Multiple sequence alignment - TraesCS2D01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G400100 chr2D 100.000 4892 0 0 1 4892 513106574 513101683 0.000000e+00 9034.0
1 TraesCS2D01G400100 chr2B 85.774 2376 168 80 1779 4059 603921436 603919136 0.000000e+00 2359.0
2 TraesCS2D01G400100 chr2B 88.279 401 17 13 609 1000 603922720 603922341 2.080000e-123 453.0
3 TraesCS2D01G400100 chr2B 82.505 503 41 23 1296 1788 603921958 603921493 9.870000e-107 398.0
4 TraesCS2D01G400100 chr2B 89.726 292 25 4 998 1287 603922287 603921999 7.740000e-98 368.0
5 TraesCS2D01G400100 chr2B 87.349 332 25 12 4217 4540 603915757 603915435 1.000000e-96 364.0
6 TraesCS2D01G400100 chr2B 96.753 154 4 1 4064 4216 603919081 603918928 6.280000e-64 255.0
7 TraesCS2D01G400100 chr2B 88.372 215 14 3 4514 4724 603915392 603915185 1.050000e-61 248.0
8 TraesCS2D01G400100 chr2B 90.526 190 9 2 1 190 603923214 603923034 4.890000e-60 243.0
9 TraesCS2D01G400100 chr2B 93.750 128 6 2 448 574 603922845 603922719 1.800000e-44 191.0
10 TraesCS2D01G400100 chr2A 86.269 2265 156 81 998 3204 656968266 656966099 0.000000e+00 2316.0
11 TraesCS2D01G400100 chr2A 85.543 920 63 39 3175 4051 656966096 656965204 0.000000e+00 898.0
12 TraesCS2D01G400100 chr2A 84.364 550 39 23 457 992 656968829 656968313 3.400000e-136 496.0
13 TraesCS2D01G400100 chr2A 84.922 451 35 17 4063 4493 656965148 656964711 4.530000e-115 425.0
14 TraesCS2D01G400100 chr2A 93.605 172 11 0 4719 4890 656962798 656962627 1.750000e-64 257.0
15 TraesCS2D01G400100 chr2A 81.712 257 11 10 4489 4724 656964666 656964425 1.080000e-41 182.0
16 TraesCS2D01G400100 chr2A 94.444 54 3 0 1 54 656969248 656969195 3.140000e-12 84.2
17 TraesCS2D01G400100 chr2A 93.750 48 3 0 143 190 656969150 656969103 6.790000e-09 73.1
18 TraesCS2D01G400100 chr2A 100.000 33 0 0 75 107 656969197 656969165 1.470000e-05 62.1
19 TraesCS2D01G400100 chr4B 83.568 213 22 7 537 749 402080060 402080259 2.320000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G400100 chr2D 513101683 513106574 4891 True 9034.000000 9034 100.000 1 4892 1 chr2D.!!$R1 4891
1 TraesCS2D01G400100 chr2B 603915185 603923214 8029 True 542.111111 2359 89.226 1 4724 9 chr2B.!!$R1 4723
2 TraesCS2D01G400100 chr2A 656962627 656969248 6621 True 532.600000 2316 89.401 1 4890 9 chr2A.!!$R1 4889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.035458 CACCAACACTCCTCCACTCC 59.965 60.0 0.00 0.0 0.00 3.85 F
287 311 0.035881 TCCTTCAAGCTGCTGTCCTG 59.964 55.0 1.35 0.0 0.00 3.86 F
301 325 0.036858 GTCCTGTCCTCCTGCTGTTC 60.037 60.0 0.00 0.0 0.00 3.18 F
305 329 0.106708 TGTCCTCCTGCTGTTCACAC 59.893 55.0 0.00 0.0 0.00 3.82 F
308 332 0.249868 CCTCCTGCTGTTCACACGAA 60.250 55.0 0.00 0.0 0.00 3.85 F
390 452 0.378962 AGCGTTGTTGTTTTAGCGCA 59.621 45.0 11.47 0.0 46.09 6.09 F
846 954 0.469892 ACAGGCAAGAAACCAAGGGG 60.470 55.0 0.00 0.0 41.29 4.79 F
2623 2950 0.109342 AATAATGGAGGGCCTCAGCG 59.891 55.0 33.27 0.0 41.24 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1715 0.035725 CCTGCAGATGGCTCTTGACA 60.036 55.000 17.39 0.0 45.15 3.58 R
2127 2419 0.109153 TTTTGGAGCAGAGCAGAGCA 59.891 50.000 0.00 0.0 0.00 4.26 R
2128 2420 0.803740 CTTTTGGAGCAGAGCAGAGC 59.196 55.000 0.00 0.0 0.00 4.09 R
2248 2551 1.530013 CTCCTTTGCAGCCCTGGTTG 61.530 60.000 0.00 0.0 0.00 3.77 R
2255 2558 2.282745 AGTGCCTCCTTTGCAGCC 60.283 61.111 0.00 0.0 39.87 4.85 R
2300 2606 2.362889 GTGGGCACATGAAGGGGG 60.363 66.667 0.00 0.0 0.00 5.40 R
2649 2976 2.032681 AGGTCGGAAACAGCAGCC 59.967 61.111 0.00 0.0 0.00 4.85 R
4216 4727 0.031178 CCAGCACACTTTTGACCTGC 59.969 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.846693 AGGGTTCTGCCTGTGTTCTT 59.153 50.000 0.00 0.00 37.43 2.52
108 109 3.414136 GACGGGGTATGGCATGGCA 62.414 63.158 25.52 25.52 0.00 4.92
