.333 0.00 0.00 0.00 1.75
155 156 5.769367 CGAATAATCGGATCTGTTAGGACA 58.231 41.667 0.42 0.00 45.32 4.02
170 171 6.756221 TGTTAGGACAGAAAACTCTCTAACC 58.244 40.000 0.00 0.00 36.17 2.85
171 172 6.553852 TGTTAGGACAGAAAACTCTCTAACCT 59.446 38.462 0.00 0.00 36.17 3.50
172 173 7.070821 TGTTAGGACAGAAAACTCTCTAACCTT 59.929 37.037 0.00 0.00 36.17 3.50
173 174 8.583296 GTTAGGACAGAAAACTCTCTAACCTTA 58.417 37.037 0.00 0.00 34.31 2.69
174 175 7.800300 AGGACAGAAAACTCTCTAACCTTAT 57.200 36.000 0.00 0.00 30.74 1.73
175 176 7.616313 AGGACAGAAAACTCTCTAACCTTATG 58.384 38.462 0.00 0.00 30.74 1.90
176 177 6.819146 GGACAGAAAACTCTCTAACCTTATGG 59.181 42.308 0.00 0.00 39.83 2.74
177 178 6.174049 ACAGAAAACTCTCTAACCTTATGGC 58.826 40.000 0.00 0.00 36.63 4.40
178 179 6.013293 ACAGAAAACTCTCTAACCTTATGGCT 60.013 38.462 0.00 0.00 36.63 4.75
179 180 6.536941 CAGAAAACTCTCTAACCTTATGGCTC 59.463 42.308 0.00 0.00 36.63 4.70
180 181 6.442244 AGAAAACTCTCTAACCTTATGGCTCT 59.558 38.462 0.00 0.00 36.63 4.09
181 182 5.606348 AACTCTCTAACCTTATGGCTCTG 57.394 43.478 0.00 0.00 36.63 3.35
182 183 3.386402 ACTCTCTAACCTTATGGCTCTGC 59.614 47.826 0.00 0.00 36.63 4.26
227 228 9.731819 TTTATTCTCACACGATAATCACTAGAC 57.268 33.333 0.00 0.00 0.00 2.59
228 229 5.405331 TCTCACACGATAATCACTAGACG 57.595 43.478 0.00 0.00 0.00 4.18
229 230 5.114081 TCTCACACGATAATCACTAGACGA 58.886 41.667 0.00 0.00 0.00 4.20
230 231 5.758784 TCTCACACGATAATCACTAGACGAT 59.241 40.000 0.00 0.00 0.00 3.73
231 232 5.748592 TCACACGATAATCACTAGACGATG 58.251 41.667 0.00 0.00 0.00 3.84
232 233 5.526111 TCACACGATAATCACTAGACGATGA 59.474 40.000 0.00 0.00 0.00 2.92
233 234 5.621634 CACACGATAATCACTAGACGATGAC 59.378 44.000 0.00 0.00 0.00 3.06
234 235 4.841306 CACGATAATCACTAGACGATGACG 59.159 45.833 0.00 7.64 45.75 4.35
235 236 4.083961 ACGATAATCACTAGACGATGACGG 60.084 45.833 0.00 0.00 44.46 4.79
236 237 4.151867 CGATAATCACTAGACGATGACGGA 59.848 45.833 0.00 0.00 44.46 4.69
237 238 3.972950 AATCACTAGACGATGACGGAG 57.027 47.619 0.00 0.00 44.46 4.63
238 239 2.685850 TCACTAGACGATGACGGAGA 57.314 50.000 0.00 0.00 44.46 3.71
239 240 2.981898 TCACTAGACGATGACGGAGAA 58.018 47.619 0.00 0.00 44.46 2.87
240 241 3.542648 TCACTAGACGATGACGGAGAAT 58.457 45.455 0.00 0.00 44.46 2.40
241 242 4.700700 TCACTAGACGATGACGGAGAATA 58.299 43.478 0.00 0.00 44.46 1.75
242 243 5.306394 TCACTAGACGATGACGGAGAATAT 58.694 41.667 0.00 0.00 44.46 1.28
243 244 6.461640 TCACTAGACGATGACGGAGAATATA 58.538 40.000 0.00 0.00 44.46 0.86
244 245 6.932960 TCACTAGACGATGACGGAGAATATAA 59.067 38.462 0.00 0.00 44.46 0.98
245 246 7.443272 TCACTAGACGATGACGGAGAATATAAA 59.557 37.037 0.00 0.00 44.46 1.40
246 247 7.746916 CACTAGACGATGACGGAGAATATAAAG 59.253 40.741 0.00 0.00 44.46 1.85
247 248 6.636562 AGACGATGACGGAGAATATAAAGT 57.363 37.500 0.00 0.00 44.46 2.66
248 249 7.040473 AGACGATGACGGAGAATATAAAGTT 57.960 36.000 0.00 0.00 44.46 2.66
249 250 7.140048 AGACGATGACGGAGAATATAAAGTTC 58.860 38.462 0.00 0.00 44.46 3.01
250 251 7.013464 AGACGATGACGGAGAATATAAAGTTCT 59.987 37.037 0.00 0.00 44.46 3.01
251 252 7.490000 ACGATGACGGAGAATATAAAGTTCTT 58.510 34.615 0.00 0.00 44.46 2.52
252 253 7.435488 ACGATGACGGAGAATATAAAGTTCTTG 59.565 37.037 0.00 0.00 44.46 3.02
253 254 7.648112 CGATGACGGAGAATATAAAGTTCTTGA 59.352 37.037 0.00 0.00 36.13 3.02
254 255 9.314321 GATGACGGAGAATATAAAGTTCTTGAA 57.686 33.333 0.00 0.00 36.13 2.69
255 256 8.703604 TGACGGAGAATATAAAGTTCTTGAAG 57.296 34.615 0.00 0.00 36.13 3.02
256 257 8.528643 TGACGGAGAATATAAAGTTCTTGAAGA 58.471 33.333 0.00 0.00 36.13 2.87
257 258 9.535878 GACGGAGAATATAAAGTTCTTGAAGAT 57.464 33.333 0.00 0.00 36.13 2.40
258 259 9.319143 ACGGAGAATATAAAGTTCTTGAAGATG 57.681 33.333 0.00 0.00 36.13 2.90
259 260 9.534565 CGGAGAATATAAAGTTCTTGAAGATGA 57.465 33.333 0.00 0.00 36.13 2.92
266 267 5.931441 AAGTTCTTGAAGATGAAAGGTCG 57.069 39.130 0.00 0.00 0.00 4.79
267 268 3.748568 AGTTCTTGAAGATGAAAGGTCGC 59.251 43.478 0.00 0.00 0.00 5.19
268 269 2.699954 TCTTGAAGATGAAAGGTCGCC 58.300 47.619 0.00 0.00 0.00 5.54
269 270 1.740025 CTTGAAGATGAAAGGTCGCCC 59.260 52.381 0.00 0.00 0.00 6.13
270 271 0.690192 TGAAGATGAAAGGTCGCCCA 59.310 50.000 0.00 0.00 0.00 5.36
271 272 1.087501 GAAGATGAAAGGTCGCCCAC 58.912 55.000 0.00 0.00 0.00 4.61
279 280 2.047179 GGTCGCCCACCTCTCAAC 60.047 66.667 0.00 0.00 42.84 3.18
280 281 2.432628 GTCGCCCACCTCTCAACG 60.433 66.667 0.00 0.00 0.00 4.10
281 282 4.373116 TCGCCCACCTCTCAACGC 62.373 66.667 0.00 0.00 0.00 4.84
312 313 2.442272 GGGCTGCTCCTACTCGGA 60.442 66.667 0.00 0.00 40.30 4.55
319 320 4.237445 TCCTACTCGGAGCGAAGG 57.763 61.111 4.58 9.79 36.69 3.46
320 321 2.119655 TCCTACTCGGAGCGAAGGC 61.120 63.158 13.91 0.00 34.86 4.35
321 322 2.413765 CTACTCGGAGCGAAGGCC 59.586 66.667 4.58 0.00 41.24 5.19
322 323 2.044252 TACTCGGAGCGAAGGCCT 60.044 61.111 0.00 0.00 41.24 5.19
323 324 1.668101 CTACTCGGAGCGAAGGCCTT 61.668 60.000 20.65 20.65 41.24 4.35
324 325 1.664321 TACTCGGAGCGAAGGCCTTC 61.664 60.000 32.12 32.12 41.24 3.46
325 326 2.680352 TCGGAGCGAAGGCCTTCT 60.680 61.111 36.30 23.22 41.24 2.85
326 327 2.232298 CTCGGAGCGAAGGCCTTCTT 62.232 60.000 36.30 26.48 41.24 2.52
327 328 1.376037 CGGAGCGAAGGCCTTCTTT 60.376 57.895 36.30 26.16 41.24 2.52
328 329 1.639298 CGGAGCGAAGGCCTTCTTTG 61.639 60.000 36.30 24.74 41.24 2.77
329 330 1.308783 GGAGCGAAGGCCTTCTTTGG 61.309 60.000 36.30 24.41 41.24 3.28
330 331 0.606673 GAGCGAAGGCCTTCTTTGGT 60.607 55.000 36.30 27.77 46.89 3.67
331 332 0.178990 AGCGAAGGCCTTCTTTGGTT 60.179 50.000 36.30 19.97 43.06 3.67
332 333 0.673985 GCGAAGGCCTTCTTTGGTTT 59.326 50.000 36.30 5.65 37.35 3.27
333 334 1.602920 GCGAAGGCCTTCTTTGGTTTG 60.603 52.381 36.30 22.15 37.35 2.93
334 335 1.000274 CGAAGGCCTTCTTTGGTTTGG 60.000 52.381 36.30 18.08 37.44 3.28
335 336 2.316108 GAAGGCCTTCTTTGGTTTGGA 58.684 47.619 33.98 0.00 35.50 3.53
336 337 2.001076 AGGCCTTCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 0.00 3.86
337 338 0.969149 GGCCTTCTTTGGTTTGGAGG 59.031 55.000 0.00 0.00 0.00 4.30
338 339 1.480498 GGCCTTCTTTGGTTTGGAGGA 60.480 52.381 0.00 0.00 0.00 3.71
339 340 2.316108 GCCTTCTTTGGTTTGGAGGAA 58.684 47.619 0.00 0.00 0.00 3.36
340 341 2.899900 GCCTTCTTTGGTTTGGAGGAAT 59.100 45.455 0.00 0.00 0.00 3.01
341 342 3.324846 GCCTTCTTTGGTTTGGAGGAATT 59.675 43.478 0.00 0.00 0.00 2.17
342 343 4.202357 GCCTTCTTTGGTTTGGAGGAATTT 60.202 41.667 0.00 0.00 0.00 1.82
343 344 5.687441 GCCTTCTTTGGTTTGGAGGAATTTT 60.687 40.000 0.00 0.00 0.00 1.82
344 345 6.463755 GCCTTCTTTGGTTTGGAGGAATTTTA 60.464 38.462 0.00 0.00 0.00 1.52
345 346 7.679783 CCTTCTTTGGTTTGGAGGAATTTTAT 58.320 34.615 0.00 0.00 0.00 1.40
346 347 8.811994 CCTTCTTTGGTTTGGAGGAATTTTATA 58.188 33.333 0.00 0.00 0.00 0.98
347 348 9.860898 CTTCTTTGGTTTGGAGGAATTTTATAG 57.139 33.333 0.00 0.00 0.00 1.31
348 349 8.361169 TCTTTGGTTTGGAGGAATTTTATAGG 57.639 34.615 0.00 0.00 0.00 2.57
349 350 8.174085 TCTTTGGTTTGGAGGAATTTTATAGGA 58.826 33.333 0.00 0.00 0.00 2.94
350 351 8.909423 TTTGGTTTGGAGGAATTTTATAGGAT 57.091 30.769 0.00 0.00 0.00 3.24
351 352 9.998752 TTTGGTTTGGAGGAATTTTATAGGATA 57.001 29.630 0.00 0.00 0.00 2.59
386 387 6.360370 GGAATTTTTCCTTTAGAGCCCTTT 57.640 37.500 0.00 0.00 46.57 3.11
387 388 6.166279 GGAATTTTTCCTTTAGAGCCCTTTG 58.834 40.000 0.00 0.00 46.57 2.77
388 389 5.745312 ATTTTTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
389 390 3.895704 TTTCCTTTAGAGCCCTTTGGT 57.104 42.857 0.00 0.00 0.00 3.67
390 391 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
391 392 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
