Multiple sequence alignment - TraesCS2D01G400500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G400500 chr2D 100.000 4589 0 0 1 4589 514655778 514660366 0.000000e+00 8475.0
1 TraesCS2D01G400500 chr2D 94.630 2961 129 14 1106 4052 283142997 283145941 0.000000e+00 4560.0
2 TraesCS2D01G400500 chr2B 98.665 2847 32 3 1127 3968 606483647 606486492 0.000000e+00 5042.0
3 TraesCS2D01G400500 chr2B 85.947 491 29 6 4137 4589 606490619 606491107 5.340000e-134 488.0
4 TraesCS2D01G400500 chr2B 96.532 173 6 0 960 1132 606483149 606483321 2.090000e-73 287.0
5 TraesCS2D01G400500 chr2A 98.592 2627 37 0 1088 3714 658744151 658746777 0.000000e+00 4647.0
6 TraesCS2D01G400500 chr2A 88.825 698 68 9 1 690 338451010 338451705 0.000000e+00 848.0
7 TraesCS2D01G400500 chr2A 88.714 700 70 8 1 693 340118318 340119015 0.000000e+00 846.0
8 TraesCS2D01G400500 chr2A 91.837 588 28 3 3707 4281 658746936 658747516 0.000000e+00 802.0
9 TraesCS2D01G400500 chr1D 89.511 696 66 6 1 690 165154329 165153635 0.000000e+00 874.0
10 TraesCS2D01G400500 chr1D 89.224 696 66 8 1 690 162236836 162236144 0.000000e+00 861.0
11 TraesCS2D01G400500 chr3D 88.968 698 67 9 1 690 120871333 120872028 0.000000e+00 854.0
12 TraesCS2D01G400500 chr3D 90.732 205 17 2 4094 4297 92889314 92889111 5.850000e-69 272.0
13 TraesCS2D01G400500 chr3A 88.953 697 67 10 1 690 314752851 314752158 0.000000e+00 852.0
14 TraesCS2D01G400500 chr6D 88.825 698 68 9 1 690 205330193 205329498 0.000000e+00 848.0
15 TraesCS2D01G400500 chr7D 88.793 696 70 7 1 690 315437431 315438124 0.000000e+00 846.0
16 TraesCS2D01G400500 chr4D 88.809 697 68 9 1 690 459338683 459337990 0.000000e+00 846.0
17 TraesCS2D01G400500 chr6A 97.375 381 9 1 891 1270 174326589 174326969 0.000000e+00 647.0
18 TraesCS2D01G400500 chr5D 92.683 41 2 1 4107 4147 35114070 35114109 1.780000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G400500 chr2D 514655778 514660366 4588 False 8475.0 8475 100.0000 1 4589 1 chr2D.!!$F2 4588
1 TraesCS2D01G400500 chr2D 283142997 283145941 2944 False 4560.0 4560 94.6300 1106 4052 1 chr2D.!!$F1 2946
2 TraesCS2D01G400500 chr2B 606483149 606486492 3343 False 2664.5 5042 97.5985 960 3968 2 chr2B.!!$F2 3008
3 TraesCS2D01G400500 chr2A 658744151 658747516 3365 False 2724.5 4647 95.2145 1088 4281 2 chr2A.!!$F3 3193
4 TraesCS2D01G400500 chr2A 338451010 338451705 695 False 848.0 848 88.8250 1 690 1 chr2A.!!$F1 689
5 TraesCS2D01G400500 chr2A 340118318 340119015 697 False 846.0 846 88.7140 1 693 1 chr2A.!!$F2 692
6 TraesCS2D01G400500 chr1D 165153635 165154329 694 True 874.0 874 89.5110 1 690 1 chr1D.!!$R2 689
7 TraesCS2D01G400500 chr1D 162236144 162236836 692 True 861.0 861 89.2240 1 690 1 chr1D.!!$R1 689
8 TraesCS2D01G400500 chr3D 120871333 120872028 695 False 854.0 854 88.9680 1 690 1 chr3D.!!$F1 689
9 TraesCS2D01G400500 chr3A 314752158 314752851 693 True 852.0 852 88.9530 1 690 1 chr3A.!!$R1 689
10 TraesCS2D01G400500 chr6D 205329498 205330193 695 True 848.0 848 88.8250 1 690 1 chr6D.!!$R1 689
11 TraesCS2D01G400500 chr7D 315437431 315438124 693 False 846.0 846 88.7930 1 690 1 chr7D.!!$F1 689
12 TraesCS2D01G400500 chr4D 459337990 459338683 693 True 846.0 846 88.8090 1 690 1 chr4D.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 912 0.034477 CGGGCCAAATCTACCCAACT 60.034 55.0 4.39 0.0 44.49 3.16 F
942 953 0.034960 TCGGATTTCCATCGGCCAAA 60.035 50.0 2.24 0.0 35.14 3.28 F
952 963 0.039527 ATCGGCCAAAACGTCAAAGC 60.040 50.0 2.24 0.0 0.00 3.51 F
956 967 0.248296 GCCAAAACGTCAAAGCGTCA 60.248 50.0 0.00 0.0 45.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2550 2904 1.701704 CACGCAAAAGCCCAGATTTC 58.298 50.000 0.0 0.0 0.0 2.17 R
3138 3492 1.768275 TCCAGCCTTGTGTTCTCTGAA 59.232 47.619 0.0 0.0 0.0 3.02 R
3552 3906 2.560981 ACAAATCCCTGCCCTAAAAACG 59.439 45.455 0.0 0.0 0.0 3.60 R
3920 4446 4.218417 ACATAAAGAGTTCTGCCGCAAATT 59.782 37.500 0.0 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.029681 GCAAGGGAAACAAGAACGGT 58.970 50.000 0.00 0.00 0.00 4.83
85 86 4.462483 GGACTTTGAAGCCACCATAATGAA 59.538 41.667 0.00 0.00 0.00 2.57
91 92 5.139001 TGAAGCCACCATAATGAATGCATA 58.861 37.500 0.00 0.00 33.44 3.14
101 102 4.411256 AATGAATGCATAAAGGCTTGGG 57.589 40.909 0.00 0.00 33.44 4.12
102 103 2.818921 TGAATGCATAAAGGCTTGGGT 58.181 42.857 0.00 0.00 34.04 4.51
157 158 7.728532 TGCATCCAGAGACTATTATAGGTGTTA 59.271 37.037 4.15 0.00 0.00 2.41
180 181 3.433031 CGTCACCTTATTATTGGGCCAGA 60.433 47.826 6.23 0.00 0.00 3.86
183 184 2.856231 ACCTTATTATTGGGCCAGACCA 59.144 45.455 6.23 0.00 42.05 4.02
200 204 8.568794 GGCCAGACCATAATTTAGAAATACTTC 58.431 37.037 0.00 0.00 38.86 3.01
289 295 1.546773 CCAAGGGGTCACGAAATTCCA 60.547 52.381 0.00 0.00 0.00 3.53
291 298 0.321298 AGGGGTCACGAAATTCCACG 60.321 55.000 0.00 0.00 0.00 4.94
300 307 3.374058 CACGAAATTCCACGCTATTCCTT 59.626 43.478 0.00 0.00 0.00 3.36
312 319 9.642343 TCCACGCTATTCCTTCATATATATAGT 57.358 33.333 0.00 0.00 0.00 2.12
332 339 1.747355 TCCTTAGGGCGTCGTTTAGAG 59.253 52.381 0.00 0.00 0.00 2.43
336 344 2.075979 AGGGCGTCGTTTAGAGTTTC 57.924 50.000 0.00 0.00 0.00 2.78
375 384 0.804364 TTCGCCATAGCTGCAACTTG 59.196 50.000 1.02 0.00 36.60 3.16
376 385 0.321564 TCGCCATAGCTGCAACTTGT 60.322 50.000 1.02 0.00 36.60 3.16
390 400 4.630505 TGCAACTTGTGTACTTCGTTTGTA 59.369 37.500 0.00 0.00 0.00 2.41
419 429 2.909006 ACCAGACCAAGATGTCACAGAT 59.091 45.455 0.00 0.00 37.73 2.90
420 430 3.328931 ACCAGACCAAGATGTCACAGATT 59.671 43.478 0.00 0.00 37.73 2.40
426 436 3.307975 CCAAGATGTCACAGATTCCCACT 60.308 47.826 0.00 0.00 0.00 4.00
487 498 7.114754 TCCAGATTGCAATCTCAGTTTCTTAT 58.885 34.615 33.95 10.78 43.65 1.73
518 529 4.222145 TCGTTTACCTGCAGGAAATAGACT 59.778 41.667 39.19 16.51 38.94 3.24
526 537 2.482142 GCAGGAAATAGACTCTCGTGGG 60.482 54.545 0.00 0.00 0.00 4.61
546 557 2.511600 GGTTGATCGTGCTCCGGG 60.512 66.667 0.00 0.00 37.11 5.73
557 568 1.146263 GCTCCGGGGTGGTCAATAG 59.854 63.158 1.62 0.00 39.52 1.73
614 625 3.173399 CGTCTTCACACGTTCGTAGTA 57.827 47.619 0.00 0.00 34.95 1.82
622 633 3.306973 CACACGTTCGTAGTAGGATCGTA 59.693 47.826 21.83 0.00 36.62 3.43
658 669 6.295802 CCACCAAAAATGATAACCACCATCTT 60.296 38.462 0.00 0.00 0.00 2.40
693 704 4.565652 GGACACCTTTGCCTCTATCAGAAA 60.566 45.833 0.00 0.00 0.00 2.52
694 705 4.327680 ACACCTTTGCCTCTATCAGAAAC 58.672 43.478 0.00 0.00 0.00 2.78
695 706 3.372206 CACCTTTGCCTCTATCAGAAACG 59.628 47.826 0.00 0.00 0.00 3.60
696 707 3.008049 ACCTTTGCCTCTATCAGAAACGT 59.992 43.478 0.00 0.00 0.00 3.99
697 708 4.222145 ACCTTTGCCTCTATCAGAAACGTA 59.778 41.667 0.00 0.00 0.00 3.57