109 110 2.115910 CGGGGTATGGCATGGCAT 59.884 61.111 33.85 33.85 0.00 4.40
137 138 2.447714 GGGATCTGAGGGAGGTGCC 61.448 68.421 0.00 0.00 35.88 5.01
138 139 1.383803 GGATCTGAGGGAGGTGCCT 60.384 63.158 0.00 0.00 36.66 4.75
139 140 1.694133 GGATCTGAGGGAGGTGCCTG 61.694 65.000 0.00 0.00 36.66 4.85
140 141 1.692042 ATCTGAGGGAGGTGCCTGG 60.692 63.158 0.00 0.00 36.66 4.45
141 142 2.186873 ATCTGAGGGAGGTGCCTGGA 62.187 60.000 0.00 0.00 36.66 3.86
173 174 1.137594 ATCCGGTTTGTCCCCTTCCA 61.138 55.000 0.00 0.00 0.00 3.53
181 182 0.856982 TGTCCCCTTCCATTTGGTGT 59.143 50.000 0.00 0.00 36.34 4.16
184 185 1.203125 TCCCCTTCCATTTGGTGTTCC 60.203 52.381 0.00 0.00 36.34 3.62
185 186 1.266178 CCCTTCCATTTGGTGTTCCC 58.734 55.000 0.00 0.00 36.34 3.97
186 187 1.203174 CCCTTCCATTTGGTGTTCCCT 60.203 52.381 0.00 0.00 36.34 4.20
187 188 2.171003 CCTTCCATTTGGTGTTCCCTC 58.829 52.381 0.00 0.00 36.34 4.30
188 189 1.812571 CTTCCATTTGGTGTTCCCTCG 59.187 52.381 0.00 0.00 36.34 4.63
189 190 0.608035 TCCATTTGGTGTTCCCTCGC 60.608 55.000 0.00 0.00 36.34 5.03
190 191 1.595093 CCATTTGGTGTTCCCTCGCC 61.595 60.000 0.00 0.00 38.35 5.54
191 192 0.609131 CATTTGGTGTTCCCTCGCCT 60.609 55.000 0.00 0.00 38.63 5.52
192 193 0.322546 ATTTGGTGTTCCCTCGCCTC 60.323 55.000 0.00 0.00 38.63 4.70
193 194 2.725203 TTTGGTGTTCCCTCGCCTCG 62.725 60.000 0.00 0.00 38.63 4.63
197 198 4.516195 GTTCCCTCGCCTCGCCTC 62.516 72.222 0.00 0.00 0.00 4.70
240 241 2.355481 GCAAGCAGCAGCACCAAC 60.355 61.111 3.17 0.00 45.49 3.77
241 242 3.121934 CAAGCAGCAGCACCAACA 58.878 55.556 3.17 0.00 45.49 3.33
242 243 1.299620 CAAGCAGCAGCACCAACAC 60.300 57.895 3.17 0.00 45.49 3.32
244 245 1.450531 AAGCAGCAGCACCAACACTC 61.451 55.000 3.17 0.00 45.49 3.51
247 248 1.072159 AGCAGCACCAACACTCCTC 59.928 57.895 0.00 0.00 0.00 3.71
249 250 1.451504 CAGCACCAACACTCCTCCA 59.548 57.895 0.00 0.00 0.00 3.86
250 251 0.886490 CAGCACCAACACTCCTCCAC 60.886 60.000 0.00 0.00 0.00 4.02
251 252 1.056700 AGCACCAACACTCCTCCACT 61.057 55.000 0.00 0.00 0.00 4.00
252 253 0.603975 GCACCAACACTCCTCCACTC 60.604 60.000 0.00 0.00 0.00 3.51
253 254 0.035458 CACCAACACTCCTCCACTCC 59.965 60.000 0.00 0.00 0.00 3.85
254 255 0.399949 ACCAACACTCCTCCACTCCA 60.400 55.000 0.00 0.00 0.00 3.86
283 307 1.678101 GTTGTTCCTTCAAGCTGCTGT 59.322 47.619 1.35 0.00 0.00 4.40
287 311 0.035881 TCCTTCAAGCTGCTGTCCTG 59.964 55.000 1.35 0.00 0.00 3.86
288 312 0.250640 CCTTCAAGCTGCTGTCCTGT 60.251 55.000 1.35 0.00 0.00 4.00
290 314 0.250467 TTCAAGCTGCTGTCCTGTCC 60.250 55.000 1.35 0.00 0.00 4.02
291 315 1.123861 TCAAGCTGCTGTCCTGTCCT 61.124 55.000 1.35 0.00 0.00 3.85
292 316 0.673022 CAAGCTGCTGTCCTGTCCTC 60.673 60.000 1.35 0.00 0.00 3.71
293 317 1.835927 AAGCTGCTGTCCTGTCCTCC 61.836 60.000 1.35 0.00 0.00 4.30
294 318 2.289532 GCTGCTGTCCTGTCCTCCT 61.290 63.158 0.00 0.00 0.00 3.69
296 320 2.267324 GCTGTCCTGTCCTCCTGC 59.733 66.667 0.00 0.00 0.00 4.85
297 321 2.289532 GCTGTCCTGTCCTCCTGCT 61.290 63.158 0.00 0.00 0.00 4.24
298 322 1.595882 CTGTCCTGTCCTCCTGCTG 59.404 63.158 0.00 0.00 0.00 4.41
299 323 1.152247 TGTCCTGTCCTCCTGCTGT 60.152 57.895 0.00 0.00 0.00 4.40
300 324 0.764369 TGTCCTGTCCTCCTGCTGTT 60.764 55.000 0.00 0.00 0.00 3.16
301 325 0.036858 GTCCTGTCCTCCTGCTGTTC 60.037 60.000 0.00 0.00 0.00 3.18
302 326 0.471780 TCCTGTCCTCCTGCTGTTCA 60.472 55.000 0.00 0.00 0.00 3.18
303 327 0.321122 CCTGTCCTCCTGCTGTTCAC 60.321 60.000 0.00 0.00 0.00 3.18
304 328 0.394192 CTGTCCTCCTGCTGTTCACA 59.606 55.000 0.00 0.00 0.00 3.58
305 329 0.106708 TGTCCTCCTGCTGTTCACAC 59.893 55.000 0.00 0.00 0.00 3.82
306 330 0.946221 GTCCTCCTGCTGTTCACACG 60.946 60.000 0.00 0.00 0.00 4.49
307 331 1.112916 TCCTCCTGCTGTTCACACGA 61.113 55.000 0.00 0.00 0.00 4.35