392 393 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
393 394 3.084786 CCTTTAGAGCCCTTTGGTTCAG 58.915 50.000 0.00 0.00 43.89 3.02
394 395 3.244911 CCTTTAGAGCCCTTTGGTTCAGA 60.245 47.826 0.00 0.00 43.89 3.27
395 396 3.703001 TTAGAGCCCTTTGGTTCAGAG 57.297 47.619 0.00 0.00 43.89 3.35
396 397 1.734655 AGAGCCCTTTGGTTCAGAGA 58.265 50.000 0.00 0.00 43.89 3.10
397 398 2.057922 AGAGCCCTTTGGTTCAGAGAA 58.942 47.619 0.00 0.00 43.89 2.87
398 399 2.443255 AGAGCCCTTTGGTTCAGAGAAA 59.557 45.455 0.00 0.00 43.89 2.52
399 400 3.075134 AGAGCCCTTTGGTTCAGAGAAAT 59.925 43.478 0.00 0.00 43.89 2.17
400 401 3.160269 AGCCCTTTGGTTCAGAGAAATG 58.840 45.455 0.00 0.00 0.00 2.32
401 402 2.232208 GCCCTTTGGTTCAGAGAAATGG 59.768 50.000 0.00 0.00 0.00 3.16
402 403 3.766545 CCCTTTGGTTCAGAGAAATGGA 58.233 45.455 0.00 0.00 0.00 3.41
403 404 4.347607 CCCTTTGGTTCAGAGAAATGGAT 58.652 43.478 0.00 0.00 0.00 3.41
404 405 4.774200 CCCTTTGGTTCAGAGAAATGGATT 59.226 41.667 0.00 0.00 0.00 3.01
405 406 5.951747 CCCTTTGGTTCAGAGAAATGGATTA 59.048 40.000 0.00 0.00 0.00 1.75
406 407 6.127619 CCCTTTGGTTCAGAGAAATGGATTAC 60.128 42.308 0.00 0.00 0.00 1.89
407 408 6.660949 CCTTTGGTTCAGAGAAATGGATTACT 59.339 38.462 0.00 0.00 0.00 2.24
408 409 7.829211 CCTTTGGTTCAGAGAAATGGATTACTA 59.171 37.037 0.00 0.00 0.00 1.82
409 410 9.401058 CTTTGGTTCAGAGAAATGGATTACTAT 57.599 33.333 0.00 0.00 0.00 2.12
410 411 9.753674 TTTGGTTCAGAGAAATGGATTACTATT 57.246 29.630 0.00 0.00 0.00 1.73
411 412 8.964476 TGGTTCAGAGAAATGGATTACTATTC 57.036 34.615 0.00 0.00 0.00 1.75
412 413 7.993183 TGGTTCAGAGAAATGGATTACTATTCC 59.007 37.037 0.00 0.00 0.00 3.01
413 414 8.214364 GGTTCAGAGAAATGGATTACTATTCCT 58.786 37.037 0.00 0.00 34.17 3.36
416 417 9.434275 TCAGAGAAATGGATTACTATTCCTACA 57.566 33.333 0.00 0.00 34.17 2.74
443 444 7.991084 TGATTGATTCATATCCTCCACATTC 57.009 36.000 0.00 0.00 0.00 2.67
444 445 6.944290 TGATTGATTCATATCCTCCACATTCC 59.056 38.462 0.00 0.00 0.00 3.01
445 446 5.910355 TGATTCATATCCTCCACATTCCA 57.090 39.130 0.00 0.00 0.00 3.53
446 447 6.264771 TGATTCATATCCTCCACATTCCAA 57.735 37.500 0.00 0.00 0.00 3.53
447 448 6.671605 TGATTCATATCCTCCACATTCCAAA 58.328 36.000 0.00 0.00 0.00 3.28
448 449 6.774170 TGATTCATATCCTCCACATTCCAAAG 59.226 38.462 0.00 0.00 0.00 2.77
449 450 5.974156 TCATATCCTCCACATTCCAAAGA 57.026 39.130 0.00 0.00 0.00 2.52
450 451 6.325993 TCATATCCTCCACATTCCAAAGAA 57.674 37.500 0.00 0.00 36.15 2.52
451 452 6.730447 TCATATCCTCCACATTCCAAAGAAA 58.270 36.000 0.00 0.00 35.09 2.52
452 453 7.181361 TCATATCCTCCACATTCCAAAGAAAA 58.819 34.615 0.00 0.00 35.09 2.29
453 454 7.673504 TCATATCCTCCACATTCCAAAGAAAAA 59.326 33.333 0.00 0.00 35.09 1.94
454 455 6.940430 ATCCTCCACATTCCAAAGAAAAAT 57.060 33.333 0.00 0.00 35.09 1.82
455 456 9.713684 ATATCCTCCACATTCCAAAGAAAAATA 57.286 29.630 0.00 0.00 35.09 1.40
456 457 7.847711 TCCTCCACATTCCAAAGAAAAATAA 57.152 32.000 0.00 0.00 35.09 1.40
457 458 8.256356 TCCTCCACATTCCAAAGAAAAATAAA 57.744 30.769 0.00 0.00 35.09 1.40
458 459 8.147704 TCCTCCACATTCCAAAGAAAAATAAAC 58.852 33.333 0.00 0.00 35.09 2.01
459 460 7.930865 CCTCCACATTCCAAAGAAAAATAAACA 59.069 33.333 0.00 0.00 35.09 2.83
460 461 9.492973 CTCCACATTCCAAAGAAAAATAAACAT 57.507 29.630 0.00 0.00 35.09 2.71
461 462 9.270640 TCCACATTCCAAAGAAAAATAAACATG 57.729 29.630 0.00 0.00 35.09 3.21
462 463 9.270640 CCACATTCCAAAGAAAAATAAACATGA 57.729 29.630 0.00 0.00 35.09 3.07
464 465 8.992073 ACATTCCAAAGAAAAATAAACATGAGC 58.008 29.630 0.00 0.00 35.09 4.26
465 466 7.961325 TTCCAAAGAAAAATAAACATGAGCC 57.039 32.000 0.00 0.00 0.00 4.70
466 467 7.301868 TCCAAAGAAAAATAAACATGAGCCT 57.698 32.000 0.00 0.00 0.00 4.58
467 468 8.415950 TCCAAAGAAAAATAAACATGAGCCTA 57.584 30.769 0.00 0.00 0.00 3.93
468 469 9.034800 TCCAAAGAAAAATAAACATGAGCCTAT 57.965 29.630 0.00 0.00 0.00 2.57
473 474 9.461312 AGAAAAATAAACATGAGCCTATACACA 57.539 29.630 0.00 0.00 0.00 3.72
477 478 7.750229 ATAAACATGAGCCTATACACAATGG 57.250 36.000 0.00 0.00 0.00 3.16
478 479 5.372343 AACATGAGCCTATACACAATGGA 57.628 39.130 0.00 0.00 0.00 3.41
479 480 5.372343 ACATGAGCCTATACACAATGGAA 57.628 39.130 0.00 0.00 0.00 3.53
480 481 5.754782 ACATGAGCCTATACACAATGGAAA 58.245 37.500 0.00 0.00 0.00 3.13
481 482 6.186957 ACATGAGCCTATACACAATGGAAAA 58.813 36.000 0.00 0.00 0.00 2.29
482 483 6.663093 ACATGAGCCTATACACAATGGAAAAA 59.337 34.615 0.00 0.00 0.00 1.94
483 484 7.342799 ACATGAGCCTATACACAATGGAAAAAT 59.657 33.333 0.00 0.00 0.00 1.82
484 485 7.716799 TGAGCCTATACACAATGGAAAAATT 57.283 32.000 0.00 0.00 0.00 1.82
485 486 8.133024 TGAGCCTATACACAATGGAAAAATTT 57.867 30.769 0.00 0.00 0.00 1.82
486 487 8.250332 TGAGCCTATACACAATGGAAAAATTTC 58.750 33.333 0.00 0.00 36.46 2.17
487 488 8.366359 AGCCTATACACAATGGAAAAATTTCT 57.634 30.769 5.91 0.00 37.35 2.52
488 489 9.474313 AGCCTATACACAATGGAAAAATTTCTA 57.526 29.630 5.91 0.34 37.35 2.10
494 495 8.483307 ACACAATGGAAAAATTTCTATGATGC 57.517 30.769 5.64 0.00 38.23 3.91
495 496 7.276218 ACACAATGGAAAAATTTCTATGATGCG 59.724 33.333 5.64 0.00 38.23 4.73
496 497 7.488792 CACAATGGAAAAATTTCTATGATGCGA 59.511 33.333 5.64 0.00 38.23 5.10
497 498 8.034215 ACAATGGAAAAATTTCTATGATGCGAA 58.966 29.630 5.64 0.00 38.23 4.70
498 499 9.037737 CAATGGAAAAATTTCTATGATGCGAAT 57.962 29.630 5.64 0.00 38.23 3.34
499 500 8.807667 ATGGAAAAATTTCTATGATGCGAATC 57.192 30.769 0.00 0.00 37.06 2.52
500 501 7.770201 TGGAAAAATTTCTATGATGCGAATCA 58.230 30.769 8.96 8.96 37.35 2.57
501 502 8.249638 TGGAAAAATTTCTATGATGCGAATCAA 58.750 29.630 10.89 0.00 37.35 2.57
502 503 9.086336 GGAAAAATTTCTATGATGCGAATCAAA 57.914 29.630 10.89 0.00 37.35 2.69
505 506 9.806203 AAAATTTCTATGATGCGAATCAAATGA 57.194 25.926 10.89 6.23 33.83 2.57
506 507 8.792831 AATTTCTATGATGCGAATCAAATGAC 57.207 30.769 10.89 0.00 33.83 3.06
507 508 6.923928 TTCTATGATGCGAATCAAATGACA 57.076 33.333 10.89 0.00 33.83 3.58
508 509 7.500720 TTCTATGATGCGAATCAAATGACAT 57.499 32.000 10.89 0.00 33.83 3.06
509 510 8.606040 TTCTATGATGCGAATCAAATGACATA 57.394 30.769 10.89 0.00 33.83 2.29
510 511 8.782339 TCTATGATGCGAATCAAATGACATAT 57.218 30.769 10.89 0.00 33.83 1.78
511 512 8.876790 TCTATGATGCGAATCAAATGACATATC 58.123 33.333 10.89 0.00 33.83 1.63
512 513 7.683437 ATGATGCGAATCAAATGACATATCT 57.317 32.000 10.89 0.00 33.83 1.98
513 514 7.500720 TGATGCGAATCAAATGACATATCTT 57.499 32.000 2.71 0.00 0.00 2.40
514 515 7.933396 TGATGCGAATCAAATGACATATCTTT 58.067 30.769 2.71 0.00 0.00 2.52
515 516 8.407832 TGATGCGAATCAAATGACATATCTTTT 58.592 29.630 2.71 0.00 33.61 2.27
516 517 8.792831 ATGCGAATCAAATGACATATCTTTTC 57.207 30.769 0.00 0.00 31.59 2.29
517 518 7.195646 TGCGAATCAAATGACATATCTTTTCC 58.804 34.615 0.00 0.00 31.59 3.13
518 519 7.067372 TGCGAATCAAATGACATATCTTTTCCT 59.933 33.333 0.00 0.00 31.59 3.36
519 520 8.559536 GCGAATCAAATGACATATCTTTTCCTA 58.440 33.333 0.00 0.00 31.59 2.94
565 566 8.207545 ACATGTCATCTTATTTTCTACTCCTCC 58.792 37.037 0.00 0.00 0.00 4.30
566 567 7.125792 TGTCATCTTATTTTCTACTCCTCCC 57.874 40.000 0.00 0.00 0.00 4.30
567 568 6.183360 TGTCATCTTATTTTCTACTCCTCCCG 60.183 42.308 0.00 0.00 0.00 5.14
568 569 5.897824 TCATCTTATTTTCTACTCCTCCCGT 59.102 40.000 0.00 0.00 0.00 5.28
569 570 6.383147 TCATCTTATTTTCTACTCCTCCCGTT 59.617 38.462 0.00 0.00 0.00 4.44
570 571 6.218108 TCTTATTTTCTACTCCTCCCGTTC 57.782 41.667 0.00 0.00 0.00 3.95
571 572 3.908643 ATTTTCTACTCCTCCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
572 573 2.617840 TTTCTACTCCTCCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
