Multiple sequence alignment - TraesCS2D01G400900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G400900 chr2D 100.000 3272 0 0 1 3272 515629055 515632326 0.000000e+00 6043.0
1 TraesCS2D01G400900 chr2D 87.838 74 8 1 130 202 494729571 494729498 5.820000e-13 86.1
2 TraesCS2D01G400900 chr2A 92.572 2854 134 23 208 3010 659322834 659325660 0.000000e+00 4024.0
3 TraesCS2D01G400900 chr2A 93.050 259 18 0 3014 3272 12709133 12709391 2.380000e-101 379.0
4 TraesCS2D01G400900 chr2A 76.495 485 87 17 1 476 429715387 429714921 4.220000e-59 239.0
5 TraesCS2D01G400900 chr2A 73.641 368 81 12 1 359 566453802 566454162 9.530000e-26 128.0
6 TraesCS2D01G400900 chr2B 96.260 1952 51 11 600 2530 607106156 607108106 0.000000e+00 3181.0
7 TraesCS2D01G400900 chr2B 92.651 381 21 4 2569 2945 607108101 607108478 2.870000e-150 542.0
8 TraesCS2D01G400900 chr2B 85.347 505 60 8 1 497 607074379 607074877 8.100000e-141 510.0
9 TraesCS2D01G400900 chr6A 84.784 1183 158 15 993 2167 470212847 470214015 0.000000e+00 1168.0
10 TraesCS2D01G400900 chr6D 84.622 1177 163 15 997 2167 331255280 331256444 0.000000e+00 1155.0
11 TraesCS2D01G400900 chr6D 92.969 256 18 0 3017 3272 158590948 158590693 1.110000e-99 374.0
12 TraesCS2D01G400900 chr6B 84.367 1177 166 16 997 2167 489715041 489713877 0.000000e+00 1138.0
13 TraesCS2D01G400900 chr7B 94.141 256 15 0 3017 3272 571604077 571603822 1.100000e-104 390.0
14 TraesCS2D01G400900 chr7A 93.750 256 16 0 3017 3272 3393063 3392808 5.120000e-103 385.0
15 TraesCS2D01G400900 chr7A 92.593 54 3 1 132 184 579017979 579018032 3.500000e-10 76.8
16 TraesCS2D01G400900 chr4D 93.359 256 17 0 3017 3272 401792611 401792356 2.380000e-101 379.0
17 TraesCS2D01G400900 chrUn 92.664 259 19 0 3014 3272 421864192 421864450 1.110000e-99 374.0
18 TraesCS2D01G400900 chr5D 92.664 259 19 0 3014 3272 238075790 238076048 1.110000e-99 374.0
19 TraesCS2D01G400900 chr5D 92.969 256 18 0 3017 3272 361416835 361416580 1.110000e-99 374.0
20 TraesCS2D01G400900 chr3D 92.969 256 18 0 3017 3272 59298658 59298403 1.110000e-99 374.0
21 TraesCS2D01G400900 chr3A 75.161 467 83 19 1 458 638082471 638082029 4.310000e-44 189.0
22 TraesCS2D01G400900 chr7D 73.840 474 86 26 1 458 99973372 99972921 1.570000e-33 154.0
23 TraesCS2D01G400900 chr5A 83.929 112 13 4 1 109 657389364 657389473 5.780000e-18 102.0
24 TraesCS2D01G400900 chr1D 72.303 343 89 6 132 472 393398857 393399195 5.780000e-18 102.0
25 TraesCS2D01G400900 chr4A 87.500 56 5 2 112 167 596741387 596741334 2.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G400900 chr2D 515629055 515632326 3271 False 6043.0 6043 100.0000 1 3272 1 chr2D.!!$F1 3271
1 TraesCS2D01G400900 chr2A 659322834 659325660 2826 False 4024.0 4024 92.5720 208 3010 1 chr2A.!!$F3 2802
2 TraesCS2D01G400900 chr2B 607106156 607108478 2322 False 1861.5 3181 94.4555 600 2945 2 chr2B.!!$F2 2345
3 TraesCS2D01G400900 chr6A 470212847 470214015 1168 False 1168.0 1168 84.7840 993 2167 1 chr6A.!!$F1 1174
4 TraesCS2D01G400900 chr6D 331255280 331256444 1164 False 1155.0 1155 84.6220 997 2167 1 chr6D.!!$F1 1170
5 TraesCS2D01G400900 chr6B 489713877 489715041 1164 True 1138.0 1138 84.3670 997 2167 1 chr6B.!!$R1 1170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.031994 AAAGGTGCATTGACAACGCC 59.968 50.0 3.46 2.13 30.49 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2367 1.559219 TGAGCATTCCCGAAGAATCCA 59.441 47.619 0.0 0.0 43.63 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.577389 CCAAAAGATCGAGCCCCTT 57.423 52.632 0.00 0.00 0.00 3.95
19 20 1.098050 CCAAAAGATCGAGCCCCTTG 58.902 55.000 0.00 0.00 0.00 3.61
20 21 1.340017 CCAAAAGATCGAGCCCCTTGA 60.340 52.381 0.00 0.00 0.00 3.02
21 22 2.012673 CAAAAGATCGAGCCCCTTGAG 58.987 52.381 0.00 0.00 0.00 3.02
22 23 1.280457 AAAGATCGAGCCCCTTGAGT 58.720 50.000 0.00 0.00 0.00 3.41
23 24 1.280457 AAGATCGAGCCCCTTGAGTT 58.720 50.000 0.00 0.00 0.00 3.01
24 25 0.827368 AGATCGAGCCCCTTGAGTTC 59.173 55.000 0.00 0.00 0.00 3.01
25 26 0.537188 GATCGAGCCCCTTGAGTTCA 59.463 55.000 0.00 0.00 0.00 3.18
26 27 1.139853 GATCGAGCCCCTTGAGTTCAT 59.860 52.381 0.00 0.00 0.00 2.57
27 28 0.250234 TCGAGCCCCTTGAGTTCATG 59.750 55.000 0.00 0.00 0.00 3.07
28 29 1.372087 CGAGCCCCTTGAGTTCATGC 61.372 60.000 0.00 0.00 0.00 4.06
29 30 1.000396 AGCCCCTTGAGTTCATGCC 60.000 57.895 0.00 0.00 0.00 4.40
30 31 1.000396 GCCCCTTGAGTTCATGCCT 60.000 57.895 0.00 0.00 0.00 4.75
31 32 0.255890 GCCCCTTGAGTTCATGCCTA 59.744 55.000 0.00 0.00 0.00 3.93
32 33 2.019156 GCCCCTTGAGTTCATGCCTAC 61.019 57.143 0.00 0.00 0.00 3.18
33 34 1.281867 CCCCTTGAGTTCATGCCTACA 59.718 52.381 0.00 0.00 0.00 2.74
34 35 2.290896 CCCCTTGAGTTCATGCCTACAA 60.291 50.000 0.00 0.00 0.00 2.41
35 36 3.420893 CCCTTGAGTTCATGCCTACAAA 58.579 45.455 0.00 0.00 0.00 2.83
36 37 3.441572 CCCTTGAGTTCATGCCTACAAAG 59.558 47.826 0.00 0.00 0.00 2.77
37 38 3.119708 CCTTGAGTTCATGCCTACAAAGC 60.120 47.826 0.00 0.00 0.00 3.51
38 39 2.436417 TGAGTTCATGCCTACAAAGCC 58.564 47.619 0.00 0.00 0.00 4.35
39 40 1.745653 GAGTTCATGCCTACAAAGCCC 59.254 52.381 0.00 0.00 0.00 5.19
40 41 1.075374 AGTTCATGCCTACAAAGCCCA 59.925 47.619 0.00 0.00 0.00 5.36
41 42 1.202348 GTTCATGCCTACAAAGCCCAC 59.798 52.381 0.00 0.00 0.00 4.61
42 43 0.403655 TCATGCCTACAAAGCCCACA 59.596 50.000 0.00 0.00 0.00 4.17
43 44 0.813184 CATGCCTACAAAGCCCACAG 59.187 55.000 0.00 0.00 0.00 3.66
44 45 0.698238 ATGCCTACAAAGCCCACAGA 59.302 50.000 0.00 0.00 0.00 3.41
45 46 0.698238 TGCCTACAAAGCCCACAGAT 59.302 50.000 0.00 0.00 0.00 2.90
46 47 1.912731 TGCCTACAAAGCCCACAGATA 59.087 47.619 0.00 0.00 0.00 1.98
47 48 2.289565 GCCTACAAAGCCCACAGATAC 58.710 52.381 0.00 0.00 0.00 2.24
48 49 2.550978 CCTACAAAGCCCACAGATACG 58.449 52.381 0.00 0.00 0.00 3.06
49 50 2.550978 CTACAAAGCCCACAGATACGG 58.449 52.381 0.00 0.00 0.00 4.02
50 51 0.676782 ACAAAGCCCACAGATACGGC 60.677 55.000 0.00 0.00 43.35 5.68
51 52 1.077716 AAAGCCCACAGATACGGCC 60.078 57.895 0.00 0.00 44.13 6.13
52 53 1.847798 AAAGCCCACAGATACGGCCA 61.848 55.000 2.24 0.00 44.13 5.36
53 54 2.513897 GCCCACAGATACGGCCAC 60.514 66.667 2.24 0.00 36.63 5.01
54 55 2.189521 CCCACAGATACGGCCACC 59.810 66.667 2.24 0.00 0.00 4.61
55 56 2.189521 CCACAGATACGGCCACCC 59.810 66.667 2.24 0.00 0.00 4.61
56 57 2.665089 CCACAGATACGGCCACCCA 61.665 63.158 2.24 0.00 0.00 4.51
57 58 1.449601 CACAGATACGGCCACCCAC 60.450 63.158 2.24 0.00 0.00 4.61
58 59 2.202878 CAGATACGGCCACCCACG 60.203 66.667 2.24 0.00 0.00 4.94
59 60 4.157120 AGATACGGCCACCCACGC 62.157 66.667 2.24 0.00 0.00 5.34
60 61 4.460683 GATACGGCCACCCACGCA 62.461 66.667 2.24 0.00 0.00 5.24
61 62 3.750373 GATACGGCCACCCACGCAT 62.750 63.158 2.24 0.00 0.00 4.73
62 63 3.750373 ATACGGCCACCCACGCATC 62.750 63.158 2.24 0.00 0.00 3.91
75 76 3.814268 GCATCGCGCACAACCCAT 61.814 61.111 8.75 0.00 41.79 4.00
76 77 2.404789 CATCGCGCACAACCCATC 59.595 61.111 8.75 0.00 0.00 3.51
77 78 2.824041 ATCGCGCACAACCCATCC 60.824 61.111 8.75 0.00 0.00 3.51
78 79 3.329542 ATCGCGCACAACCCATCCT 62.330 57.895 8.75 0.00 0.00 3.24
79 80 3.499737 CGCGCACAACCCATCCTC 61.500 66.667 8.75 0.00 0.00 3.71
80 81 3.134127 GCGCACAACCCATCCTCC 61.134 66.667 0.30 0.00 0.00 4.30
81 82 2.671070 CGCACAACCCATCCTCCT 59.329 61.111 0.00 0.00 0.00 3.69
82 83 1.002134 CGCACAACCCATCCTCCTT 60.002 57.895 0.00 0.00 0.00 3.36
83 84 1.026718 CGCACAACCCATCCTCCTTC 61.027 60.000 0.00 0.00 0.00 3.46
84 85 0.038166 GCACAACCCATCCTCCTTCA 59.962 55.000 0.00 0.00 0.00 3.02
85 86 1.826385 CACAACCCATCCTCCTTCAC 58.174 55.000 0.00 0.00 0.00 3.18
86 87 1.352352 CACAACCCATCCTCCTTCACT 59.648 52.381 0.00 0.00 0.00 3.41
87 88 1.352352 ACAACCCATCCTCCTTCACTG 59.648 52.381 0.00 0.00 0.00 3.66
88 89 1.630369 CAACCCATCCTCCTTCACTGA 59.370 52.381 0.00 0.00 0.00 3.41
89 90 1.577736 ACCCATCCTCCTTCACTGAG 58.422 55.000 0.00 0.00 0.00 3.35
90 91 1.203364 ACCCATCCTCCTTCACTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
91 92 2.044492 ACCCATCCTCCTTCACTGAGTA 59.956 50.000 0.00 0.00 0.00 2.59
92 93 2.432510 CCCATCCTCCTTCACTGAGTAC 59.567 54.545 0.00 0.00 0.00 2.73
93 94 3.370104 CCATCCTCCTTCACTGAGTACT 58.630 50.000 0.00 0.00 0.00 2.73
94 95 3.383185 CCATCCTCCTTCACTGAGTACTC 59.617 52.174 16.32 16.32 0.00 2.59
95 96 3.808834 TCCTCCTTCACTGAGTACTCA 57.191 47.619 23.80 23.80 38.06 3.41
96 97 4.323569 TCCTCCTTCACTGAGTACTCAT 57.676 45.455 25.35 13.03 39.13 2.90
97 98 4.274147 TCCTCCTTCACTGAGTACTCATC 58.726 47.826 25.35 0.00 39.13 2.92
98 99 3.383185 CCTCCTTCACTGAGTACTCATCC 59.617 52.174 25.35 0.00 39.13 3.51
