Multiple sequence alignment - TraesCS2D01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G400400 chr2D 100.000 8801 0 0 1 8801 514349260 514340460 0.000000e+00 16253.0
1 TraesCS2D01G400400 chr2D 89.348 460 38 7 1 451 391294020 391294477 1.280000e-157 568.0
2 TraesCS2D01G400400 chr2D 88.675 468 43 7 1 460 93593038 93593503 5.970000e-156 562.0
3 TraesCS2D01G400400 chr2D 97.110 173 5 0 2695 2867 514346395 514346223 8.640000e-75 292.0
4 TraesCS2D01G400400 chr2D 97.110 173 5 0 2866 3038 514346566 514346394 8.640000e-75 292.0
5 TraesCS2D01G400400 chr2A 95.426 4941 111 29 2866 7743 658483510 658478622 0.000000e+00 7766.0
6 TraesCS2D01G400400 chr2A 96.913 1166 30 1 1244 2403 658484928 658483763 0.000000e+00 1949.0
7 TraesCS2D01G400400 chr2A 87.985 824 46 22 7737 8516 658478577 658477763 0.000000e+00 924.0
8 TraesCS2D01G400400 chr2A 97.647 425 10 0 2443 2867 658483762 658483338 0.000000e+00 730.0
9 TraesCS2D01G400400 chr2A 93.468 444 29 0 1 444 658494029 658493586 0.000000e+00 660.0
10 TraesCS2D01G400400 chr2A 92.857 294 9 4 661 954 658486787 658486506 4.920000e-112 416.0
11 TraesCS2D01G400400 chr2A 98.266 173 3 0 945 1117 658485537 658485365 3.990000e-78 303.0
12 TraesCS2D01G400400 chr2A 94.330 194 11 0 8606 8799 658477622 658477429 1.860000e-76 298.0
13 TraesCS2D01G400400 chr2A 93.333 90 6 0 7745 7834 79308135 79308224 5.540000e-27 134.0
14 TraesCS2D01G400400 chr2B 94.823 3612 96 27 4189 7743 606041755 606038178 0.000000e+00 5550.0
15 TraesCS2D01G400400 chr2B 95.314 1750 58 9 822 2548 606047228 606045480 0.000000e+00 2756.0
16 TraesCS2D01G400400 chr2B 97.075 1299 35 3 2905 4201 606044413 606043116 0.000000e+00 2185.0
17 TraesCS2D01G400400 chr2B 88.907 622 60 9 1 614 606053946 606053326 0.000000e+00 758.0
18 TraesCS2D01G400400 chr2B 95.441 329 14 1 2903 3230 606045267 606044939 2.820000e-144 523.0
19 TraesCS2D01G400400 chr2B 86.611 478 27 12 8068 8516 606037744 606037275 2.210000e-135 494.0
20 TraesCS2D01G400400 chr2B 90.435 345 22 6 7737 8070 606038133 606037789 2.250000e-120 444.0
21 TraesCS2D01G400400 chr2B 95.567 203 9 0 8599 8801 606037149 606036947 8.520000e-85 326.0
22 TraesCS2D01G400400 chr2B 92.614 176 10 2 664 837 606053313 606053139 5.280000e-62 250.0
23 TraesCS2D01G400400 chr2B 97.761 134 3 0 2734 2867 606044413 606044280 1.910000e-56 231.0
24 TraesCS2D01G400400 chr2B 97.059 136 4 0 2732 2867 606045267 606045132 6.870000e-56 230.0
25 TraesCS2D01G400400 chr2B 91.379 116 7 2 7365 7480 529499379 529499491 1.180000e-33 156.0
26 TraesCS2D01G400400 chr2B 91.262 103 8 1 2545 2646 606045368 606045266 1.190000e-28 139.0
27 TraesCS2D01G400400 chr2B 91.954 87 6 1 7750 7836 723392982 723392897 4.320000e-23 121.0
28 TraesCS2D01G400400 chr1D 92.308 468 28 4 1 462 34531527 34531992 0.000000e+00 658.0
29 TraesCS2D01G400400 chr3D 91.006 467 33 5 1 460 87489116 87488652 9.700000e-174 621.0
30 TraesCS2D01G400400 chr3D 90.476 84 8 0 7753 7836 157099443 157099360 2.600000e-20 111.0
31 TraesCS2D01G400400 chr4D 89.316 468 41 6 1 460 401644566 401644100 5.920000e-161 579.0
32 TraesCS2D01G400400 chr4D 87.778 90 7 1 7747 7836 322662596 322662511 1.560000e-17 102.0
33 TraesCS2D01G400400 chr5D 89.325 459 39 6 4 454 254344368 254343912 1.280000e-157 568.0
34 TraesCS2D01G400400 chr5D 90.361 83 8 0 7754 7836 420277140 420277222 9.340000e-20 110.0
35 TraesCS2D01G400400 chr1A 88.913 460 40 7 1 451 12786076 12786533 2.780000e-154 556.0
36 TraesCS2D01G400400 chr5B 78.082 365 48 18 5668 6019 505361792 505362137 1.500000e-47 202.0
37 TraesCS2D01G400400 chr6D 90.476 84 6 2 7754 7836 2490440 2490358 9.340000e-20 110.0
38 TraesCS2D01G400400 chr3B 87.500 88 9 2 7753 7838 228206272 228206185 5.620000e-17 100.0
39 TraesCS2D01G400400 chr3B 95.349 43 2 0 615 657 779116061 779116019 1.590000e-07 69.4
40 TraesCS2D01G400400 chr7D 80.000 115 20 3 449 562 70896799 70896911 2.040000e-11 82.4
41 TraesCS2D01G400400 chr7A 90.244 41 4 0 616 656 595202292 595202332 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G400400 chr2D 514340460 514349260 8800 True 5612.333333 16253 98.073333 1 8801 3 chr2D.!!$R1 8800
1 TraesCS2D01G400400 chr2A 658477429 658486787 9358 True 1769.428571 7766 94.774857 661 8799 7 chr2A.!!$R2 8138
2 TraesCS2D01G400400 chr2B 606036947 606047228 10281 True 1287.800000 5550 94.134800 822 8801 10 chr2B.!!$R2 7979
3 TraesCS2D01G400400 chr2B 606053139 606053946 807 True 504.000000 758 90.760500 1 837 2 chr2B.!!$R3 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 625 0.032130 GTTCGCGGGATCATGCTCTA 59.968 55.000 6.13 0.00 0.00 2.43 F
1357 2663 0.180406 CCCCTCCCATCGATTCGTTT 59.820 55.000 5.89 0.00 0.00 3.60 F
2279 3600 0.745845 GCACAAGCGAGGACATGGAT 60.746 55.000 0.00 0.00 0.00 3.41 F
2874 5162 0.111061 TGCTTGCTGGTCACTTGGAT 59.889 50.000 0.00 0.00 0.00 3.41 F
3363 5651 0.248866 GTGTTTTTGCACCCTGTCCG 60.249 55.000 0.00 0.00 33.53 4.79 F
4578 8274 0.319813 GAAATGTGCACCCCAACTGC 60.320 55.000 15.69 0.00 35.03 4.40 F
4823 8520 0.973632 TCCTTAGGCGCTTGAAGTCA 59.026 50.000 7.64 0.00 0.00 3.41 F
5583 9284 2.033832 GCATGGTTTTGCTGTTGAAACG 60.034 45.455 0.00 0.00 39.57 3.60 F
5733 9434 2.874701 AGACGAGCATGTATTTGCATCC 59.125 45.455 0.00 0.00 45.23 3.51 F
5789 9491 3.785887 TGGTTAGCCAGTTCCTATCCAAT 59.214 43.478 0.00 0.00 40.46 3.16 F
7559 11327 3.644884 TTAGCATAGCTCGAAGTAGGC 57.355 47.619 0.00 2.88 40.44 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 3263 0.032952 CGTTCTCCAACTCCGACCAA 59.967 55.000 0.00 0.0 0.00 3.67 R
2855 5143 0.111061 ATCCAAGTGACCAGCAAGCA 59.889 50.000 0.00 0.0 0.00 3.91 R
3344 5632 0.248866 CGGACAGGGTGCAAAAACAC 60.249 55.000 0.00 0.0 39.94 3.32 R
4334 8006 1.944024 CGGTAGTTGTGCACCAAAAGA 59.056 47.619 15.69 0.0 34.07 2.52 R
4932 8629 1.967319 AGTTAACCTGCCACACACAG 58.033 50.000 0.88 0.0 34.82 3.66 R
5453 9153 0.615331 AGCTAACAAGCAGGCTAGCA 59.385 50.000 18.24 0.0 39.39 3.49 R
6137 9841 1.111277 ACTGGGGTGCTGAAACAAAC 58.889 50.000 0.00 0.0 0.00 2.93 R
6876 10622 3.181493 GGACATCACATAGCAAAAGCAGG 60.181 47.826 0.00 0.0 0.00 4.85 R
6878 10624 3.689347 AGGACATCACATAGCAAAAGCA 58.311 40.909 0.00 0.0 0.00 3.91 R
7764 11586 1.156736 CAGCGACACTTAGTTTGGGG 58.843 55.000 0.00 0.0 0.00 4.96 R
8574 12491 1.604947 CCAGATCGCTAGTGGCATCAG 60.605 57.143 2.90 0.0 41.91 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.952935 ACTAAACAATTTGCAACGTTTTCA 57.047 29.167 19.93 0.00 33.79 2.69
25 26 6.988329 ACTAAACAATTTGCAACGTTTTCAG 58.012 32.000 19.93 15.80 33.79 3.02
26 27 6.809196 ACTAAACAATTTGCAACGTTTTCAGA 59.191 30.769 19.93 0.00 33.79 3.27
27 28 5.448926 AACAATTTGCAACGTTTTCAGAC 57.551 34.783 0.00 0.00 0.00 3.51
43 45 8.282592 CGTTTTCAGACTGATTGTTGATAGAAA 58.717 33.333 5.87 0.00 0.00 2.52
81 83 6.863275 TGCTATTGATAAAGAACACTCTCGA 58.137 36.000 0.00 0.00 0.00 4.04
86 88 8.608844 ATTGATAAAGAACACTCTCGAAAGTT 57.391 30.769 0.00 0.00 0.00 2.66
91 93 5.723672 AGAACACTCTCGAAAGTTGGATA 57.276 39.130 0.00 0.00 0.00 2.59
95 97 5.897050 ACACTCTCGAAAGTTGGATATCTC 58.103 41.667 2.05 0.00 0.00 2.75