573 574 3.744940 TTTCTACTCCTCCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
574 575 3.744940 TTCTACTCCTCCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
575 576 3.744940 TCTACTCCTCCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
576 577 4.261411 TCTACTCCTCCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
577 578 5.393068 TCTACTCCTCCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
578 579 5.961897 TCTACTCCTCCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
579 580 7.095183 TCTACTCCTCCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
580 581 7.529555 TCTACTCCTCCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
581 582 6.667558 ACTCCTCCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
582 583 6.141790 ACTCCTCCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
583 584 6.267242 ACTCCTCCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
584 585 6.379579 TCCTCCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
585 586 6.842807 TCCTCCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
586 587 7.346436 TCCTCCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
587 588 7.441458 CCTCCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
588 589 7.854337 TCCCGTTCCTAAATATAAGTCTTTGT 58.146 34.615 0.00 0.00 0.00 2.83
589 590 8.980596 TCCCGTTCCTAAATATAAGTCTTTGTA 58.019 33.333 0.00 0.00 0.00 2.41
590 591 9.257651 CCCGTTCCTAAATATAAGTCTTTGTAG 57.742 37.037 0.00 0.00 0.00 2.74
605 606 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
606 607 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
607 608 8.254508 GTCTTTGTAGAGATTTCACTATGGACT 58.745 37.037 0.00 0.00 0.00 3.85
608 609 9.475620 TCTTTGTAGAGATTTCACTATGGACTA 57.524 33.333 0.00 0.00 0.00 2.59
609 610 9.522804 CTTTGTAGAGATTTCACTATGGACTAC 57.477 37.037 0.00 0.00 0.00 2.73
610 611 8.589701 TTGTAGAGATTTCACTATGGACTACA 57.410 34.615 0.00 0.00 36.83 2.74
611 612 8.768501 TGTAGAGATTTCACTATGGACTACAT 57.231 34.615 0.00 0.00 43.68 2.29
612 613 9.862149 TGTAGAGATTTCACTATGGACTACATA 57.138 33.333 0.00 0.00 41.03 2.29
614 615 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
615 616 7.720074 AGAGATTTCACTATGGACTACATACGA 59.280 37.037 0.00 0.00 41.03 3.43
616 617 8.234136 AGATTTCACTATGGACTACATACGAA 57.766 34.615 0.00 0.00 41.03 3.85
617 618 8.353684 AGATTTCACTATGGACTACATACGAAG 58.646 37.037 0.00 0.00 41.03 3.79
618 619 5.434352 TCACTATGGACTACATACGAAGC 57.566 43.478 0.00 0.00 41.03 3.86
619 620 4.885325 TCACTATGGACTACATACGAAGCA 59.115 41.667 0.00 0.00 41.03 3.91
620 621 5.358725 TCACTATGGACTACATACGAAGCAA 59.641 40.000 0.00 0.00 41.03 3.91
621 622 6.040247 CACTATGGACTACATACGAAGCAAA 58.960 40.000 0.00 0.00 41.03 3.68
622 623 6.533723 CACTATGGACTACATACGAAGCAAAA 59.466 38.462 0.00 0.00 41.03 2.44
623 624 7.224753 CACTATGGACTACATACGAAGCAAAAT 59.775 37.037 0.00 0.00 41.03 1.82
624 625 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
625 626 5.242434 TGGACTACATACGAAGCAAAATGT 58.758 37.500 0.00 0.00 36.56 2.71
626 627 5.350365 TGGACTACATACGAAGCAAAATGTC 59.650 40.000 0.00 0.00 34.54 3.06
627 628 5.581085 GGACTACATACGAAGCAAAATGTCT 59.419 40.000 0.00 0.00 34.54 3.41
628 629 6.408858 ACTACATACGAAGCAAAATGTCTG 57.591 37.500 0.00 0.00 34.54 3.51
629 630 6.163476 ACTACATACGAAGCAAAATGTCTGA 58.837 36.000 0.00 0.00 34.54 3.27
630 631 5.940192 ACATACGAAGCAAAATGTCTGAA 57.060 34.783 0.00 0.00 0.00 3.02
631 632 6.500684 ACATACGAAGCAAAATGTCTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
632 633 6.546395 ACATACGAAGCAAAATGTCTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
633 634 6.372659 ACATACGAAGCAAAATGTCTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
634 635 7.549134 ACATACGAAGCAAAATGTCTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
635 636 6.992063 ACGAAGCAAAATGTCTGAATCTAT 57.008 33.333 0.00 0.00 0.00 1.98
636 637 9.764363 ATACGAAGCAAAATGTCTGAATCTATA 57.236 29.630 0.00 0.00 0.00 1.31
637 638 7.910304 ACGAAGCAAAATGTCTGAATCTATAC 58.090 34.615 0.00 0.00 0.00 1.47
638 639 7.766278 ACGAAGCAAAATGTCTGAATCTATACT 59.234 33.333 0.00 0.00 0.00 2.12
639 640 8.272176 CGAAGCAAAATGTCTGAATCTATACTC 58.728 37.037 0.00 0.00 0.00 2.59
640 641 9.323985 GAAGCAAAATGTCTGAATCTATACTCT 57.676 33.333 0.00 0.00 0.00 3.24
662 663 8.982685 ACTCTAAAATGCATCTACATACATTCG 58.017 33.333 0.00 0.00 31.75 3.34
663 664 8.887036 TCTAAAATGCATCTACATACATTCGT 57.113 30.769 0.00 0.00 31.75 3.85
664 665 9.974980 TCTAAAATGCATCTACATACATTCGTA 57.025 29.630 0.00 0.00 31.75 3.43
679 680 9.410556 CATACATTCGTATGTGATTCATAGTGA 57.589 33.333 16.91 0.00 46.70 3.41
680 681 9.981114 ATACATTCGTATGTGATTCATAGTGAA 57.019 29.630 16.91 0.00 44.56 3.18
681 682 8.716646 ACATTCGTATGTGATTCATAGTGAAA 57.283 30.769 6.89 0.00 43.29 2.69
682 683 8.604035 ACATTCGTATGTGATTCATAGTGAAAC 58.396 33.333 6.89 0.00 43.29 2.78
711 712 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
712 713 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
714 715 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
715 716 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
718 719 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
722 723 3.684408 AGGAACGGAGGGAGTATAAGT 57.316 47.619 0.00 0.00 0.00 2.24
723 724 3.991683 AGGAACGGAGGGAGTATAAGTT 58.008 45.455 0.00 0.00 0.00 2.66
724 725 4.359996 AGGAACGGAGGGAGTATAAGTTT 58.640 43.478 0.00 0.00 0.00 2.66
726 727 5.250082 AGGAACGGAGGGAGTATAAGTTTTT 59.750 40.000 0.00 0.00 0.00 1.94
770 1008 1.893137 GCCGAAATCTTGGAACCCTTT 59.107 47.619 0.00 0.00 0.00 3.11
771 1009 2.352715 GCCGAAATCTTGGAACCCTTTG 60.353 50.000 0.00 0.00 0.00 2.77
772 1010 2.352715 CCGAAATCTTGGAACCCTTTGC 60.353 50.000 0.00 0.00 0.00 3.68
773 1011 2.668279 CGAAATCTTGGAACCCTTTGCG 60.668 50.000 0.00 0.00 0.00 4.85
775 1013 1.826385 ATCTTGGAACCCTTTGCGAG 58.174 50.000 0.00 0.00 36.18 5.03
776 1014 0.889186 TCTTGGAACCCTTTGCGAGC 60.889 55.000 0.00 0.00 35.09 5.03
780 1018 2.966309 GAACCCTTTGCGAGCGTGG 61.966 63.158 0.00 0.00 0.00 4.94
910 1149 2.931649 TTGTCCTTCCCCGTCCCC 60.932 66.667 0.00 0.00 0.00 4.81
1088 1342 0.096454 GCGGTTAACGTTCATGGCTC 59.904 55.000 2.82 0.00 46.52 4.70
1227 1484 2.757077 CCCACCCCTTTCTTCGCT 59.243 61.111 0.00 0.00 0.00 4.93
1272 1529 2.545810 CTCCTCCCCCAGATCTATTCC 58.454 57.143 0.00 0.00 0.00 3.01
1495 1758 5.752955 TGTGCTGCTTGTTTATTTTTCCTTC 59.247 36.000 0.00 0.00 0.00 3.46
1501 1764 8.245195 TGCTTGTTTATTTTTCCTTCTAGGTT 57.755 30.769 0.00 0.00 36.53 3.50
1513 1776 1.153229 CTAGGTTACCAAGGCGGCC 60.153 63.158 12.11 12.11 39.03 6.13
1561 1824 2.828520 TGAGGTTTGTCTGGTTTTTGCA 59.171 40.909 0.00 0.00 0.00 4.08
1598 1861 7.775053 TTTATATTTGTGGAAAGTTGCTCCT 57.225 32.000 0.00 0.00 33.77 3.69
1619 1883 2.014128 GTGCCGTTATACTTGCCACAT 58.986 47.619 0.00 0.00 0.00 3.21
1730 2004 2.154963 CCGTTACAATGTCAGTGTGTCG 59.845 50.000 15.91 17.27 0.00 4.35
1805 2079 0.036010 GTGGATACCTGTGCAGTGCT 60.036 55.000 17.60 0.00 0.00 4.40
1984 2263 6.148480 ACTGTCTTGCTGAGCTGTTTAATAAG 59.852 38.462 5.83 0.00 0.00 1.73
2025 2305 7.330208 GGTGAAGGAAAGATGAATTGTTTGATG 59.670 37.037 0.00 0.00 0.00 3.07
2288 2569 2.299993 TCTGACGTTGAGGATGATGC 57.700 50.000 0.00 0.00 0.00 3.91
2360 2641 7.665559 AGTGCTGATGGAATTTACTTCTTGTTA 59.334 33.333 0.00 0.00 34.08 2.41
2519 2800 5.580691 TGTAAGGAGAATGTTTAGATGCGTG 59.419 40.000 0.00 0.00 0.00 5.34
2561 2842 5.649557 CTGGAGATGTCTCTGTTTGACTAG 58.350 45.833 9.68 0.00 42.48 2.57
2607 2889 1.947456 ACTGCTTTTCTTTCGTGGACC 59.053 47.619 0.00 0.00 0.00 4.46
