Multiple sequence alignment - TraesCS2D01G400600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G400600 chr2D 100.000 6031 0 0 1 6031 514944779 514950809 0.000000e+00 11138.0
1 TraesCS2D01G400600 chr2D 75.723 692 155 11 4346 5029 19643999 19643313 9.690000e-88 335.0
2 TraesCS2D01G400600 chr2D 81.250 128 24 0 2160 2287 651070908 651070781 2.970000e-18 104.0
3 TraesCS2D01G400600 chr2D 91.304 69 2 1 3898 3962 13474564 13474496 2.310000e-14 91.6
4 TraesCS2D01G400600 chr2B 93.429 3196 119 22 1 3165 606611403 606614538 0.000000e+00 4654.0
5 TraesCS2D01G400600 chr2B 94.558 2389 99 17 3164 5544 606614565 606616930 0.000000e+00 3663.0
6 TraesCS2D01G400600 chr2B 94.562 331 16 1 5642 5970 606616934 606617264 1.500000e-140 510.0
7 TraesCS2D01G400600 chr2B 79.651 172 33 2 1341 1511 786911191 786911021 8.210000e-24 122.0
8 TraesCS2D01G400600 chr2B 79.651 172 33 2 1341 1511 786954296 786954126 8.210000e-24 122.0
9 TraesCS2D01G400600 chr2B 81.752 137 23 2 1377 1511 776455475 776455339 4.940000e-21 113.0
10 TraesCS2D01G400600 chr2B 79.720 143 29 0 2145 2287 780015959 780015817 2.970000e-18 104.0
11 TraesCS2D01G400600 chr2B 92.157 51 4 0 3116 3166 788032267 788032217 8.380000e-09 73.1
12 TraesCS2D01G400600 chr2A 92.471 2125 133 17 3164 5277 658908573 658910681 0.000000e+00 3013.0
13 TraesCS2D01G400600 chr2A 94.764 1776 56 5 956 2712 658906296 658908053 0.000000e+00 2730.0
14 TraesCS2D01G400600 chr2A 93.677 775 40 9 5261 6031 658910693 658911462 0.000000e+00 1151.0
15 TraesCS2D01G400600 chr2A 91.781 438 25 6 2737 3165 658908111 658908546 3.110000e-167 599.0
16 TraesCS2D01G400600 chr2A 94.760 229 11 1 680 907 658906048 658906276 7.430000e-94 355.0
17 TraesCS2D01G400600 chr2A 75.762 689 154 11 4346 5026 20561283 20561966 9.690000e-88 335.0
18 TraesCS2D01G400600 chr2A 74.221 353 73 16 1164 1513 759171616 759171953 1.360000e-26 132.0
19 TraesCS2D01G400600 chr2A 76.623 154 33 1 2047 2200 759149528 759149678 1.390000e-11 82.4
20 TraesCS2D01G400600 chr2A 88.333 60 6 1 3106 3164 195110313 195110254 3.020000e-08 71.3
21 TraesCS2D01G400600 chr2A 100.000 29 0 0 3649 3677 759173681 759173709 3.000000e-03 54.7
22 TraesCS2D01G400600 chr7B 76.640 625 133 10 4344 4964 126175359 126174744 3.480000e-87 333.0
23 TraesCS2D01G400600 chr7B 92.958 71 5 0 5950 6020 261999995 261999925 2.970000e-18 104.0
24 TraesCS2D01G400600 chrUn 74.746 689 161 12 4346 5026 272323786 272324469 4.570000e-76 296.0
25 TraesCS2D01G400600 chrUn 74.638 690 160 14 4346 5026 16721838 16722521 2.130000e-74 291.0
26 TraesCS2D01G400600 chrUn 92.647 68 4 1 3 70 48284835 48284901 4.980000e-16 97.1
27 TraesCS2D01G400600 chrUn 92.453 53 2 2 5270 5322 163394430 163394480 2.330000e-09 75.0
28 TraesCS2D01G400600 chrUn 92.453 53 2 2 5270 5322 325472442 325472492 2.330000e-09 75.0
29 TraesCS2D01G400600 chrUn 92.453 53 2 2 5270 5322 384522692 384522742 2.330000e-09 75.0
30 TraesCS2D01G400600 chrUn 92.453 53 2 2 5270 5322 386040339 386040289 2.330000e-09 75.0
31 TraesCS2D01G400600 chrUn 89.474 57 6 0 3109 3165 86631072 86631016 8.380000e-09 73.1
32 TraesCS2D01G400600 chr6A 81.283 187 28 3 184 369 517658333 517658153 1.750000e-30 145.0
33 TraesCS2D01G400600 chr3A 94.286 70 4 0 1 70 445876635 445876704 2.300000e-19 108.0
34 TraesCS2D01G400600 chr3A 78.767 146 30 1 2144 2289 16233526 16233382 4.980000e-16 97.1
35 TraesCS2D01G400600 chr3A 78.767 146 30 1 2144 2289 17332556 17332700 4.980000e-16 97.1
36 TraesCS2D01G400600 chr3A 84.524 84 13 0 2615 2698 17378257 17378174 3.870000e-12 84.2
37 TraesCS2D01G400600 chr7D 90.000 80 7 1 5950 6029 274858010 274858088 1.070000e-17 102.0
38 TraesCS2D01G400600 chr1D 92.857 70 5 0 1 70 370203394 370203463 1.070000e-17 102.0