308 332 0.249868 CCTCCTGCTGTTCACACGAA 60.250 55.000 0.00 0.00 0.00 3.85
309 333 1.581934 CTCCTGCTGTTCACACGAAA 58.418 50.000 0.00 0.00 31.43 3.46
310 334 2.146342 CTCCTGCTGTTCACACGAAAT 58.854 47.619 0.00 0.00 31.43 2.17
311 335 3.325870 CTCCTGCTGTTCACACGAAATA 58.674 45.455 0.00 0.00 31.43 1.40
312 336 3.734463 TCCTGCTGTTCACACGAAATAA 58.266 40.909 0.00 0.00 31.43 1.40
313 337 3.496884 TCCTGCTGTTCACACGAAATAAC 59.503 43.478 0.00 0.00 31.43 1.89
314 338 3.469629 CTGCTGTTCACACGAAATAACG 58.530 45.455 0.00 0.00 39.31 3.18
315 339 3.124560 TGCTGTTCACACGAAATAACGA 58.875 40.909 0.00 0.00 37.03 3.85
316 340 3.743911 TGCTGTTCACACGAAATAACGAT 59.256 39.130 0.00 0.00 37.03 3.73
317 341 4.081761 GCTGTTCACACGAAATAACGATG 58.918 43.478 0.00 0.00 37.03 3.84
318 342 4.637968 CTGTTCACACGAAATAACGATGG 58.362 43.478 0.00 0.00 37.03 3.51
319 343 4.059511 TGTTCACACGAAATAACGATGGT 58.940 39.130 0.00 0.00 37.03 3.55
320 344 4.512198 TGTTCACACGAAATAACGATGGTT 59.488 37.500 0.00 0.00 34.93 3.67
321 345 5.007823 TGTTCACACGAAATAACGATGGTTT 59.992 36.000 0.00 0.00 33.48 3.27
322 346 5.024768 TCACACGAAATAACGATGGTTTG 57.975 39.130 0.00 0.00 37.58 2.93
323 347 4.083749 TCACACGAAATAACGATGGTTTGG 60.084 41.667 0.00 0.00 37.58 3.28
324 348 3.168193 CACGAAATAACGATGGTTTGGC 58.832 45.455 0.00 0.00 37.58 4.52
325 349 3.078837 ACGAAATAACGATGGTTTGGCT 58.921 40.909 0.00 0.00 37.58 4.75
326 350 3.119990 ACGAAATAACGATGGTTTGGCTG 60.120 43.478 0.00 0.00 37.58 4.85
327 351 3.126171 CGAAATAACGATGGTTTGGCTGA 59.874 43.478 0.00 0.00 37.58 4.26
328 352 4.201910 CGAAATAACGATGGTTTGGCTGAT 60.202 41.667 0.00 0.00 37.58 2.90
329 353 5.650543 GAAATAACGATGGTTTGGCTGATT 58.349 37.500 0.00 0.00 37.58 2.57
330 354 5.659440 AATAACGATGGTTTGGCTGATTT 57.341 34.783 0.00 0.00 37.58 2.17
331 355 5.659440 ATAACGATGGTTTGGCTGATTTT 57.341 34.783 0.00 0.00 37.58 1.82
332 356 3.302365 ACGATGGTTTGGCTGATTTTG 57.698 42.857 0.00 0.00 0.00 2.44
333 357 1.994779 CGATGGTTTGGCTGATTTTGC 59.005 47.619 0.00 0.00 0.00 3.68
334 358 2.609984 CGATGGTTTGGCTGATTTTGCA 60.610 45.455 0.00 0.00 0.00 4.08
335 359 2.237393 TGGTTTGGCTGATTTTGCAC 57.763 45.000 0.00 0.00 0.00 4.57
336 360 1.483827 TGGTTTGGCTGATTTTGCACA 59.516 42.857 0.00 0.00 0.00 4.57
337 361 2.104451 TGGTTTGGCTGATTTTGCACAT 59.896 40.909 0.00 0.00 0.00 3.21
338 362 2.481185 GGTTTGGCTGATTTTGCACATG 59.519 45.455 0.00 0.00 0.00 3.21
339 363 3.391965 GTTTGGCTGATTTTGCACATGA 58.608 40.909 0.00 0.00 0.00 3.07
340 364 3.747854 TTGGCTGATTTTGCACATGAA 57.252 38.095 0.00 0.00 0.00 2.57
341 365 3.747854 TGGCTGATTTTGCACATGAAA 57.252 38.095 0.00 0.00 0.00 2.69
342 366 3.655486 TGGCTGATTTTGCACATGAAAG 58.345 40.909 0.00 0.00 0.00 2.62
343 367 3.321396 TGGCTGATTTTGCACATGAAAGA 59.679 39.130 0.00 0.00 0.00 2.52
344 368 3.924686 GGCTGATTTTGCACATGAAAGAG 59.075 43.478 0.00 0.00 0.00 2.85
345 369 3.367025 GCTGATTTTGCACATGAAAGAGC 59.633 43.478 0.00 0.00 0.00 4.09
346 370 3.567530 TGATTTTGCACATGAAAGAGCG 58.432 40.909 0.00 0.00 0.00 5.03
347 371 3.004629 TGATTTTGCACATGAAAGAGCGT 59.995 39.130 0.00 0.00 0.00 5.07
348 372 2.686558 TTTGCACATGAAAGAGCGTC 57.313 45.000 0.00 0.00 0.00 5.19
349 373 0.512518 TTGCACATGAAAGAGCGTCG 59.487 50.000 0.00 0.00 0.00 5.12
350 374 1.225854 GCACATGAAAGAGCGTCGC 60.226 57.895 9.80 9.80 0.00 5.19
351 375 1.630244 GCACATGAAAGAGCGTCGCT 61.630 55.000 21.92 21.92 43.88 4.93
352 376 1.629013 CACATGAAAGAGCGTCGCTA 58.371 50.000 21.77 4.07 39.88 4.26
353 377 2.196749 CACATGAAAGAGCGTCGCTAT 58.803 47.619 21.77 15.42 39.88 2.97
354 378 2.604914 CACATGAAAGAGCGTCGCTATT 59.395 45.455 21.77 21.21 42.09 1.73
359 383 3.927552 AAAGAGCGTCGCTATTTTAGC 57.072 42.857 28.86 12.18 45.87 3.09
372 396 6.546056 GCTATTTTAGCGCAAAAAGAAGAG 57.454 37.500 11.47 3.91 42.62 2.85