2732 3014 6.089476 GCCTTTCACTTTCTTATTGCTTCTC 58.911 40.000 0.00 0.00 0.00 2.87
2736 3021 9.688592 CTTTCACTTTCTTATTGCTTCTCATTT 57.311 29.630 0.00 0.00 0.00 2.32
2755 3040 0.604780 TTCCTGCTGCACTTGCTCTC 60.605 55.000 0.00 0.00 42.66 3.20
2805 3090 6.672266 TTTATTAAGGTTGTGCCCAATTGA 57.328 33.333 7.12 0.00 38.26 2.57
2872 3244 5.645497 GCAGTCAGGACATCAGAAGTAATTT 59.355 40.000 1.84 0.00 0.00 1.82
2874 3246 7.334421 GCAGTCAGGACATCAGAAGTAATTTTA 59.666 37.037 1.84 0.00 0.00 1.52
2920 3292 1.742761 GATGCTAGTTGCTGGCTTGA 58.257 50.000 6.10 0.00 43.37 3.02
2952 3324 5.008217 GGTTGTGTGACTTGTGTTAGCATAA 59.992 40.000 0.00 0.00 0.00 1.90
2986 3358 5.629348 TTTTTGCGAGAAAATTTCCGTTC 57.371 34.783 14.53 2.19 0.00 3.95
2987 3359 4.561735 TTTGCGAGAAAATTTCCGTTCT 57.438 36.364 14.53 0.00 36.80 3.01
2988 3360 3.536158 TGCGAGAAAATTTCCGTTCTG 57.464 42.857 14.53 1.90 34.23 3.02
2989 3361 2.875933 TGCGAGAAAATTTCCGTTCTGT 59.124 40.909 14.53 0.00 34.23 3.41
2990 3362 3.314080 TGCGAGAAAATTTCCGTTCTGTT 59.686 39.130 14.53 0.00 34.23 3.16
2991 3363 4.512198 TGCGAGAAAATTTCCGTTCTGTTA 59.488 37.500 14.53 0.00 34.23 2.41
2992 3364 5.007823 TGCGAGAAAATTTCCGTTCTGTTAA 59.992 36.000 14.53 0.00 34.23 2.01
2993 3365 6.084277 GCGAGAAAATTTCCGTTCTGTTAAT 58.916 36.000 14.53 0.00 34.23 1.40
2994 3366 6.032460 GCGAGAAAATTTCCGTTCTGTTAATG 59.968 38.462 14.53 0.00 34.23 1.90
2995 3367 6.523201 CGAGAAAATTTCCGTTCTGTTAATGG 59.477 38.462 1.57 0.00 34.23 3.16
2996 3368 6.156519 AGAAAATTTCCGTTCTGTTAATGGC 58.843 36.000 1.57 0.00 32.84 4.40
2997 3369 5.461032 AAATTTCCGTTCTGTTAATGGCA 57.539 34.783 0.00 0.00 0.00 4.92
2998 3370 4.701956 ATTTCCGTTCTGTTAATGGCAG 57.298 40.909 0.00 0.00 35.43 4.85
2999 3371 2.851263 TCCGTTCTGTTAATGGCAGT 57.149 45.000 0.00 0.00 35.60 4.40
3000 3372 3.965379 TCCGTTCTGTTAATGGCAGTA 57.035 42.857 0.00 0.00 35.60 2.74
3001 3373 3.592059 TCCGTTCTGTTAATGGCAGTAC 58.408 45.455 0.00 0.00 35.60 2.73
3002 3374 3.007074 TCCGTTCTGTTAATGGCAGTACA 59.993 43.478 0.00 0.00 35.07 2.90
3003 3375 3.749088 CCGTTCTGTTAATGGCAGTACAA 59.251 43.478 0.00 0.00 35.07 2.41
3004 3376 4.378046 CCGTTCTGTTAATGGCAGTACAAC 60.378 45.833 0.00 0.00 35.07 3.32
3005 3377 4.665645 CGTTCTGTTAATGGCAGTACAACG 60.666 45.833 10.96 10.96 36.30 4.10
3006 3378 4.260139 TCTGTTAATGGCAGTACAACGA 57.740 40.909 0.00 0.00 35.60 3.85
3007 3379 4.633175 TCTGTTAATGGCAGTACAACGAA 58.367 39.130 0.00 0.00 35.60 3.85
3008 3380 5.057819 TCTGTTAATGGCAGTACAACGAAA 58.942 37.500 0.00 0.00 35.60 3.46
3009 3381 5.527951 TCTGTTAATGGCAGTACAACGAAAA 59.472 36.000 0.00 0.00 35.60 2.29
3010 3382 6.205853 TCTGTTAATGGCAGTACAACGAAAAT 59.794 34.615 0.00 0.00 35.60 1.82
3011 3383 6.375377 TGTTAATGGCAGTACAACGAAAATC 58.625 36.000 0.00 0.00 0.00 2.17
3012 3384 6.017026 TGTTAATGGCAGTACAACGAAAATCA 60.017 34.615 0.00 0.00 0.00 2.57
3013 3385 4.685169 ATGGCAGTACAACGAAAATCAG 57.315 40.909 0.00 0.00 0.00 2.90
3014 3386 3.734463 TGGCAGTACAACGAAAATCAGA 58.266 40.909 0.00 0.00 0.00 3.27
3015 3387 4.130857 TGGCAGTACAACGAAAATCAGAA 58.869 39.130 0.00 0.00 0.00 3.02
3016 3388 4.576873 TGGCAGTACAACGAAAATCAGAAA 59.423 37.500 0.00 0.00 0.00 2.52
3017 3389 5.240623 TGGCAGTACAACGAAAATCAGAAAT 59.759 36.000 0.00 0.00 0.00 2.17
3018 3390 6.428465 TGGCAGTACAACGAAAATCAGAAATA 59.572 34.615 0.00 0.00 0.00 1.40
3019 3391 7.041030 TGGCAGTACAACGAAAATCAGAAATAA 60.041 33.333 0.00 0.00 0.00 1.40
3020 3392 7.968405 GGCAGTACAACGAAAATCAGAAATAAT 59.032 33.333 0.00 0.00 0.00 1.28
3021 3393 9.982291 GCAGTACAACGAAAATCAGAAATAATA 57.018 29.630 0.00 0.00 0.00 0.98
3070 3442 6.092944 CACGTTAAGTTTGCCCATGTATTCTA 59.907 38.462 0.00 0.00 0.00 2.10
3100 3472 5.738118 AATTTGTGCAGTGAAACAATTGG 57.262 34.783 10.83 0.00 41.43 3.16
3105 3477 3.067461 GTGCAGTGAAACAATTGGTGGTA 59.933 43.478 10.83 0.00 41.43 3.25
3154 3526 6.352516 ACAACAAAATCATTTTAAGGTGGCA 58.647 32.000 0.00 0.00 0.00 4.92
3279 3797 1.290955 CATGGCAAGTGCAGTTGGG 59.709 57.895 30.38 11.26 44.36 4.12
3280 3798 1.152483 ATGGCAAGTGCAGTTGGGT 60.152 52.632 30.38 0.00 44.36 4.51
3336 3855 2.693797 AGACGAAAAGCAACTGCATG 57.306 45.000 4.22 0.00 45.16 4.06
3400 3919 1.435408 GGAGCAGCTCTTTCGCCATC 61.435 60.000 21.99 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.560542 CACTTCTAGGGGATCATCCTCG 59.439 54.545 2.93 5.12 43.53 4.63
1 2 2.301583 GCACTTCTAGGGGATCATCCTC 59.698 54.545 2.93 0.00 37.26 3.71
2 3 2.334023 GCACTTCTAGGGGATCATCCT 58.666 52.381 2.93 11.00 36.57 3.24
3 4 2.038295 CTGCACTTCTAGGGGATCATCC 59.962 54.545 0.00 0.00 35.23 3.51
4 5 2.038295 CCTGCACTTCTAGGGGATCATC 59.962 54.545 0.00 0.00 0.00 2.92
5 6 2.053244 CCTGCACTTCTAGGGGATCAT 58.947 52.381 0.00 0.00 0.00 2.45
6 7 1.500474 CCTGCACTTCTAGGGGATCA 58.500 55.000 0.00 0.00 0.00 2.92
7 8 0.107643 GCCTGCACTTCTAGGGGATC 59.892 60.000 0.00 0.00 34.58 3.36
8 9 1.348775 GGCCTGCACTTCTAGGGGAT 61.349 60.000 0.00 0.00 34.58 3.85
9 10 1.995626 GGCCTGCACTTCTAGGGGA 60.996 63.158 0.00 0.00 34.58 4.81
10 11 2.592308 GGCCTGCACTTCTAGGGG 59.408 66.667 0.00 0.00 34.58 4.79
11 12 2.187946 CGGCCTGCACTTCTAGGG 59.812 66.667 0.00 0.00 34.58 3.53
12 13 2.512515 GCGGCCTGCACTTCTAGG 60.513 66.667 13.61 0.00 45.45 3.02
22 23 0.813610 TATTGTGATTCGGCGGCCTG 60.814 55.000 18.34 10.86 0.00 4.85
23 24 0.108585 ATATTGTGATTCGGCGGCCT 59.891 50.000 18.34 0.00 0.00 5.19
24 25 0.517316 GATATTGTGATTCGGCGGCC 59.483 55.000 9.54 9.54 0.00 6.13
25 26 1.512926 AGATATTGTGATTCGGCGGC 58.487 50.000 7.21 0.00 0.00 6.53
26 27 3.059597 GTGAAGATATTGTGATTCGGCGG 60.060 47.826 7.21 0.00 0.00 6.13
27 28 3.059597 GGTGAAGATATTGTGATTCGGCG 60.060 47.826 0.00 0.00 0.00 6.46
28 29 3.876914 TGGTGAAGATATTGTGATTCGGC 59.123 43.478 0.00 0.00 0.00 5.54
29 30 5.049198 CCATGGTGAAGATATTGTGATTCGG 60.049 44.000 2.57 0.00 0.00 4.30
30 31 5.528690 ACCATGGTGAAGATATTGTGATTCG 59.471 40.000 18.99 0.00 0.00 3.34
31 32 6.949352 ACCATGGTGAAGATATTGTGATTC 57.051 37.500 18.99 0.00 0.00 2.52
44 45 9.170983 GAAATCTTTCATCGACACCATGGTGAA 62.171 40.741 44.02 29.71 41.23 3.18
45 46 7.785393 GAAATCTTTCATCGACACCATGGTGA 61.785 42.308 44.02 26.73 41.23 4.02
46 47 5.674569 GAAATCTTTCATCGACACCATGGTG 60.675 44.000 37.81 37.81 42.66 4.17
47 48 3.634397 ATCTTTCATCGACACCATGGT 57.366 42.857 13.00 13.00 0.00 3.55
48 49 4.395854 TGAAATCTTTCATCGACACCATGG 59.604 41.667 11.19 11.19 41.88 3.66
49 50 5.550232 TGAAATCTTTCATCGACACCATG 57.450 39.130 1.28 0.00 41.88 3.66
50 51 5.707298 AGTTGAAATCTTTCATCGACACCAT 59.293 36.000 6.21 0.00 45.65 3.55
51 52 5.063204 AGTTGAAATCTTTCATCGACACCA 58.937 37.500 6.21 0.00 45.65 4.17
52 53 5.390991 GGAGTTGAAATCTTTCATCGACACC 60.391 44.000 6.21 6.48 45.65 4.16
53 54 5.179368 TGGAGTTGAAATCTTTCATCGACAC 59.821 40.000 6.21 2.11 45.65 3.67
54 55 5.179368 GTGGAGTTGAAATCTTTCATCGACA 59.821 40.000 6.21 7.43 45.65 4.35
55 56 5.179368 TGTGGAGTTGAAATCTTTCATCGAC 59.821 40.000 6.21 9.37 45.65 4.20
56 57 5.304778 TGTGGAGTTGAAATCTTTCATCGA 58.695 37.500 6.21 0.00 45.65 3.59
57 58 5.611796 TGTGGAGTTGAAATCTTTCATCG 57.388 39.130 6.21 0.00 45.65 3.84
58 59 7.651808 TCTTTGTGGAGTTGAAATCTTTCATC 58.348 34.615 6.21 6.02 45.65 2.92
59 60 7.587037 TCTTTGTGGAGTTGAAATCTTTCAT 57.413 32.000 6.21 0.00 45.65 2.57
60 61 7.257722 GTTCTTTGTGGAGTTGAAATCTTTCA 58.742 34.615 1.28 1.28 44.78 2.69
61 62 6.697455 GGTTCTTTGTGGAGTTGAAATCTTTC 59.303 38.462 0.00 0.00 37.69 2.62
62 63 6.154363 TGGTTCTTTGTGGAGTTGAAATCTTT 59.846 34.615 0.00 0.00 0.00 2.52
63 64 5.656416 TGGTTCTTTGTGGAGTTGAAATCTT 59.344 36.000 0.00 0.00 0.00 2.40
64 65 5.200483 TGGTTCTTTGTGGAGTTGAAATCT 58.800 37.500 0.00 0.00 0.00 2.40