99 100 4.019858 CTCCTTCACTGAGTACTCATCCA 58.980 47.826 25.35 9.55 39.13 3.41
100 101 4.614475 TCCTTCACTGAGTACTCATCCAT 58.386 43.478 25.35 9.32 39.13 3.41
101 102 4.646945 TCCTTCACTGAGTACTCATCCATC 59.353 45.833 25.35 0.00 39.13 3.51
102 103 4.498850 CCTTCACTGAGTACTCATCCATCG 60.499 50.000 25.35 14.92 39.13 3.84
103 104 3.621558 TCACTGAGTACTCATCCATCGT 58.378 45.455 25.35 15.55 39.13 3.73
104 105 3.378427 TCACTGAGTACTCATCCATCGTG 59.622 47.826 25.35 24.71 39.13 4.35
105 106 2.099921 ACTGAGTACTCATCCATCGTGC 59.900 50.000 25.35 0.00 39.13 5.34
106 107 2.360483 CTGAGTACTCATCCATCGTGCT 59.640 50.000 25.35 0.00 39.13 4.40
107 108 2.760650 TGAGTACTCATCCATCGTGCTT 59.239 45.455 21.74 0.00 34.14 3.91
108 109 3.119291 GAGTACTCATCCATCGTGCTTG 58.881 50.000 18.20 0.00 0.00 4.01
109 110 2.760650 AGTACTCATCCATCGTGCTTGA 59.239 45.455 0.00 0.00 0.00 3.02
110 111 2.306341 ACTCATCCATCGTGCTTGAG 57.694 50.000 0.00 0.00 39.70 3.02
111 112 1.827344 ACTCATCCATCGTGCTTGAGA 59.173 47.619 15.39 0.00 37.75 3.27
112 113 2.234661 ACTCATCCATCGTGCTTGAGAA 59.765 45.455 15.39 0.00 37.75 2.87
113 114 2.606725 CTCATCCATCGTGCTTGAGAAC 59.393 50.000 0.00 0.00 36.72 3.01
114 115 2.028203 TCATCCATCGTGCTTGAGAACA 60.028 45.455 0.00 0.00 0.00 3.18
115 116 2.542020 TCCATCGTGCTTGAGAACAA 57.458 45.000 0.00 0.00 34.65 2.83
116 117 2.143122 TCCATCGTGCTTGAGAACAAC 58.857 47.619 0.00 0.00 32.27 3.32
117 118 1.136252 CCATCGTGCTTGAGAACAACG 60.136 52.381 0.00 0.00 32.27 4.10
118 119 1.792367 CATCGTGCTTGAGAACAACGA 59.208 47.619 0.00 0.00 36.81 3.85
119 120 1.487482 TCGTGCTTGAGAACAACGAG 58.513 50.000 0.00 0.00 31.76 4.18
120 121 1.066454 TCGTGCTTGAGAACAACGAGA 59.934 47.619 0.00 0.00 31.76 4.04
121 122 1.858458 CGTGCTTGAGAACAACGAGAA 59.142 47.619 0.00 0.00 32.27 2.87
122 123 2.097202 CGTGCTTGAGAACAACGAGAAG 60.097 50.000 0.00 0.00 32.27 2.85
123 124 2.866762 GTGCTTGAGAACAACGAGAAGT 59.133 45.455 0.00 0.00 32.27 3.01
124 125 3.060205 GTGCTTGAGAACAACGAGAAGTC 60.060 47.826 0.00 0.00 32.27 3.01
125 126 2.476997 GCTTGAGAACAACGAGAAGTCC 59.523 50.000 0.00 0.00 32.27 3.85
126 127 3.717707 CTTGAGAACAACGAGAAGTCCA 58.282 45.455 0.00 0.00 32.27 4.02
127 128 3.812156 TGAGAACAACGAGAAGTCCAA 57.188 42.857 0.00 0.00 0.00 3.53
128 129 4.131649 TGAGAACAACGAGAAGTCCAAA 57.868 40.909 0.00 0.00 0.00 3.28
129 130 4.509616 TGAGAACAACGAGAAGTCCAAAA 58.490 39.130 0.00 0.00 0.00 2.44
130 131 4.570772 TGAGAACAACGAGAAGTCCAAAAG 59.429 41.667 0.00 0.00 0.00 2.27
131 132 4.766375 AGAACAACGAGAAGTCCAAAAGA 58.234 39.130 0.00 0.00 0.00 2.52
132 133 5.183228 AGAACAACGAGAAGTCCAAAAGAA 58.817 37.500 0.00 0.00 0.00 2.52
133 134 5.646360 AGAACAACGAGAAGTCCAAAAGAAA 59.354 36.000 0.00 0.00 0.00 2.52
134 135 5.890424 ACAACGAGAAGTCCAAAAGAAAA 57.110 34.783 0.00 0.00 0.00 2.29
135 136 6.262193 ACAACGAGAAGTCCAAAAGAAAAA 57.738 33.333 0.00 0.00 0.00 1.94
136 137 6.322491 ACAACGAGAAGTCCAAAAGAAAAAG 58.678 36.000 0.00 0.00 0.00 2.27
137 138 4.921547 ACGAGAAGTCCAAAAGAAAAAGC 58.078 39.130 0.00 0.00 0.00 3.51
138 139 4.640647 ACGAGAAGTCCAAAAGAAAAAGCT 59.359 37.500 0.00 0.00 0.00 3.74
139 140 5.208503 CGAGAAGTCCAAAAGAAAAAGCTC 58.791 41.667 0.00 0.00 0.00 4.09
140 141 5.220854 CGAGAAGTCCAAAAGAAAAAGCTCA 60.221 40.000 0.00 0.00 0.00 4.26
141 142 6.530019 AGAAGTCCAAAAGAAAAAGCTCAA 57.470 33.333 0.00 0.00 0.00 3.02
142 143 7.117285 AGAAGTCCAAAAGAAAAAGCTCAAT 57.883 32.000 0.00 0.00 0.00 2.57
143 144 6.982724 AGAAGTCCAAAAGAAAAAGCTCAATG 59.017 34.615 0.00 0.00 0.00 2.82
144 145 5.604565 AGTCCAAAAGAAAAAGCTCAATGG 58.395 37.500 0.00 0.00 0.00 3.16
145 146 4.212004 GTCCAAAAGAAAAAGCTCAATGGC 59.788 41.667 0.00 0.00 0.00 4.40
146 147 4.128643 CCAAAAGAAAAAGCTCAATGGCA 58.871 39.130 0.00 0.00 34.17 4.92
147 148 4.758165 CCAAAAGAAAAAGCTCAATGGCAT 59.242 37.500 0.00 0.00 34.17 4.40
148 149 5.239963 CCAAAAGAAAAAGCTCAATGGCATT 59.760 36.000 6.96 6.96 34.17 3.56
149 150 6.238814 CCAAAAGAAAAAGCTCAATGGCATTT 60.239 34.615 10.65 0.00 35.15 2.32
150 151 5.934935 AAGAAAAAGCTCAATGGCATTTG 57.065 34.783 10.65 7.75 34.17 2.32
151 152 5.217978 AGAAAAAGCTCAATGGCATTTGA 57.782 34.783 10.65 10.55 34.17 2.69
152 153 4.992951 AGAAAAAGCTCAATGGCATTTGAC 59.007 37.500 10.65 2.50 34.17 3.18
153 154 4.339872 AAAAGCTCAATGGCATTTGACA 57.660 36.364 10.65 0.00 37.54 3.58
154 155 3.587797 AAGCTCAATGGCATTTGACAG 57.412 42.857 10.65 5.53 35.91 3.51
155 156 2.799017 AGCTCAATGGCATTTGACAGA 58.201 42.857 10.65 3.51 35.91 3.41
156 157 3.159472 AGCTCAATGGCATTTGACAGAA 58.841 40.909 10.65 0.00 35.91 3.02
157 158 3.057033 AGCTCAATGGCATTTGACAGAAC 60.057 43.478 10.65 0.00 35.91 3.01
158 159 3.305539 GCTCAATGGCATTTGACAGAACA 60.306 43.478 10.65 0.00 35.91 3.18
159 160 4.232221 CTCAATGGCATTTGACAGAACAC 58.768 43.478 10.65 0.00 35.91 3.32
160 161 3.005684 TCAATGGCATTTGACAGAACACC 59.994 43.478 10.65 0.00 35.91 4.16
161 162 2.363306 TGGCATTTGACAGAACACCT 57.637 45.000 0.00 0.00 0.00 4.00
163 164 1.336240 GGCATTTGACAGAACACCTGC 60.336 52.381 0.00 0.00 46.81 4.85
164 165 1.336240 GCATTTGACAGAACACCTGCC 60.336 52.381 0.00 0.00 46.81 4.85
165 166 1.069022 CATTTGACAGAACACCTGCCG 60.069 52.381 0.00 0.00 46.81 5.69
166 167 0.817634 TTTGACAGAACACCTGCCGG 60.818 55.000 0.00 0.00 46.81 6.13
167 168 2.358737 GACAGAACACCTGCCGGG 60.359 66.667 2.18 0.00 46.81 5.73
168 169 4.643387 ACAGAACACCTGCCGGGC 62.643 66.667 13.32 13.32 46.81 6.13
169 170 4.641645 CAGAACACCTGCCGGGCA 62.642 66.667 22.39 22.39 39.10 5.36
170 171 3.650950 AGAACACCTGCCGGGCAT 61.651 61.111 24.10 7.03 38.13 4.40
171 172 3.443045 GAACACCTGCCGGGCATG 61.443 66.667 24.10 22.26 38.13 4.06
182 183 2.272146 GGGCATGGTGTCCGTCAT 59.728 61.111 0.00 0.00 29.54 3.06
183 184 2.114670 GGGCATGGTGTCCGTCATG 61.115 63.158 0.00 0.00 42.47 3.07
184 185 1.078497 GGCATGGTGTCCGTCATGA 60.078 57.895 7.40 0.00 42.25 3.07
185 186 0.676466 GGCATGGTGTCCGTCATGAA 60.676 55.000 0.00 0.00 42.25 2.57
186 187 0.447801 GCATGGTGTCCGTCATGAAC 59.552 55.000 0.00 0.00 42.25 3.18
194 195 2.474266 CGTCATGAACGTTGCCGG 59.526 61.111 5.00 0.00 46.42 6.13
195 196 2.175811 GTCATGAACGTTGCCGGC 59.824 61.111 22.73 22.73 38.78 6.13
196 197 2.281139 TCATGAACGTTGCCGGCA 60.281 55.556 29.03 29.03 38.78 5.69
197 198 1.894282 TCATGAACGTTGCCGGCAA 60.894 52.632 37.30 37.30 38.78 4.52
198 199 1.442520 CATGAACGTTGCCGGCAAG 60.443 57.895 40.97 32.54 38.78 4.01
199 200 2.625823 ATGAACGTTGCCGGCAAGG 61.626 57.895 44.05 44.05 44.43 3.61
200 201 4.038080 GAACGTTGCCGGCAAGGG 62.038 66.667 45.98 37.89 43.54 3.95
219 220 1.119574 GGGCGAAGGGTATCTGGCTA 61.120 60.000 0.00 0.00 0.00 3.93
222 223 1.402984 GCGAAGGGTATCTGGCTATCG 60.403 57.143 0.00 0.00 0.00 2.92
286 287 1.976474 ATTGGTGGCGGTTGCGAAT 60.976 52.632 0.00 0.00 44.10 3.34
293 294 0.814010 GGCGGTTGCGAATGTCCTAT 60.814 55.000 0.00 0.00 44.10 2.57
304 305 3.364664 CGAATGTCCTATGATGCATGTGC 60.365 47.826 2.46 0.00 42.50 4.57
310 311 1.446516 TATGATGCATGTGCGGTGGC 61.447 55.000 2.46 0.00 45.83 5.01
328 329 0.961019 GCTGGAAAGGTGCATTGACA 59.039 50.000 0.00 0.00 0.00 3.58
333 334 0.031994 AAAGGTGCATTGACAACGCC 59.968 50.000 3.46 2.13 30.49 5.68
335 336 2.126888 GTGCATTGACAACGCCGG 60.127 61.111 3.46 0.00 0.00 6.13
372 373 5.063880 GGATGCAAAGTAACAGGGGTATAG 58.936 45.833 0.00 0.00 0.00 1.31
378 379 4.472690 AGTAACAGGGGTATAGAGGAGG 57.527 50.000 0.00 0.00 0.00 4.30
396 397 3.403968 GAGGAGTGGAAGAAAAGTGGAC 58.596 50.000 0.00 0.00 0.00 4.02
397 398 2.106684 AGGAGTGGAAGAAAAGTGGACC 59.893 50.000 0.00 0.00 0.00 4.46
411 412 3.845860 AGTGGACCAGAAGTGAGACTTA 58.154 45.455 0.00 0.00 38.80 2.24
420 421 3.256136 AGAAGTGAGACTTAAGTGGGTCG 59.744 47.826 14.14 0.00 38.80 4.79
421 422 2.872732 AGTGAGACTTAAGTGGGTCGA 58.127 47.619 14.14 0.00 37.52 4.20
434 435 1.377725 GGTCGAGGGTGTCCGAGTA 60.378 63.158 0.00 0.00 38.33 2.59
442 443 1.407979 GGGTGTCCGAGTACTATGTGG 59.592 57.143 0.00 0.00 0.00 4.17
517 539 3.067180 GTCCGGACCGAGTATCATTGTTA 59.933 47.826 24.75 0.00 33.17 2.41
524 546 8.060090 CGGACCGAGTATCATTGTTATTAAAAC 58.940 37.037 8.64 0.00 33.17 2.43
525 547 8.060090 GGACCGAGTATCATTGTTATTAAAACG 58.940 37.037 0.00 0.00 33.17 3.60
534 556 8.259049 TCATTGTTATTAAAACGAGTTCGGAT 57.741 30.769 6.48 0.00 44.95 4.18
538 560 7.962917 TGTTATTAAAACGAGTTCGGATAACC 58.037 34.615 6.48 0.00 44.95 2.85
539 561 7.818930 TGTTATTAAAACGAGTTCGGATAACCT 59.181 33.333 6.48 0.00 44.95 3.50
546 568 1.831736 AGTTCGGATAACCTGGTCTGG 59.168 52.381 0.00 0.00 0.00 3.86