373 397 5.003872 GCTATTTTAGCGCAAAAAGAAGAGC 59.996 40.000 11.47 10.05 42.62 4.09
388 450 2.663279 AGAGCGTTGTTGTTTTAGCG 57.337 45.000 0.00 0.00 0.00 4.26
390 452 0.378962 AGCGTTGTTGTTTTAGCGCA 59.621 45.000 11.47 0.00 46.09 6.09
393 455 2.028165 GCGTTGTTGTTTTAGCGCAAAA 59.972 40.909 11.47 11.73 43.62 2.44
403 470 0.950836 TAGCGCAAAAGCATGTGTGT 59.049 45.000 11.47 0.00 40.15 3.72
408 475 2.121786 GCAAAAGCATGTGTGTGTGAG 58.878 47.619 0.00 0.00 0.00 3.51
429 496 1.229082 ACACAGGGAGCTCCGGTTA 60.229 57.895 26.36 0.00 42.07 2.85
435 502 1.120530 GGGAGCTCCGGTTAGAATGA 58.879 55.000 26.36 0.00 36.71 2.57
437 504 2.104963 GGGAGCTCCGGTTAGAATGAAT 59.895 50.000 26.36 0.00 36.71 2.57
439 506 4.200092 GGAGCTCCGGTTAGAATGAATTT 58.800 43.478 19.06 0.00 0.00 1.82
440 507 4.640647 GGAGCTCCGGTTAGAATGAATTTT 59.359 41.667 19.06 0.00 0.00 1.82
441 508 5.125578 GGAGCTCCGGTTAGAATGAATTTTT 59.874 40.000 19.06 0.00 0.00 1.94
442 509 6.196079 AGCTCCGGTTAGAATGAATTTTTC 57.804 37.500 0.00 0.00 0.00 2.29
443 510 5.946377 AGCTCCGGTTAGAATGAATTTTTCT 59.054 36.000 0.00 8.94 37.25 2.52
444 511 6.434340 AGCTCCGGTTAGAATGAATTTTTCTT 59.566 34.615 0.00 0.00 35.19 2.52
462 558 3.082548 TCTTGAGGTGTTCGGAGAGTAG 58.917 50.000 0.00 0.00 38.43 2.57
472 568 4.117685 GTTCGGAGAGTAGAGAGAGAGAC 58.882 52.174 0.00 0.00 38.43 3.36
485 581 4.272489 AGAGAGAGACAGAGAGATGTTGG 58.728 47.826 0.00 0.00 32.25 3.77
498 595 2.027745 AGATGTTGGCTGGCGATATAGG 60.028 50.000 0.61 0.00 0.00 2.57
591 691 1.296056 CTTTGCAAAGCATGGCAGGC 61.296 55.000 25.26 17.64 41.68 4.85
593 693 3.387947 GCAAAGCATGGCAGGCCT 61.388 61.111 21.78 4.56 36.94 5.19
598 698 2.203181 GCATGGCAGGCCTCTCTC 60.203 66.667 14.13 0.00 36.94 3.20
599 699 2.509916 CATGGCAGGCCTCTCTCC 59.490 66.667 0.00 2.14 36.94 3.71
600 700 2.771762 ATGGCAGGCCTCTCTCCC 60.772 66.667 0.00 0.00 36.94 4.30
601 701 3.344511 ATGGCAGGCCTCTCTCCCT 62.345 63.158 0.00 0.00 36.94 4.20
602 702 3.160748 GGCAGGCCTCTCTCCCTC 61.161 72.222 0.00 0.00 0.00 4.30
603 703 3.160748 GCAGGCCTCTCTCCCTCC 61.161 72.222 0.00 0.00 0.00 4.30
604 704 2.445654 CAGGCCTCTCTCCCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
605 705 3.773154 AGGCCTCTCTCCCTCCCC 61.773 72.222 0.00 0.00 0.00 4.81
607 707 3.773154 GCCTCTCTCCCTCCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
626 726 3.181454 CCCTCTCTCTCTCTCTCTGGTAC 60.181 56.522 0.00 0.00 0.00 3.34
627 727 3.492656 CCTCTCTCTCTCTCTCTGGTACG 60.493 56.522 0.00 0.00 0.00 3.67
628 728 3.101437 TCTCTCTCTCTCTCTGGTACGT 58.899 50.000 0.00 0.00 0.00 3.57
629 729 4.279982 TCTCTCTCTCTCTCTGGTACGTA 58.720 47.826 0.00 0.00 0.00 3.57
630 730 4.897076 TCTCTCTCTCTCTCTGGTACGTAT 59.103 45.833 0.00 0.00 0.00 3.06
631 731 6.069994 TCTCTCTCTCTCTCTGGTACGTATA 58.930 44.000 0.00 0.00 0.00 1.47
632 732 6.722590 TCTCTCTCTCTCTCTGGTACGTATAT 59.277 42.308 0.00 0.00 0.00 0.86
633 733 7.233962 TCTCTCTCTCTCTCTGGTACGTATATT 59.766 40.741 0.00 0.00 0.00 1.28
783 883 1.613925 ACAGACAGACGCAAGCTCTAA 59.386 47.619 0.00 0.00 45.62 2.10
784 884 2.232452 ACAGACAGACGCAAGCTCTAAT 59.768 45.455 0.00 0.00 45.62 1.73
785 885 3.444034 ACAGACAGACGCAAGCTCTAATA 59.556 43.478 0.00 0.00 45.62 0.98
786 886 4.041049 CAGACAGACGCAAGCTCTAATAG 58.959 47.826 0.00 0.00 45.62 1.73
802 905 3.582998 AATAGCCTCTAGCCATGCAAA 57.417 42.857 0.00 0.00 45.47 3.68
846 954 0.469892 ACAGGCAAGAAACCAAGGGG 60.470 55.000 0.00 0.00 41.29 4.79
912 1021 5.114081 CCACCAGTATAAAAACCTACTCCG 58.886 45.833 0.00 0.00 0.00 4.63
974 1083 3.115556 CTTCGAGAGGGAGGCGAG 58.884 66.667 0.00 0.00 35.31 5.03
976 1085 1.720694 CTTCGAGAGGGAGGCGAGAC 61.721 65.000 0.00 0.00 35.31 3.36
982 1107 2.043852 GGGAGGCGAGACAGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