65 66 5.514274 TGGTTCTTTGTGGAGTTGAAATC 57.486 39.130 0.00 0.00 0.00 2.17
66 67 5.930837 TTGGTTCTTTGTGGAGTTGAAAT 57.069 34.783 0.00 0.00 0.00 2.17
67 68 5.474825 GTTTGGTTCTTTGTGGAGTTGAAA 58.525 37.500 0.00 0.00 0.00 2.69
68 69 4.081917 GGTTTGGTTCTTTGTGGAGTTGAA 60.082 41.667 0.00 0.00 0.00 2.69
69 70 3.445805 GGTTTGGTTCTTTGTGGAGTTGA 59.554 43.478 0.00 0.00 0.00 3.18
70 71 3.194542 TGGTTTGGTTCTTTGTGGAGTTG 59.805 43.478 0.00 0.00 0.00 3.16
71 72 3.436243 TGGTTTGGTTCTTTGTGGAGTT 58.564 40.909 0.00 0.00 0.00 3.01
72 73 3.094484 TGGTTTGGTTCTTTGTGGAGT 57.906 42.857 0.00 0.00 0.00 3.85
73 74 3.699038 TCTTGGTTTGGTTCTTTGTGGAG 59.301 43.478 0.00 0.00 0.00 3.86
74 75 3.702792 TCTTGGTTTGGTTCTTTGTGGA 58.297 40.909 0.00 0.00 0.00 4.02
75 76 4.464069 TTCTTGGTTTGGTTCTTTGTGG 57.536 40.909 0.00 0.00 0.00 4.17
76 77 6.793492 TTTTTCTTGGTTTGGTTCTTTGTG 57.207 33.333 0.00 0.00 0.00 3.33
96 97 7.875554 AGTTTATGTTGGTGTGTCAAACTTTTT 59.124 29.630 0.00 0.00 32.41 1.94
97 98 7.382898 AGTTTATGTTGGTGTGTCAAACTTTT 58.617 30.769 0.00 0.00 32.41 2.27
98 99 6.930731 AGTTTATGTTGGTGTGTCAAACTTT 58.069 32.000 0.00 0.00 32.41 2.66
99 100 6.151985 TGAGTTTATGTTGGTGTGTCAAACTT 59.848 34.615 0.00 0.00 35.51 2.66
100 101 5.650266 TGAGTTTATGTTGGTGTGTCAAACT 59.350 36.000 0.00 0.00 37.43 2.66
101 102 5.885881 TGAGTTTATGTTGGTGTGTCAAAC 58.114 37.500 0.00 0.00 0.00 2.93
102 103 6.707440 ATGAGTTTATGTTGGTGTGTCAAA 57.293 33.333 0.00 0.00 0.00 2.69
103 104 6.707440 AATGAGTTTATGTTGGTGTGTCAA 57.293 33.333 0.00 0.00 0.00 3.18
104 105 7.220740 TCTAATGAGTTTATGTTGGTGTGTCA 58.779 34.615 0.00 0.00 0.00 3.58
105 106 7.667043 TCTAATGAGTTTATGTTGGTGTGTC 57.333 36.000 0.00 0.00 0.00 3.67
106 107 7.336931 GGATCTAATGAGTTTATGTTGGTGTGT 59.663 37.037 0.00 0.00 0.00 3.72
107 108 7.465916 CGGATCTAATGAGTTTATGTTGGTGTG 60.466 40.741 0.00 0.00 0.00 3.82
108 109 6.538742 CGGATCTAATGAGTTTATGTTGGTGT 59.461 38.462 0.00 0.00 0.00 4.16
109 110 6.761242 TCGGATCTAATGAGTTTATGTTGGTG 59.239 38.462 0.00 0.00 0.00 4.17
110 111 6.884832 TCGGATCTAATGAGTTTATGTTGGT 58.115 36.000 0.00 0.00 0.00 3.67
111 112 7.786178 TTCGGATCTAATGAGTTTATGTTGG 57.214 36.000 0.00 0.00 0.00 3.77
132 133 5.769367 TGTCCTAACAGATCCGATTATTCG 58.231 41.667 0.02 0.02 45.08 3.34
146 147 6.553852 AGGTTAGAGAGTTTTCTGTCCTAACA 59.446 38.462 0.00 0.00 40.55 2.41
147 148 6.995364 AGGTTAGAGAGTTTTCTGTCCTAAC 58.005 40.000 0.00 0.00 40.55 2.34
148 149 7.613551 AAGGTTAGAGAGTTTTCTGTCCTAA 57.386 36.000 0.00 0.00 40.55 2.69
149 150 8.750298 CATAAGGTTAGAGAGTTTTCTGTCCTA 58.250 37.037 0.00 0.00 40.55 2.94
150 151 7.310734 CCATAAGGTTAGAGAGTTTTCTGTCCT 60.311 40.741 0.00 0.00 40.55 3.85
151 152 6.819146 CCATAAGGTTAGAGAGTTTTCTGTCC 59.181 42.308 0.00 0.00 40.55 4.02
152 153 6.314152 GCCATAAGGTTAGAGAGTTTTCTGTC 59.686 42.308 0.00 0.00 37.58 3.51
153 154 6.013293 AGCCATAAGGTTAGAGAGTTTTCTGT 60.013 38.462 0.00 0.00 37.19 3.41
154 155 6.410540 AGCCATAAGGTTAGAGAGTTTTCTG 58.589 40.000 0.00 0.00 37.19 3.02
155 156 6.442244 AGAGCCATAAGGTTAGAGAGTTTTCT 59.558 38.462 0.00 0.00 37.19 2.52
156 157 6.536941 CAGAGCCATAAGGTTAGAGAGTTTTC 59.463 42.308 0.00 0.00 37.19 2.29
157 158 6.410540 CAGAGCCATAAGGTTAGAGAGTTTT 58.589 40.000 0.00 0.00 37.19 2.43
158 159 5.627968 GCAGAGCCATAAGGTTAGAGAGTTT 60.628 44.000 0.00 0.00 37.19 2.66
159 160 4.141824 GCAGAGCCATAAGGTTAGAGAGTT 60.142 45.833 0.00 0.00 37.19 3.01
160 161 3.386402 GCAGAGCCATAAGGTTAGAGAGT 59.614 47.826 0.00 0.00 37.19 3.24
161 162 3.988819 GCAGAGCCATAAGGTTAGAGAG 58.011 50.000 0.00 0.00 37.19 3.20
201 202 9.731819 GTCTAGTGATTATCGTGTGAGAATAAA 57.268 33.333 0.00 0.00 36.22 1.40
202 203 8.068380 CGTCTAGTGATTATCGTGTGAGAATAA 58.932 37.037 0.00 0.00 36.22 1.40
203 204 7.440255 TCGTCTAGTGATTATCGTGTGAGAATA 59.560 37.037 0.00 0.00 36.22 1.75
204 205 6.260271 TCGTCTAGTGATTATCGTGTGAGAAT 59.740 38.462 0.00 0.00 38.69 2.40
205 206 5.583457 TCGTCTAGTGATTATCGTGTGAGAA 59.417 40.000 0.00 0.00 0.00 2.87
206 207 5.114081 TCGTCTAGTGATTATCGTGTGAGA 58.886 41.667 0.00 0.00 0.00 3.27
207 208 5.405331 TCGTCTAGTGATTATCGTGTGAG 57.595 43.478 0.00 0.00 0.00 3.51
208 209 5.526111 TCATCGTCTAGTGATTATCGTGTGA 59.474 40.000 0.00 0.00 0.00 3.58
209 210 5.621634 GTCATCGTCTAGTGATTATCGTGTG 59.378 44.000 0.00 0.00 0.00 3.82
210 211 5.558463 CGTCATCGTCTAGTGATTATCGTGT 60.558 44.000 0.00 0.00 0.00 4.49
211 212 4.841306 CGTCATCGTCTAGTGATTATCGTG 59.159 45.833 0.00 0.00 0.00 4.35
212 213 4.083961 CCGTCATCGTCTAGTGATTATCGT 60.084 45.833 0.00 0.00 35.01 3.73
213 214 4.151867 TCCGTCATCGTCTAGTGATTATCG 59.848 45.833 0.00 0.76 35.01 2.92
214 215 5.408909 TCTCCGTCATCGTCTAGTGATTATC 59.591 44.000 0.00 0.00 35.01 1.75
215 216 5.306394 TCTCCGTCATCGTCTAGTGATTAT 58.694 41.667 0.00 0.00 35.01 1.28
216 217 4.700700 TCTCCGTCATCGTCTAGTGATTA 58.299 43.478 0.00 0.00 35.01 1.75
217 218 3.542648 TCTCCGTCATCGTCTAGTGATT 58.457 45.455 0.00 0.00 35.01 2.57
218 219 3.195471 TCTCCGTCATCGTCTAGTGAT 57.805 47.619 0.00 0.00 35.01 3.06
219 220 2.685850 TCTCCGTCATCGTCTAGTGA 57.314 50.000 0.00 0.00 35.01 3.41
220 221 3.972950 ATTCTCCGTCATCGTCTAGTG 57.027 47.619 0.00 0.00 35.01 2.74
221 222 7.444792 ACTTTATATTCTCCGTCATCGTCTAGT 59.555 37.037 0.00 0.00 35.01 2.57
222 223 7.808672 ACTTTATATTCTCCGTCATCGTCTAG 58.191 38.462 0.00 0.00 35.01 2.43
223 224 7.741027 ACTTTATATTCTCCGTCATCGTCTA 57.259 36.000 0.00 0.00 35.01 2.59
224 225 6.636562 ACTTTATATTCTCCGTCATCGTCT 57.363 37.500 0.00 0.00 35.01 4.18
225 226 7.140048 AGAACTTTATATTCTCCGTCATCGTC 58.860 38.462 0.00 0.00 30.33 4.20
226 227 7.040473 AGAACTTTATATTCTCCGTCATCGT 57.960 36.000 0.00 0.00 30.33 3.73
227 228 7.648112 TCAAGAACTTTATATTCTCCGTCATCG 59.352 37.037 0.00 0.00 35.31 3.84
228 229 8.873215 TCAAGAACTTTATATTCTCCGTCATC 57.127 34.615 0.00 0.00 35.31 2.92
229 230 9.319143 CTTCAAGAACTTTATATTCTCCGTCAT 57.681 33.333 0.00 0.00 35.31 3.06
230 231 8.528643 TCTTCAAGAACTTTATATTCTCCGTCA 58.471 33.333 0.00 0.00 35.31 4.35
231 232 8.928270 TCTTCAAGAACTTTATATTCTCCGTC 57.072 34.615 0.00 0.00 35.31 4.79
232 233 9.319143 CATCTTCAAGAACTTTATATTCTCCGT 57.681 33.333 0.00 0.00 35.31 4.69
233 234 9.534565 TCATCTTCAAGAACTTTATATTCTCCG 57.465 33.333 0.00 0.00 35.31 4.63
240 241 9.151471 CGACCTTTCATCTTCAAGAACTTTATA 57.849 33.333 0.00 0.00 0.00 0.98
241 242 7.361286 GCGACCTTTCATCTTCAAGAACTTTAT 60.361 37.037 0.00 0.00 0.00 1.40
242 243 6.073222 GCGACCTTTCATCTTCAAGAACTTTA 60.073 38.462 0.00 0.00 0.00 1.85
243 244 5.278022 GCGACCTTTCATCTTCAAGAACTTT 60.278 40.000 0.00 0.00 0.00 2.66
244 245 4.214332 GCGACCTTTCATCTTCAAGAACTT 59.786 41.667 0.00 0.00 0.00 2.66
245 246 3.748568 GCGACCTTTCATCTTCAAGAACT 59.251 43.478 0.00 0.00 0.00 3.01
246 247 3.120165 GGCGACCTTTCATCTTCAAGAAC 60.120 47.826 0.00 0.00 0.00 3.01
247 248 3.074412 GGCGACCTTTCATCTTCAAGAA 58.926 45.455 0.00 0.00 0.00 2.52
248 249 2.699954 GGCGACCTTTCATCTTCAAGA 58.300 47.619 0.00 0.00 0.00 3.02
263 264 2.432628 CGTTGAGAGGTGGGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
264 265 4.373116 GCGTTGAGAGGTGGGCGA 62.373 66.667 0.00 0.00 0.00 5.54
266 267 3.842925 TTGGCGTTGAGAGGTGGGC 62.843 63.158 0.00 0.00 0.00 5.36
267 268 0.821711 TTTTGGCGTTGAGAGGTGGG 60.822 55.000 0.00 0.00 0.00 4.61
268 269 1.247567 ATTTTGGCGTTGAGAGGTGG 58.752 50.000 0.00 0.00 0.00 4.61
269 270 3.052036 CAAATTTTGGCGTTGAGAGGTG 58.948 45.455 0.97 0.00 0.00 4.00
270 271 2.545742 GCAAATTTTGGCGTTGAGAGGT 60.546 45.455 10.96 0.00 0.00 3.85
271 272 2.061028 GCAAATTTTGGCGTTGAGAGG 58.939 47.619 10.96 0.00 0.00 3.69