558 580 2.746375 GGTCTGGATGGATGCGGGT 61.746 63.158 0.00 0.00 0.00 5.28
567 589 0.617935 TGGATGCGGGTGATTTGAGA 59.382 50.000 0.00 0.00 0.00 3.27
568 590 1.303309 GGATGCGGGTGATTTGAGAG 58.697 55.000 0.00 0.00 0.00 3.20
570 592 2.208431 GATGCGGGTGATTTGAGAGAG 58.792 52.381 0.00 0.00 0.00 3.20
580 602 3.387374 TGATTTGAGAGAGAGGAGATGCC 59.613 47.826 0.00 0.00 0.00 4.40
595 617 4.501071 GAGATGCCTTAACGAACCTACAA 58.499 43.478 0.00 0.00 0.00 2.41
614 636 9.396022 ACCTACAATTTGGTCATAACTCATAAG 57.604 33.333 0.78 0.00 29.18 1.73
636 679 1.374758 CGAGCACTGAACCAGTCCC 60.375 63.158 0.00 0.00 43.43 4.46
638 681 3.050275 GCACTGAACCAGTCCCGC 61.050 66.667 0.00 0.00 43.43 6.13
639 682 2.358737 CACTGAACCAGTCCCGCC 60.359 66.667 0.00 0.00 43.43 6.13
640 683 4.003788 ACTGAACCAGTCCCGCCG 62.004 66.667 0.00 0.00 41.21 6.46
641 684 3.691342 CTGAACCAGTCCCGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
642 685 3.934391 CTGAACCAGTCCCGCCGAC 62.934 68.421 0.00 0.00 42.32 4.79
643 686 4.754667 GAACCAGTCCCGCCGACC 62.755 72.222 0.00 0.00 43.08 4.79
647 690 4.742201 CAGTCCCGCCGACCAGTG 62.742 72.222 0.00 0.00 43.08 3.66
654 697 4.664677 GCCGACCAGTGTGCTCGT 62.665 66.667 0.00 0.00 0.00 4.18
655 698 2.430921 CCGACCAGTGTGCTCGTC 60.431 66.667 0.00 0.00 30.91 4.20
656 699 2.430921 CGACCAGTGTGCTCGTCC 60.431 66.667 0.00 0.00 30.53 4.79
657 700 2.430921 GACCAGTGTGCTCGTCCG 60.431 66.667 0.00 0.00 28.42 4.79
658 701 2.910479 ACCAGTGTGCTCGTCCGA 60.910 61.111 0.00 0.00 0.00 4.55
730 776 1.315690 CCGGCGGTCTACATAGAGAA 58.684 55.000 19.97 0.00 32.01 2.87
743 789 0.892358 TAGAGAACTCACGCACCGGT 60.892 55.000 0.00 0.00 0.00 5.28
778 846 5.470777 AGACGTATAGAACTAGAGCACCATC 59.529 44.000 0.00 0.00 0.00 3.51
781 849 5.407691 CGTATAGAACTAGAGCACCATCGTA 59.592 44.000 0.00 0.00 0.00 3.43
782 850 5.950758 ATAGAACTAGAGCACCATCGTAG 57.049 43.478 0.00 0.00 0.00 3.51
840 909 2.710724 GAAAGTCCACGGCACCTCGT 62.711 60.000 0.00 0.00 44.91 4.18
841 910 2.319890 AAAGTCCACGGCACCTCGTT 62.320 55.000 0.00 0.00 41.86 3.85
862 931 1.302033 CCTTCACAGAACGGCAGCT 60.302 57.895 0.00 0.00 0.00 4.24
863 932 0.886490 CCTTCACAGAACGGCAGCTT 60.886 55.000 0.00 0.00 0.00 3.74
944 1013 4.009539 CTCAATCGCCTCGAGCAG 57.990 61.111 6.99 2.72 44.04 4.24
962 1031 0.540923 AGCAAGAGATCTCACCAGCC 59.459 55.000 24.39 6.61 0.00 4.85
1143 1212 3.350909 CTTCATCGCGGTGGTCGGA 62.351 63.158 21.08 0.00 39.69 4.55
1256 1325 2.879070 GCATGATGCTGCTCGTCGG 61.879 63.158 10.72 0.00 40.96 4.79
1296 1365 2.268920 GAGCACCCCAAGATCGCA 59.731 61.111 0.00 0.00 0.00 5.10
1362 1434 3.445687 ACCGTCGACGCCATGCTA 61.446 61.111 31.73 0.00 38.18 3.49
1656 1728 4.675029 CCCGTGTTCGCCTTCGGT 62.675 66.667 0.00 0.00 41.17 4.69
2022 2094 2.763710 TGGCTGCGCTGGATCCTA 60.764 61.111 14.23 0.00 0.00 2.94
2238 2310 2.283316 TCCGGGACATGGACGTCA 60.283 61.111 18.91 3.91 37.66 4.35
2295 2367 3.144657 TCACTGCATCAACAAGGACAT 57.855 42.857 0.00 0.00 0.00 3.06
2305 2377 4.002982 TCAACAAGGACATGGATTCTTCG 58.997 43.478 0.00 0.00 0.00 3.79
2316 2389 2.643551 GGATTCTTCGGGAATGCTCAA 58.356 47.619 13.10 0.00 45.39 3.02
2317 2390 2.615912 GGATTCTTCGGGAATGCTCAAG 59.384 50.000 13.10 0.00 45.39 3.02
2318 2391 2.859165 TTCTTCGGGAATGCTCAAGT 57.141 45.000 0.00 0.00 0.00 3.16
2319 2392 2.099141 TCTTCGGGAATGCTCAAGTG 57.901 50.000 0.00 0.00 0.00 3.16
2320 2393 1.347707 TCTTCGGGAATGCTCAAGTGT 59.652 47.619 0.00 0.00 0.00 3.55
2322 2395 2.380084 TCGGGAATGCTCAAGTGTAC 57.620 50.000 0.00 0.00 0.00 2.90
2323 2396 1.621317 TCGGGAATGCTCAAGTGTACA 59.379 47.619 0.00 0.00 0.00 2.90
2324 2397 1.732259 CGGGAATGCTCAAGTGTACAC 59.268 52.381 18.56 18.56 0.00 2.90
2368 2442 0.321919 TCCAGTTCAGCTGCCATGTC 60.322 55.000 9.47 0.00 43.71 3.06
2452 2526 1.300931 CTCATGGTATCCCACGGCG 60.301 63.158 4.80 4.80 45.65 6.46
2466 2545 3.191669 CCACGGCGAAATCTGTATTGTA 58.808 45.455 16.62 0.00 0.00 2.41
2467 2546 3.619483 CCACGGCGAAATCTGTATTGTAA 59.381 43.478 16.62 0.00 0.00 2.41
2468 2547 4.272504 CCACGGCGAAATCTGTATTGTAAT 59.727 41.667 16.62 0.00 0.00 1.89
2476 2555 8.436200 GCGAAATCTGTATTGTAATAGATGTCC 58.564 37.037 0.00 0.00 32.64 4.02
2508 2589 0.655733 GACCACAACGAACCTGTGTG 59.344 55.000 0.00 0.00 42.18 3.82
2567 2648 9.810545 TGTTCTTTTTGTCTAAAATTGTTAGGG 57.189 29.630 0.00 0.00 35.82 3.53
2792 2874 3.548014 CGATCAGTTTTTGCTTGAACGGT 60.548 43.478 0.00 0.00 0.00 4.83
2832 2915 4.202161 TGTCCTCTGTTCAAGTTCTCTGTC 60.202 45.833 0.00 0.00 0.00 3.51
2888 2974 3.491792 CCAAAGAGCAAAACCGGCTAAAA 60.492 43.478 0.00 0.00 42.78 1.52
2991 3081 7.568349 ACAAAGAGTACATATGTGGTCATCAT 58.432 34.615 18.81 0.00 35.70 2.45
3006 3096 8.729756 TGTGGTCATCATAAGAAACAAACATAG 58.270 33.333 0.00 0.00 0.00 2.23
3019 3109 9.736023 AGAAACAAACATAGATGTCTTGTTTTC 57.264 29.630 26.92 22.62 46.51 2.29
3020 3110 8.871686 AAACAAACATAGATGTCTTGTTTTCC 57.128 30.769 24.20 0.00 45.71 3.13
3021 3111 7.823745 ACAAACATAGATGTCTTGTTTTCCT 57.176 32.000 14.72 0.00 40.56 3.36
3022 3112 8.237811 ACAAACATAGATGTCTTGTTTTCCTT 57.762 30.769 14.72 4.53 40.56 3.36
3023 3113 8.352942 ACAAACATAGATGTCTTGTTTTCCTTC 58.647 33.333 14.72 0.00 40.56 3.46
3024 3114 8.571336 CAAACATAGATGTCTTGTTTTCCTTCT 58.429 33.333 14.72 0.00 40.56 2.85
3025 3115 8.697507 AACATAGATGTCTTGTTTTCCTTCTT 57.302 30.769 0.00 0.00 40.80 2.52
3026 3116 8.329203 ACATAGATGTCTTGTTTTCCTTCTTC 57.671 34.615 0.00 0.00 35.87 2.87
3027 3117 7.391833 ACATAGATGTCTTGTTTTCCTTCTTCC 59.608 37.037 0.00 0.00 35.87 3.46
3028 3118 5.694995 AGATGTCTTGTTTTCCTTCTTCCA 58.305 37.500 0.00 0.00 0.00 3.53
3029 3119 5.767168 AGATGTCTTGTTTTCCTTCTTCCAG 59.233 40.000 0.00 0.00 0.00 3.86
3030 3120 4.855340 TGTCTTGTTTTCCTTCTTCCAGT 58.145 39.130 0.00 0.00 0.00 4.00
3031 3121 5.261216 TGTCTTGTTTTCCTTCTTCCAGTT 58.739 37.500 0.00 0.00 0.00 3.16
3032 3122 5.125417 TGTCTTGTTTTCCTTCTTCCAGTTG 59.875 40.000 0.00 0.00 0.00 3.16
3033 3123 4.097892 TCTTGTTTTCCTTCTTCCAGTTGC 59.902 41.667 0.00 0.00 0.00 4.17
3034 3124 2.693074 TGTTTTCCTTCTTCCAGTTGCC 59.307 45.455 0.00 0.00 0.00 4.52
3035 3125 1.604604 TTTCCTTCTTCCAGTTGCCG 58.395 50.000 0.00 0.00 0.00 5.69
3036 3126 0.762418 TTCCTTCTTCCAGTTGCCGA 59.238 50.000 0.00 0.00 0.00 5.54
3037 3127 0.762418 TCCTTCTTCCAGTTGCCGAA 59.238 50.000 0.00 0.00 0.00 4.30
3038 3128 1.142060 TCCTTCTTCCAGTTGCCGAAA 59.858 47.619 0.00 0.00 0.00 3.46
3039 3129 1.537202 CCTTCTTCCAGTTGCCGAAAG 59.463 52.381 0.00 0.00 0.00 2.62
3057 3147 5.877031 CGAAAGGAGTTCTACGTAGATTGA 58.123 41.667 25.17 8.72 33.70 2.57
3058 3148 6.320171 CGAAAGGAGTTCTACGTAGATTGAA 58.680 40.000 25.17 8.34 33.70 2.69
3059 3149 6.973474 CGAAAGGAGTTCTACGTAGATTGAAT 59.027 38.462 25.17 10.61 33.70 2.57
3060 3150 7.488471 CGAAAGGAGTTCTACGTAGATTGAATT 59.512 37.037 25.17 15.57 33.70 2.17
3061 3151 9.798994 GAAAGGAGTTCTACGTAGATTGAATTA 57.201 33.333 25.17 6.46 33.03 1.40
3084 3174 8.776376 TTATTTCCAATCAAGATTCTTTTGGC 57.224 30.769 18.94 0.00 37.37 4.52
3085 3175 5.804944 TTCCAATCAAGATTCTTTTGGCA 57.195 34.783 18.94 10.19 37.37 4.92
3086 3176 5.804944 TCCAATCAAGATTCTTTTGGCAA 57.195 34.783 18.94 0.00 37.37 4.52
3087 3177 5.786311 TCCAATCAAGATTCTTTTGGCAAG 58.214 37.500 18.94 0.00 37.37 4.01
3088 3178 5.539574 TCCAATCAAGATTCTTTTGGCAAGA 59.460 36.000 18.94 0.00 37.37 3.02
3089 3179 6.041865 TCCAATCAAGATTCTTTTGGCAAGAA 59.958 34.615 18.94 4.22 40.17 2.52
3090 3180 6.707161 CCAATCAAGATTCTTTTGGCAAGAAA 59.293 34.615 14.10 0.31 39.43 2.52
3091 3181 7.227116 CCAATCAAGATTCTTTTGGCAAGAAAA 59.773 33.333 14.10 0.00 39.43 2.29
3092 3182 8.780249 CAATCAAGATTCTTTTGGCAAGAAAAT 58.220 29.630 5.77 0.00 39.43 1.82
3094 3184 9.649167 ATCAAGATTCTTTTGGCAAGAAAATAG 57.351 29.630 5.77 0.00 39.43 1.73
3095 3185 7.599998 TCAAGATTCTTTTGGCAAGAAAATAGC 59.400 33.333 5.77 0.00 39.43 2.97
3096 3186 6.095377 AGATTCTTTTGGCAAGAAAATAGCG 58.905 36.000 5.77 0.00 39.43 4.26
3097 3187 5.446143 TTCTTTTGGCAAGAAAATAGCGA 57.554 34.783 0.00 0.00 33.72 4.93
3098 3188 5.046910 TCTTTTGGCAAGAAAATAGCGAG 57.953 39.130 0.00 0.00 0.00 5.03
3099 3189 4.759693 TCTTTTGGCAAGAAAATAGCGAGA 59.240 37.500 0.00 0.00 0.00 4.04
3100 3190 4.685169 TTTGGCAAGAAAATAGCGAGAG 57.315 40.909 0.00 0.00 0.00 3.20
3101 3191 3.610040 TGGCAAGAAAATAGCGAGAGA 57.390 42.857 0.00 0.00 0.00 3.10
3102 3192 3.937814 TGGCAAGAAAATAGCGAGAGAA 58.062 40.909 0.00 0.00 0.00 2.87
3103 3193 4.323417 TGGCAAGAAAATAGCGAGAGAAA 58.677 39.130 0.00 0.00 0.00 2.52
3104 3194 4.393062 TGGCAAGAAAATAGCGAGAGAAAG 59.607 41.667 0.00 0.00 0.00 2.62
3105 3195 4.631813 GGCAAGAAAATAGCGAGAGAAAGA 59.368 41.667 0.00 0.00 0.00 2.52