988 1113 0.681564 GGCGAGACAGGAGAAGGAGA 60.682 60.000 0.00 0.00 0.00 3.71
1013 1185 4.925861 GGAGATGGGGAGCAGCGC 62.926 72.222 0.00 0.00 0.00 5.92
1143 1315 3.041946 AGAACACAGTGAGTTCCTTCCT 58.958 45.455 24.28 7.80 44.91 3.36
1186 1364 7.895429 TCCTCAAACATATTCCTTTCCAAAGAT 59.105 33.333 0.32 0.00 38.28 2.40
1193 1371 8.470002 ACATATTCCTTTCCAAAGATTAGTTGC 58.530 33.333 0.32 0.00 38.28 4.17
1196 1374 5.010282 TCCTTTCCAAAGATTAGTTGCTCC 58.990 41.667 0.32 0.00 38.28 4.70
1197 1375 5.012893 CCTTTCCAAAGATTAGTTGCTCCT 58.987 41.667 0.32 0.00 38.28 3.69
1198 1376 5.478332 CCTTTCCAAAGATTAGTTGCTCCTT 59.522 40.000 0.32 0.00 38.28 3.36
1200 1378 7.176690 CCTTTCCAAAGATTAGTTGCTCCTTTA 59.823 37.037 0.32 0.00 38.28 1.85
1207 1385 8.554835 AAGATTAGTTGCTCCTTTACTTCTTC 57.445 34.615 0.00 0.00 0.00 2.87
1210 1388 9.654663 GATTAGTTGCTCCTTTACTTCTTCTTA 57.345 33.333 0.00 0.00 0.00 2.10
1214 1392 8.379331 AGTTGCTCCTTTACTTCTTCTTATTCT 58.621 33.333 0.00 0.00 0.00 2.40
1218 1396 8.384365 GCTCCTTTACTTCTTCTTATTCTTTCG 58.616 37.037 0.00 0.00 0.00 3.46
1219 1397 8.773404 TCCTTTACTTCTTCTTATTCTTTCGG 57.227 34.615 0.00 0.00 0.00 4.30
1224 1402 7.803279 ACTTCTTCTTATTCTTTCGGTTTGT 57.197 32.000 0.00 0.00 0.00 2.83
1239 1417 2.198406 GTTTGTTTTGTTTCTCCCCGC 58.802 47.619 0.00 0.00 0.00 6.13
1249 1427 1.762708 TTCTCCCCGCATCCATTTTC 58.237 50.000 0.00 0.00 0.00 2.29
1260 1439 4.493220 CGCATCCATTTTCTCTTCTCGTTC 60.493 45.833 0.00 0.00 0.00 3.95
1262 1441 5.812642 GCATCCATTTTCTCTTCTCGTTCTA 59.187 40.000 0.00 0.00 0.00 2.10
1269 1448 2.082231 CTCTTCTCGTTCTACACCGGA 58.918 52.381 9.46 0.00 0.00 5.14
1369 1584 1.279496 TCCTTGTAGCTGCCTGATGT 58.721 50.000 0.00 0.00 0.00 3.06
1423 1638 2.684001 TACTAATTGTGACCTGGGCG 57.316 50.000 0.00 0.00 0.00 6.13
1464 1679 1.406205 GCCACTCCTAAGCTGGTTCTC 60.406 57.143 0.00 0.00 0.00 2.87
1465 1680 1.902508 CCACTCCTAAGCTGGTTCTCA 59.097 52.381 0.00 0.00 0.00 3.27
1497 1712 4.381411 GTGTGAAGGAGCTTACCATATCC 58.619 47.826 0.00 0.00 0.00 2.59
1500 1715 4.042187 GTGAAGGAGCTTACCATATCCCAT 59.958 45.833 0.00 0.00 31.86 4.00
1532 1747 5.644644 CCATCTGCAGGTTATTTTCTTCAC 58.355 41.667 15.13 0.00 0.00 3.18
1535 1750 4.690748 TCTGCAGGTTATTTTCTTCACTCG 59.309 41.667 15.13 0.00 0.00 4.18
1536 1751 3.188460 TGCAGGTTATTTTCTTCACTCGC 59.812 43.478 0.00 0.00 0.00 5.03
1565 1780 2.754552 GCACCCATCACTCTTGCAATTA 59.245 45.455 0.00 0.00 33.24 1.40
1567 1782 4.580167 GCACCCATCACTCTTGCAATTATA 59.420 41.667 0.00 0.00 33.24 0.98
1574 1789 7.646526 CCATCACTCTTGCAATTATATTGTGTG 59.353 37.037 0.00 4.14 0.00 3.82
1577 1792 8.236586 TCACTCTTGCAATTATATTGTGTGAAC 58.763 33.333 0.00 0.00 0.00 3.18
1608 1823 3.130160 GCGGAGGAGCCTGCAAAG 61.130 66.667 8.78 0.00 36.57 2.77
1626 1845 7.189693 TGCAAAGTAATACAAAGACTGACTG 57.810 36.000 0.00 0.00 0.00 3.51
1631 1850 4.623932 AATACAAAGACTGACTGCTCCA 57.376 40.909 0.00 0.00 0.00 3.86
1689 1908 2.684843 GCACTCGCAAGGCCAAGAG 61.685 63.158 5.01 10.33 38.36 2.85
1699 1918 1.220477 GGCCAAGAGAGGTGAGAGC 59.780 63.158 0.00 0.00 0.00 4.09
1716 1935 2.178856 GCTGAAGCTCTGCCCTTTC 58.821 57.895 0.00 0.00 35.62 2.62
1720 1939 3.614092 CTGAAGCTCTGCCCTTTCAATA 58.386 45.455 0.00 0.00 0.00 1.90
1730 1949 5.364446 TCTGCCCTTTCAATATTCATGCATT 59.636 36.000 0.00 0.00 0.00 3.56
1788 2007 6.829229 TTACTTAATCAGTCTCGGAAGTCA 57.171 37.500 0.00 0.00 36.88 3.41
1825 2113 5.591877 CCTTGTTTCTTGGGGATAAGAGATG 59.408 44.000 0.00 0.00 37.91 2.90
1867 2155 9.731819 TTGTTATAAATTAGTTTGTCAACGCAA 57.268 25.926 0.00 0.00 38.03 4.85
1868 2156 9.171701 TGTTATAAATTAGTTTGTCAACGCAAC 57.828 29.630 0.00 0.00 38.03 4.17
1887 2175 4.459337 GCAACTTTAGCCTAGTTCCATTGT 59.541 41.667 0.00 0.00 33.73 2.71
1888 2176 5.392057 GCAACTTTAGCCTAGTTCCATTGTC 60.392 44.000 0.00 0.00 33.73 3.18