149 154 4.096984 GGCTCATTACAAGGAATTGTCAGG 59.903 45.833 0.00 0.00 36.44 3.86
153 158 7.214467 TCATTACAAGGAATTGTCAGGTTTC 57.786 36.000 0.00 0.00 36.44 2.78
154 159 7.004086 TCATTACAAGGAATTGTCAGGTTTCT 58.996 34.615 0.00 0.00 36.44 2.52
162 167 5.535030 GGAATTGTCAGGTTTCTTGTACCTT 59.465 40.000 0.00 0.00 43.45 3.50
177 182 1.734163 ACCTTGTAATAGTGGCACGC 58.266 50.000 12.71 2.39 40.45 5.34
208 213 7.275779 ACGTGTGAAGTTGAGTGATATTGATAC 59.724 37.037 0.00 0.00 0.00 2.24
244 249 3.340034 TGGTATAAGTTCTTTGGTGGCG 58.660 45.455 0.00 0.00 0.00 5.69
247 252 1.519408 TAAGTTCTTTGGTGGCGAGC 58.481 50.000 0.00 0.00 0.00 5.03
249 254 1.959226 GTTCTTTGGTGGCGAGCGA 60.959 57.895 0.00 0.00 0.00 4.93
261 266 2.101750 TGGCGAGCGATTATCTGGTTTA 59.898 45.455 0.00 0.00 0.00 2.01
280 285 0.764369 AGGAGACACCAAGACTGCCA 60.764 55.000 0.00 0.00 42.04 4.92
285 290 2.092429 AGACACCAAGACTGCCAAGAAA 60.092 45.455 0.00 0.00 0.00 2.52
422 427 0.615850 TGGCAATACACGGTCATCCA 59.384 50.000 0.00 0.00 0.00 3.41
423 428 1.299541 GGCAATACACGGTCATCCAG 58.700 55.000 0.00 0.00 0.00 3.86
451 456 1.352882 CGTAACAACGCACGGGCATA 61.353 55.000 11.77 0.00 41.24 3.14
463 468 2.029828 CACGGGCATACTCCTAGTCATC 60.030 54.545 0.00 0.00 0.00 2.92
470 475 6.267928 GGGCATACTCCTAGTCATCTCTTAAA 59.732 42.308 0.00 0.00 0.00 1.52
471 476 7.038658 GGGCATACTCCTAGTCATCTCTTAAAT 60.039 40.741 0.00 0.00 0.00 1.40
500 509 6.708502 AGAAGCAAAACCTTCTCTCTAGTTTC 59.291 38.462 0.00 0.00 46.40 2.78
503 512 6.042666 AGCAAAACCTTCTCTCTAGTTTCTCT 59.957 38.462 0.00 0.00 31.47 3.10
506 515 8.769891 CAAAACCTTCTCTCTAGTTTCTCTTTC 58.230 37.037 0.00 0.00 31.47 2.62
509 518 6.785466 ACCTTCTCTCTAGTTTCTCTTTCCTT 59.215 38.462 0.00 0.00 0.00 3.36
518 527 8.474025 TCTAGTTTCTCTTTCCTTCATCTCATC 58.526 37.037 0.00 0.00 0.00 2.92
533 542 9.163899 CTTCATCTCATCATTTATCCTACATGG 57.836 37.037 0.00 0.00 37.10 3.66
534 543 8.211030 TCATCTCATCATTTATCCTACATGGT 57.789 34.615 0.00 0.00 37.07 3.55
539 548 8.262601 TCATCATTTATCCTACATGGTACTGT 57.737 34.615 0.00 0.00 37.07 3.55
550 559 8.910944 TCCTACATGGTACTGTTAAGATAGAAC 58.089 37.037 0.00 0.00 37.07 3.01
558 567 9.880157 GGTACTGTTAAGATAGAACCATTGTAA 57.120 33.333 0.00 0.00 0.00 2.41
562 571 9.722056 CTGTTAAGATAGAACCATTGTAAATGC 57.278 33.333 0.00 0.00 0.00 3.56
567 576 3.778265 AGAACCATTGTAAATGCCCAGT 58.222 40.909 0.00 0.00 0.00 4.00
569 578 5.518865 AGAACCATTGTAAATGCCCAGTAT 58.481 37.500 0.00 0.00 0.00 2.12
574 583 1.235724 GTAAATGCCCAGTATCCCGC 58.764 55.000 0.00 0.00 0.00 6.13
583 592 1.807742 CCAGTATCCCGCAAACGAAAA 59.192 47.619 0.00 0.00 43.93 2.29
586 595 4.095185 CCAGTATCCCGCAAACGAAAATTA 59.905 41.667 0.00 0.00 43.93 1.40
588 597 4.696402 AGTATCCCGCAAACGAAAATTACA 59.304 37.500 0.00 0.00 43.93 2.41
589 598 3.984508 TCCCGCAAACGAAAATTACAA 57.015 38.095 0.00 0.00 43.93 2.41
590 599 4.506886 TCCCGCAAACGAAAATTACAAT 57.493 36.364 0.00 0.00 43.93 2.71
600 609 4.023783 CGAAAATTACAATACCGCGGTTC 58.976 43.478 38.94 21.88 0.00 3.62
611 620 3.640000 GCGGTTCGCGGGATCATG 61.640 66.667 6.13 0.51 44.55 3.07
612 621 3.640000 CGGTTCGCGGGATCATGC 61.640 66.667 6.13 0.00 0.00 4.06
613 622 2.203070 GGTTCGCGGGATCATGCT 60.203 61.111 6.13 0.00 0.00 3.79
614 623 2.247437 GGTTCGCGGGATCATGCTC 61.247 63.158 6.13 0.00 0.00 4.26
615 624 1.227380 GTTCGCGGGATCATGCTCT 60.227 57.895 6.13 0.00 0.00 4.09
616 625 0.032130 GTTCGCGGGATCATGCTCTA 59.968 55.000 6.13 0.00 0.00 2.43
619 628 2.167662 TCGCGGGATCATGCTCTAATA 58.832 47.619 6.13 0.00 0.00 0.98
621 630 2.094494 CGCGGGATCATGCTCTAATACT 60.094 50.000 0.00 0.00 0.00 2.12
622 631 3.516615 GCGGGATCATGCTCTAATACTC 58.483 50.000 0.00 0.00 0.00 2.59
624 633 4.322349 GCGGGATCATGCTCTAATACTCTT 60.322 45.833 0.00 0.00 0.00 2.85
625 634 5.788450 CGGGATCATGCTCTAATACTCTTT 58.212 41.667 0.00 0.00 0.00 2.52
626 635 5.866633 CGGGATCATGCTCTAATACTCTTTC 59.133 44.000 0.00 0.00 0.00 2.62
627 636 6.169800 GGGATCATGCTCTAATACTCTTTCC 58.830 44.000 0.00 0.00 0.00 3.13
628 637 6.239714 GGGATCATGCTCTAATACTCTTTCCA 60.240 42.308 0.00 0.00 0.00 3.53
629 638 7.393216 GGATCATGCTCTAATACTCTTTCCAT 58.607 38.462 0.00 0.00 0.00 3.41
630 639 7.548780 GGATCATGCTCTAATACTCTTTCCATC 59.451 40.741 0.00 0.00 0.00 3.51
631 640 7.609097 TCATGCTCTAATACTCTTTCCATCT 57.391 36.000 0.00 0.00 0.00 2.90
632 641 8.027524 TCATGCTCTAATACTCTTTCCATCTT 57.972 34.615 0.00 0.00 0.00 2.40
633 642 9.147732 TCATGCTCTAATACTCTTTCCATCTTA 57.852 33.333 0.00 0.00 0.00 2.10
634 643 9.770097 CATGCTCTAATACTCTTTCCATCTTAA 57.230 33.333 0.00 0.00 0.00 1.85
742 751 5.741962 TTCATCCATCCAAGCAAAATGAA 57.258 34.783 0.00 0.00 31.29 2.57
773 782 2.603473 GGCCCAAAGGTGAACCCC 60.603 66.667 0.00 0.00 36.42 4.95
776 785 1.051556 GCCCAAAGGTGAACCCCAAA 61.052 55.000 0.00 0.00 36.42 3.28
777 786 1.728323 CCCAAAGGTGAACCCCAAAT 58.272 50.000 0.00 0.00 36.42 2.32
778 787 1.347378 CCCAAAGGTGAACCCCAAATG 59.653 52.381 0.00 0.00 36.42 2.32
979 1968 2.224185 ACCCCTGAAAACGGCAAAATTC 60.224 45.455 0.00 0.00 0.00 2.17
1135 2140 1.158434 CTCGGATCCTCGCCTACTAC 58.842 60.000 10.75 0.00 0.00 2.73
1149 2154 0.809385 TACTACGAGAGCAGCACCAC 59.191 55.000 0.00 0.00 0.00 4.16
1193 2198 2.728435 CCCGAAACCCTAGACCCCG 61.728 68.421 0.00 0.00 0.00 5.73
1357 2663 0.180406 CCCCTCCCATCGATTCGTTT 59.820 55.000 5.89 0.00 0.00 3.60
1555 2873 1.076777 CCAATCCTCCCGGCACAAT 60.077 57.895 0.00 0.00 0.00 2.71
1855 3176 1.671054 CACCACTGGTCGCCGATTT 60.671 57.895 0.00 0.00 31.02 2.17
1867 3188 1.869754 CGCCGATTTGTGATCGAGGAT 60.870 52.381 9.74 0.00 43.59 3.24
1942 3263 3.401385 AGAAGAGGATGATGGGGTGAAT 58.599 45.455 0.00 0.00 0.00 2.57
2089 3410 1.068434 GATCTGAGGCAGGAGCTGTAC 59.932 57.143 0.00 0.00 41.70 2.90
2176 3497 6.046593 CACTCAGGTACAGTTGTCAGTTTTA 58.953 40.000 0.00 0.00 0.00 1.52
2279 3600 0.745845 GCACAAGCGAGGACATGGAT 60.746 55.000 0.00 0.00 0.00 3.41
2422 3743 1.340697 TGCATCAGAAAGGCATCTGCT 60.341 47.619 13.61 3.68 45.21 4.24
2433 3754 1.336125 GGCATCTGCTAATGAAGTGGC 59.664 52.381 1.70 0.00 41.70 5.01
2445 3766 2.318908 TGAAGTGGCCTTTGCTCAAAT 58.681 42.857 3.32 0.00 37.74 2.32
2539 3860 9.979578 TTGTTTATGATCAGTTGCATTTAGTTT 57.020 25.926 0.09 0.00 0.00 2.66
2579 4015 6.895898 CATGATAACATGGCACTTATCACTC 58.104 40.000 22.49 5.40 46.95 3.51
2636 4072 4.202010 TGTCTTCTAAAACAAGCAGTTGGC 60.202 41.667 0.00 0.00 41.19 4.52
2658 4094 5.065218 GGCAGTCTTGTTCGATCATTACATT 59.935 40.000 0.00 0.00 0.00 2.71
2700 4136 9.646427 AGAAACTAACTTGATGTAGATCACTTC 57.354 33.333 1.27 0.44 38.38 3.01
2847 5135 5.793817 TGTCTTGTCATGTGCTAATGTACT 58.206 37.500 0.00 0.00 0.00 2.73
2849 5137 5.639506 GTCTTGTCATGTGCTAATGTACTGT 59.360 40.000 0.00 0.00 0.00 3.55
2850 5138 5.639082 TCTTGTCATGTGCTAATGTACTGTG 59.361 40.000 0.00 0.00 0.00 3.66
2851 5139 4.893608 TGTCATGTGCTAATGTACTGTGT 58.106 39.130 0.00 0.00 0.00 3.72
2852 5140 5.304778 TGTCATGTGCTAATGTACTGTGTT 58.695 37.500 0.00 0.00 0.00 3.32
2853 5141 6.459923 TGTCATGTGCTAATGTACTGTGTTA 58.540 36.000 0.00 0.00 0.00 2.41
2854 5142 6.589907 TGTCATGTGCTAATGTACTGTGTTAG 59.410 38.462 0.00 0.00 0.00 2.34
2855 5143 6.590292 GTCATGTGCTAATGTACTGTGTTAGT 59.410 38.462 0.00 0.00 43.56 2.24