698 709 4.806247 CCTTTGCCTCTATCAGAAACGTAG 59.194 45.833 0.00 0.00 0.00 3.51
713 724 2.758009 ACGTAGTTGTTGCGGTTATGT 58.242 42.857 0.00 0.00 37.78 2.29
714 725 3.132925 ACGTAGTTGTTGCGGTTATGTT 58.867 40.909 0.00 0.00 37.78 2.71
715 726 3.059461 ACGTAGTTGTTGCGGTTATGTTG 60.059 43.478 0.00 0.00 37.78 3.33
716 727 3.665848 CGTAGTTGTTGCGGTTATGTTGG 60.666 47.826 0.00 0.00 0.00 3.77
717 728 1.000717 AGTTGTTGCGGTTATGTTGGC 60.001 47.619 0.00 0.00 0.00 4.52
718 729 0.315568 TTGTTGCGGTTATGTTGGCC 59.684 50.000 0.00 0.00 0.00 5.36
719 730 1.214325 GTTGCGGTTATGTTGGCCC 59.786 57.895 0.00 0.00 0.00 5.80
720 731 1.075836 TTGCGGTTATGTTGGCCCT 59.924 52.632 0.00 0.00 0.00 5.19
721 732 0.540830 TTGCGGTTATGTTGGCCCTT 60.541 50.000 0.00 0.00 0.00 3.95
722 733 0.540830 TGCGGTTATGTTGGCCCTTT 60.541 50.000 0.00 0.00 0.00 3.11
723 734 0.606096 GCGGTTATGTTGGCCCTTTT 59.394 50.000 0.00 0.00 0.00 2.27
724 735 1.001520 GCGGTTATGTTGGCCCTTTTT 59.998 47.619 0.00 0.00 0.00 1.94
743 754 3.616956 TTTATCTGCTGTGTCAGAGGG 57.383 47.619 0.00 0.00 45.22 4.30
744 755 0.826715 TATCTGCTGTGTCAGAGGGC 59.173 55.000 0.00 0.00 45.22 5.19
745 756 1.908340 ATCTGCTGTGTCAGAGGGCC 61.908 60.000 0.00 0.00 45.22 5.80
746 757 2.848679 TGCTGTGTCAGAGGGCCA 60.849 61.111 6.18 0.00 32.44 5.36
747 758 2.194388 CTGCTGTGTCAGAGGGCCAT 62.194 60.000 6.18 0.00 36.19 4.40
748 759 1.451028 GCTGTGTCAGAGGGCCATC 60.451 63.158 10.05 10.05 32.44 3.51
749 760 1.222936 CTGTGTCAGAGGGCCATCC 59.777 63.158 15.12 0.00 32.44 3.51
764 775 4.729868 GGCCATCCCACCATATTATATCC 58.270 47.826 0.00 0.00 0.00 2.59
765 776 4.416848 GGCCATCCCACCATATTATATCCT 59.583 45.833 0.00 0.00 0.00 3.24
766 777 5.103515 GGCCATCCCACCATATTATATCCTT 60.104 44.000 0.00 0.00 0.00 3.36
767 778 6.435164 GCCATCCCACCATATTATATCCTTT 58.565 40.000 0.00 0.00 0.00 3.11
768 779 7.367368 GGCCATCCCACCATATTATATCCTTTA 60.367 40.741 0.00 0.00 0.00 1.85
769 780 7.721399 GCCATCCCACCATATTATATCCTTTAG 59.279 40.741 0.00 0.00 0.00 1.85
770 781 7.721399 CCATCCCACCATATTATATCCTTTAGC 59.279 40.741 0.00 0.00 0.00 3.09
771 782 8.497745 CATCCCACCATATTATATCCTTTAGCT 58.502 37.037 0.00 0.00 0.00 3.32
772 783 7.861629 TCCCACCATATTATATCCTTTAGCTG 58.138 38.462 0.00 0.00 0.00 4.24
773 784 7.461043 TCCCACCATATTATATCCTTTAGCTGT 59.539 37.037 0.00 0.00 0.00 4.40
774 785 8.768397 CCCACCATATTATATCCTTTAGCTGTA 58.232 37.037 0.00 0.00 0.00 2.74
832 843 4.996976 GCTTGTTGCGAGAGAGGA 57.003 55.556 0.00 0.00 0.00 3.71
833 844 2.748268 GCTTGTTGCGAGAGAGGAG 58.252 57.895 0.00 0.00 0.00 3.69
834 845 0.037790 GCTTGTTGCGAGAGAGGAGT 60.038 55.000 0.00 0.00 0.00 3.85
835 846 1.989430 CTTGTTGCGAGAGAGGAGTC 58.011 55.000 0.00 0.00 0.00 3.36
836 847 1.270826 CTTGTTGCGAGAGAGGAGTCA 59.729 52.381 0.00 0.00 0.00 3.41
837 848 1.328279 TGTTGCGAGAGAGGAGTCAA 58.672 50.000 0.00 0.00 0.00 3.18
838 849 1.270826 TGTTGCGAGAGAGGAGTCAAG 59.729 52.381 0.00 0.00 0.00 3.02
839 850 1.271102 GTTGCGAGAGAGGAGTCAAGT 59.729 52.381 0.00 0.00 0.00 3.16
840 851 1.621992 TGCGAGAGAGGAGTCAAGTT 58.378 50.000 0.00 0.00 0.00 2.66
841 852 1.542030 TGCGAGAGAGGAGTCAAGTTC 59.458 52.381 0.00 0.00 0.00 3.01
842 853 1.135228 GCGAGAGAGGAGTCAAGTTCC 60.135 57.143 0.00 0.00 34.83 3.62
843 854 1.131504 CGAGAGAGGAGTCAAGTTCCG 59.868 57.143 0.00 0.00 39.77 4.30
844 855 1.474879 GAGAGAGGAGTCAAGTTCCGG 59.525 57.143 0.00 0.00 39.77 5.14
845 856 1.075698 AGAGAGGAGTCAAGTTCCGGA 59.924 52.381 0.00 0.00 39.77 5.14
846 857 1.202817 GAGAGGAGTCAAGTTCCGGAC 59.797 57.143 1.83 0.00 39.77 4.79
847 858 1.203075 AGAGGAGTCAAGTTCCGGACT 60.203 52.381 1.83 1.45 46.51 3.85
848 859 0.969894 AGGAGTCAAGTTCCGGACTG 59.030 55.000 1.83 1.71 44.03 3.51
849 860 0.966920 GGAGTCAAGTTCCGGACTGA 59.033 55.000 1.83 4.60 44.03 3.41
850 861 1.067495 GGAGTCAAGTTCCGGACTGAG 60.067 57.143 1.83 2.26 44.03 3.35
851 862 1.887198 GAGTCAAGTTCCGGACTGAGA 59.113 52.381 1.83 4.65 44.03 3.27
852 863 2.296471 GAGTCAAGTTCCGGACTGAGAA 59.704 50.000 1.83 0.00 44.03 2.87
853 864 2.297597 AGTCAAGTTCCGGACTGAGAAG 59.702 50.000 1.83 0.00 42.49 2.85
854 865 2.296471 GTCAAGTTCCGGACTGAGAAGA 59.704 50.000 1.83 0.00 39.00 2.87
855 866 2.558795 TCAAGTTCCGGACTGAGAAGAG 59.441 50.000 1.83 0.00 39.00 2.85
856 867 1.551452 AGTTCCGGACTGAGAAGAGG 58.449 55.000 1.83 0.00 37.17 3.69
857 868 0.533032 GTTCCGGACTGAGAAGAGGG 59.467 60.000 1.83 0.00 0.00 4.30
858 869 0.408309 TTCCGGACTGAGAAGAGGGA 59.592 55.000 1.83 0.00 0.00 4.20
859 870 0.408309 TCCGGACTGAGAAGAGGGAA 59.592 55.000 0.00 0.00 0.00 3.97
860 871 0.533032 CCGGACTGAGAAGAGGGAAC 59.467 60.000 0.00 0.00 0.00 3.62
861 872 1.257743 CGGACTGAGAAGAGGGAACA 58.742 55.000 0.00 0.00 0.00 3.18
862 873 1.827969 CGGACTGAGAAGAGGGAACAT 59.172 52.381 0.00 0.00 0.00 2.71
863 874 2.417924 CGGACTGAGAAGAGGGAACATG 60.418 54.545 0.00 0.00 0.00 3.21
864 875 2.626840 GACTGAGAAGAGGGAACATGC 58.373 52.381 0.00 0.00 0.00 4.06
865 876 1.280421 ACTGAGAAGAGGGAACATGCC 59.720 52.381 0.00 0.00 0.00 4.40
866 877 0.250234 TGAGAAGAGGGAACATGCCG 59.750 55.000 0.00 0.00 30.73 5.69
867 878 1.078143 AGAAGAGGGAACATGCCGC 60.078 57.895 0.00 0.00 30.73 6.53
868 879 2.044946 AAGAGGGAACATGCCGCC 60.045 61.111 0.00 0.00 30.73 6.13
869 880 2.819984 GAAGAGGGAACATGCCGCCA 62.820 60.000 0.00 0.00 30.73 5.69
870 881 2.825836 GAGGGAACATGCCGCCAG 60.826 66.667 0.00 0.00 30.73 4.85
875 886 4.992740 AACATGCCGCCAGCCCAA 62.993 61.111 0.00 0.00 42.71 4.12
876 887 4.764771 ACATGCCGCCAGCCCAAT 62.765 61.111 0.00 0.00 42.71 3.16
877 888 3.463585 CATGCCGCCAGCCCAATT 61.464 61.111 0.00 0.00 42.71 2.32
878 889 3.463585 ATGCCGCCAGCCCAATTG 61.464 61.111 0.00 0.00 42.71 2.32
879 890 4.992740 TGCCGCCAGCCCAATTGT 62.993 61.111 4.43 0.00 42.71 2.71
880 891 3.694538 GCCGCCAGCCCAATTGTT 61.695 61.111 4.43 0.00 34.35 2.83
881 892 2.262292 CCGCCAGCCCAATTGTTG 59.738 61.111 4.43 0.10 0.00 3.33
882 893 2.432972 CGCCAGCCCAATTGTTGC 60.433 61.111 4.43 6.88 0.00 4.17
883 894 2.432972 GCCAGCCCAATTGTTGCG 60.433 61.111 4.43 3.96 0.00 4.85
884 895 2.262292 CCAGCCCAATTGTTGCGG 59.738 61.111 4.43 7.44 0.00 5.69
885 896 2.262292 CAGCCCAATTGTTGCGGG 59.738 61.111 4.43 0.00 43.42 6.13
888 899 3.309506 CCCAATTGTTGCGGGCCA 61.310 61.111 4.39 0.00 31.89 5.36
889 900 2.739784 CCAATTGTTGCGGGCCAA 59.260 55.556 4.39 0.00 0.00 4.52
890 901 1.070445 CCAATTGTTGCGGGCCAAA 59.930 52.632 4.39 0.00 34.68 3.28
891 902 0.321475 CCAATTGTTGCGGGCCAAAT 60.321 50.000 4.39 0.00 34.68 2.32
892 903 1.077915 CAATTGTTGCGGGCCAAATC 58.922 50.000 4.39 0.00 34.68 2.17
893 904 0.975887 AATTGTTGCGGGCCAAATCT 59.024 45.000 4.39 0.00 34.68 2.40