39 TraesCS2D01G400600 chr1D 85.526 76 7 2 3898 3970 309094030 309094104 6.480000e-10 76.8
40 TraesCS2D01G400600 chr3B 91.667 72 6 0 5950 6021 739228820 739228891 3.850000e-17 100.0
41 TraesCS2D01G400600 chr3B 88.312 77 9 0 5950 6026 529402461 529402385 6.440000e-15 93.5
42 TraesCS2D01G400600 chr3B 76.289 194 32 3 2518 2698 12841571 12841379 2.310000e-14 91.6
43 TraesCS2D01G400600 chr3B 91.176 68 3 1 3898 3962 662480205 662480138 8.330000e-14 89.8
44 TraesCS2D01G400600 chr3B 84.524 84 13 0 2612 2695 13247723 13247806 3.870000e-12 84.2
45 TraesCS2D01G400600 chr3B 83.784 74 7 4 5274 5343 527910751 527910823 1.400000e-06 65.8
46 TraesCS2D01G400600 chr1B 92.754 69 5 0 1 69 445589667 445589735 3.850000e-17 100.0
47 TraesCS2D01G400600 chr1B 91.429 70 6 0 1 70 564001638 564001707 4.980000e-16 97.1
48 TraesCS2D01G400600 chr1B 88.333 60 6 1 3106 3164 154145442 154145383 3.020000e-08 71.3
49 TraesCS2D01G400600 chr5D 90.411 73 7 0 5951 6023 533641695 533641623 4.980000e-16 97.1
50 TraesCS2D01G400600 chr5D 86.301 73 3 3 3890 3962 273117878 273117943 8.380000e-09 73.1
51 TraesCS2D01G400600 chr4D 91.429 70 6 0 1 70 270612604 270612535 4.980000e-16 97.1
52 TraesCS2D01G400600 chr3D 78.378 148 32 0 2144 2291 5375431 5375284 4.980000e-16 97.1
53 TraesCS2D01G400600 chr3D 73.913 253 58 5 2024 2275 5329646 5329891 1.790000e-15 95.3
54 TraesCS2D01G400600 chr3D 76.166 193 34 4 2515 2695 5330158 5330350 2.310000e-14 91.6
55 TraesCS2D01G400600 chr3D 76.289 194 32 3 2518 2698 41595219 41595027 2.310000e-14 91.6
56 TraesCS2D01G400600 chr3D 84.524 84 13 0 2615 2698 5374921 5374838 3.870000e-12 84.2
57 TraesCS2D01G400600 chr3D 94.444 54 2 1 5269 5322 64651558 64651610 1.390000e-11 82.4
58 TraesCS2D01G400600 chr3D 75.130 193 36 5 2518 2698 41425501 41425309 5.010000e-11 80.5
59 TraesCS2D01G400600 chr3D 89.286 56 6 0 3110 3165 400683937 400683992 3.020000e-08 71.3
60 TraesCS2D01G400600 chr5B 88.462 78 9 0 5950 6027 306447526 306447603 1.790000e-15 95.3
61 TraesCS2D01G400600 chr4A 87.342 79 10 0 5953 6031 362069993 362069915 2.310000e-14 91.6
62 TraesCS2D01G400600 chr4A 89.041 73 8 0 5951 6023 638216716 638216788 2.310000e-14 91.6
63 TraesCS2D01G400600 chr4A 89.552 67 4 3 3898 3962 597827000 597826935 1.390000e-11 82.4
64 TraesCS2D01G400600 chr5A 88.889 72 5 2 3893 3962 381757698 381757768 1.080000e-12 86.1
65 TraesCS2D01G400600 chr4B 84.706 85 8 3 3881 3962 654180522 654180604 5.010000e-11 80.5
66 TraesCS2D01G400600 chr7A 90.000 60 5 1 3106 3164 678173987 678174046 6.480000e-10 76.8
67 TraesCS2D01G400600 chr1A 85.294 68 6 3 3101 3165 12556164 12556230 3.900000e-07 67.6
68 TraesCS2D01G400600 chr6B 81.818 77 9 4 5270 5343 18858091 18858017 6.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G400600 chr2D 514944779 514950809 6030 False 11138.000000 11138 100.0000 1 6031 1 chr2D.!!$F1 6030
1 TraesCS2D01G400600 chr2D 19643313 19643999 686 True 335.000000 335 75.7230 4346 5029 1 chr2D.!!$R2 683
2 TraesCS2D01G400600 chr2B 606611403 606617264 5861 False 2942.333333 4654 94.1830 1 5970 3 chr2B.!!$F1 5969
3 TraesCS2D01G400600 chr2A 658906048 658911462 5414 False 1569.600000 3013 93.4906 680 6031 5 chr2A.!!$F3 5351
4 TraesCS2D01G400600 chr2A 20561283 20561966 683 False 335.000000 335 75.7620 4346 5026 1 chr2A.!!$F1 680
5 TraesCS2D01G400600 chr7B 126174744 126175359 615 True 333.000000 333 76.6400 4344 4964 1 chr7B.!!$R1 620
6 TraesCS2D01G400600 chrUn 272323786 272324469 683 False 296.000000 296 74.7460 4346 5026 1 chrUn.!!$F4 680
7 TraesCS2D01G400600 chrUn 16721838 16722521 683 False 291.000000 291 74.6380 4346 5026 1 chrUn.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 666 0.036164 TGTCGGATGTCCTGGTTTGG 59.964 55.0 0.00 0.00 0.0 3.28 F