1969 2261 7.974675 TGTTACACCACGAATAGTACTAGTAC 58.025 38.462 23.03 23.03 36.35 2.73
2062 2354 3.744214 CGGTATTCATTGCCAAGCCTAGA 60.744 47.826 0.00 0.00 0.00 2.43
2069 2361 1.279496 TGCCAAGCCTAGACACATCT 58.721 50.000 0.00 0.00 39.15 2.90
2072 2364 1.065926 CCAAGCCTAGACACATCTGCA 60.066 52.381 0.00 0.00 36.29 4.41
2125 2417 1.096416 TCGCTTCATCATGCATGCAA 58.904 45.000 26.68 9.94 31.70 4.08
2126 2418 1.473278 TCGCTTCATCATGCATGCAAA 59.527 42.857 26.68 16.55 31.70 3.68
2127 2419 2.100087 TCGCTTCATCATGCATGCAAAT 59.900 40.909 26.68 18.15 31.70 2.32
2128 2420 2.218530 CGCTTCATCATGCATGCAAATG 59.781 45.455 27.93 27.93 31.70 2.32
2236 2539 3.118038 GGAAAGCCAAACCCCTTTCTTTT 60.118 43.478 11.47 0.00 43.89 2.27
2254 2557 1.172180 TTTTCCAGAGGCGCAACCAG 61.172 55.000 10.83 0.00 43.14 4.00
2255 2558 3.551496 TTCCAGAGGCGCAACCAGG 62.551 63.158 10.83 4.05 43.14 4.45
2292 2598 1.377594 ATGTGCCGCTGATGAGCAA 60.378 52.632 4.68 0.00 46.62 3.91
2293 2599 1.374343 ATGTGCCGCTGATGAGCAAG 61.374 55.000 4.68 0.00 46.62 4.01
2294 2600 2.437180 TGCCGCTGATGAGCAAGG 60.437 61.111 4.68 0.00 46.62 3.61
2300 2606 0.814812 GCTGATGAGCAAGGAGGAGC 60.815 60.000 0.00 0.00 45.46 4.70
2301 2607 0.179051 CTGATGAGCAAGGAGGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
2436 2757 2.224646 ACAAGAGAGCACCTTTTCCTCC 60.225 50.000 0.00 0.00 0.00 4.30
2452 2773 1.611977 CCTCCGGGGTCTTTGAAAAAC 59.388 52.381 0.00 0.00 0.00 2.43
2460 2781 2.459934 GTCTTTGAAAAACACAGGGCG 58.540 47.619 0.00 0.00 0.00 6.13
2621 2948 2.039613 GGAGAATAATGGAGGGCCTCAG 59.960 54.545 33.27 0.00 34.31 3.35
2622 2949 1.423161 AGAATAATGGAGGGCCTCAGC 59.577 52.381 33.27 18.39 38.76 4.26
2623 2950 0.109342 AATAATGGAGGGCCTCAGCG 59.891 55.000 33.27 0.00 41.24 5.18
2662 2989 4.093952 CTGCGGCTGCTGTTTCCG 62.094 66.667 20.27 0.00 45.46 4.30
2663 2990 4.617520 TGCGGCTGCTGTTTCCGA 62.618 61.111 20.27 0.00 45.53 4.55
2757 3084 3.319689 ACGGTAAACATTGGGAAAGTTGG 59.680 43.478 0.00 0.00 0.00 3.77
2761 3088 4.937201 AAACATTGGGAAAGTTGGTCTC 57.063 40.909 0.00 0.00 0.00 3.36
2772 3099 6.442112 GGAAAGTTGGTCTCAAGAAGAAATG 58.558 40.000 0.00 0.00 35.21 2.32
2799 3126 9.663904 TCTTCTTTTGTCTTCAATTATTTCACG 57.336 29.630 0.00 0.00 33.32 4.35
2803 3130 5.940192 TGTCTTCAATTATTTCACGCACT 57.060 34.783 0.00 0.00 0.00 4.40
2805 3132 6.142139 TGTCTTCAATTATTTCACGCACTTG 58.858 36.000 0.00 0.00 0.00 3.16
2808 3135 7.801315 GTCTTCAATTATTTCACGCACTTGTTA 59.199 33.333 0.00 0.00 0.00 2.41
2809 3136 8.511321 TCTTCAATTATTTCACGCACTTGTTAT 58.489 29.630 0.00 0.00 0.00 1.89
2843 3173 1.515952 TGCTTGCGCACACACAAAC 60.516 52.632 11.12 0.00 42.25 2.93
2862 3193 6.559042 CAAACTGTTTGTTGATTGTCTGAC 57.441 37.500 21.95 0.00 39.13 3.51
2875 3206 1.470494 TGTCTGACTTAGCTGAGCTCG 59.530 52.381 11.68 6.14 40.44 5.03
2886 3217 0.450583 CTGAGCTCGTACGTAGCCAA 59.549 55.000 25.65 17.41 41.02 4.52
2887 3218 0.169672 TGAGCTCGTACGTAGCCAAC 59.830 55.000 25.65 19.76 41.02 3.77
2889 3220 1.667724 GAGCTCGTACGTAGCCAACTA 59.332 52.381 25.65 2.46 41.02 2.24
2892 3223 0.734889 TCGTACGTAGCCAACTAGCC 59.265 55.000 16.05 0.00 0.00 3.93
2893 3224 0.452987 CGTACGTAGCCAACTAGCCA 59.547 55.000 7.22 0.00 0.00 4.75
2912 3247 3.433598 GCCACTTCATGTCCCTAGCATTA 60.434 47.826 0.00 0.00 0.00 1.90
2927 3262 5.940470 CCTAGCATTAGTCAACCAGAGTTTT 59.060 40.000 0.00 0.00 32.45 2.43
2943 3278 9.143155 ACCAGAGTTTTGAATATTTTAACTGGT 57.857 29.630 0.00 0.00 45.09 4.00
2989 3324 6.562608 ACCATACTACCATCCAATCCACTATT 59.437 38.462 0.00 0.00 0.00 1.73
2990 3325 6.881065 CCATACTACCATCCAATCCACTATTG 59.119 42.308 0.00 0.00 43.99 1.90
2999 3341 3.252701 CCAATCCACTATTGCTGCATCTC 59.747 47.826 1.84 0.00 43.18 2.75
3011 3353 2.416836 GCTGCATCTCGTGGTAGTTGTA 60.417 50.000 0.00 0.00 0.00 2.41