894 905 1.846007 ATTGTTGCGGGCCAAATCTA 58.154 45.000 4.39 0.00 34.68 1.98
895 906 0.885196 TTGTTGCGGGCCAAATCTAC 59.115 50.000 4.39 0.00 34.68 2.59
896 907 0.963355 TGTTGCGGGCCAAATCTACC 60.963 55.000 4.39 0.00 34.68 3.18
897 908 1.379309 TTGCGGGCCAAATCTACCC 60.379 57.895 4.39 0.00 40.51 3.69
898 909 2.143575 TTGCGGGCCAAATCTACCCA 62.144 55.000 4.39 0.00 44.49 4.51
899 910 1.379309 GCGGGCCAAATCTACCCAA 60.379 57.895 4.39 0.00 44.49 4.12
900 911 1.663379 GCGGGCCAAATCTACCCAAC 61.663 60.000 4.39 0.00 44.49 3.77
901 912 0.034477 CGGGCCAAATCTACCCAACT 60.034 55.000 4.39 0.00 44.49 3.16
902 913 1.763968 GGGCCAAATCTACCCAACTC 58.236 55.000 4.39 0.00 43.64 3.01
903 914 1.285078 GGGCCAAATCTACCCAACTCT 59.715 52.381 4.39 0.00 43.64 3.24
904 915 2.291605 GGGCCAAATCTACCCAACTCTT 60.292 50.000 4.39 0.00 43.64 2.85
905 916 2.755103 GGCCAAATCTACCCAACTCTTG 59.245 50.000 0.00 0.00 0.00 3.02
906 917 3.421844 GCCAAATCTACCCAACTCTTGT 58.578 45.455 0.00 0.00 0.00 3.16
907 918 3.191371 GCCAAATCTACCCAACTCTTGTG 59.809 47.826 0.00 0.00 0.00 3.33
908 919 3.191371 CCAAATCTACCCAACTCTTGTGC 59.809 47.826 0.00 0.00 0.00 4.57
909 920 3.788227 AATCTACCCAACTCTTGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
910 921 2.839486 TCTACCCAACTCTTGTGCAG 57.161 50.000 0.00 0.00 0.00 4.41
911 922 2.325484 TCTACCCAACTCTTGTGCAGA 58.675 47.619 0.00 0.00 0.00 4.26
912 923 2.037251 TCTACCCAACTCTTGTGCAGAC 59.963 50.000 0.00 0.00 0.00 3.51
913 924 0.532862 ACCCAACTCTTGTGCAGACG 60.533 55.000 0.00 0.00 0.00 4.18
914 925 1.571460 CCAACTCTTGTGCAGACGC 59.429 57.895 0.00 0.00 39.24 5.19
915 926 1.202568 CAACTCTTGTGCAGACGCG 59.797 57.895 3.53 3.53 42.97 6.01
916 927 1.067416 AACTCTTGTGCAGACGCGA 59.933 52.632 15.93 0.00 42.97 5.87
917 928 0.941463 AACTCTTGTGCAGACGCGAG 60.941 55.000 15.93 2.87 42.97 5.03
918 929 2.724708 CTCTTGTGCAGACGCGAGC 61.725 63.158 15.93 14.77 42.97 5.03
919 930 3.782244 CTTGTGCAGACGCGAGCC 61.782 66.667 15.93 8.57 42.97 4.70
930 941 4.832608 GCGAGCCGGGTCGGATTT 62.833 66.667 45.30 0.00 45.97 2.17
931 942 2.585247 CGAGCCGGGTCGGATTTC 60.585 66.667 40.82 12.02 45.97 2.17
932 943 2.203029 GAGCCGGGTCGGATTTCC 60.203 66.667 19.39 0.00 45.97 3.13
933 944 3.006728 AGCCGGGTCGGATTTCCA 61.007 61.111 10.79 0.00 45.97 3.53
934 945 2.325393 GAGCCGGGTCGGATTTCCAT 62.325 60.000 19.39 0.00 45.97 3.41
935 946 2.325393 AGCCGGGTCGGATTTCCATC 62.325 60.000 10.79 0.00 45.97 3.51
936 947 4.027755 CGGGTCGGATTTCCATCG 57.972 61.111 0.00 0.00 35.14 3.84
937 948 1.594293 CGGGTCGGATTTCCATCGG 60.594 63.158 0.00 0.00 35.14 4.18
938 949 1.892391 GGGTCGGATTTCCATCGGC 60.892 63.158 0.00 0.00 35.14 5.54
939 950 1.892391 GGTCGGATTTCCATCGGCC 60.892 63.158 0.00 0.00 41.47 6.13
940 951 1.153249 GTCGGATTTCCATCGGCCA 60.153 57.895 2.24 0.00 35.14 5.36
941 952 0.746563 GTCGGATTTCCATCGGCCAA 60.747 55.000 2.24 0.00 35.14 4.52
942 953 0.034960 TCGGATTTCCATCGGCCAAA 60.035 50.000 2.24 0.00 35.14 3.28
943 954 0.814457 CGGATTTCCATCGGCCAAAA 59.186 50.000 2.24 0.00 35.14 2.44
944 955 1.469079 CGGATTTCCATCGGCCAAAAC 60.469 52.381 2.24 0.00 35.14 2.43
945 956 1.469079 GGATTTCCATCGGCCAAAACG 60.469 52.381 2.24 0.00 35.64 3.60
946 957 1.201414 GATTTCCATCGGCCAAAACGT 59.799 47.619 2.24 0.00 0.00 3.99
947 958 0.594110 TTTCCATCGGCCAAAACGTC 59.406 50.000 2.24 0.00 0.00 4.34
948 959 0.535328 TTCCATCGGCCAAAACGTCA 60.535 50.000 2.24 0.00 0.00 4.35
949 960 0.535328 TCCATCGGCCAAAACGTCAA 60.535 50.000 2.24 0.00 0.00 3.18
950 961 0.312416 CCATCGGCCAAAACGTCAAA 59.688 50.000 2.24 0.00 0.00 2.69
951 962 1.665735 CCATCGGCCAAAACGTCAAAG 60.666 52.381 2.24 0.00 0.00 2.77
952 963 0.039527 ATCGGCCAAAACGTCAAAGC 60.040 50.000 2.24 0.00 0.00 3.51
953 964 2.008697 CGGCCAAAACGTCAAAGCG 61.009 57.895 2.24 0.00 37.94 4.68
955 966 0.933047 GGCCAAAACGTCAAAGCGTC 60.933 55.000 0.00 0.00 45.00 5.19
956 967 0.248296 GCCAAAACGTCAAAGCGTCA 60.248 50.000 0.00 0.00 45.00 4.35
957 968 1.795889 GCCAAAACGTCAAAGCGTCAA 60.796 47.619 0.00 0.00 45.00 3.18
958 969 2.520979 CCAAAACGTCAAAGCGTCAAA 58.479 42.857 0.00 0.00 45.00 2.69
969 980 3.858040 GCGTCAAAGCTGATACACG 57.142 52.632 0.00 0.00 33.05 4.49
1118 1129 3.310860 CTCCCGCTACCACCACCAC 62.311 68.421 0.00 0.00 0.00 4.16
1300 1654 0.320073 GGTGTTCGACCGAATGACCA 60.320 55.000 21.36 9.19 38.40 4.02
1305 1659 2.818274 GACCGAATGACCACCCGC 60.818 66.667 0.00 0.00 0.00 6.13
1428 1782 1.882352 GCCCCCACAGAGTACACTTTG 60.882 57.143 0.00 0.00 34.59 2.77
1515 1869 2.348888 CGCCAAGGGACGGTACTCT 61.349 63.158 0.00 0.00 0.00 3.24
2115 2469 3.399181 CTGCAGGGGCTCGGGTTA 61.399 66.667 5.57 0.00 41.91 2.85
2320 2674 2.022195 GTAGGTCTGGAGATGCACGTA 58.978 52.381 0.00 0.00 0.00 3.57
2329 2683 3.435327 TGGAGATGCACGTATGTTGTTTC 59.565 43.478 0.00 0.00 0.00 2.78
2550 2904 1.011968 AAATGCATGTGCTTGCTGCG 61.012 50.000 0.00 0.00 46.63 5.18
3138 3492 2.629137 TGAATCAGCAAAGTGGCATTGT 59.371 40.909 3.05 0.00 35.83 2.71
3552 3906 2.996621 CAGAGACTCGAATGGGTTTCAC 59.003 50.000 0.00 0.00 33.66 3.18
4055 4593 6.035758 GTGTACTTACAGTTAGCACTAATGCC 59.964 42.308 0.00 0.00 44.43 4.40
4080 4618 6.046593 CGCCTACAAAATCATTACCTACTGA 58.953 40.000 0.00 0.00 0.00 3.41
4284 4823 3.550431 CCCGCGTCCATCCCAGAT 61.550 66.667 4.92 0.00 0.00 2.90
4285 4824 2.029666 CCGCGTCCATCCCAGATC 59.970 66.667 4.92 0.00 0.00 2.75
4286 4825 2.029666 CGCGTCCATCCCAGATCC 59.970 66.667 0.00 0.00 0.00 3.36
4287 4826 2.427753 GCGTCCATCCCAGATCCC 59.572 66.667 0.00 0.00 0.00 3.85
4288 4827 3.151906 CGTCCATCCCAGATCCCC 58.848 66.667 0.00 0.00 0.00 4.81
4289 4828 1.460305 CGTCCATCCCAGATCCCCT 60.460 63.158 0.00 0.00 0.00 4.79
4290 4829 1.476007 CGTCCATCCCAGATCCCCTC 61.476 65.000 0.00 0.00 0.00 4.30
4291 4830 1.130678 GTCCATCCCAGATCCCCTCC 61.131 65.000 0.00 0.00 0.00 4.30
4292 4831 1.849823 CCATCCCAGATCCCCTCCC 60.850 68.421 0.00 0.00 0.00 4.30
4293 4832 2.205462 ATCCCAGATCCCCTCCCG 59.795 66.667 0.00 0.00 0.00 5.14
4294 4833 4.880426 TCCCAGATCCCCTCCCGC 62.880 72.222 0.00 0.00 0.00 6.13
4298 4837 4.888325 AGATCCCCTCCCGCCCAG 62.888 72.222 0.00 0.00 0.00 4.45
4311 4850 3.461773 CCCAGCGGTCCATCGACT 61.462 66.667 0.00 0.00 39.15 4.18
4312 4851 2.202797 CCAGCGGTCCATCGACTG 60.203 66.667 0.00 0.00 46.60 3.51
4313 4852 2.710902 CCAGCGGTCCATCGACTGA 61.711 63.158 3.16 0.00 46.80 3.41
4314 4853 1.439228 CAGCGGTCCATCGACTGAT 59.561 57.895 3.16 0.00 46.80 2.90
4315 4854 0.596083 CAGCGGTCCATCGACTGATC 60.596 60.000 3.16 0.00 46.80 2.92
4316 4855 0.753479 AGCGGTCCATCGACTGATCT 60.753 55.000 3.16 0.00 46.80 2.75
4317 4856 0.596083 GCGGTCCATCGACTGATCTG 60.596 60.000 3.16 0.00 46.80 2.90