2010 2028 0.391661 ATGAGCGCGAATCACCAAGT 60.392 50.0 12.10 0.00 0.0 3.16 F
2719 2748 0.179100 GCCATCTTCTGTCAGCGCTA 60.179 55.0 10.99 0.00 0.0 4.26 F
3476 3592 0.103937 GCTCCGAGTTATCTGCAGCT 59.896 55.0 9.47 0.82 0.0 4.24 F
3494 3610 0.540454 CTGCAGAGAATGAGGGAGCA 59.460 55.0 8.42 0.00 0.0 4.26 F
4775 4900 0.613260 TCACCCTGCGAACTATGCTT 59.387 50.0 0.00 0.00 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2496 1.063006 TACGCGCTGACGGTATCAC 59.937 57.895 5.73 0.00 40.57 3.06 R
3429 3545 0.108804 GACGGCGAAGACCAATCTGA 60.109 55.000 16.62 0.00 34.48 3.27 R
3539 3655 0.178767 CATCGATGACCTCCCTTGCA 59.821 55.000 21.02 0.00 0.00 4.08 R
4684 4809 0.179108 GCCGACCAGAGCTTCGTATT 60.179 55.000 4.94 0.00 33.23 1.89 R
4840 4965 0.824109 TGCCCTGAGTATGAACCTCG 59.176 55.000 0.00 0.00 0.00 4.63 R
5916 6080 5.795766 TGCGTCAATTAATTTCGATCAGAC 58.204 37.500 19.88 12.15 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.553248 TGACGGTATAGTTGCAAGCCT 59.447 47.619 0.00 0.00 0.00 4.58
71 72 2.027561 TGACGGTATAGTTGCAAGCCTT 60.028 45.455 0.00 0.00 0.00 4.35
91 92 2.299326 AGCAAATCTGACAGCCCTTT 57.701 45.000 0.00 0.00 0.00 3.11
96 97 2.393271 ATCTGACAGCCCTTTCTTCG 57.607 50.000 0.00 0.00 0.00 3.79
124 125 1.425428 GCCGAAGCAAATCCGACAG 59.575 57.895 0.00 0.00 39.53 3.51
140 141 0.405973 ACAGCCCTTTCTTCTTCCCC 59.594 55.000 0.00 0.00 0.00 4.81
160 161 2.410730 CCGTCGACTAAAGCAAATTCGT 59.589 45.455 14.70 0.00 0.00 3.85
166 167 2.488153 ACTAAAGCAAATTCGTCAGCCC 59.512 45.455 0.00 0.00 0.00 5.19
240 241 1.945354 GACCGATTCCGAGGCTCACA 61.945 60.000 15.95 0.00 38.22 3.58
241 242 1.227089 CCGATTCCGAGGCTCACAG 60.227 63.158 15.95 2.45 38.22 3.66
259 260 4.636435 ACGCTGGAACCAACCGGG 62.636 66.667 6.32 0.00 44.81 5.73
342 343 1.442520 CCGCAGACACAAATTGGCG 60.443 57.895 6.59 6.59 38.90 5.69
347 348 2.203625 ACACAAATTGGCGCCCCT 60.204 55.556 26.77 8.24 0.00 4.79
372 373 3.367703 GCTCAAACTTGGTGGAATGGATG 60.368 47.826 0.00 0.00 0.00 3.51
374 375 1.176527 AACTTGGTGGAATGGATGCG 58.823 50.000 0.00 0.00 0.00 4.73
375 376 0.038166 ACTTGGTGGAATGGATGCGT 59.962 50.000 0.00 0.00 0.00 5.24
376 377 0.734889 CTTGGTGGAATGGATGCGTC 59.265 55.000 0.00 0.00 0.00 5.19
377 378 1.024046 TTGGTGGAATGGATGCGTCG 61.024 55.000 0.00 0.00 0.00 5.12
378 379 2.709475 GTGGAATGGATGCGTCGC 59.291 61.111 11.10 11.10 0.00 5.19
379 380 2.106074 GTGGAATGGATGCGTCGCA 61.106 57.895 24.05 24.05 44.86 5.10
380 381 1.815003 TGGAATGGATGCGTCGCAG 60.815 57.895 25.78 0.00 43.65 5.18
381 382 2.537560 GGAATGGATGCGTCGCAGG 61.538 63.158 25.78 0.00 43.65 4.85
382 383 2.514592 AATGGATGCGTCGCAGGG 60.515 61.111 25.78 0.00 43.65 4.45
394 395 3.866582 GCAGGGCGGTGGAGCTAT 61.867 66.667 0.00 0.00 37.29 2.97
395 396 2.423446 CAGGGCGGTGGAGCTATC 59.577 66.667 0.00 0.00 37.29 2.08
396 397 3.227276 AGGGCGGTGGAGCTATCG 61.227 66.667 0.00 0.00 37.29 2.92
397 398 4.301027 GGGCGGTGGAGCTATCGG 62.301 72.222 0.00 0.00 37.29 4.18
398 399 3.224324 GGCGGTGGAGCTATCGGA 61.224 66.667 0.00 0.00 37.29 4.55
399 400 2.574955 GGCGGTGGAGCTATCGGAT 61.575 63.158 0.00 0.00 37.29 4.18
407 408 4.357947 GCTATCGGATGGCGCGGA 62.358 66.667 10.65 0.00 0.00 5.54
511 512 2.754375 GGAAAGGGGAGCCGACAA 59.246 61.111 0.00 0.00 0.00 3.18
552 553 4.357918 AGATATGAAGGAAATGGACCCG 57.642 45.455 0.00 0.00 0.00 5.28
559 560 1.073923 AGGAAATGGACCCGCATATCC 59.926 52.381 0.00 0.00 35.37 2.59
564 565 0.473694 TGGACCCGCATATCCAGGAT 60.474 55.000 7.27 7.27 40.17 3.24
594 598 0.176219 ACGGTCGAATTTGCGGGATA 59.824 50.000 0.00 0.00 0.00 2.59
627 631 2.976494 AAAACAGCCTCCACCCCGTG 62.976 60.000 0.00 0.00 0.00 4.94
662 666 0.036164 TGTCGGATGTCCTGGTTTGG 59.964 55.000 0.00 0.00 0.00 3.28
667 671 1.566231 GGATGTCCTGGTTTGGGAGAT 59.434 52.381 0.00 0.00 39.17 2.75