3012 3354 3.179830 CTGCATCTCGTGGTAGTTGTAC 58.820 50.000 0.00 0.00 0.00 2.90
3013 3355 2.823747 TGCATCTCGTGGTAGTTGTACT 59.176 45.455 0.00 0.00 0.00 2.73
3099 3441 8.272545 ACTGTTGTATATCACTGTAGACGTTA 57.727 34.615 0.00 0.00 0.00 3.18
3189 3556 1.086696 CAAGGACAATGTAGCCCACG 58.913 55.000 0.00 0.00 0.00 4.94
3257 3657 1.671850 CCTAGCACAGTTGTACCCGTG 60.672 57.143 0.00 0.00 0.00 4.94
3269 3672 0.180171 TACCCGTGGGCATTCATGAG 59.820 55.000 4.41 0.00 39.32 2.90
3275 3678 2.549754 CGTGGGCATTCATGAGGATAAC 59.450 50.000 0.00 0.00 0.00 1.89
3278 3681 2.555757 GGGCATTCATGAGGATAACAGC 59.444 50.000 0.00 0.00 0.00 4.40
3291 3694 3.248602 GGATAACAGCGCAGGTAGAATTG 59.751 47.826 11.47 0.00 35.08 2.32
3323 3730 2.287849 GCTTTTCTGGTGGTTTGCTCTC 60.288 50.000 0.00 0.00 0.00 3.20
3392 3804 9.705103 AACACATAAATAGTGGTAGGAGTACTA 57.295 33.333 0.00 0.00 41.21 1.82
3414 3835 3.383185 AGTGTACTAGCTCAGATCCTTGC 59.617 47.826 0.00 0.00 0.00 4.01
3439 3860 7.461918 CGGTTTTACTGAAGCTAGGAAATTAC 58.538 38.462 0.00 0.00 30.91 1.89
3440 3861 7.333672 CGGTTTTACTGAAGCTAGGAAATTACT 59.666 37.037 0.00 0.00 30.91 2.24
3441 3862 8.451748 GGTTTTACTGAAGCTAGGAAATTACTG 58.548 37.037 0.00 0.00 30.91 2.74
3442 3863 9.000486 GTTTTACTGAAGCTAGGAAATTACTGT 58.000 33.333 0.00 0.00 30.91 3.55
3459 3880 9.784531 AAATTACTGTAGATATCATCCAACAGG 57.215 33.333 18.26 0.00 43.07 4.00
3493 3933 8.469200 CATGCCAAGGAAATAAATTTGAGAGTA 58.531 33.333 0.00 0.00 0.00 2.59
3525 3965 5.510009 GCAGGACTACTTATCTCTTTAGGCC 60.510 48.000 0.00 0.00 39.75 5.19
3526 3966 4.828387 AGGACTACTTATCTCTTTAGGCCG 59.172 45.833 0.00 0.00 43.66 6.13
3527 3967 4.583907 GGACTACTTATCTCTTTAGGCCGT 59.416 45.833 0.00 0.00 29.91 5.68
3528 3968 5.767168 GGACTACTTATCTCTTTAGGCCGTA 59.233 44.000 0.00 0.00 29.91 4.02
3562 4002 3.960102 TCAATGGATGCAGGAATTTACCC 59.040 43.478 0.00 0.00 0.00 3.69
3574 4014 3.576550 GGAATTTACCCCTTGACTGCAAA 59.423 43.478 0.00 0.00 32.73 3.68
3613 4053 4.397417 AGCAGATAATCAAACCAGAAGCAC 59.603 41.667 0.00 0.00 0.00 4.40
3614 4054 4.156556 GCAGATAATCAAACCAGAAGCACA 59.843 41.667 0.00 0.00 0.00 4.57
3615 4055 5.634896 CAGATAATCAAACCAGAAGCACAC 58.365 41.667 0.00 0.00 0.00 3.82
3650 4090 2.330254 TTGCGGTGAAGAAGCAAGG 58.670 52.632 0.00 0.00 44.66 3.61
3651 4091 0.179032 TTGCGGTGAAGAAGCAAGGA 60.179 50.000 0.00 0.00 44.66 3.36
3667 4119 0.905337 AGGACCCAAGGAGAAGGACG 60.905 60.000 0.00 0.00 0.00 4.79
3772 4224 3.267860 GCGAAGGGAGCTGCATCG 61.268 66.667 22.40 22.40 36.64 3.84
3861 4319 1.966451 CCAGGGCGTCAACTTGGAC 60.966 63.158 0.00 0.00 34.42 4.02
3868 4326 0.969894 CGTCAACTTGGACCTCTCCT 59.030 55.000 0.00 0.00 37.48 3.69
3885 4343 0.467384 CCTTGTCCATCTGCGGATCT 59.533 55.000 4.63 0.00 37.41 2.75
3886 4344 1.134280 CCTTGTCCATCTGCGGATCTT 60.134 52.381 4.63 0.00 37.41 2.40
3887 4345 2.103094 CCTTGTCCATCTGCGGATCTTA 59.897 50.000 4.63 0.00 37.41 2.10
3888 4346 3.244353 CCTTGTCCATCTGCGGATCTTAT 60.244 47.826 4.63 0.00 37.41 1.73
3938 4400 3.558006 CGATCTATCTGTCTGTCACTCGT 59.442 47.826 0.00 0.00 0.00 4.18
3996 4458 5.681639 CAGGTTGTTAGGTTAGGATTAGGG 58.318 45.833 0.00 0.00 0.00 3.53
4012 4474 5.296035 GGATTAGGGGTTCAATGACGTTTAG 59.704 44.000 0.00 0.00 0.00 1.85
4013 4475 5.486735 TTAGGGGTTCAATGACGTTTAGA 57.513 39.130 0.00 0.00 0.00 2.10
4014 4476 3.939066 AGGGGTTCAATGACGTTTAGAG 58.061 45.455 0.00 0.00 0.00 2.43
4015 4477 3.007635 GGGGTTCAATGACGTTTAGAGG 58.992 50.000 0.00 0.00 0.00 3.69
4018 4480 4.562963 GGGTTCAATGACGTTTAGAGGAGT 60.563 45.833 0.00 0.00 0.00 3.85
4051 4513 3.500343 ACCAAGTTGCAAAGGCTATCTT 58.500 40.909 0.00 0.00 41.91 2.40
4052 4514 3.507622 ACCAAGTTGCAAAGGCTATCTTC 59.492 43.478 0.00 0.00 41.91 2.87
4053 4515 3.507233 CCAAGTTGCAAAGGCTATCTTCA 59.493 43.478 0.00 0.00 41.91 3.02