2856 5144 6.589907 TCATGTGCTAATGTACTGTGTTAGTG 59.410 38.462 0.00 0.00 40.65 2.74
2857 5145 4.688879 TGTGCTAATGTACTGTGTTAGTGC 59.311 41.667 0.00 0.00 40.65 4.40
2858 5146 4.929808 GTGCTAATGTACTGTGTTAGTGCT 59.070 41.667 0.00 0.00 41.93 4.40
2859 5147 5.408604 GTGCTAATGTACTGTGTTAGTGCTT 59.591 40.000 0.00 0.00 41.93 3.91
2860 5148 5.408299 TGCTAATGTACTGTGTTAGTGCTTG 59.592 40.000 0.00 0.00 41.93 4.01
2861 5149 4.749245 AATGTACTGTGTTAGTGCTTGC 57.251 40.909 0.00 0.00 41.93 4.01
2862 5150 3.469008 TGTACTGTGTTAGTGCTTGCT 57.531 42.857 0.00 0.00 41.93 3.91
2863 5151 3.130633 TGTACTGTGTTAGTGCTTGCTG 58.869 45.455 0.00 0.00 41.93 4.41
2864 5152 1.597742 ACTGTGTTAGTGCTTGCTGG 58.402 50.000 0.00 0.00 38.49 4.85
2865 5153 1.134098 ACTGTGTTAGTGCTTGCTGGT 60.134 47.619 0.00 0.00 38.49 4.00
2866 5154 1.532868 CTGTGTTAGTGCTTGCTGGTC 59.467 52.381 0.00 0.00 0.00 4.02
2867 5155 1.134250 TGTGTTAGTGCTTGCTGGTCA 60.134 47.619 0.00 0.00 0.00 4.02
2868 5156 1.264288 GTGTTAGTGCTTGCTGGTCAC 59.736 52.381 0.00 0.00 0.00 3.67
2869 5157 1.140852 TGTTAGTGCTTGCTGGTCACT 59.859 47.619 0.00 0.00 42.89 3.41
2870 5158 2.222027 GTTAGTGCTTGCTGGTCACTT 58.778 47.619 0.00 0.00 40.96 3.16
2871 5159 1.882912 TAGTGCTTGCTGGTCACTTG 58.117 50.000 0.00 0.00 40.96 3.16
2872 5160 0.820891 AGTGCTTGCTGGTCACTTGG 60.821 55.000 0.00 0.00 37.78 3.61
2873 5161 0.819259 GTGCTTGCTGGTCACTTGGA 60.819 55.000 0.00 0.00 0.00 3.53
2874 5162 0.111061 TGCTTGCTGGTCACTTGGAT 59.889 50.000 0.00 0.00 0.00 3.41
2875 5163 1.350684 TGCTTGCTGGTCACTTGGATA 59.649 47.619 0.00 0.00 0.00 2.59
2876 5164 1.740025 GCTTGCTGGTCACTTGGATAC 59.260 52.381 0.00 0.00 0.00 2.24
2877 5165 2.616510 GCTTGCTGGTCACTTGGATACT 60.617 50.000 0.00 0.00 37.61 2.12
2878 5166 3.369471 GCTTGCTGGTCACTTGGATACTA 60.369 47.826 0.00 0.00 37.61 1.82
2879 5167 4.437239 CTTGCTGGTCACTTGGATACTAG 58.563 47.826 0.00 0.00 45.60 2.57
2880 5168 3.708451 TGCTGGTCACTTGGATACTAGA 58.292 45.455 0.00 0.00 42.51 2.43
2881 5169 4.290093 TGCTGGTCACTTGGATACTAGAT 58.710 43.478 0.00 0.00 42.51 1.98
2882 5170 4.342378 TGCTGGTCACTTGGATACTAGATC 59.658 45.833 0.00 0.00 42.51 2.75
2883 5171 4.342378 GCTGGTCACTTGGATACTAGATCA 59.658 45.833 0.00 0.00 42.51 2.92
2884 5172 5.737635 GCTGGTCACTTGGATACTAGATCAC 60.738 48.000 0.00 0.00 42.51 3.06
2885 5173 4.649674 TGGTCACTTGGATACTAGATCACC 59.350 45.833 0.00 0.00 42.51 4.02
2886 5174 4.261656 GGTCACTTGGATACTAGATCACCG 60.262 50.000 0.00 0.00 42.51 4.94
2887 5175 4.338682 GTCACTTGGATACTAGATCACCGT 59.661 45.833 0.00 0.00 42.51 4.83
2888 5176 4.954202 TCACTTGGATACTAGATCACCGTT 59.046 41.667 0.00 0.00 42.51 4.44
2889 5177 5.421056 TCACTTGGATACTAGATCACCGTTT 59.579 40.000 0.00 0.00 42.51 3.60
2890 5178 5.520288 CACTTGGATACTAGATCACCGTTTG 59.480 44.000 0.00 0.00 42.51 2.93
2891 5179 4.665833 TGGATACTAGATCACCGTTTGG 57.334 45.455 0.00 0.00 38.56 3.28
2892 5180 4.028131 TGGATACTAGATCACCGTTTGGT 58.972 43.478 0.00 0.00 45.21 3.67
2893 5181 4.468510 TGGATACTAGATCACCGTTTGGTT 59.531 41.667 0.00 0.00 42.95 3.67
2894 5182 5.394883 TGGATACTAGATCACCGTTTGGTTC 60.395 44.000 0.00 0.00 42.95 3.62
2895 5183 7.758075 TGGATACTAGATCACCGTTTGGTTCA 61.758 42.308 0.00 0.00 42.95 3.18
2896 5184 8.994226 TGGATACTAGATCACCGTTTGGTTCAT 61.994 40.741 0.00 0.00 42.95 2.57
2907 5195 5.778862 CCGTTTGGTTCATTGAATTTAGGT 58.221 37.500 1.78 0.00 0.00 3.08
2908 5196 6.915349 CCGTTTGGTTCATTGAATTTAGGTA 58.085 36.000 1.78 0.00 0.00 3.08
2909 5197 6.804783 CCGTTTGGTTCATTGAATTTAGGTAC 59.195 38.462 1.78 0.00 0.00 3.34
2910 5198 7.364200 CGTTTGGTTCATTGAATTTAGGTACA 58.636 34.615 1.78 0.00 0.00 2.90
2911 5199 7.537306 CGTTTGGTTCATTGAATTTAGGTACAG 59.463 37.037 1.78 0.00 0.00 2.74
2912 5200 7.461182 TTGGTTCATTGAATTTAGGTACAGG 57.539 36.000 1.78 0.00 0.00 4.00
2913 5201 5.417580 TGGTTCATTGAATTTAGGTACAGGC 59.582 40.000 1.78 0.00 0.00 4.85
2914 5202 5.417580 GGTTCATTGAATTTAGGTACAGGCA 59.582 40.000 1.78 0.00 0.00 4.75
2915 5203 6.096846 GGTTCATTGAATTTAGGTACAGGCAT 59.903 38.462 1.78 0.00 0.00 4.40
2916 5204 7.363793 GGTTCATTGAATTTAGGTACAGGCATT 60.364 37.037 1.78 0.00 0.00 3.56
2917 5205 7.333528 TCATTGAATTTAGGTACAGGCATTC 57.666 36.000 0.00 0.00 0.00 2.67
2918 5206 6.321181 TCATTGAATTTAGGTACAGGCATTCC 59.679 38.462 0.00 0.00 0.00 3.01
2919 5207 5.186256 TGAATTTAGGTACAGGCATTCCA 57.814 39.130 0.00 0.00 33.74 3.53
2920 5208 5.575157 TGAATTTAGGTACAGGCATTCCAA 58.425 37.500 0.00 0.00 33.74 3.53
2921 5209 6.194235 TGAATTTAGGTACAGGCATTCCAAT 58.806 36.000 0.00 0.00 33.74 3.16
2922 5210 6.667414 TGAATTTAGGTACAGGCATTCCAATT 59.333 34.615 0.00 0.00 33.74 2.32
2923 5211 7.180051 TGAATTTAGGTACAGGCATTCCAATTT 59.820 33.333 0.00 0.00 33.74 1.82
2924 5212 8.602472 AATTTAGGTACAGGCATTCCAATTTA 57.398 30.769 0.00 0.00 33.74 1.40
2925 5213 7.399245 TTTAGGTACAGGCATTCCAATTTAC 57.601 36.000 0.00 0.00 33.74 2.01
2926 5214 5.193099 AGGTACAGGCATTCCAATTTACT 57.807 39.130 0.00 0.00 33.74 2.24
2927 5215 4.949856 AGGTACAGGCATTCCAATTTACTG 59.050 41.667 0.00 0.00 33.74 2.74
2928 5216 4.705023 GGTACAGGCATTCCAATTTACTGT 59.295 41.667 0.00 0.00 40.41 3.55
2929 5217 5.883673 GGTACAGGCATTCCAATTTACTGTA 59.116 40.000 0.00 0.00 38.50 2.74
2930 5218 6.376018 GGTACAGGCATTCCAATTTACTGTAA 59.624 38.462 0.00 0.00 40.37 2.41
2931 5219 6.909550 ACAGGCATTCCAATTTACTGTAAA 57.090 33.333 14.73 14.73 36.09 2.01
2932 5220 6.924111 ACAGGCATTCCAATTTACTGTAAAG 58.076 36.000 17.05 5.98 36.09 1.85
2933 5221 6.071391 ACAGGCATTCCAATTTACTGTAAAGG 60.071 38.462 17.05 13.66 36.09 3.11
2934 5222 6.016555 AGGCATTCCAATTTACTGTAAAGGT 58.983 36.000 17.05 6.35 33.74 3.50
2935 5223 6.071391 AGGCATTCCAATTTACTGTAAAGGTG 60.071 38.462 17.05 15.87 33.74 4.00
2936 5224 5.576774 GCATTCCAATTTACTGTAAAGGTGC 59.423 40.000 17.05 14.94 0.00 5.01
2937 5225 6.686630 CATTCCAATTTACTGTAAAGGTGCA 58.313 36.000 17.05 3.37 0.00 4.57
2938 5226 5.699097 TCCAATTTACTGTAAAGGTGCAC 57.301 39.130 17.05 8.80 0.00 4.57
2939 5227 4.521256 TCCAATTTACTGTAAAGGTGCACC 59.479 41.667 29.22 29.22 0.00 5.01
2940 5228 4.472286 CAATTTACTGTAAAGGTGCACCG 58.528 43.478 29.68 16.82 42.08 4.94
2941 5229 3.472283 TTTACTGTAAAGGTGCACCGA 57.528 42.857 29.68 16.62 42.08 4.69
2942 5230 2.736144 TACTGTAAAGGTGCACCGAG 57.264 50.000 29.68 21.46 42.08 4.63
2943 5231 0.756903 ACTGTAAAGGTGCACCGAGT 59.243 50.000 29.68 22.05 42.08 4.18
2944 5232 1.965643 ACTGTAAAGGTGCACCGAGTA 59.034 47.619 29.68 19.31 42.08 2.59
2945 5233 2.366266 ACTGTAAAGGTGCACCGAGTAA 59.634 45.455 29.68 15.71 42.08 2.24
2946 5234 3.181463 ACTGTAAAGGTGCACCGAGTAAA 60.181 43.478 29.68 16.42 42.08 2.01
2947 5235 3.806380 TGTAAAGGTGCACCGAGTAAAA 58.194 40.909 29.68 11.07 42.08 1.52
2948 5236 4.197750 TGTAAAGGTGCACCGAGTAAAAA 58.802 39.130 29.68 9.57 42.08 1.94
2949 5237 4.822896 TGTAAAGGTGCACCGAGTAAAAAT 59.177 37.500 29.68 6.44 42.08 1.82
2950 5238 3.915437 AAGGTGCACCGAGTAAAAATG 57.085 42.857 29.68 0.00 42.08 2.32
2951 5239 2.858745 AGGTGCACCGAGTAAAAATGT 58.141 42.857 29.68 5.04 42.08 2.71
2952 5240 3.219281 AGGTGCACCGAGTAAAAATGTT 58.781 40.909 29.68 4.82 42.08 2.71
2953 5241 3.634910 AGGTGCACCGAGTAAAAATGTTT 59.365 39.130 29.68 4.33 42.08 2.83