668 672 2.422093 GGATGTCCTGGTTTGGGAGATC 60.422 54.545 10.24 10.24 46.49 2.75
669 673 2.044793 TGTCCTGGTTTGGGAGATCT 57.955 50.000 0.00 0.00 33.04 2.75
670 674 1.630369 TGTCCTGGTTTGGGAGATCTG 59.370 52.381 0.00 0.00 33.04 2.90
671 675 0.620556 TCCTGGTTTGGGAGATCTGC 59.379 55.000 5.52 5.52 0.00 4.26
672 676 0.622665 CCTGGTTTGGGAGATCTGCT 59.377 55.000 14.40 0.00 0.00 4.24
673 677 1.005215 CCTGGTTTGGGAGATCTGCTT 59.995 52.381 14.40 0.00 0.00 3.91
674 678 2.089980 CTGGTTTGGGAGATCTGCTTG 58.910 52.381 14.40 0.00 0.00 4.01
675 679 1.704628 TGGTTTGGGAGATCTGCTTGA 59.295 47.619 14.40 0.00 0.00 3.02
676 680 2.290514 TGGTTTGGGAGATCTGCTTGAG 60.291 50.000 14.40 0.00 0.00 3.02
677 681 2.026822 GGTTTGGGAGATCTGCTTGAGA 60.027 50.000 14.40 0.00 34.25 3.27
678 682 3.371380 GGTTTGGGAGATCTGCTTGAGAT 60.371 47.826 14.40 0.00 44.78 2.75
679 683 3.555527 TTGGGAGATCTGCTTGAGATG 57.444 47.619 14.40 0.00 41.91 2.90
680 684 1.767088 TGGGAGATCTGCTTGAGATGG 59.233 52.381 14.40 0.00 41.91 3.51
734 738 0.532196 GTCCTTGTGTATAGGCCGCC 60.532 60.000 0.00 0.00 32.59 6.13
843 847 8.302515 AGTATACGAAGAGTTTAATTCCCTGA 57.697 34.615 0.00 0.00 0.00 3.86
878 883 1.670087 CCCGATATAAGCAGCGAGGTG 60.670 57.143 0.00 0.00 0.00 4.00
909 914 6.349033 GGGTCGAGTTGTATTGTGCTTTTTAT 60.349 38.462 0.00 0.00 0.00 1.40
927 932 1.549203 ATGTGTTGCCTTGACCATCC 58.451 50.000 0.00 0.00 0.00 3.51
1003 1017 5.744171 TGGAATTCGATCCAAAAGAGATGA 58.256 37.500 5.25 0.00 46.36 2.92
1036 1054 4.158764 CAGAACCTTCGAAGATCTACCTGT 59.841 45.833 26.61 9.97 35.04 4.00
1057 1075 2.528041 AGACCTCGTGAGTTTTGGAC 57.472 50.000 0.00 0.00 0.00 4.02
1073 1091 2.746277 ACATGAAAGCGACGGGGC 60.746 61.111 0.00 0.00 0.00 5.80
1575 1593 1.980232 CCCTTTTTACCCGGGGCAC 60.980 63.158 27.92 0.00 34.22 5.01
1934 1952 0.533755 GGCAATCACCAGGAGGATCG 60.534 60.000 0.00 0.00 38.69 3.69
2010 2028 0.391661 ATGAGCGCGAATCACCAAGT 60.392 50.000 12.10 0.00 0.00 3.16
2022 2040 3.648339 TCACCAAGTACAACTACGGTC 57.352 47.619 0.00 0.00 33.36 4.79
2139 2158 0.393820 GGTACGTGGAGTTGGACCAA 59.606 55.000 1.69 1.69 39.22 3.67
2154 2173 2.401766 CCAACTGCCCATGAGCGTC 61.402 63.158 0.00 0.00 34.65 5.19
2165 2184 4.129737 GAGCGTCGCTAGCACCCA 62.130 66.667 21.77 0.00 39.88 4.51
2233 2252 0.395862 ACCATCGACATCCCTCGTCT 60.396 55.000 0.00 0.00 35.10 4.18
2281 2300 0.469892 CCTCCCAGGGCAGTTTGTTT 60.470 55.000 0.00 0.00 0.00 2.83
2695 2724 0.599060 TGATGGTAGCACGTCAACGA 59.401 50.000 9.88 0.00 43.02 3.85
2702 2731 1.006832 AGCACGTCAACGATAATGCC 58.993 50.000 9.88 0.00 43.02 4.40
2712 2741 4.811024 TCAACGATAATGCCATCTTCTGTC 59.189 41.667 0.00 0.00 0.00 3.51
2714 2743 4.375272 ACGATAATGCCATCTTCTGTCAG 58.625 43.478 0.00 0.00 0.00 3.51
2715 2744 3.186001 CGATAATGCCATCTTCTGTCAGC 59.814 47.826 0.00 0.00 0.00 4.26
2716 2745 1.376543 AATGCCATCTTCTGTCAGCG 58.623 50.000 0.00 0.00 0.00 5.18
2719 2748 0.179100 GCCATCTTCTGTCAGCGCTA 60.179 55.000 10.99 0.00 0.00 4.26
2720 2749 1.565305 CCATCTTCTGTCAGCGCTAC 58.435 55.000 10.99 9.86 0.00 3.58
2721 2750 1.135915 CCATCTTCTGTCAGCGCTACT 59.864 52.381 10.99 0.00 0.00 2.57
2722 2751 2.417924 CCATCTTCTGTCAGCGCTACTT 60.418 50.000 10.99 0.00 0.00 2.24
2723 2752 2.354109 TCTTCTGTCAGCGCTACTTG 57.646 50.000 10.99 0.00 0.00 3.16
2724 2753 1.613925 TCTTCTGTCAGCGCTACTTGT 59.386 47.619 10.99 0.00 0.00 3.16
2725 2754 2.035961 TCTTCTGTCAGCGCTACTTGTT 59.964 45.455 10.99 0.00 0.00 2.83
2726 2755 3.254903 TCTTCTGTCAGCGCTACTTGTTA 59.745 43.478 10.99 0.00 0.00 2.41
2727 2756 2.942710 TCTGTCAGCGCTACTTGTTAC 58.057 47.619 10.99 0.44 0.00 2.50
2728 2757 2.557056 TCTGTCAGCGCTACTTGTTACT 59.443 45.455 10.99 0.00 0.00 2.24
2729 2758 3.754850 TCTGTCAGCGCTACTTGTTACTA 59.245 43.478 10.99 0.00 0.00 1.82
2730 2759 3.829948 TGTCAGCGCTACTTGTTACTAC 58.170 45.455 10.99 0.00 0.00 2.73