4318 4857 0.031314 CGGTCCATCGACTGATCTGG 59.969 60.000 4.49 0.00 46.80 3.86
4319 4858 1.115467 GGTCCATCGACTGATCTGGT 58.885 55.000 4.49 0.00 39.15 4.00
4320 4859 1.067821 GGTCCATCGACTGATCTGGTC 59.932 57.143 4.49 6.89 39.15 4.02
4321 4860 1.067821 GTCCATCGACTGATCTGGTCC 59.932 57.143 4.49 0.00 35.99 4.46
4322 4861 1.063642 TCCATCGACTGATCTGGTCCT 60.064 52.381 4.49 0.00 30.49 3.85
4323 4862 1.759445 CCATCGACTGATCTGGTCCTT 59.241 52.381 4.49 0.00 30.49 3.36
4324 4863 2.223923 CCATCGACTGATCTGGTCCTTC 60.224 54.545 4.49 0.00 30.49 3.46
4325 4864 1.475403 TCGACTGATCTGGTCCTTCC 58.525 55.000 4.49 0.00 0.00 3.46
4326 4865 0.101399 CGACTGATCTGGTCCTTCCG 59.899 60.000 4.49 0.00 39.52 4.30
4327 4866 0.179097 GACTGATCTGGTCCTTCCGC 60.179 60.000 4.49 0.00 39.52 5.54
4328 4867 1.144936 CTGATCTGGTCCTTCCGCC 59.855 63.158 0.00 0.00 39.52 6.13
4329 4868 2.107141 GATCTGGTCCTTCCGCCG 59.893 66.667 0.00 0.00 39.52 6.46
4330 4869 4.162690 ATCTGGTCCTTCCGCCGC 62.163 66.667 0.00 0.00 39.52 6.53
4338 4877 4.489771 CTTCCGCCGCCTCCCAAT 62.490 66.667 0.00 0.00 0.00 3.16
4339 4878 4.483243 TTCCGCCGCCTCCCAATC 62.483 66.667 0.00 0.00 0.00 2.67
4345 4884 4.794648 CGCCTCCCAATCCGGCAA 62.795 66.667 0.00 0.00 43.95 4.52
4346 4885 3.140814 GCCTCCCAATCCGGCAAC 61.141 66.667 0.00 0.00 43.25 4.17
4381 4920 4.514577 CCGCGAATCCTGCTCCGT 62.515 66.667 8.23 0.00 0.00 4.69
4382 4921 3.257561 CGCGAATCCTGCTCCGTG 61.258 66.667 0.00 0.00 0.00 4.94
4383 4922 2.892425 GCGAATCCTGCTCCGTGG 60.892 66.667 0.00 0.00 0.00 4.94
4384 4923 2.202932 CGAATCCTGCTCCGTGGG 60.203 66.667 0.00 0.00 0.00 4.61
4385 4924 2.190578 GAATCCTGCTCCGTGGGG 59.809 66.667 0.00 0.00 0.00 4.96
4386 4925 2.285368 AATCCTGCTCCGTGGGGA 60.285 61.111 0.00 0.00 41.08 4.81
4402 4941 2.586792 GAGTGCTCCAAGGCCGAT 59.413 61.111 0.00 0.00 0.00 4.18
4403 4942 1.817099 GAGTGCTCCAAGGCCGATG 60.817 63.158 0.00 0.00 0.00 3.84
4404 4943 3.512516 GTGCTCCAAGGCCGATGC 61.513 66.667 0.00 0.00 0.00 3.91
4405 4944 3.720601 TGCTCCAAGGCCGATGCT 61.721 61.111 0.00 0.00 37.74 3.79
4406 4945 3.207669 GCTCCAAGGCCGATGCTG 61.208 66.667 0.00 0.00 37.74 4.41
4407 4946 2.515523 CTCCAAGGCCGATGCTGG 60.516 66.667 0.00 0.43 37.74 4.85
4415 4954 3.473647 CCGATGCTGGCCTCTCCA 61.474 66.667 3.32 0.00 44.18 3.86
4416 4955 2.202987 CGATGCTGGCCTCTCCAC 60.203 66.667 3.32 0.00 40.72 4.02
4417 4956 2.191641 GATGCTGGCCTCTCCACC 59.808 66.667 3.32 0.00 40.72 4.61
4418 4957 3.412624 GATGCTGGCCTCTCCACCC 62.413 68.421 3.32 0.00 40.72 4.61
4419 4958 3.958629 ATGCTGGCCTCTCCACCCT 62.959 63.158 3.32 0.00 40.72 4.34
4420 4959 4.106925 GCTGGCCTCTCCACCCTG 62.107 72.222 3.32 0.00 40.72 4.45
4421 4960 4.106925 CTGGCCTCTCCACCCTGC 62.107 72.222 3.32 0.00 40.72 4.85
4422 4961 4.980592 TGGCCTCTCCACCCTGCA 62.981 66.667 3.32 0.00 40.72 4.41
4423 4962 3.415087 GGCCTCTCCACCCTGCAT 61.415 66.667 0.00 0.00 34.01 3.96
4424 4963 2.124403 GCCTCTCCACCCTGCATG 60.124 66.667 0.00 0.00 0.00 4.06
4425 4964 2.976490 GCCTCTCCACCCTGCATGT 61.976 63.158 0.00 0.00 0.00 3.21
4426 4965 1.687612 CCTCTCCACCCTGCATGTT 59.312 57.895 0.00 0.00 0.00 2.71
4427 4966 0.679002 CCTCTCCACCCTGCATGTTG 60.679 60.000 0.00 0.00 0.00 3.33
4428 4967 0.679002 CTCTCCACCCTGCATGTTGG 60.679 60.000 0.00 0.00 0.00 3.77
4429 4968 1.133181 TCTCCACCCTGCATGTTGGA 61.133 55.000 7.97 7.97 0.00 3.53
4430 4969 0.962356 CTCCACCCTGCATGTTGGAC 60.962 60.000 4.10 0.00 0.00 4.02
4431 4970 1.228521 CCACCCTGCATGTTGGACA 60.229 57.895 0.00 0.00 0.00 4.02
4432 4971 0.827089 CCACCCTGCATGTTGGACAA 60.827 55.000 0.00 0.00 0.00 3.18
4433 4972 0.314935 CACCCTGCATGTTGGACAAC 59.685 55.000 8.19 8.19 41.50 3.32
4434 4973 0.827507 ACCCTGCATGTTGGACAACC 60.828 55.000 12.21 0.00 40.46 3.77
4435 4974 0.827089 CCCTGCATGTTGGACAACCA 60.827 55.000 12.21 3.18 45.34 3.67
4436 4975 0.314935 CCTGCATGTTGGACAACCAC 59.685 55.000 12.21 3.14 46.80 4.16
4437 4976 0.040157 CTGCATGTTGGACAACCACG 60.040 55.000 12.21 2.69 46.80 4.94
4438 4977 1.371635 GCATGTTGGACAACCACGC 60.372 57.895 12.21 8.37 46.80 5.34
4439 4978 1.285641 CATGTTGGACAACCACGCC 59.714 57.895 12.21 0.00 46.80 5.68
4440 4979 1.150536 ATGTTGGACAACCACGCCT 59.849 52.632 12.21 0.00 46.80 5.52
4441 4980 0.467290 ATGTTGGACAACCACGCCTT 60.467 50.000 12.21 0.00 46.80 4.35
4442 4981 0.180642 TGTTGGACAACCACGCCTTA 59.819 50.000 12.21 0.00 46.80 2.69
4443 4982 1.202830 TGTTGGACAACCACGCCTTAT 60.203 47.619 12.21 0.00 46.80 1.73
4444 4983 1.199097 GTTGGACAACCACGCCTTATG 59.801 52.381 3.85 0.00 46.80 1.90
4445 4984 0.398696 TGGACAACCACGCCTTATGT 59.601 50.000 0.00 0.00 41.77 2.29
4446 4985 1.084289 GGACAACCACGCCTTATGTC 58.916 55.000 0.00 0.00 39.65 3.06
4447 4986 1.084289 GACAACCACGCCTTATGTCC 58.916 55.000 0.00 0.00 35.51 4.02
4448 4987 0.398696 ACAACCACGCCTTATGTCCA 59.601 50.000 0.00 0.00 0.00 4.02
4449 4988 1.004277 ACAACCACGCCTTATGTCCAT 59.996 47.619 0.00 0.00 0.00 3.41
4450 4989 1.670811 CAACCACGCCTTATGTCCATC 59.329 52.381 0.00 0.00 0.00 3.51
4451 4990 0.179084 ACCACGCCTTATGTCCATCG 60.179 55.000 0.00 0.00 0.00 3.84
4452 4991 0.179084 CCACGCCTTATGTCCATCGT 60.179 55.000 0.00 0.00 0.00 3.73
4453 4992 1.067974 CCACGCCTTATGTCCATCGTA 59.932 52.381 0.00 0.00 0.00 3.43
4454 4993 2.394708 CACGCCTTATGTCCATCGTAG 58.605 52.381 0.00 0.00 0.00 3.51
4455 4994 2.029623 ACGCCTTATGTCCATCGTAGT 58.970 47.619 0.00 0.00 0.00 2.73
4456 4995 2.429610 ACGCCTTATGTCCATCGTAGTT 59.570 45.455 0.00 0.00 0.00 2.24
4457 4996 3.633525 ACGCCTTATGTCCATCGTAGTTA 59.366 43.478 0.00 0.00 0.00 2.24
4458 4997 4.098349 ACGCCTTATGTCCATCGTAGTTAA 59.902 41.667 0.00 0.00 0.00 2.01
4459 4998 4.680110 CGCCTTATGTCCATCGTAGTTAAG 59.320 45.833 0.00 0.00 0.00 1.85
4460 4999 4.448060 GCCTTATGTCCATCGTAGTTAAGC 59.552 45.833 0.00 0.00 0.00 3.09
4461 5000 4.989168 CCTTATGTCCATCGTAGTTAAGCC 59.011 45.833 0.00 0.00 0.00 4.35
4462 5001 2.572191 TGTCCATCGTAGTTAAGCCG 57.428 50.000 0.00 0.00 0.00 5.52
4463 5002 1.820519 TGTCCATCGTAGTTAAGCCGT 59.179 47.619 0.00 0.00 0.00 5.68
4464 5003 2.159338 TGTCCATCGTAGTTAAGCCGTC 60.159 50.000 0.00 0.00 0.00 4.79
4465 5004 2.093890 TCCATCGTAGTTAAGCCGTCA 58.906 47.619 0.00 0.00 0.00 4.35
4466 5005 2.159338 TCCATCGTAGTTAAGCCGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
4467 5006 2.190981 CATCGTAGTTAAGCCGTCACC 58.809 52.381 0.00 0.00 0.00 4.02
4468 5007 0.527565 TCGTAGTTAAGCCGTCACCC 59.472 55.000 0.00 0.00 0.00 4.61
4469 5008 0.459063 CGTAGTTAAGCCGTCACCCC 60.459 60.000 0.00 0.00 0.00 4.95
4470 5009 0.459063 GTAGTTAAGCCGTCACCCCG 60.459 60.000 0.00 0.00 0.00 5.73