3106 3196 5.122396 GGCAAGAAAATAGCGAGAGAAAGAA 59.878 40.000 0.00 0.00 0.00 2.52
3107 3197 6.348540 GGCAAGAAAATAGCGAGAGAAAGAAA 60.349 38.462 0.00 0.00 0.00 2.52
3108 3198 7.247019 GCAAGAAAATAGCGAGAGAAAGAAAT 58.753 34.615 0.00 0.00 0.00 2.17
3109 3199 8.391106 GCAAGAAAATAGCGAGAGAAAGAAATA 58.609 33.333 0.00 0.00 0.00 1.40
3112 3202 8.973378 AGAAAATAGCGAGAGAAAGAAATATCG 58.027 33.333 0.00 0.00 0.00 2.92
3113 3203 8.873215 AAAATAGCGAGAGAAAGAAATATCGA 57.127 30.769 0.00 0.00 32.13 3.59
3114 3204 7.861176 AATAGCGAGAGAAAGAAATATCGAC 57.139 36.000 0.00 0.00 32.13 4.20
3115 3205 5.508200 AGCGAGAGAAAGAAATATCGACT 57.492 39.130 0.00 0.00 32.13 4.18
3116 3206 6.621316 AGCGAGAGAAAGAAATATCGACTA 57.379 37.500 0.00 0.00 32.13 2.59
3117 3207 6.664515 AGCGAGAGAAAGAAATATCGACTAG 58.335 40.000 0.00 0.00 32.13 2.57
3118 3208 5.341196 GCGAGAGAAAGAAATATCGACTAGC 59.659 44.000 0.00 0.00 32.13 3.42
3119 3209 6.664515 CGAGAGAAAGAAATATCGACTAGCT 58.335 40.000 0.00 0.00 32.13 3.32
3120 3210 7.571613 GCGAGAGAAAGAAATATCGACTAGCTA 60.572 40.741 0.00 0.00 32.13 3.32
3121 3211 8.283992 CGAGAGAAAGAAATATCGACTAGCTAA 58.716 37.037 0.00 0.00 32.13 3.09
3122 3212 9.953697 GAGAGAAAGAAATATCGACTAGCTAAA 57.046 33.333 0.00 0.00 0.00 1.85
3125 3215 9.482627 AGAAAGAAATATCGACTAGCTAAATGG 57.517 33.333 0.00 0.00 0.00 3.16
3126 3216 9.477484 GAAAGAAATATCGACTAGCTAAATGGA 57.523 33.333 0.00 0.00 0.00 3.41
3127 3217 9.482627 AAAGAAATATCGACTAGCTAAATGGAG 57.517 33.333 0.00 0.00 0.00 3.86
3128 3218 8.184304 AGAAATATCGACTAGCTAAATGGAGT 57.816 34.615 0.00 0.00 0.00 3.85
3129 3219 8.085296 AGAAATATCGACTAGCTAAATGGAGTG 58.915 37.037 0.00 0.00 0.00 3.51
3130 3220 6.902771 ATATCGACTAGCTAAATGGAGTGT 57.097 37.500 0.00 0.00 0.00 3.55
3131 3221 4.371855 TCGACTAGCTAAATGGAGTGTG 57.628 45.455 0.00 0.00 0.00 3.82
3132 3222 3.130516 TCGACTAGCTAAATGGAGTGTGG 59.869 47.826 0.00 0.00 0.00 4.17
3133 3223 3.119101 CGACTAGCTAAATGGAGTGTGGT 60.119 47.826 0.00 0.00 0.00 4.16
3134 3224 4.620803 CGACTAGCTAAATGGAGTGTGGTT 60.621 45.833 0.00 0.00 0.00 3.67
3135 3225 5.242795 ACTAGCTAAATGGAGTGTGGTTT 57.757 39.130 0.00 0.00 0.00 3.27
3136 3226 5.003804 ACTAGCTAAATGGAGTGTGGTTTG 58.996 41.667 0.00 0.00 0.00 2.93
3137 3227 2.558359 AGCTAAATGGAGTGTGGTTTGC 59.442 45.455 0.00 0.00 0.00 3.68
3138 3228 2.352715 GCTAAATGGAGTGTGGTTTGCC 60.353 50.000 0.00 0.00 0.00 4.52
3139 3229 0.673437 AAATGGAGTGTGGTTTGCCG 59.327 50.000 0.00 0.00 37.67 5.69
3140 3230 0.467290 AATGGAGTGTGGTTTGCCGT 60.467 50.000 0.00 0.00 37.67 5.68
3141 3231 0.889186 ATGGAGTGTGGTTTGCCGTC 60.889 55.000 0.00 0.00 37.67 4.79
3142 3232 2.258726 GGAGTGTGGTTTGCCGTCC 61.259 63.158 0.00 0.00 37.67 4.79
3143 3233 2.203294 AGTGTGGTTTGCCGTCCC 60.203 61.111 0.00 0.00 37.67 4.46
3144 3234 2.517402 GTGTGGTTTGCCGTCCCA 60.517 61.111 0.00 0.00 37.67 4.37
3145 3235 2.122167 GTGTGGTTTGCCGTCCCAA 61.122 57.895 0.00 0.00 37.67 4.12
3146 3236 1.379977 TGTGGTTTGCCGTCCCAAA 60.380 52.632 0.00 0.00 37.67 3.28
3150 3240 3.527641 TTTGCCGTCCCAAACACC 58.472 55.556 0.00 0.00 30.28 4.16
3151 3241 1.379977 TTTGCCGTCCCAAACACCA 60.380 52.632 0.00 0.00 30.28 4.17
3152 3242 0.970937 TTTGCCGTCCCAAACACCAA 60.971 50.000 0.00 0.00 30.28 3.67
3153 3243 1.388065 TTGCCGTCCCAAACACCAAG 61.388 55.000 0.00 0.00 0.00 3.61
3154 3244 2.561037 GCCGTCCCAAACACCAAGG 61.561 63.158 0.00 0.00 0.00 3.61
3155 3245 2.561037 CCGTCCCAAACACCAAGGC 61.561 63.158 0.00 0.00 0.00 4.35
3156 3246 2.903547 CGTCCCAAACACCAAGGCG 61.904 63.158 0.00 0.00 0.00 5.52
3157 3247 2.203422 TCCCAAACACCAAGGCGG 60.203 61.111 0.00 0.00 42.50 6.13
3158 3248 3.302344 CCCAAACACCAAGGCGGG 61.302 66.667 0.00 0.00 40.22 6.13
3159 3249 2.520741 CCAAACACCAAGGCGGGT 60.521 61.111 0.00 0.00 43.56 5.28
3160 3250 2.131067 CCAAACACCAAGGCGGGTT 61.131 57.895 0.86 0.00 39.79 4.11
3161 3251 1.067250 CAAACACCAAGGCGGGTTG 59.933 57.895 0.86 1.28 39.79 3.77
3162 3252 1.076632 AAACACCAAGGCGGGTTGA 60.077 52.632 0.86 0.00 39.79 3.18
3163 3253 1.106944 AAACACCAAGGCGGGTTGAG 61.107 55.000 0.86 0.00 39.79 3.02
3164 3254 3.365265 CACCAAGGCGGGTTGAGC 61.365 66.667 0.86 0.00 39.79 4.26
3165 3255 3.884774 ACCAAGGCGGGTTGAGCA 61.885 61.111 0.00 0.00 38.19 4.26
3166 3256 2.361610 CCAAGGCGGGTTGAGCAT 60.362 61.111 0.00 0.00 36.08 3.79
3167 3257 1.978617 CCAAGGCGGGTTGAGCATT 60.979 57.895 0.00 0.00 39.30 3.56
3168 3258 1.508088 CAAGGCGGGTTGAGCATTC 59.492 57.895 0.00 0.00 36.41 2.67
3169 3259 1.074775 AAGGCGGGTTGAGCATTCA 59.925 52.632 0.00 0.00 32.95 2.57
3170 3260 0.323725 AAGGCGGGTTGAGCATTCAT 60.324 50.000 0.00 0.00 32.95 2.57
3171 3261 1.033746 AGGCGGGTTGAGCATTCATG 61.034 55.000 0.00 0.00 36.08 3.07
3172 3262 1.031571 GGCGGGTTGAGCATTCATGA 61.032 55.000 0.00 0.00 36.08 3.07
3173 3263 0.099436 GCGGGTTGAGCATTCATGAC 59.901 55.000 0.00 0.00 32.27 3.06
3174 3264 0.734889 CGGGTTGAGCATTCATGACC 59.265 55.000 0.00 0.00 34.69 4.02
3175 3265 1.679944 CGGGTTGAGCATTCATGACCT 60.680 52.381 0.00 0.00 35.45 3.85
3176 3266 2.450476 GGGTTGAGCATTCATGACCTT 58.550 47.619 0.00 0.00 35.45 3.50
3177 3267 2.165030 GGGTTGAGCATTCATGACCTTG 59.835 50.000 0.00 0.00 35.45 3.61
3178 3268 3.084039 GGTTGAGCATTCATGACCTTGA 58.916 45.455 0.00 0.00 33.31 3.02
3179 3269 3.128242 GGTTGAGCATTCATGACCTTGAG 59.872 47.826 0.00 0.00 33.31 3.02
3180 3270 2.995283 TGAGCATTCATGACCTTGAGG 58.005 47.619 0.00 0.00 42.17 3.86
3181 3271 3.245016 TTGAGCATTCATGACCTTGAGGT 60.245 43.478 1.47 1.47 41.62 3.85
3182 3272 4.750717 TTGAGCATTCATGACCTTGAGGTT 60.751 41.667 3.83 0.00 40.04 3.50
3183 3273 5.514659 TTGAGCATTCATGACCTTGAGGTTA 60.515 40.000 3.83 0.06 40.04 2.85
3184 3274 6.971649 TTGAGCATTCATGACCTTGAGGTTAA 60.972 38.462 3.83 0.00 40.04 2.01
3185 3275 8.705810 TTGAGCATTCATGACCTTGAGGTTAAG 61.706 40.741 3.83 0.00 40.04 1.85
3194 3284 3.821748 CCTTGAGGTTAAGAATAGGGCC 58.178 50.000 0.00 0.00 0.00 5.80
3195 3285 3.435169 CCTTGAGGTTAAGAATAGGGCCC 60.435 52.174 16.46 16.46 0.00 5.80
3196 3286 3.145559 TGAGGTTAAGAATAGGGCCCT 57.854 47.619 31.35 31.35 0.00 5.19
3197 3287 3.046374 TGAGGTTAAGAATAGGGCCCTC 58.954 50.000 32.80 15.65 37.97 4.30
3198 3288 2.372504 GAGGTTAAGAATAGGGCCCTCC 59.627 54.545 32.80 21.20 32.64 4.30
3200 3290 2.784095 GGTTAAGAATAGGGCCCTCCTT 59.216 50.000 32.80 28.99 45.47 3.36
3201 3291 3.435169 GGTTAAGAATAGGGCCCTCCTTG 60.435 52.174 32.80 0.00 45.47 3.61
3202 3292 1.226311 AAGAATAGGGCCCTCCTTGG 58.774 55.000 32.80 0.00 45.47 3.61
3210 3300 4.872293 CCCTCCTTGGCAAATGGT 57.128 55.556 0.00 0.00 0.00 3.55
3211 3301 3.071671 CCCTCCTTGGCAAATGGTT 57.928 52.632 0.00 0.00 0.00 3.67
3212 3302 0.609662 CCCTCCTTGGCAAATGGTTG 59.390 55.000 0.00 0.00 37.83 3.77
3213 3303 1.341080 CCTCCTTGGCAAATGGTTGT 58.659 50.000 0.00 0.00 37.06 3.32
3214 3304 1.693606 CCTCCTTGGCAAATGGTTGTT 59.306 47.619 0.00 0.00 37.06 2.83
3215 3305 2.104622 CCTCCTTGGCAAATGGTTGTTT 59.895 45.455 0.00 0.00 37.06 2.83
3216 3306 3.323403 CCTCCTTGGCAAATGGTTGTTTA 59.677 43.478 0.00 0.00 37.06 2.01
3217 3307 4.202305 CCTCCTTGGCAAATGGTTGTTTAA 60.202 41.667 0.00 0.00 37.06 1.52
3218 3308 5.359194 TCCTTGGCAAATGGTTGTTTAAA 57.641 34.783 0.00 0.00 37.06 1.52
3219 3309 5.934781 TCCTTGGCAAATGGTTGTTTAAAT 58.065 33.333 0.00 0.00 37.06 1.40
3220 3310 6.360618 TCCTTGGCAAATGGTTGTTTAAATT 58.639 32.000 0.00 0.00 37.06 1.82
3221 3311 7.509546 TCCTTGGCAAATGGTTGTTTAAATTA 58.490 30.769 0.00 0.00 37.06 1.40
3222 3312 7.442666 TCCTTGGCAAATGGTTGTTTAAATTAC 59.557 33.333 0.00 0.00 37.06 1.89
3223 3313 7.443879 CCTTGGCAAATGGTTGTTTAAATTACT 59.556 33.333 0.00 0.00 37.06 2.24
3224 3314 7.721286 TGGCAAATGGTTGTTTAAATTACTG 57.279 32.000 0.00 0.00 37.06 2.74
3225 3315 7.500992 TGGCAAATGGTTGTTTAAATTACTGA 58.499 30.769 0.00 0.00 37.06 3.41
3226 3316 7.439655 TGGCAAATGGTTGTTTAAATTACTGAC 59.560 33.333 0.00 0.00 37.06 3.51
3227 3317 7.095397 GGCAAATGGTTGTTTAAATTACTGACC 60.095 37.037 0.00 0.00 37.06 4.02
3228 3318 7.095397 GCAAATGGTTGTTTAAATTACTGACCC 60.095 37.037 0.00 0.00 37.06 4.46
3229 3319 7.604657 AATGGTTGTTTAAATTACTGACCCA 57.395 32.000 0.00 0.00 0.00 4.51
3230 3320 7.604657 ATGGTTGTTTAAATTACTGACCCAA 57.395 32.000 0.00 0.00 0.00 4.12
3231 3321 7.045126 TGGTTGTTTAAATTACTGACCCAAG 57.955 36.000 0.00 0.00 0.00 3.61
3232 3322 6.834451 TGGTTGTTTAAATTACTGACCCAAGA 59.166 34.615 0.00 0.00 0.00 3.02
3233 3323 7.507616 TGGTTGTTTAAATTACTGACCCAAGAT 59.492 33.333 0.00 0.00 0.00 2.40
3234 3324 7.812669 GGTTGTTTAAATTACTGACCCAAGATG 59.187 37.037 0.00 0.00 0.00 2.90