2823 2897 2.115910 CCTTTCAGGTGCTGCCCA 59.884 61.111 9.36 0.00 38.26 5.36
2824 2898 1.975407 CCTTTCAGGTGCTGCCCAG 60.975 63.158 9.36 2.35 38.26 4.45
2924 2998 4.278513 CCACCCCAAGAACCGGCA 62.279 66.667 0.00 0.00 0.00 5.69
2948 3026 2.289002 CGACTACACGGTATCTACCCAC 59.711 54.545 0.82 0.00 43.51 4.61
3141 3229 8.401955 ACCCCCTCTACAAAGAAATATAAGAA 57.598 34.615 0.00 0.00 0.00 2.52
3263 3379 5.776358 TCCATTAATAAAGTGATGGGCCTT 58.224 37.500 4.53 0.00 39.57 4.35
3326 3442 4.593864 GACGAGGATCCTGCGGGC 62.594 72.222 22.02 14.26 0.00 6.13
3429 3545 4.024670 AGCTCGAGGTAAAAGGTGTCTAT 58.975 43.478 16.99 0.00 0.00 1.98
3431 3547 4.142227 GCTCGAGGTAAAAGGTGTCTATCA 60.142 45.833 15.58 0.00 0.00 2.15
3476 3592 0.103937 GCTCCGAGTTATCTGCAGCT 59.896 55.000 9.47 0.82 0.00 4.24
3494 3610 0.540454 CTGCAGAGAATGAGGGAGCA 59.460 55.000 8.42 0.00 0.00 4.26
3567 3683 1.004277 GGTCATCGATGCGGACGATC 61.004 60.000 20.81 0.00 46.40 3.69
3802 3918 5.458041 TCTGATTTCCTTGGCAAAAGAAG 57.542 39.130 0.00 0.00 0.00 2.85
3823 3939 1.001633 CCACACCCACTTAGCTACGTT 59.998 52.381 0.00 0.00 0.00 3.99
3843 3959 4.607557 CGTTGAGAAAACCACGTGTCATAC 60.608 45.833 15.65 9.81 0.00 2.39
3883 3999 8.630054 AACCTGTTTATGAACAAATAGCTACA 57.370 30.769 4.47 0.00 44.65 2.74
3925 4041 7.672122 ACTCCCTCCGTAAAGAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3929 4045 5.333111 CCTCCGTAAAGAAATATAAGTGCGC 60.333 44.000 0.00 0.00 0.00 6.09
3930 4046 5.353938 TCCGTAAAGAAATATAAGTGCGCT 58.646 37.500 9.73 0.00 0.00 5.92
3931 4047 5.813672 TCCGTAAAGAAATATAAGTGCGCTT 59.186 36.000 17.97 17.97 38.66 4.68
3932 4048 6.979817 TCCGTAAAGAAATATAAGTGCGCTTA 59.020 34.615 21.28 21.28 40.98 3.09
3971 4089 7.038587 TGTTTACAGAGGGAGTAGCTGATTTTA 60.039 37.037 0.00 0.00 33.94 1.52
3972 4090 7.490657 TTACAGAGGGAGTAGCTGATTTTAA 57.509 36.000 0.00 0.00 33.94 1.52
4020 4139 5.046529 TCATGACAACAATTTTGAAACCGG 58.953 37.500 0.00 0.00 0.00 5.28
4034 4153 4.784177 TGAAACCGGGGGAGTATTATTTC 58.216 43.478 6.32 3.05 0.00 2.17
4040 4159 3.496160 CGGGGGAGTATTATTTCTGGTGG 60.496 52.174 0.00 0.00 0.00 4.61
4051 4170 3.467374 TTTCTGGTGGTTTTGAATGCC 57.533 42.857 0.00 0.00 0.00 4.40
4052 4171 1.337118 TCTGGTGGTTTTGAATGCCC 58.663 50.000 0.00 0.00 0.00 5.36
4123 4242 7.090808 CCACAAGTTAAGATTAGCCTTTTTCC 58.909 38.462 0.00 0.00 0.00 3.13
4124 4243 7.039714 CCACAAGTTAAGATTAGCCTTTTTCCT 60.040 37.037 0.00 0.00 0.00 3.36
4125 4244 7.809806 CACAAGTTAAGATTAGCCTTTTTCCTG 59.190 37.037 0.00 0.00 0.00 3.86
4126 4245 6.516739 AGTTAAGATTAGCCTTTTTCCTGC 57.483 37.500 0.00 0.00 0.00 4.85
4128 4247 6.493458 AGTTAAGATTAGCCTTTTTCCTGCAA 59.507 34.615 0.00 0.00 0.00 4.08
4130 4249 5.334724 AGATTAGCCTTTTTCCTGCAATG 57.665 39.130 0.00 0.00 0.00 2.82
4134 4253 4.420522 AGCCTTTTTCCTGCAATGAAAA 57.579 36.364 15.96 15.96 38.41 2.29
4332 4452 2.614057 GCCCTATGAACCGAATTGACTG 59.386 50.000 0.00 0.00 0.00 3.51
4336 4456 4.330074 CCTATGAACCGAATTGACTGTGTC 59.670 45.833 0.00 0.00 0.00 3.67
4342 4467 5.862924 ACCGAATTGACTGTGTCTAATTG 57.137 39.130 10.43 0.00 33.15 2.32
4455 4580 2.289133 GGGCTCTTCTTCTTCGACTTGT 60.289 50.000 0.00 0.00 0.00 3.16
4511 4636 2.679837 GGTGTACTATCACTCGTTCGGA 59.320 50.000 0.00 0.00 38.28 4.55
4574 4699 2.421619 CTCAGCCTTCTCAACACCTTC 58.578 52.381 0.00 0.00 0.00 3.46
4684 4809 1.762957 GCCCTACTACAATGAGGCTGA 59.237 52.381 0.00 0.00 37.42 4.26
4685 4810 2.170607 GCCCTACTACAATGAGGCTGAA 59.829 50.000 0.00 0.00 37.42 3.02
4775 4900 0.613260 TCACCCTGCGAACTATGCTT 59.387 50.000 0.00 0.00 0.00 3.91
4853 4978 1.067582 CCGGGCGAGGTTCATACTC 59.932 63.158 0.00 0.00 0.00 2.59
5164 5292 2.063979 TAGGGGAGACATGGTGGCG 61.064 63.158 0.00 0.00 0.00 5.69
5308 5467 8.842358 TCCGTCCCATAATATAAGATGTTTTC 57.158 34.615 0.00 0.00 0.00 2.29