4471 5010 2.229690 TAGTTAAGCCGTCACCCCGC 62.230 60.000 0.00 0.00 0.00 6.13
4472 5011 4.745751 TTAAGCCGTCACCCCGCG 62.746 66.667 0.00 0.00 0.00 6.46
4487 5026 3.798511 GCGCTAGCCCTTCCCCTT 61.799 66.667 9.66 0.00 37.42 3.95
4488 5027 2.506472 CGCTAGCCCTTCCCCTTC 59.494 66.667 9.66 0.00 0.00 3.46
4489 5028 2.506472 GCTAGCCCTTCCCCTTCG 59.494 66.667 2.29 0.00 0.00 3.79
4490 5029 3.108288 GCTAGCCCTTCCCCTTCGG 62.108 68.421 2.29 0.00 0.00 4.30
4499 5038 4.195334 CCCCTTCGGGCCATGAGG 62.195 72.222 4.39 7.87 44.50 3.86
4500 5039 3.089874 CCCTTCGGGCCATGAGGA 61.090 66.667 16.63 0.00 35.35 3.71
4501 5040 2.455565 CCCTTCGGGCCATGAGGAT 61.456 63.158 16.63 0.00 35.35 3.24
4502 5041 1.228063 CCTTCGGGCCATGAGGATG 60.228 63.158 4.39 0.00 36.89 3.51
4509 5048 4.894201 CCATGAGGATGGCTGGAC 57.106 61.111 0.00 0.00 43.00 4.02
4510 5049 1.917495 CCATGAGGATGGCTGGACA 59.083 57.895 0.00 0.00 43.00 4.02
4511 5050 0.179026 CCATGAGGATGGCTGGACAG 60.179 60.000 0.00 0.00 43.00 3.51
4512 5051 0.835276 CATGAGGATGGCTGGACAGA 59.165 55.000 3.00 0.00 0.00 3.41
4513 5052 1.129917 ATGAGGATGGCTGGACAGAG 58.870 55.000 3.00 0.00 0.00 3.35
4514 5053 0.979709 TGAGGATGGCTGGACAGAGG 60.980 60.000 3.00 0.00 0.00 3.69
4515 5054 0.980231 GAGGATGGCTGGACAGAGGT 60.980 60.000 3.00 0.00 0.00 3.85
4516 5055 0.980231 AGGATGGCTGGACAGAGGTC 60.980 60.000 3.00 0.00 43.55 3.85
4524 5063 3.289525 GACAGAGGTCCAGTCCCG 58.710 66.667 0.00 0.00 38.12 5.14
4525 5064 2.997897 ACAGAGGTCCAGTCCCGC 60.998 66.667 0.00 0.00 0.00 6.13
4526 5065 2.997315 CAGAGGTCCAGTCCCGCA 60.997 66.667 0.00 0.00 0.00 5.69
4527 5066 2.203788 AGAGGTCCAGTCCCGCAA 60.204 61.111 0.00 0.00 0.00 4.85
4528 5067 2.047179 GAGGTCCAGTCCCGCAAC 60.047 66.667 0.00 0.00 0.00 4.17
4529 5068 3.934391 GAGGTCCAGTCCCGCAACG 62.934 68.421 0.00 0.00 0.00 4.10
4585 5124 3.727258 CCACCGGCCCTCCATCAA 61.727 66.667 0.00 0.00 0.00 2.57
4586 5125 2.597340 CACCGGCCCTCCATCAAT 59.403 61.111 0.00 0.00 0.00 2.57
4587 5126 1.825191 CACCGGCCCTCCATCAATG 60.825 63.158 0.00 0.00 0.00 2.82
4588 5127 2.908940 CCGGCCCTCCATCAATGC 60.909 66.667 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.384309 CTTGCGCATGCCATCATCTT 59.616 50.000 12.75 0.00 41.78 2.40
42 43 6.064060 AGTCCTGAAATCATCACTTGAAACA 58.936 36.000 0.00 0.00 38.03 2.83
85 86 2.530460 TCACCCAAGCCTTTATGCAT 57.470 45.000 3.79 3.79 0.00 3.96
91 92 6.252995 TCTTGTATATTTCACCCAAGCCTTT 58.747 36.000 0.00 0.00 34.07 3.11
101 102 7.320443 TGAAGTGGCATCTTGTATATTTCAC 57.680 36.000 6.99 0.00 0.00 3.18
102 103 9.625747 TTATGAAGTGGCATCTTGTATATTTCA 57.374 29.630 6.99 0.00 0.00 2.69
132 133 6.597832 ACACCTATAATAGTCTCTGGATGC 57.402 41.667 0.00 0.00 0.00 3.91
157 158 2.240160 TGGCCCAATAATAAGGTGACGT 59.760 45.455 0.00 0.00 0.00 4.34
200 204 5.749109 CGGACTCTAAAAACAGGCTATACTG 59.251 44.000 0.00 0.00 44.03 2.74
208 212 5.120208 CACACATACGGACTCTAAAAACAGG 59.880 44.000 0.00 0.00 0.00 4.00
240 244 3.064931 GTCTGAAACCAACCCTAACTCG 58.935 50.000 0.00 0.00 0.00 4.18
289 295 9.869667 AGGACTATATATATGAAGGAATAGCGT 57.130 33.333 5.44 0.00 0.00 5.07
300 307 6.709397 CGACGCCCTAAGGACTATATATATGA 59.291 42.308 5.44 0.00 33.47 2.15
309 316 1.549203 AAACGACGCCCTAAGGACTA 58.451 50.000 0.00 0.00 33.47 2.59
312 319 1.747355 CTCTAAACGACGCCCTAAGGA 59.253 52.381 0.00 0.00 33.47 3.36
336 344 6.087159 GGCGAACTTTAATCTAAACAAAACCG 59.913 38.462 0.00 0.00 0.00 4.44
375 384 6.060773 GTCGTTGAATACAAACGAAGTACAC 58.939 40.000 12.38 0.00 45.00 2.90
376 385 5.175491 GGTCGTTGAATACAAACGAAGTACA 59.825 40.000 12.38 0.00 45.00 2.90
390 400 3.244561 ACATCTTGGTCTGGTCGTTGAAT 60.245 43.478 0.00 0.00 0.00 2.57
419 429 8.865090 TGAAAGCTTTATTAATGAAAGTGGGAA 58.135 29.630 12.68 0.00 36.47 3.97
420 430 8.415950 TGAAAGCTTTATTAATGAAAGTGGGA 57.584 30.769 12.68 0.00 36.47 4.37
487 498 3.314080 CCTGCAGGTAAACGAAGAACAAA 59.686 43.478 25.53 0.00 0.00 2.83
501 512 2.428890 CGAGAGTCTATTTCCTGCAGGT 59.571 50.000 31.58 16.00 36.34 4.00
518 529 1.596934 GATCAACCTGCCCACGAGA 59.403 57.895 0.00 0.00 0.00 4.04
526 537 3.490890 GGAGCACGATCAACCTGC 58.509 61.111 0.00 0.00 0.00 4.85
546 557 3.669354 CGAGAGGCTATTGACCACC 57.331 57.895 0.00 0.00 0.00 4.61
614 625 4.401837 GGTGGAGTAGACTTTTACGATCCT 59.598 45.833 0.00 0.00 0.00 3.24
622 633 7.839680 ATCATTTTTGGTGGAGTAGACTTTT 57.160 32.000 0.00 0.00 0.00 2.27
658 669 1.843368 AGGTGTCCCGTCTTTCGATA 58.157 50.000 0.00 0.00 42.86 2.92
693 704 2.758009 ACATAACCGCAACAACTACGT 58.242 42.857 0.00 0.00 0.00 3.57
694 705 3.475242 CAACATAACCGCAACAACTACG 58.525 45.455 0.00 0.00 0.00 3.51
695 706 3.817238 CCAACATAACCGCAACAACTAC 58.183 45.455 0.00 0.00 0.00 2.73
696 707 2.226912 GCCAACATAACCGCAACAACTA 59.773 45.455 0.00 0.00 0.00 2.24
697 708 1.000717 GCCAACATAACCGCAACAACT 60.001 47.619 0.00 0.00 0.00 3.16
698 709 1.414378 GCCAACATAACCGCAACAAC 58.586 50.000 0.00 0.00 0.00 3.32
699 710 0.315568 GGCCAACATAACCGCAACAA 59.684 50.000 0.00 0.00 0.00 2.83
700 711 1.528292 GGGCCAACATAACCGCAACA 61.528 55.000 4.39 0.00 0.00 3.33
701 712 1.214325 GGGCCAACATAACCGCAAC 59.786 57.895 4.39 0.00 0.00 4.17
702 713 0.540830 AAGGGCCAACATAACCGCAA 60.541 50.000 6.18 0.00 0.00 4.85
703 714 0.540830 AAAGGGCCAACATAACCGCA 60.541 50.000 6.18 0.00 0.00 5.69
704 715 0.606096 AAAAGGGCCAACATAACCGC 59.394 50.000 6.18 0.00 0.00 5.68
721 732 4.326826 CCCTCTGACACAGCAGATAAAAA 58.673 43.478 0.00 0.00 43.43 1.94
722 733 3.869912 GCCCTCTGACACAGCAGATAAAA 60.870 47.826 0.00 0.00 43.43 1.52
723 734 2.355108 GCCCTCTGACACAGCAGATAAA 60.355 50.000 0.00 0.00 43.43 1.40
724 735 1.208052 GCCCTCTGACACAGCAGATAA 59.792 52.381 0.00 0.00 43.43 1.75
725 736 0.826715 GCCCTCTGACACAGCAGATA 59.173 55.000 0.00 0.00 43.43 1.98
726 737 1.601171 GCCCTCTGACACAGCAGAT 59.399 57.895 0.00 0.00 43.43 2.90
727 738 2.587247 GGCCCTCTGACACAGCAGA 61.587 63.158 0.00 0.00 42.31 4.26
728 739 2.046507 GGCCCTCTGACACAGCAG 60.047 66.667 0.00 0.00 37.24 4.24
729 740 2.189191 GATGGCCCTCTGACACAGCA 62.189 60.000 0.00 0.00 0.00 4.41
730 741 1.451028 GATGGCCCTCTGACACAGC 60.451 63.158 0.00 0.00 0.00 4.40
731 742 1.222936 GGATGGCCCTCTGACACAG 59.777 63.158 8.03 0.00 0.00 3.66
732 743 3.403624 GGATGGCCCTCTGACACA 58.596 61.111 8.03 0.00 0.00 3.72
742 753 4.416848 AGGATATAATATGGTGGGATGGCC 59.583 45.833 0.00 0.00 0.00 5.36
743 754 5.653255 AGGATATAATATGGTGGGATGGC 57.347 43.478 0.00 0.00 0.00 4.40
744 755 7.721399 GCTAAAGGATATAATATGGTGGGATGG 59.279 40.741 0.00 0.00 0.00 3.51
745 756 8.497745 AGCTAAAGGATATAATATGGTGGGATG 58.502 37.037 0.00 0.00 0.00 3.51
746 757 8.497745 CAGCTAAAGGATATAATATGGTGGGAT 58.502 37.037 0.00 0.00 0.00 3.85