2954 5242 4.822896 AGGTGCACCGAGTAAAAATGTTTA 59.177 37.500 29.68 0.00 42.08 2.01
2955 5243 4.913345 GGTGCACCGAGTAAAAATGTTTAC 59.087 41.667 22.49 10.12 46.43 2.01
2956 5244 7.629733 AGGTGCACCGAGTAAAAATGTTTACA 61.630 38.462 29.68 0.00 44.64 2.41
2957 5245 8.867768 AGGTGCACCGAGTAAAAATGTTTACAT 61.868 37.037 29.68 2.45 44.64 2.29
2980 5268 9.793252 ACATTGTAACTATCAGAATTTTCATGC 57.207 29.630 0.00 0.00 0.00 4.06
2981 5269 8.950961 CATTGTAACTATCAGAATTTTCATGCG 58.049 33.333 0.00 0.00 0.00 4.73
2982 5270 7.015226 TGTAACTATCAGAATTTTCATGCGG 57.985 36.000 0.00 0.00 0.00 5.69
2983 5271 6.597672 TGTAACTATCAGAATTTTCATGCGGT 59.402 34.615 0.00 0.00 0.00 5.68
2984 5272 7.766738 TGTAACTATCAGAATTTTCATGCGGTA 59.233 33.333 0.00 0.00 0.00 4.02
2985 5273 6.604735 ACTATCAGAATTTTCATGCGGTAC 57.395 37.500 0.00 0.00 0.00 3.34
2986 5274 6.112734 ACTATCAGAATTTTCATGCGGTACA 58.887 36.000 0.00 0.00 0.00 2.90
2987 5275 4.944962 TCAGAATTTTCATGCGGTACAG 57.055 40.909 0.00 0.00 0.00 2.74
2988 5276 4.574892 TCAGAATTTTCATGCGGTACAGA 58.425 39.130 0.00 0.00 0.00 3.41
2989 5277 5.000591 TCAGAATTTTCATGCGGTACAGAA 58.999 37.500 0.00 0.00 0.00 3.02
2990 5278 5.471797 TCAGAATTTTCATGCGGTACAGAAA 59.528 36.000 0.00 0.00 0.00 2.52
2991 5279 6.016693 TCAGAATTTTCATGCGGTACAGAAAA 60.017 34.615 0.00 9.48 38.53 2.29
2992 5280 6.088085 CAGAATTTTCATGCGGTACAGAAAAC 59.912 38.462 9.32 1.62 37.78 2.43
2993 5281 3.907894 TTTCATGCGGTACAGAAAACC 57.092 42.857 0.00 0.00 0.00 3.27
2994 5282 2.851263 TCATGCGGTACAGAAAACCT 57.149 45.000 0.00 0.00 34.66 3.50
2995 5283 3.134574 TCATGCGGTACAGAAAACCTT 57.865 42.857 0.00 0.00 34.66 3.50
2996 5284 2.811431 TCATGCGGTACAGAAAACCTTG 59.189 45.455 0.00 0.00 34.66 3.61
2997 5285 2.335316 TGCGGTACAGAAAACCTTGT 57.665 45.000 0.00 0.00 34.66 3.16
2998 5286 2.215196 TGCGGTACAGAAAACCTTGTC 58.785 47.619 0.00 0.00 34.66 3.18
2999 5287 2.158871 TGCGGTACAGAAAACCTTGTCT 60.159 45.455 0.00 0.00 34.66 3.41
3000 5288 2.876550 GCGGTACAGAAAACCTTGTCTT 59.123 45.455 0.00 0.00 34.66 3.01
3001 5289 3.303791 GCGGTACAGAAAACCTTGTCTTG 60.304 47.826 0.00 0.00 34.66 3.02
3002 5290 3.875134 CGGTACAGAAAACCTTGTCTTGT 59.125 43.478 0.00 0.00 34.66 3.16
3003 5291 4.025145 CGGTACAGAAAACCTTGTCTTGTC 60.025 45.833 0.00 0.00 34.66 3.18
3004 5292 4.879545 GGTACAGAAAACCTTGTCTTGTCA 59.120 41.667 0.00 0.00 33.97 3.58
3005 5293 5.531287 GGTACAGAAAACCTTGTCTTGTCAT 59.469 40.000 0.00 0.00 33.97 3.06
3006 5294 5.505173 ACAGAAAACCTTGTCTTGTCATG 57.495 39.130 0.00 0.00 0.00 3.07
3007 5295 4.949856 ACAGAAAACCTTGTCTTGTCATGT 59.050 37.500 0.00 0.00 0.00 3.21
3008 5296 5.163622 ACAGAAAACCTTGTCTTGTCATGTG 60.164 40.000 0.00 0.00 0.00 3.21
3009 5297 3.715628 AAACCTTGTCTTGTCATGTGC 57.284 42.857 0.00 0.00 0.00 4.57
3010 5298 2.645838 ACCTTGTCTTGTCATGTGCT 57.354 45.000 0.00 0.00 0.00 4.40
3011 5299 3.769739 ACCTTGTCTTGTCATGTGCTA 57.230 42.857 0.00 0.00 0.00 3.49
3012 5300 4.085357 ACCTTGTCTTGTCATGTGCTAA 57.915 40.909 0.00 0.00 0.00 3.09
3013 5301 4.655963 ACCTTGTCTTGTCATGTGCTAAT 58.344 39.130 0.00 0.00 0.00 1.73
3014 5302 4.456911 ACCTTGTCTTGTCATGTGCTAATG 59.543 41.667 0.00 0.00 0.00 1.90
3015 5303 4.456911 CCTTGTCTTGTCATGTGCTAATGT 59.543 41.667 0.00 0.00 0.00 2.71
3016 5304 5.643348 CCTTGTCTTGTCATGTGCTAATGTA 59.357 40.000 0.00 0.00 0.00 2.29
3017 5305 6.402550 CCTTGTCTTGTCATGTGCTAATGTAC 60.403 42.308 0.00 0.00 0.00 2.90
3018 5306 4.935205 TGTCTTGTCATGTGCTAATGTACC 59.065 41.667 0.00 0.00 0.00 3.34
3019 5307 4.935205 GTCTTGTCATGTGCTAATGTACCA 59.065 41.667 0.00 0.00 0.00 3.25
3061 5349 6.205464 TCTGAAAGACTGAAATGATGTTGTCC 59.795 38.462 0.00 0.00 38.67 4.02
3106 5394 6.250711 TGTGAGGTTATCAGAGTAGTACCAA 58.749 40.000 0.00 0.00 39.07 3.67
3322 5610 9.125906 CGTAATATGGTAGTACTAAAGCATGAC 57.874 37.037 16.93 11.96 35.56 3.06
3354 5642 5.947228 TGTTCAAATTTGGTGTTTTTGCA 57.053 30.435 17.90 0.00 31.88 4.08
3363 5651 0.248866 GTGTTTTTGCACCCTGTCCG 60.249 55.000 0.00 0.00 33.53 4.79
3371 5659 2.912771 TGCACCCTGTCCGTTATTATG 58.087 47.619 0.00 0.00 0.00 1.90
3520 5810 3.876914 TGAGTGCCGGTTCATTATTCATC 59.123 43.478 1.90 0.00 0.00 2.92
3674 5964 5.365619 GAACTTAAGAAGTGGTGTCCTTCA 58.634 41.667 10.09 0.00 41.91 3.02
3838 6128 5.076873 TCCTTAGGGTGGAAAAACAGAATG 58.923 41.667 0.00 0.00 46.00 2.67
4326 7998 5.875359 GCAAGTGTACTAAGGATTTGTAGCT 59.125 40.000 0.00 0.00 37.00 3.32
4327 7999 7.039882 GCAAGTGTACTAAGGATTTGTAGCTA 58.960 38.462 0.00 0.00 37.00 3.32
4328 8000 7.222999 GCAAGTGTACTAAGGATTTGTAGCTAG 59.777 40.741 0.00 0.00 37.00 3.42
4329 8001 6.807789 AGTGTACTAAGGATTTGTAGCTAGC 58.192 40.000 6.62 6.62 37.00 3.42
4330 8002 6.380274 AGTGTACTAAGGATTTGTAGCTAGCA 59.620 38.462 18.83 0.00 37.00 3.49
4331 8003 6.476053 GTGTACTAAGGATTTGTAGCTAGCAC 59.524 42.308 18.83 13.33 37.00 4.40
4332 8004 5.941555 ACTAAGGATTTGTAGCTAGCACT 57.058 39.130 18.83 0.00 30.82 4.40
4333 8005 5.665459 ACTAAGGATTTGTAGCTAGCACTG 58.335 41.667 18.83 0.00 30.82 3.66
4334 8006 4.559862 AAGGATTTGTAGCTAGCACTGT 57.440 40.909 18.83 0.00 0.00 3.55
4335 8007 4.130286 AGGATTTGTAGCTAGCACTGTC 57.870 45.455 18.83 6.88 0.00 3.51
4336 8008 3.772025 AGGATTTGTAGCTAGCACTGTCT 59.228 43.478 18.83 0.00 0.00 3.41
4337 8009 4.223923 AGGATTTGTAGCTAGCACTGTCTT 59.776 41.667 18.83 0.82 0.00 3.01
4338 8010 4.938226 GGATTTGTAGCTAGCACTGTCTTT 59.062 41.667 18.83 0.00 0.00 2.52
4339 8011 5.412904 GGATTTGTAGCTAGCACTGTCTTTT 59.587 40.000 18.83 0.00 0.00 2.27
4340 8012 5.673337 TTTGTAGCTAGCACTGTCTTTTG 57.327 39.130 18.83 0.00 0.00 2.44
4341 8013 3.664107 TGTAGCTAGCACTGTCTTTTGG 58.336 45.455 18.83 0.00 0.00 3.28
4342 8014 2.938956 AGCTAGCACTGTCTTTTGGT 57.061 45.000 18.83 0.00 0.00 3.67
4343 8015 2.498167 AGCTAGCACTGTCTTTTGGTG 58.502 47.619 18.83 0.00 0.00 4.17
4348 8020 2.937469 CACTGTCTTTTGGTGCACAA 57.063 45.000 20.43 3.78 37.28 3.33
4349 8021 2.529151 CACTGTCTTTTGGTGCACAAC 58.471 47.619 20.43 2.20 39.19 3.32
4510 8206 3.131223 TGATGTCTGCTGCTTACCTAGAC 59.869 47.826 0.00 4.93 38.52 2.59
4533 8229 9.088512 AGACGAATACTCATAACACTGAATTTC 57.911 33.333 0.00 0.00 0.00 2.17
4573 8269 2.666272 TAGTTGAAATGTGCACCCCA 57.334 45.000 15.69 3.93 0.00 4.96
4575 8271 1.412343 AGTTGAAATGTGCACCCCAAC 59.588 47.619 22.14 22.14 35.46 3.77
4576 8272 1.412343 GTTGAAATGTGCACCCCAACT 59.588 47.619 15.69 0.00 33.28 3.16
4577 8273 1.039068 TGAAATGTGCACCCCAACTG 58.961 50.000 15.69 0.00 0.00 3.16
4578 8274 0.319813 GAAATGTGCACCCCAACTGC 60.320 55.000 15.69 0.00 35.03 4.40
4594 8291 5.192927 CCAACTGCTTAAACTCCATATCCA 58.807 41.667 0.00 0.00 0.00 3.41
4618 8315 7.201848 CCATTCAGCTGCCTTTAATTATCAGAA 60.202 37.037 9.47 0.00 0.00 3.02
4637 8334 4.159135 CAGAAGCTGGCCATTTTCTTACAT 59.841 41.667 22.60 5.92 0.00 2.29
4662 8359 6.600427 TGAAGCTGCTCTTGAATTTCATATCA 59.400 34.615 1.00 0.00 34.56 2.15
4663 8360 7.284716 TGAAGCTGCTCTTGAATTTCATATCAT 59.715 33.333 1.00 0.00 34.56 2.45
4664 8361 7.204496 AGCTGCTCTTGAATTTCATATCATC 57.796 36.000 0.00 0.00 0.00 2.92
4665 8362 6.999272 AGCTGCTCTTGAATTTCATATCATCT 59.001 34.615 0.00 0.00 0.00 2.90
4823 8520 0.973632 TCCTTAGGCGCTTGAAGTCA 59.026 50.000 7.64 0.00 0.00 3.41