3235 3325 7.461182 TGTTTAAATTACTGACCCAAGATGG 57.539 36.000 0.00 0.00 37.25 3.51
3236 3326 7.007723 TGTTTAAATTACTGACCCAAGATGGT 58.992 34.615 0.00 0.00 42.79 3.55
3237 3327 7.040062 TGTTTAAATTACTGACCCAAGATGGTG 60.040 37.037 0.00 0.00 39.24 4.17
3238 3328 4.657814 AATTACTGACCCAAGATGGTGT 57.342 40.909 0.00 0.00 39.24 4.16
3239 3329 5.772393 AATTACTGACCCAAGATGGTGTA 57.228 39.130 0.00 0.00 39.24 2.90
3240 3330 5.975988 ATTACTGACCCAAGATGGTGTAT 57.024 39.130 0.00 0.00 39.24 2.29
3241 3331 3.634397 ACTGACCCAAGATGGTGTATG 57.366 47.619 0.00 0.00 39.24 2.39
3242 3332 2.239654 ACTGACCCAAGATGGTGTATGG 59.760 50.000 0.00 0.00 39.24 2.74
3243 3333 1.064758 TGACCCAAGATGGTGTATGGC 60.065 52.381 0.00 0.00 39.24 4.40
3244 3334 0.998928 ACCCAAGATGGTGTATGGCA 59.001 50.000 0.00 0.00 37.20 4.92
3245 3335 1.357420 ACCCAAGATGGTGTATGGCAA 59.643 47.619 0.00 0.00 37.20 4.52
3246 3336 2.225242 ACCCAAGATGGTGTATGGCAAA 60.225 45.455 0.00 0.00 37.20 3.68
3247 3337 2.166254 CCCAAGATGGTGTATGGCAAAC 59.834 50.000 0.00 0.00 35.17 2.93
3248 3338 2.166254 CCAAGATGGTGTATGGCAAACC 59.834 50.000 9.70 9.70 31.35 3.27
3259 3349 2.205022 TGGCAAACCATCCTGAGAAG 57.795 50.000 0.00 0.00 42.67 2.85
3260 3350 1.272092 TGGCAAACCATCCTGAGAAGG 60.272 52.381 0.00 0.00 42.67 3.46
3261 3351 1.004745 GGCAAACCATCCTGAGAAGGA 59.995 52.381 0.00 0.00 42.91 3.36
3262 3352 2.555227 GGCAAACCATCCTGAGAAGGAA 60.555 50.000 0.00 0.00 41.90 3.36
3263 3353 3.157087 GCAAACCATCCTGAGAAGGAAA 58.843 45.455 0.00 0.00 41.90 3.13
3264 3354 3.766051 GCAAACCATCCTGAGAAGGAAAT 59.234 43.478 0.00 0.00 41.90 2.17
3265 3355 4.949856 GCAAACCATCCTGAGAAGGAAATA 59.050 41.667 0.00 0.00 41.90 1.40
3266 3356 5.595952 GCAAACCATCCTGAGAAGGAAATAT 59.404 40.000 0.00 0.00 41.90 1.28
3267 3357 6.460676 GCAAACCATCCTGAGAAGGAAATATG 60.461 42.308 0.00 0.00 41.90 1.78
3268 3358 5.983333 ACCATCCTGAGAAGGAAATATGT 57.017 39.130 0.00 0.00 41.90 2.29
3269 3359 5.688807 ACCATCCTGAGAAGGAAATATGTG 58.311 41.667 0.00 0.00 41.90 3.21
3270 3360 5.068636 CCATCCTGAGAAGGAAATATGTGG 58.931 45.833 0.00 0.00 41.90 4.17
3271 3361 4.778213 TCCTGAGAAGGAAATATGTGGG 57.222 45.455 0.00 0.00 34.56 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.098050 CAAGGGGCTCGATCTTTTGG 58.902 55.000 0.00 0.00 0.00 3.28
1 2 2.012673 CTCAAGGGGCTCGATCTTTTG 58.987 52.381 0.00 0.00 0.00 2.44
2 3 1.630878 ACTCAAGGGGCTCGATCTTTT 59.369 47.619 0.00 0.00 0.00 2.27
3 4 1.280457 ACTCAAGGGGCTCGATCTTT 58.720 50.000 0.00 0.00 0.00 2.52
4 5 1.208293 GAACTCAAGGGGCTCGATCTT 59.792 52.381 0.00 0.00 0.00 2.40
5 6 0.827368 GAACTCAAGGGGCTCGATCT 59.173 55.000 0.00 0.00 0.00 2.75
6 7 0.537188 TGAACTCAAGGGGCTCGATC 59.463 55.000 0.00 0.00 0.00 3.69
7 8 1.134280 CATGAACTCAAGGGGCTCGAT 60.134 52.381 0.00 0.00 0.00 3.59
8 9 0.250234 CATGAACTCAAGGGGCTCGA 59.750 55.000 0.00 0.00 0.00 4.04
9 10 1.372087 GCATGAACTCAAGGGGCTCG 61.372 60.000 0.00 0.00 0.00 5.03
10 11 1.034292 GGCATGAACTCAAGGGGCTC 61.034 60.000 0.00 0.00 0.00 4.70
11 12 1.000396 GGCATGAACTCAAGGGGCT 60.000 57.895 0.00 0.00 0.00 5.19
12 13 0.255890 TAGGCATGAACTCAAGGGGC 59.744 55.000 0.00 0.00 0.00 5.80
13 14 1.281867 TGTAGGCATGAACTCAAGGGG 59.718 52.381 0.00 0.00 0.00 4.79
14 15 2.787473 TGTAGGCATGAACTCAAGGG 57.213 50.000 0.00 0.00 0.00 3.95
15 16 3.119708 GCTTTGTAGGCATGAACTCAAGG 60.120 47.826 0.00 3.10 0.00 3.61
16 17 3.119708 GGCTTTGTAGGCATGAACTCAAG 60.120 47.826 0.00 0.00 45.79 3.02
17 18 2.819608 GGCTTTGTAGGCATGAACTCAA 59.180 45.455 0.00 0.00 45.79 3.02
18 19 2.436417 GGCTTTGTAGGCATGAACTCA 58.564 47.619 0.00 0.00 45.79 3.41
27 28 2.289565 GTATCTGTGGGCTTTGTAGGC 58.710 52.381 0.00 0.00 45.78 3.93
28 29 2.550978 CGTATCTGTGGGCTTTGTAGG 58.449 52.381 0.00 0.00 0.00 3.18
29 30 2.550978 CCGTATCTGTGGGCTTTGTAG 58.449 52.381 0.00 0.00 0.00 2.74
30 31 1.406341 GCCGTATCTGTGGGCTTTGTA 60.406 52.381 0.00 0.00 43.52 2.41
31 32 0.676782 GCCGTATCTGTGGGCTTTGT 60.677 55.000 0.00 0.00 43.52 2.83
32 33 1.376609 GGCCGTATCTGTGGGCTTTG 61.377 60.000 0.93 0.00 46.62 2.77
33 34 1.077716 GGCCGTATCTGTGGGCTTT 60.078 57.895 0.93 0.00 46.62 3.51
34 35 2.590092 GGCCGTATCTGTGGGCTT 59.410 61.111 0.93 0.00 46.62 4.35
37 38 2.189521 GGTGGCCGTATCTGTGGG 59.810 66.667 0.00 0.00 0.00 4.61
38 39 2.189521 GGGTGGCCGTATCTGTGG 59.810 66.667 0.00 0.00 0.00 4.17
39 40 1.449601 GTGGGTGGCCGTATCTGTG 60.450 63.158 0.00 0.00 0.00 3.66
40 41 2.987125 GTGGGTGGCCGTATCTGT 59.013 61.111 0.00 0.00 0.00 3.41
41 42 2.202878 CGTGGGTGGCCGTATCTG 60.203 66.667 0.00 0.00 0.00 2.90
42 43 4.157120 GCGTGGGTGGCCGTATCT 62.157 66.667 0.00 0.00 0.00 1.98
43 44 3.750373 ATGCGTGGGTGGCCGTATC 62.750 63.158 0.00 0.00 0.00 2.24
44 45 3.750373 GATGCGTGGGTGGCCGTAT 62.750 63.158 0.00 0.00 32.05 3.06
45 46 4.460683 GATGCGTGGGTGGCCGTA 62.461 66.667 0.00 0.00 0.00 4.02
58 59 3.739782 GATGGGTTGTGCGCGATGC 62.740 63.158 12.10 0.00 46.70 3.91
59 60 2.404789 GATGGGTTGTGCGCGATG 59.595 61.111 12.10 0.00 0.00 3.84
60 61 2.824041 GGATGGGTTGTGCGCGAT 60.824 61.111 12.10 0.00 0.00 4.58
61 62 3.950794 GAGGATGGGTTGTGCGCGA 62.951 63.158 12.10 0.00 0.00 5.87
62 63 3.499737 GAGGATGGGTTGTGCGCG 61.500 66.667 0.00 0.00 0.00 6.86
63 64 3.134127 GGAGGATGGGTTGTGCGC 61.134 66.667 0.00 0.00 0.00 6.09
64 65 1.002134 AAGGAGGATGGGTTGTGCG 60.002 57.895 0.00 0.00 0.00 5.34
65 66 0.038166 TGAAGGAGGATGGGTTGTGC 59.962 55.000 0.00 0.00 0.00 4.57
66 67 1.352352 AGTGAAGGAGGATGGGTTGTG 59.648 52.381 0.00 0.00 0.00 3.33
67 68 1.352352 CAGTGAAGGAGGATGGGTTGT 59.648 52.381 0.00 0.00 0.00 3.32
68 69 1.630369 TCAGTGAAGGAGGATGGGTTG 59.370 52.381 0.00 0.00 0.00 3.77
69 70 1.912043 CTCAGTGAAGGAGGATGGGTT 59.088 52.381 0.00 0.00 0.00 4.11
70 71 1.203364 ACTCAGTGAAGGAGGATGGGT 60.203 52.381 0.00 0.00 36.70 4.51
71 72 1.577736 ACTCAGTGAAGGAGGATGGG 58.422 55.000 0.00 0.00 36.70 4.00
72 73 3.370104 AGTACTCAGTGAAGGAGGATGG 58.630 50.000 0.00 0.00 36.70 3.51
73 74 4.019858 TGAGTACTCAGTGAAGGAGGATG 58.980 47.826 21.74 0.00 36.70 3.51
74 75 4.323569 TGAGTACTCAGTGAAGGAGGAT 57.676 45.455 21.74 0.00 36.70 3.24
75 76 3.808834 TGAGTACTCAGTGAAGGAGGA 57.191 47.619 21.74 0.00 36.70 3.71
76 77 3.383185 GGATGAGTACTCAGTGAAGGAGG 59.617 52.174 28.29 0.00 43.61 4.30
77 78 4.019858 TGGATGAGTACTCAGTGAAGGAG 58.980 47.826 28.29 0.00 43.61 3.69
78 79 4.047627 TGGATGAGTACTCAGTGAAGGA 57.952 45.455 28.29 4.78 43.61 3.36
79 80 4.498850 CGATGGATGAGTACTCAGTGAAGG 60.499 50.000 28.29 13.81 43.61 3.46
80 81 4.097135 ACGATGGATGAGTACTCAGTGAAG 59.903 45.833 28.29 19.31 43.61 3.02
81 82 4.017126 ACGATGGATGAGTACTCAGTGAA 58.983 43.478 28.29 15.32 43.61 3.18
82 83 3.378427 CACGATGGATGAGTACTCAGTGA 59.622 47.826 28.29 15.54 43.61 3.41
83 84 3.700154 CACGATGGATGAGTACTCAGTG 58.300 50.000 28.29 23.61 43.61 3.66
84 85 2.099921 GCACGATGGATGAGTACTCAGT 59.900 50.000 28.29 17.49 43.61 3.41
85 86 2.360483 AGCACGATGGATGAGTACTCAG 59.640 50.000 28.29 16.88 43.61 3.35
86 87 2.379005 AGCACGATGGATGAGTACTCA 58.621 47.619 27.07 27.07 44.59 3.41
87 88 3.119291 CAAGCACGATGGATGAGTACTC 58.881 50.000 16.32 16.32 0.00 2.59
88 89 2.760650 TCAAGCACGATGGATGAGTACT 59.239 45.455 0.00 0.00 0.00 2.73
89 90 3.119291 CTCAAGCACGATGGATGAGTAC 58.881 50.000 0.00 0.00 34.29 2.73
90 91 3.023832 TCTCAAGCACGATGGATGAGTA 58.976 45.455 0.00 0.00 38.83 2.59
91 92 1.827344 TCTCAAGCACGATGGATGAGT 59.173 47.619 0.00 0.00 38.83 3.41
92 93 2.591571 TCTCAAGCACGATGGATGAG 57.408 50.000 0.00 0.00 39.04 2.90
93 94 2.028203 TGTTCTCAAGCACGATGGATGA 60.028 45.455 0.00 0.00 0.00 2.92
94 95 2.349590 TGTTCTCAAGCACGATGGATG 58.650 47.619 0.00 0.00 0.00 3.51
95 96 2.744202 GTTGTTCTCAAGCACGATGGAT 59.256 45.455 0.00 0.00 33.97 3.41
96 97 2.143122 GTTGTTCTCAAGCACGATGGA 58.857 47.619 0.00 0.00 33.97 3.41
97 98 1.136252 CGTTGTTCTCAAGCACGATGG 60.136 52.381 0.00 0.00 33.97 3.51
98 99 1.792367 TCGTTGTTCTCAAGCACGATG 59.208 47.619 0.00 0.00 33.97 3.84
99 100 2.061773 CTCGTTGTTCTCAAGCACGAT 58.938 47.619 0.00 0.00 32.28 3.73
100 101 1.066454 TCTCGTTGTTCTCAAGCACGA 59.934 47.619 0.00 0.00 33.97 4.35
101 102 1.487482 TCTCGTTGTTCTCAAGCACG 58.513 50.000 0.00 0.00 33.97 5.34
102 103 2.866762 ACTTCTCGTTGTTCTCAAGCAC 59.133 45.455 0.00 0.00 33.97 4.40
103 104 3.123804 GACTTCTCGTTGTTCTCAAGCA 58.876 45.455 0.00 0.00 33.97 3.91
104 105 2.476997 GGACTTCTCGTTGTTCTCAAGC 59.523 50.000 0.00 0.00 33.97 4.01
105 106 3.717707 TGGACTTCTCGTTGTTCTCAAG 58.282 45.455 0.00 0.00 33.97 3.02
106 107 3.812156 TGGACTTCTCGTTGTTCTCAA 57.188 42.857 0.00 0.00 0.00 3.02
107 108 3.812156 TTGGACTTCTCGTTGTTCTCA 57.188 42.857 0.00 0.00 0.00 3.27