5497 5658 7.503549 ACTAGCTCATGTATTGACAATGATCA 58.496 34.615 11.05 0.00 39.59 2.92
5521 5682 4.975502 TGTTTTCTTGATCACGAACATTGC 59.024 37.500 13.73 4.43 0.00 3.56
5600 5761 5.163416 GCCCCAACTTATGAATTACTGCAAT 60.163 40.000 0.00 0.00 0.00 3.56
5613 5774 7.497579 TGAATTACTGCAATATCACAACGGTAT 59.502 33.333 0.00 0.00 0.00 2.73
5675 5836 5.109662 AGACCATGAGAATATCGTACACG 57.890 43.478 0.00 0.00 41.45 4.49
5681 5842 3.630769 TGAGAATATCGTACACGGAGCTT 59.369 43.478 1.39 0.00 40.29 3.74
5718 5880 9.329913 GATGTGTGTAGTGTTGATATTTGTTTC 57.670 33.333 0.00 0.00 0.00 2.78
5783 5945 9.679661 TTTTGCTACTATGTCCAAAATCATCTA 57.320 29.630 0.00 0.00 33.66 1.98
6006 6170 5.092781 ACTAAAGCCGCGTCAATTAATTTG 58.907 37.500 4.92 0.00 36.61 2.32
6010 6174 3.130340 AGCCGCGTCAATTAATTTGGATT 59.870 39.130 4.92 0.00 35.92 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.439857 AAGGGCTGTCAGATTTGCTAA 57.560 42.857 3.32 0.00 0.00 3.09
71 72 3.009473 AGAAAGGGCTGTCAGATTTGCTA 59.991 43.478 3.32 0.00 0.00 3.49
124 125 0.677098 GACGGGGAAGAAGAAAGGGC 60.677 60.000 0.00 0.00 0.00 5.19
140 141 3.120616 TGACGAATTTGCTTTAGTCGACG 59.879 43.478 10.46 0.00 35.71 5.12
160 161 0.698818 GGGGAAGAAGAAAGGGCTGA 59.301 55.000 0.00 0.00 0.00 4.26
166 167 1.745489 CCGGCGGGGAAGAAGAAAG 60.745 63.158 20.56 0.00 38.47 2.62
224 225 0.526524 GTCTGTGAGCCTCGGAATCG 60.527 60.000 0.00 0.00 37.82 3.34
225 226 0.526524 CGTCTGTGAGCCTCGGAATC 60.527 60.000 0.00 0.00 0.00 2.52
240 241 2.030562 CGGTTGGTTCCAGCGTCT 59.969 61.111 0.02 0.00 0.00 4.18
241 242 3.047877 CCGGTTGGTTCCAGCGTC 61.048 66.667 0.00 0.00 33.25 5.19
329 330 2.261361 GGGGCGCCAATTTGTGTC 59.739 61.111 30.85 6.91 0.00 3.67
342 343 2.985847 AAGTTTGAGCGCAGGGGC 60.986 61.111 11.47 0.00 0.00 5.80
347 348 0.749818 TTCCACCAAGTTTGAGCGCA 60.750 50.000 11.47 0.00 0.00 6.09
350 351 2.238521 TCCATTCCACCAAGTTTGAGC 58.761 47.619 0.00 0.00 0.00 4.26
377 378 3.816367 GATAGCTCCACCGCCCTGC 62.816 68.421 0.00 0.00 0.00 4.85
378 379 2.423446 GATAGCTCCACCGCCCTG 59.577 66.667 0.00 0.00 0.00 4.45
379 380 3.227276 CGATAGCTCCACCGCCCT 61.227 66.667 0.00 0.00 0.00 5.19
380 381 4.301027 CCGATAGCTCCACCGCCC 62.301 72.222 0.00 0.00 0.00 6.13
381 382 2.574955 ATCCGATAGCTCCACCGCC 61.575 63.158 0.00 0.00 0.00 6.13
382 383 1.373497 CATCCGATAGCTCCACCGC 60.373 63.158 0.00 0.00 0.00 5.68
383 384 1.290324 CCATCCGATAGCTCCACCG 59.710 63.158 0.00 0.00 0.00 4.94
384 385 1.004440 GCCATCCGATAGCTCCACC 60.004 63.158 0.00 0.00 0.00 4.61
385 386 1.373497 CGCCATCCGATAGCTCCAC 60.373 63.158 0.00 0.00 40.02 4.02
386 387 3.051210 CGCCATCCGATAGCTCCA 58.949 61.111 0.00 0.00 40.02 3.86
387 388 2.433318 GCGCCATCCGATAGCTCC 60.433 66.667 0.00 0.00 40.02 4.70
388 389 2.807045 CGCGCCATCCGATAGCTC 60.807 66.667 0.00 0.00 40.02 4.09
389 390 4.363990 CCGCGCCATCCGATAGCT 62.364 66.667 0.00 0.00 40.02 3.32
390 391 4.357947 TCCGCGCCATCCGATAGC 62.358 66.667 0.00 0.00 40.02 2.97
391 392 2.126307 CTCCGCGCCATCCGATAG 60.126 66.667 0.00 0.00 40.02 2.08
392 393 4.357947 GCTCCGCGCCATCCGATA 62.358 66.667 0.00 0.00 40.02 2.92
407 408 4.749310 CCGCCTGTTCTCGCTGCT 62.749 66.667 0.00 0.00 0.00 4.24
419 420 4.033776 CACCACACATCCCCGCCT 62.034 66.667 0.00 0.00 0.00 5.52
447 448 4.452733 CGTTCCCGCCTCCACTCC 62.453 72.222 0.00 0.00 0.00 3.85
465 466 0.868406 AACTTCTTTCCGCTCGCTTG 59.132 50.000 0.00 0.00 0.00 4.01
470 471 0.164002 GCACGAACTTCTTTCCGCTC 59.836 55.000 0.00 0.00 0.00 5.03
541 542 2.154462 CTGGATATGCGGGTCCATTTC 58.846 52.381 4.49 0.00 43.20 2.17
572 573 1.570347 CCCGCAAATTCGACCGTGAA 61.570 55.000 0.00 0.00 0.00 3.18
576 577 1.508632 ATATCCCGCAAATTCGACCG 58.491 50.000 0.00 0.00 0.00 4.79
580 581 3.063452 CCCGAATATATCCCGCAAATTCG 59.937 47.826 8.38 8.38 45.14 3.34