747 758 7.461043 ACAGCTAAAGGATATAATATGGTGGGA 59.539 37.037 0.00 0.00 0.00 4.37
748 759 7.633789 ACAGCTAAAGGATATAATATGGTGGG 58.366 38.462 0.00 0.00 0.00 4.61
787 798 9.301153 CTTGCTCCGCTTTATAAATAAAACAAT 57.699 29.630 0.00 0.00 32.39 2.71
788 799 8.516234 TCTTGCTCCGCTTTATAAATAAAACAA 58.484 29.630 0.00 0.18 32.39 2.83
789 800 8.046294 TCTTGCTCCGCTTTATAAATAAAACA 57.954 30.769 0.00 0.00 32.39 2.83
790 801 7.165977 GCTCTTGCTCCGCTTTATAAATAAAAC 59.834 37.037 0.00 0.00 32.67 2.43
791 802 7.193595 GCTCTTGCTCCGCTTTATAAATAAAA 58.806 34.615 0.00 0.00 32.67 1.52
792 803 6.725246 GCTCTTGCTCCGCTTTATAAATAAA 58.275 36.000 0.00 0.00 36.03 1.40
793 804 6.300354 GCTCTTGCTCCGCTTTATAAATAA 57.700 37.500 0.00 0.00 36.03 1.40
794 805 5.924475 GCTCTTGCTCCGCTTTATAAATA 57.076 39.130 0.00 0.00 36.03 1.40
795 806 4.820284 GCTCTTGCTCCGCTTTATAAAT 57.180 40.909 0.00 0.00 36.03 1.40
809 820 0.165511 CTCTCGCAACAAGCTCTTGC 59.834 55.000 15.88 15.88 44.03 4.01
810 821 1.725706 CTCTCTCGCAACAAGCTCTTG 59.274 52.381 7.99 7.99 45.58 3.02
811 822 1.337635 CCTCTCTCGCAACAAGCTCTT 60.338 52.381 0.00 0.00 42.61 2.85
812 823 0.246086 CCTCTCTCGCAACAAGCTCT 59.754 55.000 0.00 0.00 42.61 4.09
813 824 0.244994 TCCTCTCTCGCAACAAGCTC 59.755 55.000 0.00 0.00 42.61 4.09
814 825 0.246086 CTCCTCTCTCGCAACAAGCT 59.754 55.000 0.00 0.00 42.61 3.74
815 826 0.037790 ACTCCTCTCTCGCAACAAGC 60.038 55.000 0.00 0.00 40.87 4.01
816 827 1.270826 TGACTCCTCTCTCGCAACAAG 59.729 52.381 0.00 0.00 0.00 3.16
817 828 1.328279 TGACTCCTCTCTCGCAACAA 58.672 50.000 0.00 0.00 0.00 2.83
818 829 1.270826 CTTGACTCCTCTCTCGCAACA 59.729 52.381 0.00 0.00 0.00 3.33
819 830 1.271102 ACTTGACTCCTCTCTCGCAAC 59.729 52.381 0.00 0.00 0.00 4.17
820 831 1.621992 ACTTGACTCCTCTCTCGCAA 58.378 50.000 0.00 0.00 0.00 4.85
821 832 1.542030 GAACTTGACTCCTCTCTCGCA 59.458 52.381 0.00 0.00 0.00 5.10
822 833 1.135228 GGAACTTGACTCCTCTCTCGC 60.135 57.143 0.00 0.00 0.00 5.03
823 834 1.131504 CGGAACTTGACTCCTCTCTCG 59.868 57.143 0.00 0.00 0.00 4.04
824 835 1.474879 CCGGAACTTGACTCCTCTCTC 59.525 57.143 0.00 0.00 0.00 3.20
825 836 1.075698 TCCGGAACTTGACTCCTCTCT 59.924 52.381 0.00 0.00 0.00 3.10
826 837 1.202817 GTCCGGAACTTGACTCCTCTC 59.797 57.143 5.23 0.00 0.00 3.20
827 838 1.203075 AGTCCGGAACTTGACTCCTCT 60.203 52.381 5.23 0.00 37.24 3.69
828 839 1.067495 CAGTCCGGAACTTGACTCCTC 60.067 57.143 5.23 0.00 39.76 3.71
829 840 0.969894 CAGTCCGGAACTTGACTCCT 59.030 55.000 5.23 0.00 39.76 3.69
830 841 0.966920 TCAGTCCGGAACTTGACTCC 59.033 55.000 5.23 0.00 39.76 3.85
831 842 1.887198 TCTCAGTCCGGAACTTGACTC 59.113 52.381 5.23 0.00 39.76 3.36
832 843 1.996798 TCTCAGTCCGGAACTTGACT 58.003 50.000 5.23 0.00 42.41 3.41
833 844 2.296471 TCTTCTCAGTCCGGAACTTGAC 59.704 50.000 5.23 0.00 35.45 3.18
834 845 2.558795 CTCTTCTCAGTCCGGAACTTGA 59.441 50.000 5.23 10.09 35.45 3.02
835 846 2.353208 CCTCTTCTCAGTCCGGAACTTG 60.353 54.545 5.23 5.53 35.45 3.16
836 847 1.896465 CCTCTTCTCAGTCCGGAACTT 59.104 52.381 5.23 0.00 35.45 2.66
837 848 1.551452 CCTCTTCTCAGTCCGGAACT 58.449 55.000 5.23 2.71 39.44 3.01
838 849 0.533032 CCCTCTTCTCAGTCCGGAAC 59.467 60.000 5.23 0.00 0.00 3.62
839 850 0.408309 TCCCTCTTCTCAGTCCGGAA 59.592 55.000 5.23 0.00 0.00 4.30
840 851 0.408309 TTCCCTCTTCTCAGTCCGGA 59.592 55.000 0.00 0.00 0.00 5.14
841 852 0.533032 GTTCCCTCTTCTCAGTCCGG 59.467 60.000 0.00 0.00 0.00 5.14
842 853 1.257743 TGTTCCCTCTTCTCAGTCCG 58.742 55.000 0.00 0.00 0.00 4.79
843 854 2.679349 GCATGTTCCCTCTTCTCAGTCC 60.679 54.545 0.00 0.00 0.00 3.85
844 855 2.626840 GCATGTTCCCTCTTCTCAGTC 58.373 52.381 0.00 0.00 0.00 3.51
845 856 1.280421 GGCATGTTCCCTCTTCTCAGT 59.720 52.381 0.00 0.00 0.00 3.41
846 857 1.741732 CGGCATGTTCCCTCTTCTCAG 60.742 57.143 0.00 0.00 0.00 3.35
847 858 0.250234 CGGCATGTTCCCTCTTCTCA 59.750 55.000 0.00 0.00 0.00 3.27
848 859 1.092345 GCGGCATGTTCCCTCTTCTC 61.092 60.000 0.00 0.00 0.00 2.87
849 860 1.078143 GCGGCATGTTCCCTCTTCT 60.078 57.895 0.00 0.00 0.00 2.85
850 861 2.115291 GGCGGCATGTTCCCTCTTC 61.115 63.158 3.07 0.00 0.00 2.87
851 862 2.044946 GGCGGCATGTTCCCTCTT 60.045 61.111 3.07 0.00 0.00 2.85
852 863 3.329889 TGGCGGCATGTTCCCTCT 61.330 61.111 7.97 0.00 0.00 3.69
853 864 2.825836 CTGGCGGCATGTTCCCTC 60.826 66.667 13.85 0.00 0.00 4.30
858 869 4.992740 TTGGGCTGGCGGCATGTT 62.993 61.111 21.68 0.00 44.01 2.71
859 870 4.764771 ATTGGGCTGGCGGCATGT 62.765 61.111 21.68 0.00 44.01 3.21
860 871 3.463585 AATTGGGCTGGCGGCATG 61.464 61.111 21.68 8.14 44.01 4.06
861 872 3.463585 CAATTGGGCTGGCGGCAT 61.464 61.111 21.68 1.68 44.01 4.40
862 873 4.992740 ACAATTGGGCTGGCGGCA 62.993 61.111 21.68 12.58 44.01 5.69
863 874 3.694538 AACAATTGGGCTGGCGGC 61.695 61.111 10.59 10.59 40.90 6.53
864 875 2.262292 CAACAATTGGGCTGGCGG 59.738 61.111 10.83 0.00 0.00 6.13
865 876 2.432972 GCAACAATTGGGCTGGCG 60.433 61.111 10.83 0.00 0.00 5.69
866 877 2.432972 CGCAACAATTGGGCTGGC 60.433 61.111 18.36 9.80 36.79 4.85
867 878 2.262292 CCGCAACAATTGGGCTGG 59.738 61.111 18.36 16.59 41.74 4.85
868 879 2.262292 CCCGCAACAATTGGGCTG 59.738 61.111 18.36 13.34 41.74 4.85
871 882 2.388890 TTTGGCCCGCAACAATTGGG 62.389 55.000 10.83 1.57 46.22 4.12
872 883 0.321475 ATTTGGCCCGCAACAATTGG 60.321 50.000 10.83 0.00 0.00 3.16
873 884 1.077915 GATTTGGCCCGCAACAATTG 58.922 50.000 3.24 3.24 0.00 2.32
874 885 0.975887 AGATTTGGCCCGCAACAATT 59.024 45.000 0.00 0.00 0.00 2.32
875 886 1.476488 GTAGATTTGGCCCGCAACAAT 59.524 47.619 0.00 0.00 0.00 2.71
876 887 0.885196 GTAGATTTGGCCCGCAACAA 59.115 50.000 0.00 0.00 0.00 2.83
877 888 0.963355 GGTAGATTTGGCCCGCAACA 60.963 55.000 0.00 0.00 0.00 3.33
878 889 1.663379 GGGTAGATTTGGCCCGCAAC 61.663 60.000 0.00 0.00 32.16 4.17
879 890 1.379309 GGGTAGATTTGGCCCGCAA 60.379 57.895 0.00 0.00 32.16 4.85
880 891 2.143575 TTGGGTAGATTTGGCCCGCA 62.144 55.000 0.00 0.00 45.19 5.69
881 892 1.379309 TTGGGTAGATTTGGCCCGC 60.379 57.895 0.00 0.00 45.19 6.13
882 893 0.034477 AGTTGGGTAGATTTGGCCCG 60.034 55.000 0.00 0.00 45.19 6.13
883 894 1.285078 AGAGTTGGGTAGATTTGGCCC 59.715 52.381 0.00 0.00 42.64 5.80
884 895 2.755103 CAAGAGTTGGGTAGATTTGGCC 59.245 50.000 0.00 0.00 0.00 5.36
885 896 3.191371 CACAAGAGTTGGGTAGATTTGGC 59.809 47.826 0.00 0.00 34.12 4.52
886 897 3.191371 GCACAAGAGTTGGGTAGATTTGG 59.809 47.826 0.00 0.00 36.14 3.28
887 898 3.820467 TGCACAAGAGTTGGGTAGATTTG 59.180 43.478 0.00 0.00 36.14 2.32
888 899 4.098914 TGCACAAGAGTTGGGTAGATTT 57.901 40.909 0.00 0.00 36.14 2.17
889 900 3.788227 TGCACAAGAGTTGGGTAGATT 57.212 42.857 0.00 0.00 36.14 2.40
892 903 2.417719 GTCTGCACAAGAGTTGGGTAG 58.582 52.381 0.94 0.94 46.55 3.18