108 109 4.809426 TCTTTTGGACTTCTCGTTGTTCTC 59.191 41.667 0.00 0.00 0.00 2.87
109 110 4.766375 TCTTTTGGACTTCTCGTTGTTCT 58.234 39.130 0.00 0.00 0.00 3.01
110 111 5.479716 TTCTTTTGGACTTCTCGTTGTTC 57.520 39.130 0.00 0.00 0.00 3.18
111 112 5.890424 TTTCTTTTGGACTTCTCGTTGTT 57.110 34.783 0.00 0.00 0.00 2.83
112 113 5.890424 TTTTCTTTTGGACTTCTCGTTGT 57.110 34.783 0.00 0.00 0.00 3.32
113 114 5.230097 GCTTTTTCTTTTGGACTTCTCGTTG 59.770 40.000 0.00 0.00 0.00 4.10
114 115 5.125578 AGCTTTTTCTTTTGGACTTCTCGTT 59.874 36.000 0.00 0.00 0.00 3.85
115 116 4.640647 AGCTTTTTCTTTTGGACTTCTCGT 59.359 37.500 0.00 0.00 0.00 4.18
116 117 5.175090 AGCTTTTTCTTTTGGACTTCTCG 57.825 39.130 0.00 0.00 0.00 4.04
117 118 6.136541 TGAGCTTTTTCTTTTGGACTTCTC 57.863 37.500 0.00 0.00 0.00 2.87
118 119 6.530019 TTGAGCTTTTTCTTTTGGACTTCT 57.470 33.333 0.00 0.00 0.00 2.85
119 120 6.201615 CCATTGAGCTTTTTCTTTTGGACTTC 59.798 38.462 0.00 0.00 0.00 3.01
120 121 6.051074 CCATTGAGCTTTTTCTTTTGGACTT 58.949 36.000 0.00 0.00 0.00 3.01
121 122 5.604565 CCATTGAGCTTTTTCTTTTGGACT 58.395 37.500 0.00 0.00 0.00 3.85
122 123 4.212004 GCCATTGAGCTTTTTCTTTTGGAC 59.788 41.667 0.00 0.00 0.00 4.02
123 124 4.141756 TGCCATTGAGCTTTTTCTTTTGGA 60.142 37.500 0.00 0.00 0.00 3.53
124 125 4.128643 TGCCATTGAGCTTTTTCTTTTGG 58.871 39.130 0.00 0.00 0.00 3.28
125 126 5.934935 ATGCCATTGAGCTTTTTCTTTTG 57.065 34.783 0.00 0.00 0.00 2.44
126 127 6.543100 TCAAATGCCATTGAGCTTTTTCTTTT 59.457 30.769 0.00 0.00 37.85 2.27
127 128 6.017687 GTCAAATGCCATTGAGCTTTTTCTTT 60.018 34.615 1.83 0.00 39.84 2.52
128 129 5.467735 GTCAAATGCCATTGAGCTTTTTCTT 59.532 36.000 1.83 0.00 39.84 2.52
129 130 4.992951 GTCAAATGCCATTGAGCTTTTTCT 59.007 37.500 1.83 0.00 39.84 2.52
130 131 4.751098 TGTCAAATGCCATTGAGCTTTTTC 59.249 37.500 1.83 6.19 39.84 2.29
131 132 4.706035 TGTCAAATGCCATTGAGCTTTTT 58.294 34.783 1.83 2.72 39.84 1.94
132 133 4.039488 TCTGTCAAATGCCATTGAGCTTTT 59.961 37.500 1.83 5.66 39.84 2.27
133 134 3.575256 TCTGTCAAATGCCATTGAGCTTT 59.425 39.130 1.83 0.00 39.84 3.51
134 135 3.159472 TCTGTCAAATGCCATTGAGCTT 58.841 40.909 1.83 0.00 39.84 3.74
135 136 2.799017 TCTGTCAAATGCCATTGAGCT 58.201 42.857 1.83 0.00 39.84 4.09
136 137 3.248266 GTTCTGTCAAATGCCATTGAGC 58.752 45.455 1.83 0.00 39.84 4.26
137 138 4.232221 GTGTTCTGTCAAATGCCATTGAG 58.768 43.478 1.83 0.00 39.84 3.02
138 139 3.005684 GGTGTTCTGTCAAATGCCATTGA 59.994 43.478 0.00 0.00 36.99 2.57
139 140 3.006110 AGGTGTTCTGTCAAATGCCATTG 59.994 43.478 0.00 0.00 0.00 2.82
140 141 3.006110 CAGGTGTTCTGTCAAATGCCATT 59.994 43.478 0.00 0.00 38.64 3.16
141 142 2.559668 CAGGTGTTCTGTCAAATGCCAT 59.440 45.455 0.00 0.00 38.64 4.40
142 143 1.955778 CAGGTGTTCTGTCAAATGCCA 59.044 47.619 0.00 0.00 38.64 4.92
143 144 1.336240 GCAGGTGTTCTGTCAAATGCC 60.336 52.381 0.00 0.00 45.08 4.40
144 145 1.336240 GGCAGGTGTTCTGTCAAATGC 60.336 52.381 0.00 0.00 46.81 3.56
145 146 2.712057 GGCAGGTGTTCTGTCAAATG 57.288 50.000 0.00 0.00 46.81 2.32
150 151 2.358737 CCCGGCAGGTGTTCTGTC 60.359 66.667 1.11 0.00 45.08 3.51
151 152 4.643387 GCCCGGCAGGTGTTCTGT 62.643 66.667 3.91 0.00 45.08 3.41
152 153 3.925630 ATGCCCGGCAGGTGTTCTG 62.926 63.158 18.96 0.00 43.65 3.02
153 154 3.650950 ATGCCCGGCAGGTGTTCT 61.651 61.111 18.96 0.00 43.65 3.01
154 155 3.443045 CATGCCCGGCAGGTGTTC 61.443 66.667 18.96 0.00 43.65 3.18
165 166 2.114670 CATGACGGACACCATGCCC 61.115 63.158 0.00 0.00 34.52 5.36
166 167 0.676466 TTCATGACGGACACCATGCC 60.676 55.000 0.00 0.00 39.82 4.40
167 168 0.447801 GTTCATGACGGACACCATGC 59.552 55.000 0.00 0.00 39.82 4.06
194 195 2.960359 GATACCCTTCGCCCCCTTGC 62.960 65.000 0.00 0.00 0.00 4.01
195 196 1.148498 GATACCCTTCGCCCCCTTG 59.852 63.158 0.00 0.00 0.00 3.61
196 197 1.004361 AGATACCCTTCGCCCCCTT 59.996 57.895 0.00 0.00 0.00 3.95
197 198 1.766461 CAGATACCCTTCGCCCCCT 60.766 63.158 0.00 0.00 0.00 4.79
198 199 2.819284 CCAGATACCCTTCGCCCCC 61.819 68.421 0.00 0.00 0.00 5.40
199 200 2.829592 CCAGATACCCTTCGCCCC 59.170 66.667 0.00 0.00 0.00 5.80
200 201 1.119574 TAGCCAGATACCCTTCGCCC 61.120 60.000 0.00 0.00 0.00 6.13
201 202 0.977395 ATAGCCAGATACCCTTCGCC 59.023 55.000 0.00 0.00 0.00 5.54
202 203 1.402984 CGATAGCCAGATACCCTTCGC 60.403 57.143 0.00 0.00 0.00 4.70
203 204 2.160205 TCGATAGCCAGATACCCTTCG 58.840 52.381 0.00 0.00 0.00 3.79
204 205 2.494073 CCTCGATAGCCAGATACCCTTC 59.506 54.545 0.00 0.00 0.00 3.46
205 206 2.530701 CCTCGATAGCCAGATACCCTT 58.469 52.381 0.00 0.00 0.00 3.95
206 207 1.272760 CCCTCGATAGCCAGATACCCT 60.273 57.143 0.00 0.00 0.00 4.34
219 220 1.460305 CCACCCAGGATCCCTCGAT 60.460 63.158 8.55 0.00 41.22 3.59
276 277 1.934589 TCATAGGACATTCGCAACCG 58.065 50.000 0.00 0.00 0.00 4.44
279 280 2.916640 TGCATCATAGGACATTCGCAA 58.083 42.857 0.00 0.00 0.00 4.85
286 287 1.585297 CGCACATGCATCATAGGACA 58.415 50.000 0.00 0.00 42.21 4.02
293 294 3.442167 GCCACCGCACATGCATCA 61.442 61.111 0.00 0.00 42.21 3.07
304 305 3.365265 GCACCTTTCCAGCCACCG 61.365 66.667 0.00 0.00 0.00 4.94
310 311 2.605338 CGTTGTCAATGCACCTTTCCAG 60.605 50.000 0.00 0.00 0.00 3.86
313 314 1.408422 GCGTTGTCAATGCACCTTTC 58.592 50.000 22.23 0.00 42.93 2.62
335 336 3.148279 ATCCGCACCCTCCTCGTC 61.148 66.667 0.00 0.00 0.00 4.20
350 351 5.925509 TCTATACCCCTGTTACTTTGCATC 58.074 41.667 0.00 0.00 0.00 3.91
372 373 3.558109 CCACTTTTCTTCCACTCCTCCTC 60.558 52.174 0.00 0.00 0.00 3.71
378 379 3.142174 CTGGTCCACTTTTCTTCCACTC 58.858 50.000 0.00 0.00 0.00 3.51
396 397 3.325135 ACCCACTTAAGTCTCACTTCTGG 59.675 47.826 4.77 0.51 39.51 3.86
397 398 4.561105 GACCCACTTAAGTCTCACTTCTG 58.439 47.826 4.77 0.00 39.51 3.02
411 412 2.214920 GGACACCCTCGACCCACTT 61.215 63.158 0.00 0.00 0.00 3.16
420 421 2.358267 CACATAGTACTCGGACACCCTC 59.642 54.545 0.00 0.00 0.00 4.30
421 422 2.376109 CACATAGTACTCGGACACCCT 58.624 52.381 0.00 0.00 0.00 4.34
434 435 2.987125 GGACCACCGCCACATAGT 59.013 61.111 0.00 0.00 0.00 2.12
481 487 2.535588 CGGACGTCCATTTTTCCGT 58.464 52.632 32.80 0.00 44.90 4.69
517 539 5.583457 CCAGGTTATCCGAACTCGTTTTAAT 59.417 40.000 0.00 0.00 39.05 1.40
524 546 1.749634 AGACCAGGTTATCCGAACTCG 59.250 52.381 0.00 0.00 39.05 4.18
525 547 2.159085 CCAGACCAGGTTATCCGAACTC 60.159 54.545 0.00 0.00 39.05 3.01
534 556 1.490490 GCATCCATCCAGACCAGGTTA 59.510 52.381 0.00 0.00 0.00 2.85
538 560 1.227764 CCGCATCCATCCAGACCAG 60.228 63.158 0.00 0.00 0.00 4.00
539 561 2.745308 CCCGCATCCATCCAGACCA 61.745 63.158 0.00 0.00 0.00 4.02
546 568 1.605710 CTCAAATCACCCGCATCCATC 59.394 52.381 0.00 0.00 0.00 3.51
558 580 3.387374 GGCATCTCCTCTCTCTCAAATCA 59.613 47.826 0.00 0.00 0.00 2.57
567 589 3.019799 TCGTTAAGGCATCTCCTCTCT 57.980 47.619 0.00 0.00 46.94 3.10
568 590 3.449632 GTTCGTTAAGGCATCTCCTCTC 58.550 50.000 0.00 0.00 46.94 3.20
570 592 2.168728 AGGTTCGTTAAGGCATCTCCTC 59.831 50.000 0.00 0.00 46.94 3.71
580 602 6.548441 TGACCAAATTGTAGGTTCGTTAAG 57.452 37.500 0.00 0.00 38.50 1.85
581 603 8.505625 GTTATGACCAAATTGTAGGTTCGTTAA 58.494 33.333 0.00 0.00 38.50 2.01
595 617 5.296780 CGTGGCTTATGAGTTATGACCAAAT 59.703 40.000 0.00 0.00 0.00 2.32
614 636 2.280797 TGGTTCAGTGCTCGTGGC 60.281 61.111 0.00 0.00 42.22 5.01
641 684 0.963856 TATCGGACGAGCACACTGGT 60.964 55.000 0.00 0.00 37.59 4.00
642 685 0.525668 GTATCGGACGAGCACACTGG 60.526 60.000 0.00 0.00 0.00 4.00
643 686 0.170339 TGTATCGGACGAGCACACTG 59.830 55.000 0.00 0.00 0.00 3.66
644 687 0.885879 TTGTATCGGACGAGCACACT 59.114 50.000 10.30 0.00 0.00 3.55
645 688 1.922570 ATTGTATCGGACGAGCACAC 58.077 50.000 10.30 2.71 0.00 3.82
646 689 2.536365 GAATTGTATCGGACGAGCACA 58.464 47.619 0.00 4.38 0.00 4.57
647 690 1.859080 GGAATTGTATCGGACGAGCAC 59.141 52.381 0.00 1.77 0.00 4.40
648 691 1.535226 CGGAATTGTATCGGACGAGCA 60.535 52.381 0.00 0.00 0.00 4.26
649 692 1.129326 CGGAATTGTATCGGACGAGC 58.871 55.000 0.00 0.00 0.00 5.03
650 693 1.767289 CCGGAATTGTATCGGACGAG 58.233 55.000 0.00 0.00 45.96 4.18
651 694 0.249155 GCCGGAATTGTATCGGACGA 60.249 55.000 5.05 0.00 45.96 4.20
652 695 0.528901 TGCCGGAATTGTATCGGACG 60.529 55.000 5.05 0.00 45.96 4.79
653 696 1.217882 CTGCCGGAATTGTATCGGAC 58.782 55.000 5.05 0.00 45.96 4.79
654 697 0.531974 GCTGCCGGAATTGTATCGGA 60.532 55.000 5.05 0.00 45.96 4.55
655 698 0.532862 AGCTGCCGGAATTGTATCGG 60.533 55.000 5.05 0.00 45.84 4.18
656 699 0.861837 GAGCTGCCGGAATTGTATCG 59.138 55.000 5.05 0.00 0.00 2.92
657 700 0.861837 CGAGCTGCCGGAATTGTATC 59.138 55.000 5.05 0.00 0.00 2.24
658 701 1.160329 GCGAGCTGCCGGAATTGTAT 61.160 55.000 5.05 0.00 37.76 2.29