594 598 0.681564 TGTTTTGCCGGCCCGAATAT 60.682 50.000 26.77 0.00 0.00 1.28
627 631 3.094339 CGACAAAATAACCGTCGGTTC 57.906 47.619 32.02 15.63 43.05 3.62
635 639 3.377172 CCAGGACATCCGACAAAATAACC 59.623 47.826 0.00 0.00 42.08 2.85
637 641 4.295141 ACCAGGACATCCGACAAAATAA 57.705 40.909 0.00 0.00 42.08 1.40
662 666 3.557228 AACCATCTCAAGCAGATCTCC 57.443 47.619 0.00 0.00 40.20 3.71
667 671 2.507484 CCACAAACCATCTCAAGCAGA 58.493 47.619 0.00 0.00 34.78 4.26
668 672 1.068055 GCCACAAACCATCTCAAGCAG 60.068 52.381 0.00 0.00 0.00 4.24
669 673 0.961019 GCCACAAACCATCTCAAGCA 59.039 50.000 0.00 0.00 0.00 3.91
670 674 0.109597 CGCCACAAACCATCTCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
671 675 0.109597 GCGCCACAAACCATCTCAAG 60.110 55.000 0.00 0.00 0.00 3.02
672 676 1.523154 GGCGCCACAAACCATCTCAA 61.523 55.000 24.80 0.00 0.00 3.02
673 677 1.971167 GGCGCCACAAACCATCTCA 60.971 57.895 24.80 0.00 0.00 3.27
674 678 1.523154 TTGGCGCCACAAACCATCTC 61.523 55.000 32.95 0.00 32.39 2.75
675 679 1.530419 TTGGCGCCACAAACCATCT 60.530 52.632 32.95 0.00 32.39 2.90
676 680 1.372872 GTTGGCGCCACAAACCATC 60.373 57.895 32.95 8.37 32.39 3.51
677 681 2.733945 GTTGGCGCCACAAACCAT 59.266 55.556 32.95 0.00 32.39 3.55
678 682 3.532155 GGTTGGCGCCACAAACCA 61.532 61.111 33.97 17.14 31.92 3.67
679 683 3.532155 TGGTTGGCGCCACAAACC 61.532 61.111 32.89 32.89 37.25 3.27
734 738 2.509336 GCCGGTCCTGACACATCG 60.509 66.667 1.90 0.00 0.00 3.84
909 914 0.888736 CGGATGGTCAAGGCAACACA 60.889 55.000 0.00 0.00 41.41 3.72
927 932 1.062845 AAACACGAAAACCGGTGCG 59.937 52.632 8.52 15.70 43.93 5.34
937 942 2.325166 GGTTCGCGCAAACACGAA 59.675 55.556 14.05 0.94 45.27 3.85
938 943 3.990806 CGGTTCGCGCAAACACGA 61.991 61.111 14.05 0.00 36.32 4.35
939 944 4.287967 ACGGTTCGCGCAAACACG 62.288 61.111 14.05 15.70 0.00 4.49
1003 1017 0.878961 GAAGGTTCTGCCACGACGTT 60.879 55.000 0.00 0.00 40.61 3.99
1036 1054 3.385433 TGTCCAAAACTCACGAGGTCTAA 59.615 43.478 0.00 0.00 0.00 2.10
1057 1075 2.436646 AGCCCCGTCGCTTTCATG 60.437 61.111 0.00 0.00 34.73 3.07
1641 1659 2.716017 GGTGCCTGCTCTACGCTCT 61.716 63.158 0.00 0.00 40.11 4.09
1725 1743 2.890808 ACTCTTGAACGAGCTGTTGA 57.109 45.000 0.00 0.00 42.09 3.18
1934 1952 1.080093 TCTGAACATGCGACGGGTC 60.080 57.895 0.00 0.00 0.00 4.46
2022 2040 2.913578 TGCTGCTGCTTTGTGGGG 60.914 61.111 17.00 0.00 40.48 4.96
2088 2107 4.147449 CATCGCGCCCTCCTGTGA 62.147 66.667 0.00 0.00 0.00 3.58
2154 2173 2.742372 GTGGTGTGGGTGCTAGCG 60.742 66.667 10.77 0.00 0.00 4.26
2165 2184 3.067480 AACACGTCGACGGTGGTGT 62.067 57.895 37.89 29.38 44.85 4.16
2281 2300 1.957186 CGGGAAAGGCGTTGTCGAA 60.957 57.895 0.00 0.00 39.71 3.71
2306 2325 3.136123 CAGCATCAACGGGGGCAG 61.136 66.667 0.00 0.00 0.00 4.85
2313 2332 3.853330 CCGACGGCAGCATCAACG 61.853 66.667 0.00 0.00 0.00 4.10
2315 2334 2.741985 CACCGACGGCAGCATCAA 60.742 61.111 15.39 0.00 0.00 2.57
2471 2496 1.063006 TACGCGCTGACGGTATCAC 59.937 57.895 5.73 0.00 40.57 3.06
2602 2627 4.082571 CCATGAAAGATCGGCTTTGTTCTT 60.083 41.667 8.56 0.00 46.52 2.52
2607 2632 2.094675 ACCCATGAAAGATCGGCTTTG 58.905 47.619 8.56 0.00 46.52 2.77
2702 2731 2.575694 AGTAGCGCTGACAGAAGATG 57.424 50.000 22.90 0.00 0.00 2.90
2712 2741 5.232610 AGTAGTAGTAACAAGTAGCGCTG 57.767 43.478 22.90 6.48 0.00 5.18
2714 2743 6.356757 ACTAGTAGTAGTAACAAGTAGCGC 57.643 41.667 8.55 0.00 37.76 5.92
2715 2744 7.846485 GGTACTAGTAGTAGTAACAAGTAGCG 58.154 42.308 22.68 0.00 45.51 4.26
2723 2752 6.052360 AGCGGAAGGTACTAGTAGTAGTAAC 58.948 44.000 20.83 20.83 46.26 2.50
2724 2753 6.240549 AGCGGAAGGTACTAGTAGTAGTAA 57.759 41.667 17.25 1.87 42.29 2.24
2725 2754 5.878406 AGCGGAAGGTACTAGTAGTAGTA 57.122 43.478 12.58 12.58 38.49 1.82
2726 2755 4.769345 AGCGGAAGGTACTAGTAGTAGT 57.231 45.455 14.57 14.57 38.49 2.73