280 281 3.117812 CCCGGCGCAAATTTTGGC 61.118 61.111 10.83 11.42 0.00 4.52
281 282 3.117812 GCCCGGCGCAAATTTTGG 61.118 61.111 10.83 0.00 37.47 3.28
312 313 0.178990 AACCAAAGAAGGCCTTCGCT 60.179 50.000 34.27 24.63 43.97 4.93
313 314 0.673985 AAACCAAAGAAGGCCTTCGC 59.326 50.000 34.27 17.18 43.97 4.70
314 315 1.000274 CCAAACCAAAGAAGGCCTTCG 60.000 52.381 34.27 24.11 43.97 3.79
315 316 2.297315 CTCCAAACCAAAGAAGGCCTTC 59.703 50.000 34.25 34.25 39.78 3.46
316 317 2.319844 CTCCAAACCAAAGAAGGCCTT 58.680 47.619 20.65 20.65 36.47 4.35
317 318 1.481242 CCTCCAAACCAAAGAAGGCCT 60.481 52.381 0.00 0.00 0.00 5.19
318 319 0.969149 CCTCCAAACCAAAGAAGGCC 59.031 55.000 0.00 0.00 0.00 5.19
319 320 1.995376 TCCTCCAAACCAAAGAAGGC 58.005 50.000 0.00 0.00 0.00 4.35
320 321 5.551305 AAATTCCTCCAAACCAAAGAAGG 57.449 39.130 0.00 0.00 0.00 3.46
321 322 9.860898 CTATAAAATTCCTCCAAACCAAAGAAG 57.139 33.333 0.00 0.00 0.00 2.85
322 323 8.811994 CCTATAAAATTCCTCCAAACCAAAGAA 58.188 33.333 0.00 0.00 0.00 2.52
323 324 8.174085 TCCTATAAAATTCCTCCAAACCAAAGA 58.826 33.333 0.00 0.00 0.00 2.52
324 325 8.361169 TCCTATAAAATTCCTCCAAACCAAAG 57.639 34.615 0.00 0.00 0.00 2.77
325 326 8.909423 ATCCTATAAAATTCCTCCAAACCAAA 57.091 30.769 0.00 0.00 0.00 3.28
363 364 9.104410 ACCAAAGGGCTCTAAAGGAAAAATTCC 62.104 40.741 5.94 0.75 44.02 3.01
364 365 6.166279 CCAAAGGGCTCTAAAGGAAAAATTC 58.834 40.000 0.00 0.00 0.00 2.17
365 366 5.606749 ACCAAAGGGCTCTAAAGGAAAAATT 59.393 36.000 5.94 0.00 37.90 1.82
366 367 5.155161 ACCAAAGGGCTCTAAAGGAAAAAT 58.845 37.500 5.94 0.00 37.90 1.82
367 368 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
368 369 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
369 370 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
370 371 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
371 372 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
372 373 3.084786 CTGAACCAAAGGGCTCTAAAGG 58.915 50.000 0.00 0.00 37.90 3.11
373 374 4.006319 CTCTGAACCAAAGGGCTCTAAAG 58.994 47.826 0.00 0.00 37.90 1.85
374 375 3.650942 TCTCTGAACCAAAGGGCTCTAAA 59.349 43.478 0.00 0.00 37.90 1.85
375 376 3.248024 TCTCTGAACCAAAGGGCTCTAA 58.752 45.455 0.00 0.00 37.90 2.10
376 377 2.902608 TCTCTGAACCAAAGGGCTCTA 58.097 47.619 0.00 0.00 37.90 2.43
377 378 1.734655 TCTCTGAACCAAAGGGCTCT 58.265 50.000 0.00 0.00 37.90 4.09
378 379 2.568623 TTCTCTGAACCAAAGGGCTC 57.431 50.000 0.00 0.00 37.90 4.70
379 380 3.160269 CATTTCTCTGAACCAAAGGGCT 58.840 45.455 0.00 0.00 37.90 5.19
380 381 2.232208 CCATTTCTCTGAACCAAAGGGC 59.768 50.000 0.00 0.00 37.90 5.19
381 382 3.766545 TCCATTTCTCTGAACCAAAGGG 58.233 45.455 0.00 0.00 41.29 3.95
382 383 5.990120 AATCCATTTCTCTGAACCAAAGG 57.010 39.130 0.00 0.00 0.00 3.11
383 384 7.693969 AGTAATCCATTTCTCTGAACCAAAG 57.306 36.000 0.00 0.00 0.00 2.77
384 385 9.753674 AATAGTAATCCATTTCTCTGAACCAAA 57.246 29.630 0.00 0.00 0.00 3.28
385 386 9.396022 GAATAGTAATCCATTTCTCTGAACCAA 57.604 33.333 0.00 0.00 0.00 3.67
386 387 7.993183 GGAATAGTAATCCATTTCTCTGAACCA 59.007 37.037 0.00 0.00 36.92 3.67
387 388 8.214364 AGGAATAGTAATCCATTTCTCTGAACC 58.786 37.037 7.02 0.00 39.55 3.62
390 391 9.434275 TGTAGGAATAGTAATCCATTTCTCTGA 57.566 33.333 7.02 0.00 39.55 3.27
419 420 6.944290 GGAATGTGGAGGATATGAATCAATCA 59.056 38.462 0.00 0.00 43.67 2.57
420 421 6.944290 TGGAATGTGGAGGATATGAATCAATC 59.056 38.462 0.00 0.00 33.41 2.67
421 422 6.855667 TGGAATGTGGAGGATATGAATCAAT 58.144 36.000 0.00 0.00 33.41 2.57
422 423 6.264771 TGGAATGTGGAGGATATGAATCAA 57.735 37.500 0.00 0.00 33.41 2.57
423 424 5.910355 TGGAATGTGGAGGATATGAATCA 57.090 39.130 0.00 0.00 33.41 2.57
424 425 7.000472 TCTTTGGAATGTGGAGGATATGAATC 59.000 38.462 0.00 0.00 0.00 2.52
425 426 6.914665 TCTTTGGAATGTGGAGGATATGAAT 58.085 36.000 0.00 0.00 0.00 2.57
426 427 6.325993 TCTTTGGAATGTGGAGGATATGAA 57.674 37.500 0.00 0.00 0.00 2.57
427 428 5.974156 TCTTTGGAATGTGGAGGATATGA 57.026 39.130 0.00 0.00 0.00 2.15
428 429 7.408756 TTTTCTTTGGAATGTGGAGGATATG 57.591 36.000 0.00 0.00 0.00 1.78
429 430 8.613922 ATTTTTCTTTGGAATGTGGAGGATAT 57.386 30.769 0.00 0.00 0.00 1.63
430 431 9.540538 TTATTTTTCTTTGGAATGTGGAGGATA 57.459 29.630 0.00 0.00 0.00 2.59
431 432 6.940430 ATTTTTCTTTGGAATGTGGAGGAT 57.060 33.333 0.00 0.00 0.00 3.24
432 433 7.847711 TTATTTTTCTTTGGAATGTGGAGGA 57.152 32.000 0.00 0.00 0.00 3.71
433 434 7.930865 TGTTTATTTTTCTTTGGAATGTGGAGG 59.069 33.333 0.00 0.00 0.00 4.30
434 435 8.885494 TGTTTATTTTTCTTTGGAATGTGGAG 57.115 30.769 0.00 0.00 0.00 3.86
435 436 9.270640 CATGTTTATTTTTCTTTGGAATGTGGA 57.729 29.630 0.00 0.00 0.00 4.02
436 437 9.270640 TCATGTTTATTTTTCTTTGGAATGTGG 57.729 29.630 0.00 0.00 0.00 4.17
438 439 8.992073 GCTCATGTTTATTTTTCTTTGGAATGT 58.008 29.630 0.00 0.00 0.00 2.71
439 440 8.445493 GGCTCATGTTTATTTTTCTTTGGAATG 58.555 33.333 0.00 0.00 0.00 2.67
440 441 8.377799 AGGCTCATGTTTATTTTTCTTTGGAAT 58.622 29.630 0.00 0.00 0.00 3.01
441 442 7.734942 AGGCTCATGTTTATTTTTCTTTGGAA 58.265 30.769 0.00 0.00 0.00 3.53
442 443 7.301868 AGGCTCATGTTTATTTTTCTTTGGA 57.698 32.000 0.00 0.00 0.00 3.53
447 448 9.461312 TGTGTATAGGCTCATGTTTATTTTTCT 57.539 29.630 0.00 0.00 0.00 2.52
451 452 8.632679 CCATTGTGTATAGGCTCATGTTTATTT 58.367 33.333 0.00 0.00 0.00 1.40
452 453 7.998383 TCCATTGTGTATAGGCTCATGTTTATT 59.002 33.333 0.00 0.00 0.00 1.40
453 454 7.517320 TCCATTGTGTATAGGCTCATGTTTAT 58.483 34.615 0.00 0.00 0.00 1.40
454 455 6.894682 TCCATTGTGTATAGGCTCATGTTTA 58.105 36.000 0.00 0.00 0.00 2.01
455 456 5.754782 TCCATTGTGTATAGGCTCATGTTT 58.245 37.500 0.00 0.00 0.00 2.83
456 457 5.372343 TCCATTGTGTATAGGCTCATGTT 57.628 39.130 0.00 0.00 0.00 2.71
457 458 5.372343 TTCCATTGTGTATAGGCTCATGT 57.628 39.130 0.00 0.00 0.00 3.21
458 459 6.698008 TTTTCCATTGTGTATAGGCTCATG 57.302 37.500 0.00 0.00 0.00 3.07
459 460 7.902920 ATTTTTCCATTGTGTATAGGCTCAT 57.097 32.000 0.00 0.00 0.00 2.90
460 461 7.716799 AATTTTTCCATTGTGTATAGGCTCA 57.283 32.000 0.00 0.00 0.00 4.26
461 462 8.470002 AGAAATTTTTCCATTGTGTATAGGCTC 58.530 33.333 0.00 0.00 37.92 4.70
462 463 8.366359 AGAAATTTTTCCATTGTGTATAGGCT 57.634 30.769 0.00 0.00 37.92 4.58
468 469 9.585099 GCATCATAGAAATTTTTCCATTGTGTA 57.415 29.630 0.00 0.00 37.92 2.90
469 470 7.276218 CGCATCATAGAAATTTTTCCATTGTGT 59.724 33.333 0.00 0.00 37.92 3.72
470 471 7.488792 TCGCATCATAGAAATTTTTCCATTGTG 59.511 33.333 0.00 0.00 37.92 3.33
471 472 7.546358 TCGCATCATAGAAATTTTTCCATTGT 58.454 30.769 0.00 0.00 37.92 2.71
472 473 7.990541 TCGCATCATAGAAATTTTTCCATTG 57.009 32.000 0.00 0.00 37.92 2.82
473 474 9.252962 GATTCGCATCATAGAAATTTTTCCATT 57.747 29.630 0.00 0.00 37.92 3.16
474 475 8.415553 TGATTCGCATCATAGAAATTTTTCCAT 58.584 29.630 0.00 0.00 34.74 3.41
475 476 7.770201 TGATTCGCATCATAGAAATTTTTCCA 58.230 30.769 0.00 0.00 34.74 3.53
476 477 8.633075 TTGATTCGCATCATAGAAATTTTTCC 57.367 30.769 0.00 0.00 39.28 3.13
479 480 9.806203 TCATTTGATTCGCATCATAGAAATTTT 57.194 25.926 0.00 0.00 39.28 1.82
480 481 9.241317 GTCATTTGATTCGCATCATAGAAATTT 57.759 29.630 0.00 0.00 39.28 1.82
481 482 8.407832 TGTCATTTGATTCGCATCATAGAAATT 58.592 29.630 0.00 0.00 39.28 1.82
482 483 7.933396 TGTCATTTGATTCGCATCATAGAAAT 58.067 30.769 0.00 0.00 39.28 2.17
483 484 7.319142 TGTCATTTGATTCGCATCATAGAAA 57.681 32.000 0.00 0.00 39.28 2.52
484 485 6.923928 TGTCATTTGATTCGCATCATAGAA 57.076 33.333 0.00 0.00 39.28 2.10
485 486 8.782339 ATATGTCATTTGATTCGCATCATAGA 57.218 30.769 0.00 0.00 39.28 1.98
486 487 8.880750 AGATATGTCATTTGATTCGCATCATAG 58.119 33.333 0.00 0.00 39.28 2.23