730 776 3.688159 GGGTACCGGTGCGTGAGT 61.688 66.667 19.93 0.00 40.86 3.41
743 789 3.966979 TCTATACGTCTTGTGGTGGGTA 58.033 45.455 0.00 0.00 0.00 3.69
778 846 2.036958 TGGTCCATGGAAATGCTACG 57.963 50.000 18.20 0.00 0.00 3.51
781 849 2.450476 GACTTGGTCCATGGAAATGCT 58.550 47.619 18.20 0.00 0.00 3.79
782 850 2.947448 GACTTGGTCCATGGAAATGC 57.053 50.000 18.20 3.41 0.00 3.56
840 909 1.072505 GCCGTTCTGTGAAGGGGAA 59.927 57.895 17.20 0.00 0.00 3.97
841 910 2.111999 CTGCCGTTCTGTGAAGGGGA 62.112 60.000 17.20 14.41 0.00 4.81
862 931 1.375013 GGCAGCCTCGGTCGTTAAA 60.375 57.895 3.29 0.00 0.00 1.52
863 932 2.263540 GGCAGCCTCGGTCGTTAA 59.736 61.111 3.29 0.00 0.00 2.01
944 1013 0.251354 TGGCTGGTGAGATCTCTTGC 59.749 55.000 22.95 18.80 0.00 4.01
962 1031 0.527600 TCGGACGCAGGATCGAATTG 60.528 55.000 0.00 0.00 0.00 2.32
1362 1434 4.031129 CTGGCCTGGCTGAGCACT 62.031 66.667 19.68 0.00 0.00 4.40
2022 2094 3.222354 GAGCCCCACGAACACGACT 62.222 63.158 0.00 0.00 0.00 4.18
2238 2310 1.891919 ACCAAACATGTGCGCGAGT 60.892 52.632 12.10 0.00 0.00 4.18
2295 2367 1.559219 TGAGCATTCCCGAAGAATCCA 59.441 47.619 0.00 0.00 43.63 3.41
2305 2377 3.059352 AGTGTACACTTGAGCATTCCC 57.941 47.619 22.95 0.00 38.83 3.97
2316 2389 8.528643 TCAATGCTAATTACAGTAGTGTACACT 58.471 33.333 30.13 30.13 45.02 3.55
2317 2390 8.697846 TCAATGCTAATTACAGTAGTGTACAC 57.302 34.615 18.56 18.56 38.95 2.90
2318 2391 8.745590 TCTCAATGCTAATTACAGTAGTGTACA 58.254 33.333 10.01 5.32 38.95 2.90
2319 2392 9.021863 GTCTCAATGCTAATTACAGTAGTGTAC 57.978 37.037 10.01 0.00 38.95 2.90
2320 2393 8.195436 GGTCTCAATGCTAATTACAGTAGTGTA 58.805 37.037 6.31 6.31 38.19 2.90
2322 2395 6.480320 GGGTCTCAATGCTAATTACAGTAGTG 59.520 42.308 0.00 0.00 0.00 2.74
2323 2396 6.583562 GGGTCTCAATGCTAATTACAGTAGT 58.416 40.000 0.00 0.00 0.00 2.73
2324 2397 5.692204 CGGGTCTCAATGCTAATTACAGTAG 59.308 44.000 0.00 0.00 0.00 2.57
2368 2442 2.365617 AGATACTACCATGCCCAACTCG 59.634 50.000 0.00 0.00 0.00 4.18
2452 2526 9.778741 TGGGACATCTATTACAATACAGATTTC 57.221 33.333 0.00 0.00 0.00 2.17
2466 2545 4.723309 GCTTGATCCTTGGGACATCTATT 58.277 43.478 0.00 0.00 39.30 1.73
2467 2546 3.244353 CGCTTGATCCTTGGGACATCTAT 60.244 47.826 0.00 0.00 39.30 1.98
2468 2547 2.103094 CGCTTGATCCTTGGGACATCTA 59.897 50.000 0.00 0.00 39.30 1.98
2476 2555 0.321564 TGTGGTCGCTTGATCCTTGG 60.322 55.000 0.00 0.00 0.00 3.61
2534 2615 9.598517 AATTTTAGACAAAAAGAACATCTTGCA 57.401 25.926 0.00 0.00 40.32 4.08
2542 2623 9.811995 ACCCTAACAATTTTAGACAAAAAGAAC 57.188 29.630 8.22 0.00 40.32 3.01
2810 2892 4.038642 AGACAGAGAACTTGAACAGAGGAC 59.961 45.833 0.00 0.00 0.00 3.85
2854 2937 5.596836 TTGCTCTTTGGTGAAAAATCAGT 57.403 34.783 0.00 0.00 0.00 3.41
2888 2974 2.897271 TAAATGTGGTCAGTGCCCAT 57.103 45.000 0.00 0.00 33.76 4.00
2946 3035 9.996554 TCTTTGTAATTCATCTGTCTAGTGAAA 57.003 29.630 0.00 0.00 35.70 2.69
2962 3052 9.905713 ATGACCACATATGTACTCTTTGTAATT 57.094 29.630 8.32 0.00 34.71 1.40
2982 3072 9.685276 ATCTATGTTTGTTTCTTATGATGACCA 57.315 29.630 0.00 0.00 0.00 4.02
3006 3096 5.532779 ACTGGAAGAAGGAAAACAAGACATC 59.467 40.000 0.00 0.00 37.43 3.06
3010 3100 4.097892 GCAACTGGAAGAAGGAAAACAAGA 59.902 41.667 0.00 0.00 37.43 3.02
3011 3101 4.363138 GCAACTGGAAGAAGGAAAACAAG 58.637 43.478 0.00 0.00 37.43 3.16
3012 3102 3.132111 GGCAACTGGAAGAAGGAAAACAA 59.868 43.478 0.00 0.00 37.43 2.83
3013 3103 2.693074 GGCAACTGGAAGAAGGAAAACA 59.307 45.455 0.00 0.00 37.43 2.83
3014 3104 2.287608 CGGCAACTGGAAGAAGGAAAAC 60.288 50.000 0.00 0.00 37.43 2.43
3015 3105 1.953686 CGGCAACTGGAAGAAGGAAAA 59.046 47.619 0.00 0.00 37.43 2.29
3016 3106 1.142060 TCGGCAACTGGAAGAAGGAAA 59.858 47.619 0.00 0.00 37.43 3.13
3017 3107 0.762418 TCGGCAACTGGAAGAAGGAA 59.238 50.000 0.00 0.00 37.43 3.36
3018 3108 0.762418 TTCGGCAACTGGAAGAAGGA 59.238 50.000 0.00 0.00 37.43 3.36
3019 3109 1.537202 CTTTCGGCAACTGGAAGAAGG 59.463 52.381 0.00 0.00 37.43 3.46
3020 3110 1.537202 CCTTTCGGCAACTGGAAGAAG 59.463 52.381 0.00 0.00 37.43 2.85
3021 3111 1.142060 TCCTTTCGGCAACTGGAAGAA 59.858 47.619 0.00 0.00 37.43 2.52
3022 3112 0.762418 TCCTTTCGGCAACTGGAAGA 59.238 50.000 0.00 0.00 37.43 2.87
3023 3113 1.160137 CTCCTTTCGGCAACTGGAAG 58.840 55.000 0.00 0.00 42.29 3.46
3024 3114 0.472471 ACTCCTTTCGGCAACTGGAA 59.528 50.000 0.00 0.00 0.00 3.53
3025 3115 0.472471 AACTCCTTTCGGCAACTGGA 59.528 50.000 0.00 0.00 0.00 3.86
3026 3116 0.875059 GAACTCCTTTCGGCAACTGG 59.125 55.000 0.00 0.00 0.00 4.00
3027 3117 1.884235 AGAACTCCTTTCGGCAACTG 58.116 50.000 0.00 0.00 39.47 3.16
3028 3118 2.609737 CGTAGAACTCCTTTCGGCAACT 60.610 50.000 0.00 0.00 39.47 3.16
3029 3119 1.725164 CGTAGAACTCCTTTCGGCAAC 59.275 52.381 0.00 0.00 39.47 4.17
3030 3120 1.342174 ACGTAGAACTCCTTTCGGCAA 59.658 47.619 0.00 0.00 39.47 4.52
3031 3121 0.963962 ACGTAGAACTCCTTTCGGCA 59.036 50.000 0.00 0.00 39.47 5.69
3032 3122 2.421424 TCTACGTAGAACTCCTTTCGGC 59.579 50.000 22.74 0.00 39.47 5.54
3033 3123 4.897025 ATCTACGTAGAACTCCTTTCGG 57.103 45.455 27.90 0.00 39.47 4.30
3034 3124 5.877031 TCAATCTACGTAGAACTCCTTTCG 58.123 41.667 27.90 11.65 39.47 3.46
3035 3125 8.705048 AATTCAATCTACGTAGAACTCCTTTC 57.295 34.615 27.90 0.00 35.69 2.62
3058 3148 9.387257 GCCAAAAGAATCTTGATTGGAAATAAT 57.613 29.630 23.50 0.00 42.46 1.28
3059 3149 8.373981 TGCCAAAAGAATCTTGATTGGAAATAA 58.626 29.630 23.50 6.45 42.46 1.40
3060 3150 7.905265 TGCCAAAAGAATCTTGATTGGAAATA 58.095 30.769 23.50 8.79 42.46 1.40
3061 3151 6.771573 TGCCAAAAGAATCTTGATTGGAAAT 58.228 32.000 23.50 0.00 42.46 2.17
3062 3152 6.172136 TGCCAAAAGAATCTTGATTGGAAA 57.828 33.333 23.50 12.03 42.46 3.13
3063 3153 5.804944 TGCCAAAAGAATCTTGATTGGAA 57.195 34.783 23.50 14.52 42.46 3.53
3064 3154 5.539574 TCTTGCCAAAAGAATCTTGATTGGA 59.460 36.000 23.50 10.67 42.46 3.53
3065 3155 5.786311 TCTTGCCAAAAGAATCTTGATTGG 58.214 37.500 17.75 17.75 42.68 3.16
3066 3156 7.718272 TTTCTTGCCAAAAGAATCTTGATTG 57.282 32.000 0.00 0.00 36.30 2.67
3067 3157 8.913487 ATTTTCTTGCCAAAAGAATCTTGATT 57.087 26.923 0.00 0.00 36.30 2.57
3068 3158 9.649167 CTATTTTCTTGCCAAAAGAATCTTGAT 57.351 29.630 0.00 0.00 36.30 2.57
3069 3159 7.599998 GCTATTTTCTTGCCAAAAGAATCTTGA 59.400 33.333 0.00 0.00 36.30 3.02
3070 3160 7.411157 CGCTATTTTCTTGCCAAAAGAATCTTG 60.411 37.037 0.00 0.00 36.30 3.02
3071 3161 6.587608 CGCTATTTTCTTGCCAAAAGAATCTT 59.412 34.615 1.64 0.00 36.30 2.40
3072 3162 6.071952 TCGCTATTTTCTTGCCAAAAGAATCT 60.072 34.615 1.64 0.00 36.30 2.40
3073 3163 6.092748 TCGCTATTTTCTTGCCAAAAGAATC 58.907 36.000 1.64 0.00 36.30 2.52
3074 3164 6.024552 TCGCTATTTTCTTGCCAAAAGAAT 57.975 33.333 1.64 0.00 36.30 2.40
3075 3165 5.240623 TCTCGCTATTTTCTTGCCAAAAGAA 59.759 36.000 0.00 0.00 34.73 2.52
3076 3166 4.759693 TCTCGCTATTTTCTTGCCAAAAGA 59.240 37.500 0.00 0.00 0.00 2.52
3077 3167 5.046910 TCTCGCTATTTTCTTGCCAAAAG 57.953 39.130 0.00 0.00 0.00 2.27
3078 3168 4.759693 TCTCTCGCTATTTTCTTGCCAAAA 59.240 37.500 0.00 0.00 0.00 2.44
3079 3169 4.323417 TCTCTCGCTATTTTCTTGCCAAA 58.677 39.130 0.00 0.00 0.00 3.28
3080 3170 3.937814 TCTCTCGCTATTTTCTTGCCAA 58.062 40.909 0.00 0.00 0.00 4.52
3081 3171 3.610040 TCTCTCGCTATTTTCTTGCCA 57.390 42.857 0.00 0.00 0.00 4.92
3082 3172 4.631813 TCTTTCTCTCGCTATTTTCTTGCC 59.368 41.667 0.00 0.00 0.00 4.52
3083 3173 5.786401 TCTTTCTCTCGCTATTTTCTTGC 57.214 39.130 0.00 0.00 0.00 4.01
3086 3176 8.973378 CGATATTTCTTTCTCTCGCTATTTTCT 58.027 33.333 0.00 0.00 0.00 2.52
3087 3177 8.969267 TCGATATTTCTTTCTCTCGCTATTTTC 58.031 33.333 0.00 0.00 0.00 2.29
3088 3178 8.756864 GTCGATATTTCTTTCTCTCGCTATTTT 58.243 33.333 0.00 0.00 0.00 1.82
3089 3179 8.138712 AGTCGATATTTCTTTCTCTCGCTATTT 58.861 33.333 0.00 0.00 0.00 1.40
3090 3180 7.653647 AGTCGATATTTCTTTCTCTCGCTATT 58.346 34.615 0.00 0.00 0.00 1.73
3091 3181 7.209471 AGTCGATATTTCTTTCTCTCGCTAT 57.791 36.000 0.00 0.00 0.00 2.97
3092 3182 6.621316 AGTCGATATTTCTTTCTCTCGCTA 57.379 37.500 0.00 0.00 0.00 4.26
3093 3183 5.508200 AGTCGATATTTCTTTCTCTCGCT 57.492 39.130 0.00 0.00 0.00 4.93
3094 3184 5.341196 GCTAGTCGATATTTCTTTCTCTCGC 59.659 44.000 0.00 0.00 0.00 5.03
3095 3185 6.664515 AGCTAGTCGATATTTCTTTCTCTCG 58.335 40.000 0.00 0.00 0.00 4.04
3096 3186 9.953697 TTTAGCTAGTCGATATTTCTTTCTCTC 57.046 33.333 0.00 0.00 0.00 3.20
3099 3189 9.482627 CCATTTAGCTAGTCGATATTTCTTTCT 57.517 33.333 0.00 0.00 0.00 2.52
3100 3190 9.477484 TCCATTTAGCTAGTCGATATTTCTTTC 57.523 33.333 0.00 0.00 0.00 2.62
3101 3191 9.482627 CTCCATTTAGCTAGTCGATATTTCTTT 57.517 33.333 0.00 0.00 0.00 2.52
3102 3192 8.643324 ACTCCATTTAGCTAGTCGATATTTCTT 58.357 33.333 0.00 0.00 0.00 2.52