2823 2897 3.066760 TCGTTGATGACACATATCTCGCT 59.933 43.478 0.00 0.00 0.00 4.93
2824 2898 3.372060 TCGTTGATGACACATATCTCGC 58.628 45.455 0.00 0.00 0.00 5.03
2831 2905 4.380531 AGTTCTGTTCGTTGATGACACAT 58.619 39.130 0.00 0.00 0.00 3.21
2948 3026 6.741992 TGCTAACAGTGAACAGATTAATGG 57.258 37.500 0.00 0.00 0.00 3.16
2992 3070 5.935945 TGTTTGGTGGTTGAGAGAATAGAA 58.064 37.500 0.00 0.00 0.00 2.10
3051 3137 3.541632 TGAAAACGAGAGCAAGGAGTTT 58.458 40.909 0.00 0.00 36.70 2.66
3118 3206 7.985752 ACGTTCTTATATTTCTTTGTAGAGGGG 59.014 37.037 0.00 0.00 0.00 4.79
3368 3484 1.702299 GATCACAAACGAGACGGCG 59.298 57.895 4.80 4.80 37.29 6.46
3429 3545 0.108804 GACGGCGAAGACCAATCTGA 60.109 55.000 16.62 0.00 34.48 3.27
3431 3547 0.537188 ATGACGGCGAAGACCAATCT 59.463 50.000 16.62 0.00 36.42 2.40
3476 3592 0.251354 GTGCTCCCTCATTCTCTGCA 59.749 55.000 0.00 0.00 0.00 4.41
3503 3619 3.804281 TGGTCACCACCACCAGGTACT 62.804 57.143 0.00 0.00 46.63 2.73
3535 3651 2.527951 GATGACCTCCCTTGCAGCGT 62.528 60.000 0.00 0.00 0.00 5.07
3539 3655 0.178767 CATCGATGACCTCCCTTGCA 59.821 55.000 21.02 0.00 0.00 4.08
3567 3683 2.673523 CTTCCCCTCACTGGCAGG 59.326 66.667 20.34 8.05 0.00 4.85
3802 3918 0.739813 CGTAGCTAAGTGGGTGTGGC 60.740 60.000 0.00 0.00 0.00 5.01
3804 3920 2.066262 CAACGTAGCTAAGTGGGTGTG 58.934 52.381 13.24 3.76 0.00 3.82
3823 3939 3.054166 CGTATGACACGTGGTTTTCTCA 58.946 45.455 21.57 13.43 45.82 3.27
3843 3959 0.536460 AGGTTTGGGTTGCTACCACG 60.536 55.000 19.19 0.00 46.96 4.94
3904 4020 5.176958 CGCACTTATATTTCTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
3925 4041 7.786178 AAACAAATATAGTGATCTAAGCGCA 57.214 32.000 11.47 0.00 0.00 6.09
3932 4048 9.213777 TCCCTCTGTAAACAAATATAGTGATCT 57.786 33.333 0.00 0.00 0.00 2.75
4018 4137 3.496160 CCACCAGAAATAATACTCCCCCG 60.496 52.174 0.00 0.00 0.00 5.73
4020 4139 4.790718 ACCACCAGAAATAATACTCCCC 57.209 45.455 0.00 0.00 0.00 4.81
4034 4153 1.273327 GAGGGCATTCAAAACCACCAG 59.727 52.381 0.00 0.00 0.00 4.00
4108 4227 5.018809 TCATTGCAGGAAAAAGGCTAATCT 58.981 37.500 0.00 0.00 0.00 2.40
4194 4313 2.032681 ACCTCTTTCCACCGCAGC 59.967 61.111 0.00 0.00 0.00 5.25
4199 4318 0.476771 TTGACCCACCTCTTTCCACC 59.523 55.000 0.00 0.00 0.00 4.61
4332 4452 6.051717 AGATGGTATCTGCACAATTAGACAC 58.948 40.000 0.00 0.00 38.44 3.67
4336 4456 6.144563 CACGTAGATGGTATCTGCACAATTAG 59.855 42.308 7.50 0.00 41.39 1.73
4342 4467 2.128035 GCACGTAGATGGTATCTGCAC 58.872 52.381 7.50 0.00 41.39 4.57
4684 4809 0.179108 GCCGACCAGAGCTTCGTATT 60.179 55.000 4.94 0.00 33.23 1.89
4685 4810 1.320344 TGCCGACCAGAGCTTCGTAT 61.320 55.000 4.94 0.00 33.23 3.06
4775 4900 2.049767 TGGTCGGCGCAGTAGATGA 61.050 57.895 10.83 0.00 0.00 2.92
4840 4965 0.824109 TGCCCTGAGTATGAACCTCG 59.176 55.000 0.00 0.00 0.00 4.63
5284 5443 8.848474 AGAAAACATCTTATATTATGGGACGG 57.152 34.615 0.00 0.00 33.39 4.79
5308 5467 4.039730 CCTCCATCCCACACTAGTATCAAG 59.960 50.000 0.00 0.00 0.00 3.02
5379 5538 7.191551 ACTCATATTCAAGAATCAATGCAACG 58.808 34.615 0.00 0.00 32.50 4.10
5380 5539 8.922058 AACTCATATTCAAGAATCAATGCAAC 57.078 30.769 0.00 0.00 32.50 4.17
5497 5658 5.630680 GCAATGTTCGTGATCAAGAAAACAT 59.369 36.000 23.00 20.12 31.08 2.71
5512 5673 2.203800 TAGCGTCCTAGCAATGTTCG 57.796 50.000 0.00 0.00 40.15 3.95
5521 5682 7.327275 GTGTTCTCATTATTGATAGCGTCCTAG 59.673 40.741 0.00 0.00 0.00 3.02
5635 5796 8.529476 TCATGGTCTAAGGAAGAACTAAGTAAC 58.471 37.037 0.00 0.00 42.96 2.50
5755 5917 9.807649 GATGATTTTGGACATAGTAGCAAAAAT 57.192 29.630 0.00 0.00 0.00 1.82
5783 5945 5.964477 TCCTCCTGTGGTTTTATCTGATAGT 59.036 40.000 0.00 0.00 0.00 2.12
5916 6080 5.795766 TGCGTCAATTAATTTCGATCAGAC 58.204 37.500 19.88 12.15 0.00 3.51
5992 6156 8.142994 TCTCTCTAATCCAAATTAATTGACGC 57.857 34.615 0.39 0.00 41.85 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.