487 488 8.782339 AGATATGTCATTTGATTCGCATCATA 57.218 30.769 0.00 0.00 39.28 2.15
488 489 7.683437 AGATATGTCATTTGATTCGCATCAT 57.317 32.000 0.00 0.00 39.28 2.45
489 490 7.500720 AAGATATGTCATTTGATTCGCATCA 57.499 32.000 0.00 0.00 37.67 3.07
490 491 8.792831 AAAAGATATGTCATTTGATTCGCATC 57.207 30.769 0.00 0.00 0.00 3.91
491 492 7.864379 GGAAAAGATATGTCATTTGATTCGCAT 59.136 33.333 0.00 0.00 0.00 4.73
492 493 7.067372 AGGAAAAGATATGTCATTTGATTCGCA 59.933 33.333 0.00 0.00 0.00 5.10
493 494 7.420800 AGGAAAAGATATGTCATTTGATTCGC 58.579 34.615 0.00 0.00 0.00 4.70
539 540 8.207545 GGAGGAGTAGAAAATAAGATGACATGT 58.792 37.037 0.00 0.00 0.00 3.21
540 541 7.659390 GGGAGGAGTAGAAAATAAGATGACATG 59.341 40.741 0.00 0.00 0.00 3.21
541 542 7.472100 CGGGAGGAGTAGAAAATAAGATGACAT 60.472 40.741 0.00 0.00 0.00 3.06
542 543 6.183360 CGGGAGGAGTAGAAAATAAGATGACA 60.183 42.308 0.00 0.00 0.00 3.58
543 544 6.183360 ACGGGAGGAGTAGAAAATAAGATGAC 60.183 42.308 0.00 0.00 0.00 3.06
544 545 5.897824 ACGGGAGGAGTAGAAAATAAGATGA 59.102 40.000 0.00 0.00 0.00 2.92
545 546 6.163135 ACGGGAGGAGTAGAAAATAAGATG 57.837 41.667 0.00 0.00 0.00 2.90
546 547 6.183360 GGAACGGGAGGAGTAGAAAATAAGAT 60.183 42.308 0.00 0.00 0.00 2.40
547 548 5.128335 GGAACGGGAGGAGTAGAAAATAAGA 59.872 44.000 0.00 0.00 0.00 2.10
548 549 5.128991 AGGAACGGGAGGAGTAGAAAATAAG 59.871 44.000 0.00 0.00 0.00 1.73
549 550 5.028131 AGGAACGGGAGGAGTAGAAAATAA 58.972 41.667 0.00 0.00 0.00 1.40
550 551 4.617593 AGGAACGGGAGGAGTAGAAAATA 58.382 43.478 0.00 0.00 0.00 1.40
551 552 3.451890 AGGAACGGGAGGAGTAGAAAAT 58.548 45.455 0.00 0.00 0.00 1.82
552 553 2.898662 AGGAACGGGAGGAGTAGAAAA 58.101 47.619 0.00 0.00 0.00 2.29
553 554 2.617840 AGGAACGGGAGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
554 555 3.744940 TTAGGAACGGGAGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
555 556 3.744940 TTTAGGAACGGGAGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
556 557 7.450944 ACTTATATTTAGGAACGGGAGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
557 558 7.300658 ACTTATATTTAGGAACGGGAGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
558 559 6.141790 ACTTATATTTAGGAACGGGAGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
559 560 6.494146 AGACTTATATTTAGGAACGGGAGGAG 59.506 42.308 0.00 0.00 0.00 3.69
560 561 6.379579 AGACTTATATTTAGGAACGGGAGGA 58.620 40.000 0.00 0.00 0.00 3.71
561 562 6.667558 AGACTTATATTTAGGAACGGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
562 563 7.985752 ACAAAGACTTATATTTAGGAACGGGAG 59.014 37.037 0.00 0.00 0.00 4.30
563 564 7.854337 ACAAAGACTTATATTTAGGAACGGGA 58.146 34.615 0.00 0.00 0.00 5.14
564 565 9.257651 CTACAAAGACTTATATTTAGGAACGGG 57.742 37.037 0.00 0.00 0.00 5.28
579 580 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
580 581 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
581 582 8.254508 AGTCCATAGTGAAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 0.00 3.01
582 583 8.367660 AGTCCATAGTGAAATCTCTACAAAGA 57.632 34.615 0.00 0.00 0.00 2.52
583 584 9.522804 GTAGTCCATAGTGAAATCTCTACAAAG 57.477 37.037 0.00 0.00 0.00 2.77
584 585 9.031537 TGTAGTCCATAGTGAAATCTCTACAAA 57.968 33.333 0.00 0.00 34.46 2.83
585 586 8.589701 TGTAGTCCATAGTGAAATCTCTACAA 57.410 34.615 0.00 0.00 34.46 2.41
586 587 8.768501 ATGTAGTCCATAGTGAAATCTCTACA 57.231 34.615 0.00 0.00 39.19 2.74
588 589 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
589 590 7.720074 TCGTATGTAGTCCATAGTGAAATCTCT 59.280 37.037 0.00 0.00 36.71 3.10
590 591 7.872881 TCGTATGTAGTCCATAGTGAAATCTC 58.127 38.462 0.00 0.00 36.71 2.75
591 592 7.818997 TCGTATGTAGTCCATAGTGAAATCT 57.181 36.000 0.00 0.00 36.71 2.40
592 593 7.115095 GCTTCGTATGTAGTCCATAGTGAAATC 59.885 40.741 0.00 0.00 36.71 2.17
593 594 6.924060 GCTTCGTATGTAGTCCATAGTGAAAT 59.076 38.462 0.00 0.00 36.71 2.17
594 595 6.127563 TGCTTCGTATGTAGTCCATAGTGAAA 60.128 38.462 0.00 0.00 36.71 2.69
595 596 5.358725 TGCTTCGTATGTAGTCCATAGTGAA 59.641 40.000 0.00 0.00 36.71 3.18
596 597 4.885325 TGCTTCGTATGTAGTCCATAGTGA 59.115 41.667 0.00 0.00 36.71 3.41
597 598 5.183014 TGCTTCGTATGTAGTCCATAGTG 57.817 43.478 0.00 0.00 36.71 2.74
598 599 5.847111 TTGCTTCGTATGTAGTCCATAGT 57.153 39.130 0.00 0.00 36.71 2.12
599 600 7.224753 ACATTTTGCTTCGTATGTAGTCCATAG 59.775 37.037 0.00 0.00 36.71 2.23
600 601 7.045416 ACATTTTGCTTCGTATGTAGTCCATA 58.955 34.615 0.00 0.00 34.86 2.74
601 602 5.880332 ACATTTTGCTTCGTATGTAGTCCAT 59.120 36.000 0.00 0.00 37.58 3.41
602 603 5.242434 ACATTTTGCTTCGTATGTAGTCCA 58.758 37.500 0.00 0.00 29.93 4.02
603 604 5.581085 AGACATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 31.76 3.85
604 605 6.310467 TCAGACATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 31.76 2.59
605 606 6.163476 TCAGACATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 31.76 2.73
606 607 6.647212 TCAGACATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 31.76 2.74
607 608 7.549134 AGATTCAGACATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 31.76 2.29
608 609 5.940192 TTCAGACATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 34.14 2.29
609 610 6.779117 AGATTCAGACATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
610 611 6.992063 AGATTCAGACATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
611 612 9.031360 GTATAGATTCAGACATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
612 613 6.992063 ATAGATTCAGACATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
613 614 8.136057 AGTATAGATTCAGACATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
614 615 9.323985 AGAGTATAGATTCAGACATTTTGCTTC 57.676 33.333 0.00 0.00 0.00 3.86
636 637 8.982685 CGAATGTATGTAGATGCATTTTAGAGT 58.017 33.333 15.62 0.00 42.85 3.24
637 638 8.982685 ACGAATGTATGTAGATGCATTTTAGAG 58.017 33.333 15.62 8.96 42.85 2.43
638 639 8.887036 ACGAATGTATGTAGATGCATTTTAGA 57.113 30.769 15.62 0.00 42.85 2.10
654 655 9.981114 TTCACTATGAATCACATACGAATGTAT 57.019 29.630 0.00 0.00 36.45 2.29
655 656 9.810545 TTTCACTATGAATCACATACGAATGTA 57.189 29.630 0.00 0.00 39.06 2.29
656 657 8.604035 GTTTCACTATGAATCACATACGAATGT 58.396 33.333 0.00 0.00 40.46 2.71
657 658 8.820933 AGTTTCACTATGAATCACATACGAATG 58.179 33.333 0.00 0.00 36.11 2.67
658 659 8.948631 AGTTTCACTATGAATCACATACGAAT 57.051 30.769 0.00 0.00 36.11 3.34
659 660 8.251026 AGAGTTTCACTATGAATCACATACGAA 58.749 33.333 0.00 0.00 36.11 3.85
660 661 7.772166 AGAGTTTCACTATGAATCACATACGA 58.228 34.615 0.00 0.00 36.11 3.43
661 662 7.993821 AGAGTTTCACTATGAATCACATACG 57.006 36.000 0.00 0.00 36.11 3.06
662 663 9.803315 TGTAGAGTTTCACTATGAATCACATAC 57.197 33.333 0.00 3.63 36.11 2.39
664 665 9.725019 TTTGTAGAGTTTCACTATGAATCACAT 57.275 29.630 0.00 0.00 36.11 3.21
665 666 9.208022 CTTTGTAGAGTTTCACTATGAATCACA 57.792 33.333 0.00 0.00 36.11 3.58
666 667 9.424319 TCTTTGTAGAGTTTCACTATGAATCAC 57.576 33.333 0.00 0.00 36.11 3.06
667 668 9.424319 GTCTTTGTAGAGTTTCACTATGAATCA 57.576 33.333 0.00 0.00 36.11 2.57
668 669 9.646427 AGTCTTTGTAGAGTTTCACTATGAATC 57.354 33.333 0.00 0.00 36.11 2.52
691 692 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
692 693 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
696 697 7.954620 ACTTATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
698 699 6.141790 ACTTATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
701 702 4.803329 ACTTATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
703 704 4.750021 AAACTTATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
726 727 9.520515 GGCCTCTTTGGATTATCATAAGAATAA 57.479 33.333 0.00 0.00 38.35 1.40