3103 3193 8.085296 CACTCCATTTAGCTAGTCGATATTTCT 58.915 37.037 0.00 0.00 0.00 2.52
3104 3194 7.868415 ACACTCCATTTAGCTAGTCGATATTTC 59.132 37.037 0.00 0.00 0.00 2.17
3105 3195 7.653713 CACACTCCATTTAGCTAGTCGATATTT 59.346 37.037 0.00 0.00 0.00 1.40
3106 3196 7.148641 CACACTCCATTTAGCTAGTCGATATT 58.851 38.462 0.00 0.00 0.00 1.28
3107 3197 6.294787 CCACACTCCATTTAGCTAGTCGATAT 60.295 42.308 0.00 0.00 0.00 1.63
3108 3198 5.009710 CCACACTCCATTTAGCTAGTCGATA 59.990 44.000 0.00 0.00 0.00 2.92
3109 3199 4.202161 CCACACTCCATTTAGCTAGTCGAT 60.202 45.833 0.00 0.00 0.00 3.59
3110 3200 3.130516 CCACACTCCATTTAGCTAGTCGA 59.869 47.826 0.00 0.00 0.00 4.20
3111 3201 3.119101 ACCACACTCCATTTAGCTAGTCG 60.119 47.826 0.00 0.00 0.00 4.18
3112 3202 4.473477 ACCACACTCCATTTAGCTAGTC 57.527 45.455 0.00 0.00 0.00 2.59
3113 3203 4.910458 AACCACACTCCATTTAGCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
3114 3204 4.142600 GCAAACCACACTCCATTTAGCTAG 60.143 45.833 0.00 0.00 0.00 3.42
3115 3205 3.756434 GCAAACCACACTCCATTTAGCTA 59.244 43.478 0.00 0.00 0.00 3.32
3116 3206 2.558359 GCAAACCACACTCCATTTAGCT 59.442 45.455 0.00 0.00 0.00 3.32
3117 3207 2.352715 GGCAAACCACACTCCATTTAGC 60.353 50.000 0.00 0.00 35.26 3.09
3118 3208 2.095263 CGGCAAACCACACTCCATTTAG 60.095 50.000 0.00 0.00 34.57 1.85
3119 3209 1.883275 CGGCAAACCACACTCCATTTA 59.117 47.619 0.00 0.00 34.57 1.40
3120 3210 0.673437 CGGCAAACCACACTCCATTT 59.327 50.000 0.00 0.00 34.57 2.32
3121 3211 0.467290 ACGGCAAACCACACTCCATT 60.467 50.000 0.00 0.00 34.57 3.16
3122 3212 0.889186 GACGGCAAACCACACTCCAT 60.889 55.000 0.00 0.00 34.57 3.41
3123 3213 1.525077 GACGGCAAACCACACTCCA 60.525 57.895 0.00 0.00 34.57 3.86
3124 3214 2.258726 GGACGGCAAACCACACTCC 61.259 63.158 0.00 0.00 34.57 3.85
3125 3215 2.258726 GGGACGGCAAACCACACTC 61.259 63.158 0.00 0.00 34.57 3.51
3126 3216 2.203294 GGGACGGCAAACCACACT 60.203 61.111 0.00 0.00 34.57 3.55
3127 3217 1.668101 TTTGGGACGGCAAACCACAC 61.668 55.000 0.00 0.00 33.20 3.82
3128 3218 1.379977 TTTGGGACGGCAAACCACA 60.380 52.632 0.00 0.00 33.20 4.17
3129 3219 1.066752 GTTTGGGACGGCAAACCAC 59.933 57.895 0.00 0.00 35.83 4.16
3130 3220 1.379977 TGTTTGGGACGGCAAACCA 60.380 52.632 0.00 0.00 39.71 3.67
3131 3221 1.066752 GTGTTTGGGACGGCAAACC 59.933 57.895 0.00 0.00 39.71 3.27
3132 3222 1.066752 GGTGTTTGGGACGGCAAAC 59.933 57.895 0.00 0.00 40.55 2.93
3133 3223 0.970937 TTGGTGTTTGGGACGGCAAA 60.971 50.000 0.00 0.00 0.00 3.68
3134 3224 1.379977 TTGGTGTTTGGGACGGCAA 60.380 52.632 0.00 0.00 0.00 4.52
3135 3225 1.826054 CTTGGTGTTTGGGACGGCA 60.826 57.895 0.00 0.00 0.00 5.69
3136 3226 2.561037 CCTTGGTGTTTGGGACGGC 61.561 63.158 0.00 0.00 0.00 5.68
3137 3227 2.561037 GCCTTGGTGTTTGGGACGG 61.561 63.158 0.00 0.00 0.00 4.79
3138 3228 2.903547 CGCCTTGGTGTTTGGGACG 61.904 63.158 0.00 0.00 0.00 4.79
3139 3229 2.561037 CCGCCTTGGTGTTTGGGAC 61.561 63.158 0.00 0.00 0.00 4.46
3140 3230 2.203422 CCGCCTTGGTGTTTGGGA 60.203 61.111 0.00 0.00 0.00 4.37
3141 3231 3.302344 CCCGCCTTGGTGTTTGGG 61.302 66.667 0.00 0.00 35.15 4.12
3142 3232 2.131067 AACCCGCCTTGGTGTTTGG 61.131 57.895 0.00 0.00 39.05 3.28
3143 3233 1.067250 CAACCCGCCTTGGTGTTTG 59.933 57.895 0.00 0.00 39.05 2.93
3144 3234 1.076632 TCAACCCGCCTTGGTGTTT 60.077 52.632 0.00 0.00 39.05 2.83
3145 3235 1.528309 CTCAACCCGCCTTGGTGTT 60.528 57.895 0.00 0.00 39.05 3.32
3146 3236 2.113139 CTCAACCCGCCTTGGTGT 59.887 61.111 0.00 0.00 39.05 4.16
3147 3237 3.365265 GCTCAACCCGCCTTGGTG 61.365 66.667 0.00 0.00 39.05 4.17
3148 3238 2.713531 AATGCTCAACCCGCCTTGGT 62.714 55.000 0.00 0.00 41.55 3.67
3149 3239 1.937546 GAATGCTCAACCCGCCTTGG 61.938 60.000 0.00 0.00 37.55 3.61
3150 3240 1.243342 TGAATGCTCAACCCGCCTTG 61.243 55.000 0.00 0.00 0.00 3.61
3151 3241 0.323725 ATGAATGCTCAACCCGCCTT 60.324 50.000 0.00 0.00 34.49 4.35
3152 3242 1.033746 CATGAATGCTCAACCCGCCT 61.034 55.000 0.00 0.00 34.49 5.52
3153 3243 1.031571 TCATGAATGCTCAACCCGCC 61.032 55.000 0.00 0.00 34.49 6.13
3154 3244 0.099436 GTCATGAATGCTCAACCCGC 59.901 55.000 0.00 0.00 34.49 6.13
3155 3245 0.734889 GGTCATGAATGCTCAACCCG 59.265 55.000 0.00 0.00 34.49 5.28
3156 3246 2.134789 AGGTCATGAATGCTCAACCC 57.865 50.000 0.00 0.00 34.23 4.11
3157 3247 3.084039 TCAAGGTCATGAATGCTCAACC 58.916 45.455 0.00 0.00 34.01 3.77
3158 3248 3.128242 CCTCAAGGTCATGAATGCTCAAC 59.872 47.826 0.00 0.00 34.49 3.18
3159 3249 3.349927 CCTCAAGGTCATGAATGCTCAA 58.650 45.455 0.00 0.00 34.49 3.02
3160 3250 2.995283 CCTCAAGGTCATGAATGCTCA 58.005 47.619 0.00 0.00 35.56 4.26
3173 3263 3.435169 GGGCCCTATTCTTAACCTCAAGG 60.435 52.174 17.04 0.00 42.17 3.61
3174 3264 3.459969 AGGGCCCTATTCTTAACCTCAAG 59.540 47.826 27.42 0.00 0.00 3.02
3175 3265 3.458487 GAGGGCCCTATTCTTAACCTCAA 59.542 47.826 28.78 0.00 41.93 3.02
3176 3266 3.046374 GAGGGCCCTATTCTTAACCTCA 58.954 50.000 28.78 0.00 41.93 3.86
3177 3267 2.372504 GGAGGGCCCTATTCTTAACCTC 59.627 54.545 28.78 7.60 41.68 3.85
3178 3268 2.020942 AGGAGGGCCCTATTCTTAACCT 60.021 50.000 28.78 21.69 45.48 3.50
3179 3269 2.419686 AGGAGGGCCCTATTCTTAACC 58.580 52.381 28.78 19.51 45.48 2.85
3193 3283 0.609662 CAACCATTTGCCAAGGAGGG 59.390 55.000 0.00 0.00 38.09 4.30
3194 3284 1.341080 ACAACCATTTGCCAAGGAGG 58.659 50.000 0.00 0.00 36.00 4.30
3195 3285 3.473923 AAACAACCATTTGCCAAGGAG 57.526 42.857 0.00 0.00 36.00 3.69
3196 3286 5.359194 TTTAAACAACCATTTGCCAAGGA 57.641 34.783 0.00 0.00 36.00 3.36
3197 3287 6.631971 AATTTAAACAACCATTTGCCAAGG 57.368 33.333 0.00 0.00 36.00 3.61
3198 3288 8.281893 CAGTAATTTAAACAACCATTTGCCAAG 58.718 33.333 0.00 0.00 36.00 3.61
3199 3289 7.987458 TCAGTAATTTAAACAACCATTTGCCAA 59.013 29.630 0.00 0.00 36.00 4.52
3200 3290 7.439655 GTCAGTAATTTAAACAACCATTTGCCA 59.560 33.333 0.00 0.00 36.00 4.92
3201 3291 7.095397 GGTCAGTAATTTAAACAACCATTTGCC 60.095 37.037 0.00 0.00 36.00 4.52
3202 3292 7.095397 GGGTCAGTAATTTAAACAACCATTTGC 60.095 37.037 0.00 0.00 36.00 3.68
3203 3293 7.928706 TGGGTCAGTAATTTAAACAACCATTTG 59.071 33.333 0.00 0.00 38.83 2.32
3204 3294 8.024145 TGGGTCAGTAATTTAAACAACCATTT 57.976 30.769 0.00 0.00 30.56 2.32
3205 3295 7.604657 TGGGTCAGTAATTTAAACAACCATT 57.395 32.000 0.00 0.00 30.56 3.16
3206 3296 7.507616 TCTTGGGTCAGTAATTTAAACAACCAT 59.492 33.333 0.00 0.00 30.56 3.55
3207 3297 6.834451 TCTTGGGTCAGTAATTTAAACAACCA 59.166 34.615 0.00 0.00 30.56 3.67
3208 3298 7.279750 TCTTGGGTCAGTAATTTAAACAACC 57.720 36.000 0.00 0.00 0.00 3.77
3209 3299 7.812669 CCATCTTGGGTCAGTAATTTAAACAAC 59.187 37.037 0.00 0.00 32.67 3.32
3210 3300 7.507616 ACCATCTTGGGTCAGTAATTTAAACAA 59.492 33.333 0.00 0.00 43.37 2.83
3211 3301 7.007723 ACCATCTTGGGTCAGTAATTTAAACA 58.992 34.615 0.00 0.00 43.37 2.83
3212 3302 7.039993 ACACCATCTTGGGTCAGTAATTTAAAC 60.040 37.037 0.00 0.00 43.37 2.01
3213 3303 7.007723 ACACCATCTTGGGTCAGTAATTTAAA 58.992 34.615 0.00 0.00 43.37 1.52
3214 3304 6.548321 ACACCATCTTGGGTCAGTAATTTAA 58.452 36.000 0.00 0.00 43.37 1.52
3215 3305 6.134535 ACACCATCTTGGGTCAGTAATTTA 57.865 37.500 0.00 0.00 43.37 1.40
3216 3306 4.998051 ACACCATCTTGGGTCAGTAATTT 58.002 39.130 0.00 0.00 43.37 1.82
3217 3307 4.657814 ACACCATCTTGGGTCAGTAATT 57.342 40.909 0.00 0.00 43.37 1.40
3218 3308 5.397899 CCATACACCATCTTGGGTCAGTAAT 60.398 44.000 0.00 0.00 43.37 1.89
3219 3309 4.080582 CCATACACCATCTTGGGTCAGTAA 60.081 45.833 0.00 0.00 43.37 2.24
3220 3310 3.454447 CCATACACCATCTTGGGTCAGTA 59.546 47.826 0.00 0.00 43.37 2.74
3221 3311 2.239654 CCATACACCATCTTGGGTCAGT 59.760 50.000 0.00 0.00 43.37 3.41
3222 3312 2.923121 CCATACACCATCTTGGGTCAG 58.077 52.381 0.00 0.00 43.37 3.51
3223 3313 1.064758 GCCATACACCATCTTGGGTCA 60.065 52.381 0.00 0.00 43.37 4.02
3224 3314 1.064758 TGCCATACACCATCTTGGGTC 60.065 52.381 0.00 0.00 43.37 4.46
3225 3315 0.998928 TGCCATACACCATCTTGGGT 59.001 50.000 0.00 0.00 43.37 4.51
3226 3316 2.142356 TTGCCATACACCATCTTGGG 57.858 50.000 0.00 0.00 43.37 4.12
3227 3317 2.166254 GGTTTGCCATACACCATCTTGG 59.834 50.000 0.00 0.00 37.96 3.61
3228 3318 2.824936 TGGTTTGCCATACACCATCTTG 59.175 45.455 0.00 0.00 40.46 3.02
3229 3319 3.168035 TGGTTTGCCATACACCATCTT 57.832 42.857 0.00 0.00 40.46 2.40
3230 3320 2.897271 TGGTTTGCCATACACCATCT 57.103 45.000 0.00 0.00 40.46 2.90
3240 3330 3.631092 TCCTTCTCAGGATGGTTTGCCA 61.631 50.000 0.00 0.00 45.20 4.92
3241 3331 1.004745 TCCTTCTCAGGATGGTTTGCC 59.995 52.381 0.00 0.00 45.20 4.52
3242 3332 2.496899 TCCTTCTCAGGATGGTTTGC 57.503 50.000 0.00 0.00 45.20 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.