4921 8618 5.065914 TCTTGTTGATCTTCCCTGTTTGAG 58.934 41.667 0.00 0.00 0.00 3.02
4932 8629 4.072131 TCCCTGTTTGAGCTTACATTGAC 58.928 43.478 0.00 0.00 0.00 3.18
4941 8638 3.141398 AGCTTACATTGACTGTGTGTGG 58.859 45.455 0.00 0.00 38.92 4.17
5062 8759 5.829924 TCTTCTGGCCAATATCCTCAAAATC 59.170 40.000 7.01 0.00 0.00 2.17
5363 9062 8.588290 TGCTATCCACCAAGTATTGTTATTTT 57.412 30.769 0.00 0.00 46.99 1.82
5458 9158 9.630098 TCTTATTTGCTTTCTGATTTTTGCTAG 57.370 29.630 0.00 0.00 0.00 3.42
5563 9264 2.403252 ATAGTTGTACTGTGCAGGGC 57.597 50.000 4.11 0.00 0.00 5.19
5583 9284 2.033832 GCATGGTTTTGCTGTTGAAACG 60.034 45.455 0.00 0.00 39.57 3.60
5733 9434 2.874701 AGACGAGCATGTATTTGCATCC 59.125 45.455 0.00 0.00 45.23 3.51
5789 9491 3.785887 TGGTTAGCCAGTTCCTATCCAAT 59.214 43.478 0.00 0.00 40.46 3.16
5963 9667 6.597280 AGAGCTTCTACCTTCTTTAGCAAATG 59.403 38.462 0.00 0.00 0.00 2.32
6137 9841 9.774413 ATATAGTTCTTAACTGGTAAAATCCCG 57.226 33.333 2.59 0.00 42.84 5.14
6438 10142 4.910195 TGCTGTTTCTGACCATATGACTT 58.090 39.130 3.65 0.00 0.00 3.01
6626 10330 4.975631 TGTTCGGATTCTTTGGTCCTTAA 58.024 39.130 0.00 0.00 32.19 1.85
6910 10656 6.261826 GCTATGTGATGTCCTCTGCTAAAAAT 59.738 38.462 0.00 0.00 0.00 1.82
6957 10703 3.751698 GTCCGCTTAGTCTGTTTCCATTT 59.248 43.478 0.00 0.00 0.00 2.32
7345 11113 8.423349 TGGGATAATTATTTGCTTCATTCAAGG 58.577 33.333 0.00 0.00 31.94 3.61
7559 11327 3.644884 TTAGCATAGCTCGAAGTAGGC 57.355 47.619 0.00 2.88 40.44 3.93
7687 11457 8.097038 AGAATAGCTGAAGTTGAAACTGTATGA 58.903 33.333 0.00 0.00 39.66 2.15
7739 11509 4.143030 CGTCCACACTTGAGATTTAAGCTG 60.143 45.833 0.00 0.00 0.00 4.24
7764 11586 3.131400 CCTCTGTTAAGTACTCCCTCTGC 59.869 52.174 0.00 0.00 0.00 4.26
7771 11593 0.035343 GTACTCCCTCTGCCCCAAAC 60.035 60.000 0.00 0.00 0.00 2.93
7792 11614 7.277981 CCAAACTAAGTGTCGCTGATTTAGTAT 59.722 37.037 0.00 0.00 34.46 2.12
7884 11716 6.535150 CGGAATTTCTGCTGAATTAGTCACTA 59.465 38.462 6.88 0.00 31.13 2.74
7939 11771 3.549794 ACTCAGCCCTCAAATTATCAGC 58.450 45.455 0.00 0.00 0.00 4.26
7942 11774 3.117398 TCAGCCCTCAAATTATCAGCCAT 60.117 43.478 0.00 0.00 0.00 4.40
8032 11864 0.812014 TTGAACAACTTCGCTCCGCA 60.812 50.000 0.00 0.00 0.00 5.69
8172 12053 6.406692 AGTATCCGATAGCTAATGTGTTGT 57.593 37.500 0.00 0.00 0.00 3.32
8399 12288 1.984570 CTCGCTCCTGACTCCCCAA 60.985 63.158 0.00 0.00 0.00 4.12
8430 12343 1.603326 CATTTTGCCTGGTTGTTTGCC 59.397 47.619 0.00 0.00 0.00 4.52
8503 12420 6.049790 GGAACTAAGCGATCTTTATCCTGTT 58.950 40.000 0.00 0.00 33.85 3.16
8603 12595 2.567615 ACTAGCGATCTGGTTTGGACTT 59.432 45.455 0.00 0.00 28.88 3.01
8604 12596 2.100605 AGCGATCTGGTTTGGACTTC 57.899 50.000 0.00 0.00 0.00 3.01
8609 12601 3.756117 GATCTGGTTTGGACTTCACCTT 58.244 45.455 0.00 0.00 0.00 3.50
8640 12632 4.737353 TTGCGCATGATTCTTAGCATAG 57.263 40.909 12.75 0.00 34.44 2.23
8652 12644 3.135348 TCTTAGCATAGCTCCAAGCATGT 59.865 43.478 0.00 0.00 45.56 3.21
8688 12680 4.183686 CATTCTGGGGCAAGCGCG 62.184 66.667 0.00 0.00 39.92 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.351414 TCTATCAACAATCAGTCTGAAAACG 57.649 36.000 6.64 0.00 0.00 3.60
23 24 8.733458 TCCATTTTTCTATCAACAATCAGTCTG 58.267 33.333 0.00 0.00 0.00 3.51
24 25 8.868522 TCCATTTTTCTATCAACAATCAGTCT 57.131 30.769 0.00 0.00 0.00 3.24
26 27 9.865321 CATTCCATTTTTCTATCAACAATCAGT 57.135 29.630 0.00 0.00 0.00 3.41
27 28 9.309516 CCATTCCATTTTTCTATCAACAATCAG 57.690 33.333 0.00 0.00 0.00 2.90
43 45 6.989155 ATCAATAGCATGACCATTCCATTT 57.011 33.333 0.00 0.00 30.82 2.32
149 154 6.428771 TGCCACTATTACAAGGTACAAGAAAC 59.571 38.462 0.00 0.00 0.00 2.78
153 158 4.328983 CGTGCCACTATTACAAGGTACAAG 59.671 45.833 0.00 0.00 36.68 3.16
154 159 4.247258 CGTGCCACTATTACAAGGTACAA 58.753 43.478 0.00 0.00 36.68 2.41
162 167 1.208293 TCCATGCGTGCCACTATTACA 59.792 47.619 0.00 0.00 0.00 2.41
177 182 2.221749 CACTCAACTTCACACGTCCATG 59.778 50.000 0.00 0.00 0.00 3.66
221 226 4.398044 CGCCACCAAAGAACTTATACCATT 59.602 41.667 0.00 0.00 0.00 3.16
230 235 1.961277 CGCTCGCCACCAAAGAACT 60.961 57.895 0.00 0.00 0.00 3.01
244 249 5.221263 TGTCTCCTAAACCAGATAATCGCTC 60.221 44.000 0.00 0.00 0.00 5.03
247 252 5.163447 TGGTGTCTCCTAAACCAGATAATCG 60.163 44.000 0.00 0.00 39.05 3.34
249 254 6.443849 TCTTGGTGTCTCCTAAACCAGATAAT 59.556 38.462 0.00 0.00 44.48 1.28
261 266 0.764369 TGGCAGTCTTGGTGTCTCCT 60.764 55.000 0.00 0.00 37.07 3.69
280 285 6.831976 TCAAACTCTCTTAGGCTTCTTTCTT 58.168 36.000 0.00 0.00 0.00 2.52
285 290 7.001073 ACAAATTCAAACTCTCTTAGGCTTCT 58.999 34.615 0.00 0.00 0.00 2.85
392 397 9.121658 TGACCGTGTATTGCCATAAAATAATAA 57.878 29.630 0.00 0.00 0.00 1.40
396 401 6.205853 GGATGACCGTGTATTGCCATAAAATA 59.794 38.462 0.00 0.00 0.00 1.40
401 406 2.436173 TGGATGACCGTGTATTGCCATA 59.564 45.455 0.00 0.00 39.42 2.74
405 410 0.657840 GCTGGATGACCGTGTATTGC 59.342 55.000 0.00 0.00 39.42 3.56
413 418 1.508088 GGCAAAAGCTGGATGACCG 59.492 57.895 0.00 0.00 39.42 4.79
422 427 0.309612 CGTTGTTACGGGCAAAAGCT 59.690 50.000 0.00 0.00 43.94 3.74
423 428 2.791092 CGTTGTTACGGGCAAAAGC 58.209 52.632 0.00 0.00 43.94 3.51
434 439 0.037139 AGTATGCCCGTGCGTTGTTA 60.037 50.000 0.00 0.00 41.78 2.41
436 441 1.740296 GAGTATGCCCGTGCGTTGT 60.740 57.895 0.00 0.00 41.78 3.32
437 442 2.461110 GGAGTATGCCCGTGCGTTG 61.461 63.158 0.00 0.00 41.78 4.10
440 445 1.007271 CTAGGAGTATGCCCGTGCG 60.007 63.158 0.00 0.00 41.78 5.34
470 475 9.225436 CTAGAGAGAAGGTTTTGCTTCTTTTAT 57.775 33.333 0.00 0.00 39.70 1.40
471 476 8.211629 ACTAGAGAGAAGGTTTTGCTTCTTTTA 58.788 33.333 0.00 0.00 39.70 1.52
474 479 6.181206 ACTAGAGAGAAGGTTTTGCTTCTT 57.819 37.500 0.00 0.00 39.70 2.52
476 481 6.708502 AGAAACTAGAGAGAAGGTTTTGCTTC 59.291 38.462 0.00 0.00 32.95 3.86
477 482 6.596621 AGAAACTAGAGAGAAGGTTTTGCTT 58.403 36.000 0.00 0.00 32.95 3.91
484 493 6.319715 AGGAAAGAGAAACTAGAGAGAAGGT 58.680 40.000 0.00 0.00 0.00 3.50
489 498 8.066612 AGATGAAGGAAAGAGAAACTAGAGAG 57.933 38.462 0.00 0.00 0.00 3.20
500 509 9.001542 GGATAAATGATGAGATGAAGGAAAGAG 57.998 37.037 0.00 0.00 0.00 2.85
503 512 9.784531 GTAGGATAAATGATGAGATGAAGGAAA 57.215 33.333 0.00 0.00 0.00 3.13
506 515 9.163899 CATGTAGGATAAATGATGAGATGAAGG 57.836 37.037 0.00 0.00 38.63 3.46
509 518 8.211030 ACCATGTAGGATAAATGATGAGATGA 57.789 34.615 0.00 0.00 38.63 2.92
539 548 7.836685 TGGGCATTTACAATGGTTCTATCTTAA 59.163 33.333 0.00 0.00 0.00 1.85
550 559 3.573967 GGGATACTGGGCATTTACAATGG 59.426 47.826 0.00 0.00 0.00 3.16
558 567 0.033601 TTTGCGGGATACTGGGCATT 60.034 50.000 0.00 0.00 45.89 3.56
559 568 0.751643 GTTTGCGGGATACTGGGCAT 60.752 55.000 0.00 0.00 45.89 4.40
562 571 0.391927 TTCGTTTGCGGGATACTGGG 60.392 55.000 0.00 0.00 45.89 4.45
567 576 5.624344 TTGTAATTTTCGTTTGCGGGATA 57.376 34.783 0.00 0.00 38.89 2.59
569 578 3.984508 TTGTAATTTTCGTTTGCGGGA 57.015 38.095 0.00 0.00 38.89 5.14
574 583 4.261118 CCGCGGTATTGTAATTTTCGTTTG 59.739 41.667 19.50 0.00 0.00 2.93
583 592 0.932399 GCGAACCGCGGTATTGTAAT 59.068 50.000 34.44 14.81 44.55 1.89
600 609 2.094494 AGTATTAGAGCATGATCCCGCG 60.094 50.000 7.49 0.00 0.00 6.46
638 647 8.934023 TTCCCTTATACAAAGTTGAGTCATTT 57.066 30.769 0.00 0.00 0.00 2.32