893 904 1.270094 CGTCTGCACAAGAGTTGGGTA 60.270 52.381 0.00 0.00 36.14 3.69
894 905 0.532862 CGTCTGCACAAGAGTTGGGT 60.533 55.000 0.00 0.00 36.14 4.51
895 906 1.845809 GCGTCTGCACAAGAGTTGGG 61.846 60.000 0.00 0.00 42.15 4.12
896 907 1.571460 GCGTCTGCACAAGAGTTGG 59.429 57.895 0.00 0.00 42.15 3.77
897 908 1.202568 CGCGTCTGCACAAGAGTTG 59.797 57.895 0.00 0.00 42.97 3.16
898 909 0.941463 CTCGCGTCTGCACAAGAGTT 60.941 55.000 5.77 0.00 42.97 3.01
899 910 1.372251 CTCGCGTCTGCACAAGAGT 60.372 57.895 5.77 0.00 42.97 3.24
900 911 2.724708 GCTCGCGTCTGCACAAGAG 61.725 63.158 5.77 0.00 42.97 2.85
901 912 2.734723 GCTCGCGTCTGCACAAGA 60.735 61.111 5.77 0.00 42.97 3.02
902 913 3.782244 GGCTCGCGTCTGCACAAG 61.782 66.667 18.85 3.73 42.97 3.16
919 930 1.594293 CCGATGGAAATCCGACCCG 60.594 63.158 0.00 0.00 39.43 5.28
920 931 1.892391 GCCGATGGAAATCCGACCC 60.892 63.158 0.00 0.00 39.43 4.46
921 932 1.892391 GGCCGATGGAAATCCGACC 60.892 63.158 0.00 0.00 39.43 4.79
922 933 0.746563 TTGGCCGATGGAAATCCGAC 60.747 55.000 0.00 0.00 39.43 4.79
923 934 0.034960 TTTGGCCGATGGAAATCCGA 60.035 50.000 0.00 0.00 39.43 4.55
924 935 0.814457 TTTTGGCCGATGGAAATCCG 59.186 50.000 0.00 0.00 39.43 4.18
925 936 1.469079 CGTTTTGGCCGATGGAAATCC 60.469 52.381 0.00 0.00 0.00 3.01
926 937 1.201414 ACGTTTTGGCCGATGGAAATC 59.799 47.619 0.00 0.00 0.00 2.17
927 938 1.201414 GACGTTTTGGCCGATGGAAAT 59.799 47.619 0.00 0.00 0.00 2.17
928 939 0.594110 GACGTTTTGGCCGATGGAAA 59.406 50.000 0.00 0.00 0.00 3.13
929 940 0.535328 TGACGTTTTGGCCGATGGAA 60.535 50.000 0.00 0.00 0.00 3.53
930 941 0.535328 TTGACGTTTTGGCCGATGGA 60.535 50.000 0.00 0.00 0.00 3.41
931 942 0.312416 TTTGACGTTTTGGCCGATGG 59.688 50.000 0.00 0.00 0.00 3.51
932 943 1.685302 CTTTGACGTTTTGGCCGATG 58.315 50.000 0.00 0.00 0.00 3.84
933 944 0.039527 GCTTTGACGTTTTGGCCGAT 60.040 50.000 0.00 0.00 0.00 4.18
934 945 1.357334 GCTTTGACGTTTTGGCCGA 59.643 52.632 0.00 0.00 0.00 5.54
935 946 2.008697 CGCTTTGACGTTTTGGCCG 61.009 57.895 0.00 0.00 0.00 6.13
936 947 1.065109 ACGCTTTGACGTTTTGGCC 59.935 52.632 0.00 0.00 45.75 5.36
937 948 4.702020 ACGCTTTGACGTTTTGGC 57.298 50.000 0.00 0.00 45.75 4.52
944 955 0.581529 TCAGCTTTGACGCTTTGACG 59.418 50.000 0.00 0.00 38.41 4.35
945 956 2.977405 ATCAGCTTTGACGCTTTGAC 57.023 45.000 0.00 0.00 38.41 3.18
946 957 3.186409 GTGTATCAGCTTTGACGCTTTGA 59.814 43.478 0.00 0.00 38.41 2.69
947 958 3.482786 GTGTATCAGCTTTGACGCTTTG 58.517 45.455 0.00 0.00 38.41 2.77
948 959 2.157668 CGTGTATCAGCTTTGACGCTTT 59.842 45.455 0.00 0.00 38.41 3.51
949 960 1.726791 CGTGTATCAGCTTTGACGCTT 59.273 47.619 0.00 0.00 38.41 4.68
950 961 1.336887 ACGTGTATCAGCTTTGACGCT 60.337 47.619 0.00 0.00 41.90 5.07
951 962 1.068474 ACGTGTATCAGCTTTGACGC 58.932 50.000 0.00 0.00 0.00 5.19
952 963 3.788434 AAACGTGTATCAGCTTTGACG 57.212 42.857 0.00 0.00 0.00 4.35
953 964 4.389077 AGCTAAACGTGTATCAGCTTTGAC 59.611 41.667 0.00 0.00 39.49 3.18
954 965 4.566004 AGCTAAACGTGTATCAGCTTTGA 58.434 39.130 0.00 0.00 39.49 2.69
955 966 4.201724 GGAGCTAAACGTGTATCAGCTTTG 60.202 45.833 3.06 0.00 42.44 2.77
956 967 3.933332 GGAGCTAAACGTGTATCAGCTTT 59.067 43.478 3.06 0.00 42.44 3.51
957 968 3.522553 GGAGCTAAACGTGTATCAGCTT 58.477 45.455 3.06 0.00 42.44 3.74
958 969 2.479730 CGGAGCTAAACGTGTATCAGCT 60.480 50.000 0.98 0.98 44.95 4.24
961 972 2.476686 CGACGGAGCTAAACGTGTATCA 60.477 50.000 14.24 0.00 44.24 2.15
1305 1659 2.103143 CTGTAGGAGGCAGCGTCG 59.897 66.667 8.97 0.00 0.00 5.12
1404 1758 3.075005 TACTCTGTGGGGGCGAGC 61.075 66.667 0.00 0.00 0.00 5.03
1515 1869 4.742649 ACGAGGAGAGAGCCGCCA 62.743 66.667 0.00 0.00 37.17 5.69
2115 2469 3.939740 TTCTCCAGCATCTGCCTAAAT 57.060 42.857 0.00 0.00 43.38 1.40
2320 2674 1.936203 GCGCCAATGCTGAAACAACAT 60.936 47.619 0.00 0.00 34.43 2.71
2550 2904 1.701704 CACGCAAAAGCCCAGATTTC 58.298 50.000 0.00 0.00 0.00 2.17
3138 3492 1.768275 TCCAGCCTTGTGTTCTCTGAA 59.232 47.619 0.00 0.00 0.00 3.02
3552 3906 2.560981 ACAAATCCCTGCCCTAAAAACG 59.439 45.455 0.00 0.00 0.00 3.60
3920 4446 4.218417 ACATAAAGAGTTCTGCCGCAAATT 59.782 37.500 0.00 0.00 0.00 1.82
4055 4593 5.236478 CAGTAGGTAATGATTTTGTAGGCGG 59.764 44.000 0.00 0.00 0.00 6.13
4059 4597 9.877178 AAGAGTCAGTAGGTAATGATTTTGTAG 57.123 33.333 0.00 0.00 32.60 2.74
4080 4618 3.767131 GGAAGGAGCTTCTAGTCAAGAGT 59.233 47.826 0.00 0.00 40.07 3.24
4141 4679 3.353836 CAGCGACGGGTTTGGGTG 61.354 66.667 0.00 0.00 0.00 4.61
4145 4683 3.726517 CAGCCAGCGACGGGTTTG 61.727 66.667 0.00 0.00 33.45 2.93
4241 4780 3.083997 ATCCCTCGCTGTCCCACC 61.084 66.667 0.00 0.00 0.00 4.61
4243 4782 3.083349 CCATCCCTCGCTGTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
4281 4820 4.888325 CTGGGCGGGAGGGGATCT 62.888 72.222 0.00 0.00 0.00 2.75
4294 4833 3.461773 AGTCGATGGACCGCTGGG 61.462 66.667 4.00 0.00 44.54 4.45
4295 4834 2.021068 ATCAGTCGATGGACCGCTGG 62.021 60.000 4.00 0.00 44.54 4.85
4296 4835 0.596083 GATCAGTCGATGGACCGCTG 60.596 60.000 4.00 0.00 44.54 5.18
4297 4836 0.753479 AGATCAGTCGATGGACCGCT 60.753 55.000 4.00 0.00 44.54 5.52
4298 4837 0.596083 CAGATCAGTCGATGGACCGC 60.596 60.000 4.00 0.00 44.54 5.68
4299 4838 0.031314 CCAGATCAGTCGATGGACCG 59.969 60.000 4.00 0.00 44.54 4.79
4300 4839 1.067821 GACCAGATCAGTCGATGGACC 59.932 57.143 7.46 0.00 44.54 4.46
4301 4840 1.067821 GGACCAGATCAGTCGATGGAC 59.932 57.143 7.46 0.00 43.76 4.02
4302 4841 1.063642 AGGACCAGATCAGTCGATGGA 60.064 52.381 7.46 0.00 34.97 3.41
4303 4842 1.407936 AGGACCAGATCAGTCGATGG 58.592 55.000 9.13 0.00 34.97 3.51
4304 4843 2.223923 GGAAGGACCAGATCAGTCGATG 60.224 54.545 9.13 0.00 38.79 3.84
4305 4844 2.035632 GGAAGGACCAGATCAGTCGAT 58.964 52.381 9.13 2.09 38.79 3.59
4306 4845 1.475403 GGAAGGACCAGATCAGTCGA 58.525 55.000 9.13 0.00 38.79 4.20
4307 4846 0.101399 CGGAAGGACCAGATCAGTCG 59.899 60.000 9.13 0.00 38.90 4.18
4308 4847 0.179097 GCGGAAGGACCAGATCAGTC 60.179 60.000 7.24 7.24 38.90 3.51
4309 4848 1.617947 GGCGGAAGGACCAGATCAGT 61.618 60.000 0.00 0.00 38.90 3.41
4310 4849 1.144936 GGCGGAAGGACCAGATCAG 59.855 63.158 0.00 0.00 38.90 2.90
4311 4850 2.721167 CGGCGGAAGGACCAGATCA 61.721 63.158 0.00 0.00 38.90 2.92
4312 4851 2.107141 CGGCGGAAGGACCAGATC 59.893 66.667 0.00 0.00 38.90 2.75
4313 4852 4.162690 GCGGCGGAAGGACCAGAT 62.163 66.667 9.78 0.00 38.90 2.90
4321 4860 4.489771 ATTGGGAGGCGGCGGAAG 62.490 66.667 9.78 0.00 0.00 3.46
4322 4861 4.483243 GATTGGGAGGCGGCGGAA 62.483 66.667 9.78 0.00 0.00 4.30
4330 4869 2.824041 CGTTGCCGGATTGGGAGG 60.824 66.667 5.05 0.00 40.31 4.30
4364 4903 4.514577 ACGGAGCAGGATTCGCGG 62.515 66.667 6.13 0.00 0.00 6.46