727 728 7.824289 CGGCCTCTTTGGATTATCATAAGAATA 59.176 37.037 0.00 0.00 38.35 1.75
728 729 6.656693 CGGCCTCTTTGGATTATCATAAGAAT 59.343 38.462 0.00 0.00 38.35 2.40
729 730 5.997746 CGGCCTCTTTGGATTATCATAAGAA 59.002 40.000 0.00 0.00 38.35 2.52
731 732 5.551233 TCGGCCTCTTTGGATTATCATAAG 58.449 41.667 0.00 0.00 38.35 1.73
733 734 5.560722 TTCGGCCTCTTTGGATTATCATA 57.439 39.130 0.00 0.00 38.35 2.15
734 735 4.437682 TTCGGCCTCTTTGGATTATCAT 57.562 40.909 0.00 0.00 38.35 2.45
735 736 3.924114 TTCGGCCTCTTTGGATTATCA 57.076 42.857 0.00 0.00 38.35 2.15
736 737 5.066593 AGATTTCGGCCTCTTTGGATTATC 58.933 41.667 0.00 0.00 38.35 1.75
737 738 5.053978 AGATTTCGGCCTCTTTGGATTAT 57.946 39.130 0.00 0.00 38.35 1.28
738 739 4.503714 AGATTTCGGCCTCTTTGGATTA 57.496 40.909 0.00 0.00 38.35 1.75
740 741 3.019564 CAAGATTTCGGCCTCTTTGGAT 58.980 45.455 0.00 0.00 38.35 3.41
741 742 2.436417 CAAGATTTCGGCCTCTTTGGA 58.564 47.619 0.00 0.00 38.35 3.53
743 744 2.436417 TCCAAGATTTCGGCCTCTTTG 58.564 47.619 0.00 0.00 29.34 2.77
744 745 2.820197 GTTCCAAGATTTCGGCCTCTTT 59.180 45.455 0.00 0.00 29.34 2.52
745 746 2.437413 GTTCCAAGATTTCGGCCTCTT 58.563 47.619 0.00 0.00 31.97 2.85
746 747 1.340114 GGTTCCAAGATTTCGGCCTCT 60.340 52.381 0.00 0.00 0.00 3.69
747 748 1.095600 GGTTCCAAGATTTCGGCCTC 58.904 55.000 0.00 0.00 0.00 4.70
748 749 0.323451 GGGTTCCAAGATTTCGGCCT 60.323 55.000 0.00 0.00 0.00 5.19
749 750 0.323451 AGGGTTCCAAGATTTCGGCC 60.323 55.000 0.00 0.00 0.00 6.13
750 751 1.545841 AAGGGTTCCAAGATTTCGGC 58.454 50.000 0.00 0.00 0.00 5.54
773 1011 4.500116 GACCGGCTCTCCACGCTC 62.500 72.222 0.00 0.00 0.00 5.03
776 1014 4.135153 CTGGACCGGCTCTCCACG 62.135 72.222 8.17 2.22 33.97 4.94
780 1018 0.108567 GAGAAACTGGACCGGCTCTC 60.109 60.000 14.35 14.35 0.00 3.20
910 1149 3.089874 TGGGGAGCGGAGGGAATG 61.090 66.667 0.00 0.00 0.00 2.67
1066 1320 1.225908 CATGAACGTTAACCGCGCC 60.226 57.895 0.00 0.00 41.42 6.53
1070 1324 1.659098 GAGAGCCATGAACGTTAACCG 59.341 52.381 0.00 0.00 44.03 4.44
1142 1399 1.527433 GGAGGCCTTGAACCTGCAAC 61.527 60.000 6.77 0.00 44.51 4.17
1143 1400 1.228552 GGAGGCCTTGAACCTGCAA 60.229 57.895 6.77 0.00 44.51 4.08
1227 1484 1.286248 GAGGGAGGGCTTACAGGAAA 58.714 55.000 0.00 0.00 0.00 3.13
1272 1529 9.512435 TTTCGAAAATTATTAGAGTACGGAGAG 57.488 33.333 8.44 0.00 0.00 3.20
1485 1747 5.715279 GCCTTGGTAACCTAGAAGGAAAAAT 59.285 40.000 9.29 0.00 37.67 1.82
1486 1748 5.074804 GCCTTGGTAACCTAGAAGGAAAAA 58.925 41.667 9.29 0.00 37.67 1.94
1488 1750 3.307199 CGCCTTGGTAACCTAGAAGGAAA 60.307 47.826 9.29 0.00 37.67 3.13
1495 1758 1.153229 GGCCGCCTTGGTAACCTAG 60.153 63.158 0.71 0.00 41.21 3.02
1580 1843 2.426738 CACAGGAGCAACTTTCCACAAA 59.573 45.455 0.00 0.00 37.18 2.83
1598 1861 3.938109 TGGCAAGTATAACGGCACA 57.062 47.368 0.00 0.00 0.00 4.57
1619 1883 6.775708 ACAACCTAGTAGTATTTTGGCAAGA 58.224 36.000 0.00 0.00 0.00 3.02
1798 2072 2.719798 CGGCAAATATAACAGCACTGC 58.280 47.619 0.00 0.00 0.00 4.40
1805 2079 5.899120 TTTGGTAAGCGGCAAATATAACA 57.101 34.783 1.45 0.00 0.00 2.41
1984 2263 3.303791 CCTTCACCAAACAGACGCTAAAC 60.304 47.826 0.00 0.00 0.00 2.01
2025 2305 2.689983 AGGCATGCATTAACCAGTTAGC 59.310 45.455 21.36 2.00 0.00 3.09
2103 2383 4.497291 AACACTACCTTCTTGTTCACCA 57.503 40.909 0.00 0.00 0.00 4.17
2135 2415 8.251721 AGTATAAGCTTTACGTCACAAGATTCT 58.748 33.333 3.20 3.58 31.30 2.40
2288 2569 7.850982 GCGATGCATAAATTTTATATACCTCGG 59.149 37.037 0.00 0.00 0.00 4.63
2360 2641 8.879759 CGATAAGACAACCAAACATATGTTAGT 58.120 33.333 21.07 17.68 37.25 2.24
2519 2800 4.437587 ATGCCACAGCCCAGGAGC 62.438 66.667 0.00 0.00 38.69 4.70
2561 2842 5.048921 AGGGTTTTAAGCTTTTCTTCGCTAC 60.049 40.000 3.20 0.00 34.96 3.58
2732 3014 1.000506 AGCAAGTGCAGCAGGAAAATG 59.999 47.619 6.00 0.00 45.16 2.32
2736 3021 0.604780 GAGAGCAAGTGCAGCAGGAA 60.605 55.000 6.00 0.00 45.16 3.36
2755 3040 4.519191 AAAAATTGCTGCACAAAACTCG 57.481 36.364 0.00 0.00 42.86 4.18
2778 3063 9.612066 CAATTGGGCACAACCTTAATAAATATT 57.388 29.630 1.86 0.00 39.87 1.28
2779 3064 8.986991 TCAATTGGGCACAACCTTAATAAATAT 58.013 29.630 1.86 0.00 39.87 1.28
2791 3076 3.259123 AGGAGAAATCAATTGGGCACAAC 59.741 43.478 1.86 0.00 39.87 3.32
2805 3090 5.825593 TTGGTCAACTACAGAGGAGAAAT 57.174 39.130 0.00 0.00 0.00 2.17
2880 3252 6.674519 GCATCGATTTTTACATCCTGTCGAAA 60.675 38.462 0.00 0.00 39.61 3.46
2883 3255 4.271049 AGCATCGATTTTTACATCCTGTCG 59.729 41.667 0.00 0.00 0.00 4.35
2920 3292 1.817941 GTCACACAACCACCAGCGT 60.818 57.895 0.00 0.00 0.00 5.07
2964 3336 5.231147 CAGAACGGAAATTTTCTCGCAAAAA 59.769 36.000 15.38 0.00 29.23 1.94
2965 3337 4.737765 CAGAACGGAAATTTTCTCGCAAAA 59.262 37.500 15.38 0.00 29.23 2.44
2966 3338 4.201970 ACAGAACGGAAATTTTCTCGCAAA 60.202 37.500 15.38 0.00 29.23 3.68
2967 3339 3.314080 ACAGAACGGAAATTTTCTCGCAA 59.686 39.130 15.38 0.00 29.23 4.85
2970 3342 6.523201 CCATTAACAGAACGGAAATTTTCTCG 59.477 38.462 8.93 12.15 29.23 4.04
2971 3343 6.308041 GCCATTAACAGAACGGAAATTTTCTC 59.692 38.462 8.93 0.00 29.23 2.87
2972 3344 6.156519 GCCATTAACAGAACGGAAATTTTCT 58.843 36.000 8.93 0.00 32.02 2.52
2973 3345 5.923684 TGCCATTAACAGAACGGAAATTTTC 59.076 36.000 0.24 0.24 0.00 2.29
2974 3346 5.848406 TGCCATTAACAGAACGGAAATTTT 58.152 33.333 0.00 0.00 0.00 1.82
2975 3347 5.010617 ACTGCCATTAACAGAACGGAAATTT 59.989 36.000 0.00 0.00 38.55 1.82
2976 3348 4.522789 ACTGCCATTAACAGAACGGAAATT 59.477 37.500 0.00 0.00 38.55 1.82
2977 3349 4.079253 ACTGCCATTAACAGAACGGAAAT 58.921 39.130 0.00 0.00 38.55 2.17
2979 3351 3.134574 ACTGCCATTAACAGAACGGAA 57.865 42.857 0.00 0.00 38.55 4.30
2981 3353 3.331150 TGTACTGCCATTAACAGAACGG 58.669 45.455 0.00 0.00 38.55 4.44
2982 3354 4.665645 CGTTGTACTGCCATTAACAGAACG 60.666 45.833 0.00 0.00 36.90 3.95
2983 3355 4.449743 TCGTTGTACTGCCATTAACAGAAC 59.550 41.667 0.00 0.00 38.55 3.01
2984 3356 4.633175 TCGTTGTACTGCCATTAACAGAA 58.367 39.130 0.00 0.00 38.55 3.02
2985 3357 4.260139 TCGTTGTACTGCCATTAACAGA 57.740 40.909 0.00 0.00 38.55 3.41
2986 3358 5.351233 TTTCGTTGTACTGCCATTAACAG 57.649 39.130 0.00 0.00 41.08 3.16
2987 3359 5.752892 TTTTCGTTGTACTGCCATTAACA 57.247 34.783 0.00 0.00 0.00 2.41
2988 3360 6.375377 TGATTTTCGTTGTACTGCCATTAAC 58.625 36.000 0.00 0.00 0.00 2.01
2989 3361 6.428465 TCTGATTTTCGTTGTACTGCCATTAA 59.572 34.615 0.00 0.00 0.00 1.40
2990 3362 5.935206 TCTGATTTTCGTTGTACTGCCATTA 59.065 36.000 0.00 0.00 0.00 1.90
2991 3363 4.759693 TCTGATTTTCGTTGTACTGCCATT 59.240 37.500 0.00 0.00 0.00 3.16
2992 3364 4.323417 TCTGATTTTCGTTGTACTGCCAT 58.677 39.130 0.00 0.00 0.00 4.40
2993 3365 3.734463 TCTGATTTTCGTTGTACTGCCA 58.266 40.909 0.00 0.00 0.00 4.92
2994 3366 4.742438 TTCTGATTTTCGTTGTACTGCC 57.258 40.909 0.00 0.00 0.00 4.85
2995 3367 8.895932 ATTATTTCTGATTTTCGTTGTACTGC 57.104 30.769 0.00 0.00 0.00 4.40
3022 3394 9.055248 CGTGTTTGAATCTGATGAAGTAATTTC 57.945 33.333 0.00 0.00 36.29 2.17
3023 3395 8.567948 ACGTGTTTGAATCTGATGAAGTAATTT 58.432 29.630 0.00 0.00 0.00 1.82
3024 3396 8.099364 ACGTGTTTGAATCTGATGAAGTAATT 57.901 30.769 0.00 0.00 0.00 1.40
3025 3397 7.672983 ACGTGTTTGAATCTGATGAAGTAAT 57.327 32.000 0.00 0.00 0.00 1.89
3026 3398 7.490962 AACGTGTTTGAATCTGATGAAGTAA 57.509 32.000 0.00 0.00 0.00 2.24
3027 3399 8.596271 TTAACGTGTTTGAATCTGATGAAGTA 57.404 30.769 0.00 0.00 0.00 2.24
3070 3442 4.669206 TCACTGCACAAATTTGGATTGT 57.331 36.364 21.74 12.00 41.50 2.71
3150 3522 4.293662 TGTGGAACATTATGTAGTGCCA 57.706 40.909 0.00 1.96 45.67 4.92
3303 3822 5.405873 GCTTTTCGTCTAGTTGTAAAGCTCT 59.594 40.000 21.61 0.00 42.36 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.