640 649 9.614792 GTATTCCCTTATACAAAGTTGAGTCAT 57.385 33.333 0.00 0.00 32.44 3.06
641 650 7.762615 CGTATTCCCTTATACAAAGTTGAGTCA 59.237 37.037 0.00 0.00 31.80 3.41
642 651 7.763071 ACGTATTCCCTTATACAAAGTTGAGTC 59.237 37.037 0.00 0.00 31.80 3.36
643 652 7.618137 ACGTATTCCCTTATACAAAGTTGAGT 58.382 34.615 0.00 0.00 31.80 3.41
644 653 8.488651 AACGTATTCCCTTATACAAAGTTGAG 57.511 34.615 0.00 0.00 31.80 3.02
645 654 8.851541 AAACGTATTCCCTTATACAAAGTTGA 57.148 30.769 0.00 0.00 31.80 3.18
646 655 9.902196 AAAAACGTATTCCCTTATACAAAGTTG 57.098 29.630 0.00 0.00 31.80 3.16
696 705 4.000988 CACCCAAAATACTAGACTTGCGT 58.999 43.478 0.00 0.00 0.00 5.24
708 717 5.775268 TGGATGGATGAATCACCCAAAATA 58.225 37.500 0.00 0.00 33.15 1.40
742 751 1.228154 GGGCCAAGTTTCGTCCTGT 60.228 57.895 4.39 0.00 0.00 4.00
788 798 1.470805 GGGTTCACCTTTTGTGTGTGC 60.471 52.381 0.00 0.00 45.61 4.57
979 1968 0.818296 AGGAGGAGGACGATTCGTTG 59.182 55.000 13.72 0.00 41.37 4.10
1114 2110 2.115480 TAGGCGAGGATCCGAGGG 59.885 66.667 5.98 0.00 0.00 4.30
1135 2140 2.740055 GGTGTGGTGCTGCTCTCG 60.740 66.667 0.00 0.00 0.00 4.04
1237 2242 3.933624 GTCGTCGGAGATCTCCTCGAAG 61.934 59.091 36.69 29.81 46.29 3.79
1357 2663 3.766691 GCCTTGGGGTCGTAGCGA 61.767 66.667 0.00 0.00 34.45 4.93
1555 2873 1.559065 CGGCCTTGGAGGGTTTAGGA 61.559 60.000 0.00 0.00 35.37 2.94
1855 3176 3.638160 TGTCATCATCATCCTCGATCACA 59.362 43.478 0.00 0.00 0.00 3.58
1867 3188 2.158856 GGAGCCATCACTGTCATCATCA 60.159 50.000 0.00 0.00 0.00 3.07
1942 3263 0.032952 CGTTCTCCAACTCCGACCAA 59.967 55.000 0.00 0.00 0.00 3.67
2089 3410 1.135972 CAATTCCGTGCTGAAGAACCG 60.136 52.381 0.00 0.00 0.00 4.44
2176 3497 6.639632 AGTTCAAGACATGTAAACTGCATT 57.360 33.333 0.00 0.00 0.00 3.56
2279 3600 4.988744 TTCAGCACCGGGTTGAAA 57.011 50.000 16.05 0.00 42.74 2.69
2408 3729 4.639310 CACTTCATTAGCAGATGCCTTTCT 59.361 41.667 0.14 0.00 43.38 2.52
2422 3743 3.153369 TGAGCAAAGGCCACTTCATTA 57.847 42.857 5.01 0.00 42.56 1.90
2433 3754 7.967890 AAGGAAACAATAATTTGAGCAAAGG 57.032 32.000 1.92 0.00 36.64 3.11
2573 4009 6.244552 TGAAAGAATAGGATGCTGAGTGAT 57.755 37.500 0.00 0.00 0.00 3.06
2579 4015 6.956202 AAGGATTGAAAGAATAGGATGCTG 57.044 37.500 0.00 0.00 0.00 4.41
2636 4072 7.521529 ACAAATGTAATGATCGAACAAGACTG 58.478 34.615 0.00 0.00 0.00 3.51
2673 4109 8.994429 AGTGATCTACATCAAGTTAGTTTCTG 57.006 34.615 0.00 0.00 40.90 3.02
2700 4136 4.303086 ACCAAACGGTGATCTAGTATCG 57.697 45.455 0.00 0.00 34.62 2.92
2847 5135 1.134250 TGACCAGCAAGCACTAACACA 60.134 47.619 0.00 0.00 0.00 3.72
2849 5137 1.140852 AGTGACCAGCAAGCACTAACA 59.859 47.619 0.00 0.00 40.79 2.41
2850 5138 1.884235 AGTGACCAGCAAGCACTAAC 58.116 50.000 0.00 0.00 40.79 2.34
2851 5139 2.221169 CAAGTGACCAGCAAGCACTAA 58.779 47.619 0.00 0.00 41.65 2.24
2852 5140 1.543208 CCAAGTGACCAGCAAGCACTA 60.543 52.381 0.00 0.00 41.65 2.74
2853 5141 0.820891 CCAAGTGACCAGCAAGCACT 60.821 55.000 0.00 0.00 44.15 4.40
2854 5142 0.819259 TCCAAGTGACCAGCAAGCAC 60.819 55.000 0.00 0.00 0.00 4.40
2855 5143 0.111061 ATCCAAGTGACCAGCAAGCA 59.889 50.000 0.00 0.00 0.00 3.91
2856 5144 1.740025 GTATCCAAGTGACCAGCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
2857 5145 3.340814 AGTATCCAAGTGACCAGCAAG 57.659 47.619 0.00 0.00 0.00 4.01
2858 5146 4.093743 TCTAGTATCCAAGTGACCAGCAA 58.906 43.478 0.00 0.00 0.00 3.91
2859 5147 3.708451 TCTAGTATCCAAGTGACCAGCA 58.292 45.455 0.00 0.00 0.00 4.41
2860 5148 4.342378 TGATCTAGTATCCAAGTGACCAGC 59.658 45.833 0.00 0.00 0.00 4.85
2861 5149 5.221342 GGTGATCTAGTATCCAAGTGACCAG 60.221 48.000 0.00 0.00 0.00 4.00
2862 5150 4.649674 GGTGATCTAGTATCCAAGTGACCA 59.350 45.833 0.00 0.00 0.00 4.02
2863 5151 4.261656 CGGTGATCTAGTATCCAAGTGACC 60.262 50.000 0.00 0.00 0.00 4.02
2864 5152 4.338682 ACGGTGATCTAGTATCCAAGTGAC 59.661 45.833 0.00 0.00 0.00 3.67
2865 5153 4.533815 ACGGTGATCTAGTATCCAAGTGA 58.466 43.478 0.00 0.00 0.00 3.41
2866 5154 4.920640 ACGGTGATCTAGTATCCAAGTG 57.079 45.455 0.00 0.00 0.00 3.16
2867 5155 5.395324 CCAAACGGTGATCTAGTATCCAAGT 60.395 44.000 0.00 0.00 0.00 3.16
2868 5156 5.050490 CCAAACGGTGATCTAGTATCCAAG 58.950 45.833 0.00 0.00 0.00 3.61
2869 5157 4.468510 ACCAAACGGTGATCTAGTATCCAA 59.531 41.667 0.00 0.00 34.62 3.53
2870 5158 4.028131 ACCAAACGGTGATCTAGTATCCA 58.972 43.478 0.00 0.00 34.62 3.41
2871 5159 4.667519 ACCAAACGGTGATCTAGTATCC 57.332 45.455 0.00 0.00 34.62 2.59
2872 5160 5.657474 TGAACCAAACGGTGATCTAGTATC 58.343 41.667 0.00 0.00 36.67 2.24
2873 5161 5.670792 TGAACCAAACGGTGATCTAGTAT 57.329 39.130 0.00 0.00 36.67 2.12
2874 5162 5.670792 ATGAACCAAACGGTGATCTAGTA 57.329 39.130 0.00 0.00 36.67 1.82
2875 5163 4.553330 ATGAACCAAACGGTGATCTAGT 57.447 40.909 0.00 0.00 36.67 2.57
2876 5164 4.935205 TCAATGAACCAAACGGTGATCTAG 59.065 41.667 0.00 0.00 36.67 2.43
2877 5165 4.900684 TCAATGAACCAAACGGTGATCTA 58.099 39.130 0.00 0.00 36.67 1.98
2878 5166 3.750371 TCAATGAACCAAACGGTGATCT 58.250 40.909 0.00 0.00 36.67 2.75
2879 5167 4.497473 TTCAATGAACCAAACGGTGATC 57.503 40.909 0.00 0.00 36.67 2.92
2880 5168 5.467035 AATTCAATGAACCAAACGGTGAT 57.533 34.783 0.00 0.00 36.67 3.06
2881 5169 4.927978 AATTCAATGAACCAAACGGTGA 57.072 36.364 0.00 0.00 36.67 4.02
2882 5170 5.633182 CCTAAATTCAATGAACCAAACGGTG 59.367 40.000 0.00 0.00 36.67 4.94
2883 5171 5.303333 ACCTAAATTCAATGAACCAAACGGT 59.697 36.000 0.00 0.00 38.95 4.83
2884 5172 5.778862 ACCTAAATTCAATGAACCAAACGG 58.221 37.500 0.00 0.00 0.00 4.44
2885 5173 7.364200 TGTACCTAAATTCAATGAACCAAACG 58.636 34.615 0.00 0.00 0.00 3.60
2886 5174 7.812669 CCTGTACCTAAATTCAATGAACCAAAC 59.187 37.037 0.00 0.00 0.00 2.93
2887 5175 7.524698 GCCTGTACCTAAATTCAATGAACCAAA 60.525 37.037 0.00 0.00 0.00 3.28
2888 5176 6.071616 GCCTGTACCTAAATTCAATGAACCAA 60.072 38.462 0.00 0.00 0.00 3.67
2889 5177 5.417580 GCCTGTACCTAAATTCAATGAACCA 59.582 40.000 0.00 0.00 0.00 3.67
2890 5178 5.417580 TGCCTGTACCTAAATTCAATGAACC 59.582 40.000 0.00 0.00 0.00 3.62
2891 5179 6.509418 TGCCTGTACCTAAATTCAATGAAC 57.491 37.500 0.00 0.00 0.00 3.18
2892 5180 7.147915 GGAATGCCTGTACCTAAATTCAATGAA 60.148 37.037 0.00 0.00 0.00 2.57
2893 5181 6.321181 GGAATGCCTGTACCTAAATTCAATGA 59.679 38.462 9.35 0.00 0.00 2.57
2894 5182 6.096705 TGGAATGCCTGTACCTAAATTCAATG 59.903 38.462 0.00 0.00 34.31 2.82
2895 5183 6.194235 TGGAATGCCTGTACCTAAATTCAAT 58.806 36.000 0.00 0.00 34.31 2.57
2896 5184 5.575157 TGGAATGCCTGTACCTAAATTCAA 58.425 37.500 0.00 0.00 34.31 2.69
2897 5185 5.186256 TGGAATGCCTGTACCTAAATTCA 57.814 39.130 0.00 0.00 34.31 2.57
2898 5186 6.715347 ATTGGAATGCCTGTACCTAAATTC 57.285 37.500 0.00 0.00 34.31 2.17
2899 5187 7.494922 AAATTGGAATGCCTGTACCTAAATT 57.505 32.000 0.00 0.00 34.31 1.82
2900 5188 7.839200 AGTAAATTGGAATGCCTGTACCTAAAT 59.161 33.333 0.00 0.00 34.31 1.40
2901 5189 7.122055 CAGTAAATTGGAATGCCTGTACCTAAA 59.878 37.037 0.00 0.00 34.31 1.85
2902 5190 6.601613 CAGTAAATTGGAATGCCTGTACCTAA 59.398 38.462 0.00 0.00 34.31 2.69
2903 5191 6.119536 CAGTAAATTGGAATGCCTGTACCTA 58.880 40.000 0.00 0.00 34.31 3.08
2904 5192 4.949856 CAGTAAATTGGAATGCCTGTACCT 59.050 41.667 0.00 0.00 34.31 3.08