4365 4904 3.257561 CACGGAGCAGGATTCGCG 61.258 66.667 0.00 0.00 0.00 5.87
4366 4905 2.892425 CCACGGAGCAGGATTCGC 60.892 66.667 0.00 0.00 0.00 4.70
4367 4906 2.202932 CCCACGGAGCAGGATTCG 60.203 66.667 0.00 0.00 0.00 3.34
4368 4907 2.190578 CCCCACGGAGCAGGATTC 59.809 66.667 0.00 0.00 0.00 2.52
4369 4908 2.285368 TCCCCACGGAGCAGGATT 60.285 61.111 0.00 0.00 32.86 3.01
4385 4924 1.817099 CATCGGCCTTGGAGCACTC 60.817 63.158 0.00 0.00 0.00 3.51
4386 4925 2.270205 CATCGGCCTTGGAGCACT 59.730 61.111 0.00 0.00 0.00 4.40
4387 4926 3.512516 GCATCGGCCTTGGAGCAC 61.513 66.667 0.00 0.00 0.00 4.40
4388 4927 3.720601 AGCATCGGCCTTGGAGCA 61.721 61.111 0.00 0.00 42.56 4.26
4389 4928 3.207669 CAGCATCGGCCTTGGAGC 61.208 66.667 0.00 0.00 42.56 4.70
4390 4929 2.515523 CCAGCATCGGCCTTGGAG 60.516 66.667 0.00 0.00 42.56 3.86
4398 4937 3.473647 TGGAGAGGCCAGCATCGG 61.474 66.667 5.01 0.00 43.33 4.18
4405 4944 4.980592 TGCAGGGTGGAGAGGCCA 62.981 66.667 5.01 0.00 46.96 5.36
4406 4945 3.415087 ATGCAGGGTGGAGAGGCC 61.415 66.667 0.00 0.00 37.10 5.19
4407 4946 2.124403 CATGCAGGGTGGAGAGGC 60.124 66.667 0.00 0.00 0.00 4.70
4408 4947 0.679002 CAACATGCAGGGTGGAGAGG 60.679 60.000 8.93 0.00 0.00 3.69
4409 4948 0.679002 CCAACATGCAGGGTGGAGAG 60.679 60.000 31.34 2.23 0.00 3.20
4410 4949 1.133181 TCCAACATGCAGGGTGGAGA 61.133 55.000 33.20 13.76 0.00 3.71
4411 4950 0.962356 GTCCAACATGCAGGGTGGAG 60.962 60.000 36.88 12.50 0.00 3.86
4412 4951 1.074775 GTCCAACATGCAGGGTGGA 59.925 57.895 33.20 33.20 0.00 4.02
4413 4952 0.827089 TTGTCCAACATGCAGGGTGG 60.827 55.000 29.36 29.36 0.00 4.61
4414 4953 0.314935 GTTGTCCAACATGCAGGGTG 59.685 55.000 10.00 10.00 40.84 4.61
4415 4954 0.827507 GGTTGTCCAACATGCAGGGT 60.828 55.000 11.89 0.00 42.85 4.34
4416 4955 0.827089 TGGTTGTCCAACATGCAGGG 60.827 55.000 11.89 0.00 42.85 4.45
4417 4956 0.314935 GTGGTTGTCCAACATGCAGG 59.685 55.000 11.89 0.00 46.15 4.85
4418 4957 0.040157 CGTGGTTGTCCAACATGCAG 60.040 55.000 11.89 0.00 46.15 4.41
4419 4958 2.028936 CGTGGTTGTCCAACATGCA 58.971 52.632 11.89 0.00 46.15 3.96
4420 4959 1.371635 GCGTGGTTGTCCAACATGC 60.372 57.895 11.89 10.44 46.15 4.06
4421 4960 1.172180 AGGCGTGGTTGTCCAACATG 61.172 55.000 11.89 0.00 46.15 3.21
4422 4961 0.467290 AAGGCGTGGTTGTCCAACAT 60.467 50.000 11.89 0.00 46.15 2.71
4423 4962 0.180642 TAAGGCGTGGTTGTCCAACA 59.819 50.000 11.89 0.00 46.15 3.33
4424 4963 1.199097 CATAAGGCGTGGTTGTCCAAC 59.801 52.381 1.49 1.49 46.15 3.77
4425 4964 1.202830 ACATAAGGCGTGGTTGTCCAA 60.203 47.619 0.00 0.00 46.15 3.53
4426 4965 0.398696 ACATAAGGCGTGGTTGTCCA 59.601 50.000 0.00 0.00 42.05 4.02
4427 4966 1.084289 GACATAAGGCGTGGTTGTCC 58.916 55.000 5.71 0.00 32.47 4.02
4428 4967 1.084289 GGACATAAGGCGTGGTTGTC 58.916 55.000 7.66 7.66 36.76 3.18
4429 4968 0.398696 TGGACATAAGGCGTGGTTGT 59.601 50.000 0.00 0.00 0.00 3.32
4430 4969 1.670811 GATGGACATAAGGCGTGGTTG 59.329 52.381 0.00 0.00 0.00 3.77
4431 4970 1.742411 CGATGGACATAAGGCGTGGTT 60.742 52.381 0.00 0.00 0.00 3.67
4432 4971 0.179084 CGATGGACATAAGGCGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
4433 4972 0.179084 ACGATGGACATAAGGCGTGG 60.179 55.000 0.00 0.00 0.00 4.94
4434 4973 2.223735 ACTACGATGGACATAAGGCGTG 60.224 50.000 0.00 0.00 33.69 5.34
4435 4974 2.029623 ACTACGATGGACATAAGGCGT 58.970 47.619 0.00 0.00 35.95 5.68
4436 4975 2.795175 ACTACGATGGACATAAGGCG 57.205 50.000 0.00 0.00 0.00 5.52
4437 4976 4.448060 GCTTAACTACGATGGACATAAGGC 59.552 45.833 0.00 0.00 0.00 4.35
4438 4977 4.989168 GGCTTAACTACGATGGACATAAGG 59.011 45.833 0.00 0.00 0.00 2.69
4439 4978 4.680110 CGGCTTAACTACGATGGACATAAG 59.320 45.833 0.00 0.00 0.00 1.73
4440 4979 4.098349 ACGGCTTAACTACGATGGACATAA 59.902 41.667 0.00 0.00 0.00 1.90
4441 4980 3.633525 ACGGCTTAACTACGATGGACATA 59.366 43.478 0.00 0.00 0.00 2.29
4442 4981 2.429610 ACGGCTTAACTACGATGGACAT 59.570 45.455 0.00 0.00 0.00 3.06
4443 4982 1.820519 ACGGCTTAACTACGATGGACA 59.179 47.619 0.00 0.00 0.00 4.02
4444 4983 2.159338 TGACGGCTTAACTACGATGGAC 60.159 50.000 0.00 0.00 0.00 4.02
4445 4984 2.093890 TGACGGCTTAACTACGATGGA 58.906 47.619 0.00 0.00 0.00 3.41
4446 4985 2.190981 GTGACGGCTTAACTACGATGG 58.809 52.381 0.00 0.00 0.00 3.51
4447 4986 2.190981 GGTGACGGCTTAACTACGATG 58.809 52.381 0.00 0.00 0.00 3.84
4448 4987 1.135721 GGGTGACGGCTTAACTACGAT 59.864 52.381 0.00 0.00 0.00 3.73
4449 4988 0.527565 GGGTGACGGCTTAACTACGA 59.472 55.000 0.00 0.00 0.00 3.43
4450 4989 0.459063 GGGGTGACGGCTTAACTACG 60.459 60.000 0.00 0.00 0.00 3.51
4451 4990 0.459063 CGGGGTGACGGCTTAACTAC 60.459 60.000 0.00 0.00 0.00 2.73
4452 4991 1.892338 CGGGGTGACGGCTTAACTA 59.108 57.895 0.00 0.00 0.00 2.24
4453 4992 2.660802 CGGGGTGACGGCTTAACT 59.339 61.111 0.00 0.00 0.00 2.24
4454 4993 3.122971 GCGGGGTGACGGCTTAAC 61.123 66.667 0.00 0.00 41.72 2.01
4455 4994 4.745751 CGCGGGGTGACGGCTTAA 62.746 66.667 0.00 0.00 42.68 1.85
4470 5009 3.758973 GAAGGGGAAGGGCTAGCGC 62.759 68.421 23.33 23.33 0.00 5.92
4471 5010 2.506472 GAAGGGGAAGGGCTAGCG 59.494 66.667 9.00 0.00 0.00 4.26
4472 5011 2.506472 CGAAGGGGAAGGGCTAGC 59.494 66.667 6.04 6.04 0.00 3.42
4484 5023 2.687418 CCATCCTCATGGCCCGAAGG 62.687 65.000 0.00 3.90 44.82 3.46
4485 5024 1.228063 CCATCCTCATGGCCCGAAG 60.228 63.158 0.00 0.00 43.55 3.79
4486 5025 2.918248 CCATCCTCATGGCCCGAA 59.082 61.111 0.00 0.00 43.55 4.30
4493 5032 0.835276 TCTGTCCAGCCATCCTCATG 59.165 55.000 0.00 0.00 0.00 3.07
4494 5033 1.129917 CTCTGTCCAGCCATCCTCAT 58.870 55.000 0.00 0.00 0.00 2.90
4495 5034 0.979709 CCTCTGTCCAGCCATCCTCA 60.980 60.000 0.00 0.00 0.00 3.86
4496 5035 0.980231 ACCTCTGTCCAGCCATCCTC 60.980 60.000 0.00 0.00 0.00 3.71
4497 5036 0.980231 GACCTCTGTCCAGCCATCCT 60.980 60.000 0.00 0.00 35.34 3.24
4498 5037 1.524482 GACCTCTGTCCAGCCATCC 59.476 63.158 0.00 0.00 35.34 3.51
4507 5046 3.007973 GCGGGACTGGACCTCTGTC 62.008 68.421 0.00 0.00 41.71 3.51
4508 5047 2.997897 GCGGGACTGGACCTCTGT 60.998 66.667 0.00 0.00 0.00 3.41
4509 5048 2.583441 TTGCGGGACTGGACCTCTG 61.583 63.158 0.00 0.00 0.00 3.35
4510 5049 2.203788 TTGCGGGACTGGACCTCT 60.204 61.111 0.00 0.00 0.00 3.69
4511 5050 2.047179 GTTGCGGGACTGGACCTC 60.047 66.667 0.00 0.00 0.00 3.85
4512 5051 4.003788 CGTTGCGGGACTGGACCT 62.004 66.667 0.00 0.00 0.00 3.85
4568 5107 3.060614 ATTGATGGAGGGCCGGTGG 62.061 63.158 1.90 0.00 36.79 4.61
4569 5108 1.825191 CATTGATGGAGGGCCGGTG 60.825 63.158 1.90 0.00 36.79 4.94
4570 5109 2.597340 CATTGATGGAGGGCCGGT 59.403 61.111 1.90 0.00 36.79 5.28
4571 5110 2.908940 GCATTGATGGAGGGCCGG 60.909 66.667 0.00 0.00 36.79 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.