2905 5193 4.705023 ACAGTAAATTGGAATGCCTGTACC 59.295 41.667 0.00 0.00 34.31 3.34
2906 5194 5.897377 ACAGTAAATTGGAATGCCTGTAC 57.103 39.130 0.00 0.00 34.31 2.90
2907 5195 7.122055 CCTTTACAGTAAATTGGAATGCCTGTA 59.878 37.037 6.20 0.00 33.97 2.74
2908 5196 6.071391 CCTTTACAGTAAATTGGAATGCCTGT 60.071 38.462 6.20 0.00 35.92 4.00
2909 5197 6.071391 ACCTTTACAGTAAATTGGAATGCCTG 60.071 38.462 15.21 0.00 34.31 4.85
2910 5198 6.016555 ACCTTTACAGTAAATTGGAATGCCT 58.983 36.000 15.21 0.00 34.31 4.75
2911 5199 6.099341 CACCTTTACAGTAAATTGGAATGCC 58.901 40.000 15.21 0.00 0.00 4.40
2912 5200 5.576774 GCACCTTTACAGTAAATTGGAATGC 59.423 40.000 15.21 12.07 0.00 3.56
2913 5201 6.586082 GTGCACCTTTACAGTAAATTGGAATG 59.414 38.462 15.21 7.54 0.00 2.67
2914 5202 6.295067 GGTGCACCTTTACAGTAAATTGGAAT 60.295 38.462 29.12 0.00 0.00 3.01
2915 5203 5.010213 GGTGCACCTTTACAGTAAATTGGAA 59.990 40.000 29.12 0.00 0.00 3.53
2916 5204 4.521256 GGTGCACCTTTACAGTAAATTGGA 59.479 41.667 29.12 10.24 0.00 3.53
2917 5205 4.614993 CGGTGCACCTTTACAGTAAATTGG 60.615 45.833 32.28 8.05 0.00 3.16
2918 5206 4.214545 TCGGTGCACCTTTACAGTAAATTG 59.785 41.667 32.28 12.36 0.00 2.32
2919 5207 4.391155 TCGGTGCACCTTTACAGTAAATT 58.609 39.130 32.28 0.00 0.00 1.82
2920 5208 4.000988 CTCGGTGCACCTTTACAGTAAAT 58.999 43.478 32.28 0.00 0.00 1.40
2921 5209 3.181463 ACTCGGTGCACCTTTACAGTAAA 60.181 43.478 32.28 5.61 0.00 2.01
2922 5210 2.366266 ACTCGGTGCACCTTTACAGTAA 59.634 45.455 32.28 6.49 0.00 2.24
2923 5211 1.965643 ACTCGGTGCACCTTTACAGTA 59.034 47.619 32.28 7.46 0.00 2.74
2924 5212 0.756903 ACTCGGTGCACCTTTACAGT 59.243 50.000 32.28 21.18 0.00 3.55
2925 5213 2.736144 TACTCGGTGCACCTTTACAG 57.264 50.000 32.28 20.59 0.00 2.74
2926 5214 3.472283 TTTACTCGGTGCACCTTTACA 57.528 42.857 32.28 11.79 0.00 2.41
2927 5215 4.816786 TTTTTACTCGGTGCACCTTTAC 57.183 40.909 32.28 7.16 0.00 2.01
2928 5216 4.822896 ACATTTTTACTCGGTGCACCTTTA 59.177 37.500 32.28 17.53 0.00 1.85
2929 5217 3.634910 ACATTTTTACTCGGTGCACCTTT 59.365 39.130 32.28 18.55 0.00 3.11
2930 5218 3.219281 ACATTTTTACTCGGTGCACCTT 58.781 40.909 32.28 18.90 0.00 3.50
2931 5219 2.858745 ACATTTTTACTCGGTGCACCT 58.141 42.857 32.28 17.44 0.00 4.00
2932 5220 3.636282 AACATTTTTACTCGGTGCACC 57.364 42.857 26.78 26.78 0.00 5.01
2933 5221 5.512473 TGTAAACATTTTTACTCGGTGCAC 58.488 37.500 8.80 8.80 45.15 4.57
2934 5222 5.752892 TGTAAACATTTTTACTCGGTGCA 57.247 34.783 14.00 0.00 45.15 4.57
2935 5223 6.639279 ACAATGTAAACATTTTTACTCGGTGC 59.361 34.615 14.00 0.00 45.15 5.01
2936 5224 9.666626 TTACAATGTAAACATTTTTACTCGGTG 57.333 29.630 14.00 9.49 45.15 4.94
2937 5225 9.667989 GTTACAATGTAAACATTTTTACTCGGT 57.332 29.630 7.48 11.18 45.15 4.69
2938 5226 9.887406 AGTTACAATGTAAACATTTTTACTCGG 57.113 29.630 7.48 7.02 45.15 4.63
2954 5242 9.793252 GCATGAAAATTCTGATAGTTACAATGT 57.207 29.630 0.00 0.00 0.00 2.71
2955 5243 8.950961 CGCATGAAAATTCTGATAGTTACAATG 58.049 33.333 0.00 0.00 0.00 2.82
2956 5244 8.131100 CCGCATGAAAATTCTGATAGTTACAAT 58.869 33.333 0.00 0.00 0.00 2.71
2957 5245 7.120579 ACCGCATGAAAATTCTGATAGTTACAA 59.879 33.333 0.00 0.00 0.00 2.41
2958 5246 6.597672 ACCGCATGAAAATTCTGATAGTTACA 59.402 34.615 0.00 0.00 0.00 2.41
2959 5247 7.016361 ACCGCATGAAAATTCTGATAGTTAC 57.984 36.000 0.00 0.00 0.00 2.50
2960 5248 7.766738 TGTACCGCATGAAAATTCTGATAGTTA 59.233 33.333 0.00 0.00 0.00 2.24
2961 5249 6.597672 TGTACCGCATGAAAATTCTGATAGTT 59.402 34.615 0.00 0.00 0.00 2.24
2962 5250 6.112734 TGTACCGCATGAAAATTCTGATAGT 58.887 36.000 0.00 0.00 0.00 2.12
2963 5251 6.479990 TCTGTACCGCATGAAAATTCTGATAG 59.520 38.462 0.00 0.00 0.00 2.08
2964 5252 6.345298 TCTGTACCGCATGAAAATTCTGATA 58.655 36.000 0.00 0.00 0.00 2.15
2965 5253 5.185454 TCTGTACCGCATGAAAATTCTGAT 58.815 37.500 0.00 0.00 0.00 2.90
2966 5254 4.574892 TCTGTACCGCATGAAAATTCTGA 58.425 39.130 0.00 0.00 0.00 3.27
2967 5255 4.944962 TCTGTACCGCATGAAAATTCTG 57.055 40.909 0.00 0.00 0.00 3.02
2968 5256 5.957842 TTTCTGTACCGCATGAAAATTCT 57.042 34.783 0.00 0.00 0.00 2.40
2969 5257 5.344933 GGTTTTCTGTACCGCATGAAAATTC 59.655 40.000 0.00 0.00 37.00 2.17
2970 5258 5.010617 AGGTTTTCTGTACCGCATGAAAATT 59.989 36.000 0.00 0.00 40.69 1.82
2971 5259 4.522789 AGGTTTTCTGTACCGCATGAAAAT 59.477 37.500 0.00 0.00 40.69 1.82
2972 5260 3.886505 AGGTTTTCTGTACCGCATGAAAA 59.113 39.130 0.00 0.00 40.69 2.29
2973 5261 3.482436 AGGTTTTCTGTACCGCATGAAA 58.518 40.909 0.00 0.00 40.69 2.69
2974 5262 3.134574 AGGTTTTCTGTACCGCATGAA 57.865 42.857 0.00 0.00 40.69 2.57
2975 5263 2.811431 CAAGGTTTTCTGTACCGCATGA 59.189 45.455 0.00 0.00 40.69 3.07
2976 5264 2.552315 ACAAGGTTTTCTGTACCGCATG 59.448 45.455 0.00 0.00 40.69 4.06
2977 5265 2.812011 GACAAGGTTTTCTGTACCGCAT 59.188 45.455 0.00 0.00 40.69 4.73
2978 5266 2.158871 AGACAAGGTTTTCTGTACCGCA 60.159 45.455 0.00 0.00 40.69 5.69
2979 5267 2.490991 AGACAAGGTTTTCTGTACCGC 58.509 47.619 0.00 0.00 40.69 5.68
2980 5268 3.875134 ACAAGACAAGGTTTTCTGTACCG 59.125 43.478 0.00 0.00 40.69 4.02
2981 5269 4.879545 TGACAAGACAAGGTTTTCTGTACC 59.120 41.667 0.00 0.00 35.85 3.34
2982 5270 6.038271 ACATGACAAGACAAGGTTTTCTGTAC 59.962 38.462 0.00 0.00 0.00 2.90
2983 5271 6.038161 CACATGACAAGACAAGGTTTTCTGTA 59.962 38.462 0.00 0.00 0.00 2.74
2984 5272 4.949856 ACATGACAAGACAAGGTTTTCTGT 59.050 37.500 0.00 0.00 0.00 3.41
2985 5273 5.276270 CACATGACAAGACAAGGTTTTCTG 58.724 41.667 0.00 0.00 0.00 3.02
2986 5274 4.202050 GCACATGACAAGACAAGGTTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
2987 5275 4.044426 GCACATGACAAGACAAGGTTTTC 58.956 43.478 0.00 0.00 0.00 2.29
2988 5276 3.701040 AGCACATGACAAGACAAGGTTTT 59.299 39.130 0.00 0.00 0.00 2.43
2989 5277 3.290710 AGCACATGACAAGACAAGGTTT 58.709 40.909 0.00 0.00 0.00 3.27
2990 5278 2.936202 AGCACATGACAAGACAAGGTT 58.064 42.857 0.00 0.00 0.00 3.50
2991 5279 2.645838 AGCACATGACAAGACAAGGT 57.354 45.000 0.00 0.00 0.00 3.50
2992 5280 4.456911 ACATTAGCACATGACAAGACAAGG 59.543 41.667 0.00 0.00 0.00 3.61
2993 5281 5.618056 ACATTAGCACATGACAAGACAAG 57.382 39.130 0.00 0.00 0.00 3.16
2994 5282 5.411361 GGTACATTAGCACATGACAAGACAA 59.589 40.000 0.00 0.00 0.00 3.18
2995 5283 4.935205 GGTACATTAGCACATGACAAGACA 59.065 41.667 0.00 0.00 0.00 3.41
2996 5284 4.935205 TGGTACATTAGCACATGACAAGAC 59.065 41.667 0.00 0.00 0.00 3.01
2997 5285 5.159273 TGGTACATTAGCACATGACAAGA 57.841 39.130 0.00 0.00 0.00 3.02
3014 5302 2.420022 CCAGCAAGCACTAACATGGTAC 59.580 50.000 0.00 0.00 0.00 3.34
3015 5303 2.039746 ACCAGCAAGCACTAACATGGTA 59.960 45.455 0.00 0.00 37.79 3.25
3016 5304 1.202927 ACCAGCAAGCACTAACATGGT 60.203 47.619 0.00 0.00 34.80 3.55
3017 5305 1.470098 GACCAGCAAGCACTAACATGG 59.530 52.381 0.00 0.00 0.00 3.66
3018 5306 2.161012 CAGACCAGCAAGCACTAACATG 59.839 50.000 0.00 0.00 0.00 3.21
3019 5307 2.038952 TCAGACCAGCAAGCACTAACAT 59.961 45.455 0.00 0.00 0.00 2.71
3051 5339 8.922931 AATATATGTAATGCAGGACAACATCA 57.077 30.769 7.48 0.00 32.99 3.07
3106 5394 6.878923 TGAAAAGAACCAGTATGATCGTTGAT 59.121 34.615 0.00 0.00 39.69 2.57
3344 5632 0.248866 CGGACAGGGTGCAAAAACAC 60.249 55.000 0.00 0.00 39.94 3.32
3354 5642 2.841881 ACACCATAATAACGGACAGGGT 59.158 45.455 0.00 0.00 0.00 4.34
3444 5733 3.316029 TCTTGAAATGTCACAACAGGCTG 59.684 43.478 14.16 14.16 39.20 4.85
3480 5770 4.818546 CACTCAAGTATAGGGCAAATCCTG 59.181 45.833 0.00 0.00 37.75 3.86
3520 5810 9.918630 AATGAGACCAAATTCAAACATTAAGAG 57.081 29.630 0.00 0.00 0.00 2.85
3674 5964 6.976349 CACCATGAAACATGATGATCGAAAAT 59.024 34.615 12.46 0.00 0.00 1.82
3838 6128 9.995003 AGAATCATTAGTGAATCTCCATAAGAC 57.005 33.333 0.16 0.00 39.82 3.01
4141 6431 3.719268 AACTACAATGGCATCACAGGA 57.281 42.857 0.00 0.00 0.00 3.86
4257 7929 5.355071 TGTGAATCTTTGACATGCAGGATAC 59.645 40.000 4.84 0.00 0.00 2.24
4329 8001 2.164219 AGTTGTGCACCAAAAGACAGTG 59.836 45.455 15.69 0.00 34.07 3.66
4330 8002 2.446435 AGTTGTGCACCAAAAGACAGT 58.554 42.857 15.69 0.00 34.07 3.55
4331 8003 3.243068 GGTAGTTGTGCACCAAAAGACAG 60.243 47.826 15.69 0.00 34.07 3.51
4332 8004 2.685897 GGTAGTTGTGCACCAAAAGACA 59.314 45.455 15.69 0.00 34.07 3.41
4333 8005 2.286772 CGGTAGTTGTGCACCAAAAGAC 60.287 50.000 15.69 4.85 34.07 3.01
4334 8006 1.944024 CGGTAGTTGTGCACCAAAAGA 59.056 47.619 15.69 0.00 34.07 2.52
4335 8007 1.944024 TCGGTAGTTGTGCACCAAAAG 59.056 47.619 15.69 0.00 34.07 2.27
4336 8008 2.039818 TCGGTAGTTGTGCACCAAAA 57.960 45.000 15.69 0.00 34.07 2.44
4337 8009 2.264005 ATCGGTAGTTGTGCACCAAA 57.736 45.000 15.69 0.00 34.07 3.28
4338 8010 2.264005 AATCGGTAGTTGTGCACCAA 57.736 45.000 15.69 6.00 34.25 3.67
4339 8011 3.404224 TTAATCGGTAGTTGTGCACCA 57.596 42.857 15.69 0.00 34.25 4.17
4340 8012 3.749609 ACTTTAATCGGTAGTTGTGCACC 59.250 43.478 15.69 0.00 0.00 5.01
4341 8013 5.352643 AACTTTAATCGGTAGTTGTGCAC 57.647 39.130 10.75 10.75 31.31 4.57
4342 8014 5.761234 AGAAACTTTAATCGGTAGTTGTGCA 59.239 36.000 0.00 0.00 32.76 4.57
4343 8015 6.073440 TGAGAAACTTTAATCGGTAGTTGTGC 60.073 38.462 0.00 0.00 32.76 4.57
4344 8016 7.416154 TGAGAAACTTTAATCGGTAGTTGTG 57.584 36.000 0.00 0.00 32.76 3.33
4345 8017 8.617290 ATTGAGAAACTTTAATCGGTAGTTGT 57.383 30.769 0.00 0.00 32.76 3.32
4510 8206 9.087424 TCAGAAATTCAGTGTTATGAGTATTCG 57.913 33.333 0.00 0.00 0.00 3.34
4573 8269 7.118723 TGAATGGATATGGAGTTTAAGCAGTT 58.881 34.615 0.00 0.00 0.00 3.16
4575 8271 6.293845 GCTGAATGGATATGGAGTTTAAGCAG 60.294 42.308 0.00 0.00 0.00 4.24
4576 8272 5.532406 GCTGAATGGATATGGAGTTTAAGCA 59.468 40.000 0.00 0.00 0.00 3.91
4577 8273 5.767168 AGCTGAATGGATATGGAGTTTAAGC 59.233 40.000 0.00 0.00 0.00 3.09
4578 8274 6.293845 GCAGCTGAATGGATATGGAGTTTAAG 60.294 42.308 20.43 0.00 0.00 1.85
4594 8291 7.469732 GCTTCTGATAATTAAAGGCAGCTGAAT 60.470 37.037 20.43 4.67 0.00 2.57
4618 8315 3.700538 TCATGTAAGAAAATGGCCAGCT 58.299 40.909 13.05 2.66 0.00 4.24
4637 8334 6.600427 TGATATGAAATTCAAGAGCAGCTTCA 59.400 34.615 0.00 0.00 33.60 3.02
4662 8359 3.768757 GACCATAGCTCCTGCAGATAGAT 59.231 47.826 17.39 13.42 42.74 1.98
4663 8360 3.161067 GACCATAGCTCCTGCAGATAGA 58.839 50.000 17.39 2.76 42.74 1.98
4664 8361 2.896044 TGACCATAGCTCCTGCAGATAG 59.104 50.000 17.39 13.34 42.74 2.08
4665 8362 2.962859 TGACCATAGCTCCTGCAGATA 58.037 47.619 17.39 1.38 42.74 1.98
4823 8520 3.441572 GGACAAGTTGCTGCATAACATCT 59.558 43.478 1.84 3.79 0.00 2.90
4921 8618 2.350772 GCCACACACAGTCAATGTAAGC 60.351 50.000 0.00 0.00 41.41 3.09
4932 8629 1.967319 AGTTAACCTGCCACACACAG 58.033 50.000 0.88 0.00 34.82 3.66
5363 9062 7.324388 TGATTAGGAGAAACCAGGTAAAGAA 57.676 36.000 0.00 0.00 42.04 2.52
5453 9153 0.615331 AGCTAACAAGCAGGCTAGCA 59.385 50.000 18.24 0.00 39.39 3.49
5458 9158 2.161211 CAGAAGAAGCTAACAAGCAGGC 59.839 50.000 0.00 0.00 37.25 4.85
5563 9264 2.033832 GCGTTTCAACAGCAAAACCATG 60.034 45.455 0.00 0.00 32.90 3.66
5583 9284 3.912496 AATTTAGGGCAAAAGGGATGC 57.088 42.857 0.00 0.00 43.08 3.91
5733 9434 1.651987 ATGGTACCTGACATTTCGCG 58.348 50.000 14.36 0.00 0.00 5.87
5858 9562 7.285401 GTCCTGATATGCCTTGATAAAGGAAAA 59.715 37.037 13.69 0.00 42.62 2.29
5879 9583 5.885230 TCATAAATTGCACTTGAGTCCTG 57.115 39.130 0.00 0.00 0.00 3.86
5921 9625 2.354259 CTCTGCTAAGGCCTGAACAAG 58.646 52.381 5.69 0.59 37.74 3.16
5963 9667 6.513180 TGAATATAAGAACTCGGTGACCATC 58.487 40.000 1.11 0.00 0.00 3.51
6111 9815 9.774413 CGGGATTTTACCAGTTAAGAACTATAT 57.226 33.333 0.00 0.00 40.46 0.86
6116 9820 6.564709 AACGGGATTTTACCAGTTAAGAAC 57.435 37.500 0.00 0.00 43.95 3.01
6137 9841 1.111277 ACTGGGGTGCTGAAACAAAC 58.889 50.000 0.00 0.00 0.00 2.93
6404 10108 5.340667 GTCAGAAACAGCAAAAATAGAAGCG 59.659 40.000 0.00 0.00 0.00 4.68
6438 10142 7.936496 TGAATACTTCAAAATATGCTCACCA 57.064 32.000 0.00 0.00 36.59 4.17
6626 10330 9.314321 CCAACAAAGATCGTATTATCTAACTGT 57.686 33.333 0.00 0.00 35.10 3.55
6875 10621 3.424703 ACATCACATAGCAAAAGCAGGT 58.575 40.909 0.00 0.00 0.00 4.00
6876 10622 3.181493 GGACATCACATAGCAAAAGCAGG 60.181 47.826 0.00 0.00 0.00 4.85
6877 10623 3.693085 AGGACATCACATAGCAAAAGCAG 59.307 43.478 0.00 0.00 0.00 4.24
6878 10624 3.689347 AGGACATCACATAGCAAAAGCA 58.311 40.909 0.00 0.00 0.00 3.91
6879 10625 3.944015 AGAGGACATCACATAGCAAAAGC 59.056 43.478 0.00 0.00 0.00 3.51
6880 10626 4.201891 GCAGAGGACATCACATAGCAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
6957 10703 7.829211 CCAGTATCCTTCCTTTTTATCTGAACA 59.171 37.037 0.00 0.00 0.00 3.18
7207 10954 6.656632 TCAGGTACATCAGTTCTATCATCC 57.343 41.667 0.00 0.00 0.00 3.51
7559 11327 7.064016 GGTTTCAGCACTTTCTAGAATCTACAG 59.936 40.741 5.89 2.76 0.00 2.74
7702 11472 4.333372 AGTGTGGACGAAATGTTAAAACGT 59.667 37.500 0.00 0.00 39.82 3.99
7716 11486 3.997021 AGCTTAAATCTCAAGTGTGGACG 59.003 43.478 0.00 0.00 0.00 4.79
7739 11509 5.357596 CAGAGGGAGTACTTAACAGAGGTAC 59.642 48.000 0.00 0.00 36.89 3.34
7764 11586 1.156736 CAGCGACACTTAGTTTGGGG 58.843 55.000 0.00 0.00 0.00 4.96
7771 11593 9.517609 ACTTTATACTAAATCAGCGACACTTAG 57.482 33.333 0.00 0.00 0.00 2.18
7792 11614 7.149973 AGTGTCGCTGATTTAGTACAACTTTA 58.850 34.615 0.00 0.00 0.00 1.85
7831 11663 2.558359 CAGTCAGAAACAACCATTCCCC 59.442 50.000 0.00 0.00 0.00 4.81
7838 11670 3.489785 CGTACAGACAGTCAGAAACAACC 59.510 47.826 2.66 0.00 0.00 3.77
7918 11750 3.549794 GCTGATAATTTGAGGGCTGAGT 58.450 45.455 0.00 0.00 0.00 3.41
8032 11864 2.604046 AACTCTGCAGAGAACACGTT 57.396 45.000 42.76 26.37 44.74 3.99
8184 12065 0.678950 ATGCAAAAACAGTTCCCCCG 59.321 50.000 0.00 0.00 0.00 5.73
8185 12066 2.493035 CAATGCAAAAACAGTTCCCCC 58.507 47.619 0.00 0.00 0.00 5.40
8230 12115 6.935741 TCTTTTCGAGAAGAAATGTTTGGA 57.064 33.333 15.45 0.00 46.98 3.53
8399 12288 3.956199 CCAGGCAAAATGATAGACCATGT 59.044 43.478 0.00 0.00 0.00 3.21
8430 12343 8.932945 ATATTATACAGCATTCCATCTACACG 57.067 34.615 0.00 0.00 0.00 4.49
8465 12382 4.210120 GCTTAGTTCCATTATCAGCACTCG 59.790 45.833 0.00 0.00 0.00 4.18
8475 12392 7.872993 CAGGATAAAGATCGCTTAGTTCCATTA 59.127 37.037 10.46 0.00 32.85 1.90
8554 12471 8.131731 GCATCAGGGAGAAAACATTATAAGAAC 58.868 37.037 0.00 0.00 0.00 3.01
8574 12491 1.604947 CCAGATCGCTAGTGGCATCAG 60.605 57.143 2.90 0.00 41.91 2.90
8603 12595 2.741612 CGCAAAGCAAATTCAAGGTGA 58.258 42.857 0.00 0.00 0.00 4.02
8634 12626 2.431954 AACATGCTTGGAGCTATGCT 57.568 45.000 4.44 0.00 42.97 3.79
8640 12632 2.294233 TCAACAGAAACATGCTTGGAGC 59.706 45.455 4.44 0.00 42.82 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.