4054 4516 4.380233 CCAAGTTGCAAAGGCTATCTTCAG 60.380 45.833 0.00 0.00 41.91 3.02
4055 4517 2.751806 AGTTGCAAAGGCTATCTTCAGC 59.248 45.455 0.00 0.00 41.91 4.26
4056 4518 2.751806 GTTGCAAAGGCTATCTTCAGCT 59.248 45.455 0.00 0.00 41.50 4.24
4057 4519 3.912496 TGCAAAGGCTATCTTCAGCTA 57.088 42.857 0.00 0.00 41.50 3.32
4058 4520 3.801698 TGCAAAGGCTATCTTCAGCTAG 58.198 45.455 0.00 0.00 41.50 3.42
4059 4521 3.198635 TGCAAAGGCTATCTTCAGCTAGT 59.801 43.478 0.00 0.00 41.50 2.57
4060 4522 4.405680 TGCAAAGGCTATCTTCAGCTAGTA 59.594 41.667 0.00 0.00 41.50 1.82
4064 4526 4.547671 AGGCTATCTTCAGCTAGTACCAA 58.452 43.478 0.00 0.00 41.50 3.67
4065 4527 4.962995 AGGCTATCTTCAGCTAGTACCAAA 59.037 41.667 0.00 0.00 41.50 3.28
4066 4528 5.069781 AGGCTATCTTCAGCTAGTACCAAAG 59.930 44.000 0.00 0.00 41.50 2.77
4127 4638 1.895131 TCTGCATCTTTTCCTTTGCCC 59.105 47.619 0.00 0.00 34.20 5.36
4133 4644 1.684450 TCTTTTCCTTTGCCCGAAACC 59.316 47.619 0.00 0.00 0.00 3.27
4216 4727 2.799412 GCGAGATCAGCAGTATTCCTTG 59.201 50.000 8.11 0.00 34.19 3.61
4217 4728 2.799412 CGAGATCAGCAGTATTCCTTGC 59.201 50.000 0.00 0.00 40.57 4.01
4218 4729 3.739209 CGAGATCAGCAGTATTCCTTGCA 60.739 47.826 0.00 0.00 42.67 4.08
4234 7915 0.740149 TGCAGGTCAAAAGTGTGCTG 59.260 50.000 0.00 0.00 35.11 4.41
4260 7941 5.412594 TGCCATGATGTTGTTTCTACTTCTC 59.587 40.000 0.00 0.00 0.00 2.87
4261 7942 5.163713 GCCATGATGTTGTTTCTACTTCTCC 60.164 44.000 0.00 0.00 0.00 3.71
4262 7943 6.176183 CCATGATGTTGTTTCTACTTCTCCT 58.824 40.000 0.00 0.00 0.00 3.69
4274 7963 2.354259 ACTTCTCCTACGTAGTGACCG 58.646 52.381 20.73 13.19 45.73 4.79
4390 8089 3.257393 GAGCGGCCAGAGAATATATGTG 58.743 50.000 2.24 0.00 0.00 3.21
4428 8127 0.811616 GGCTACATCACCTCCTTGCG 60.812 60.000 0.00 0.00 0.00 4.85
4430 8129 1.927895 CTACATCACCTCCTTGCGTC 58.072 55.000 0.00 0.00 0.00 5.19
4470 8171 2.435410 CCGCATGCAGCACAGAGA 60.435 61.111 19.57 0.00 46.13 3.10
4471 8172 2.461945 CCGCATGCAGCACAGAGAG 61.462 63.158 19.57 0.00 46.13 3.20
4522 8283 2.783440 CTTCGTGCAAGCCGAAAAC 58.217 52.632 11.19 0.00 43.03 2.43
4539 8300 5.410924 CGAAAACTGTCATGATCACTCCTA 58.589 41.667 0.00 0.00 0.00 2.94
4552 8313 2.947652 TCACTCCTACTGCCGTATACAC 59.052 50.000 3.32 0.00 0.00 2.90
4554 8315 4.132336 CACTCCTACTGCCGTATACACTA 58.868 47.826 3.32 0.00 0.00 2.74
4555 8316 4.213694 CACTCCTACTGCCGTATACACTAG 59.786 50.000 3.32 0.12 0.00 2.57
4557 8318 4.132336 TCCTACTGCCGTATACACTAGTG 58.868 47.826 21.44 21.44 0.00 2.74
4558 8319 2.865343 ACTGCCGTATACACTAGTGC 57.135 50.000 22.90 7.46 0.00 4.40
4562 8327 3.927854 TGCCGTATACACTAGTGCAAAA 58.072 40.909 22.90 6.53 0.00 2.44
4627 8398 4.142816 CGATTTGACCAGGCTTCACTTAAG 60.143 45.833 0.00 0.00 38.32 1.85
4628 8399 4.431416 TTTGACCAGGCTTCACTTAAGA 57.569 40.909 10.09 0.00 37.38 2.10
4629 8400 3.402628 TGACCAGGCTTCACTTAAGAC 57.597 47.619 10.09 0.00 44.44 3.01
4642 8413 5.925509 TCACTTAAGACTTAACACCTGCTT 58.074 37.500 10.09 0.00 0.00 3.91
4643 8414 5.758296 TCACTTAAGACTTAACACCTGCTTG 59.242 40.000 10.09 0.00 0.00 4.01
4657 8428 0.104671 TGCTTGCTTGCCCTGAAAAC 59.895 50.000 0.00 0.00 0.00 2.43
4702 8473 9.442047 AAAGAAGAGAACAACCAGATACTAATG 57.558 33.333 0.00 0.00 0.00 1.90
4706 8477 7.324178 AGAGAACAACCAGATACTAATGACAC 58.676 38.462 0.00 0.00 0.00 3.67
4752 10155 0.539051 ATGAGTGCTACTGGCCAGTC 59.461 55.000 41.00 27.58 42.54 3.51
4763 10166 1.759445 CTGGCCAGTCAGCAGTACTAT 59.241 52.381 25.53 0.00 0.00 2.12
4793 10196 1.739067 GACGTGGAAATTCAGAGGGG 58.261 55.000 0.00 0.00 0.00 4.79
4796 10199 1.004277 CGTGGAAATTCAGAGGGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
4814 10217 4.081917 GGGGAAAGCGATATTTGGTGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
4816 10219 6.106003 GGGAAAGCGATATTTGGTGAAAAAT 58.894 36.000 0.00 0.00 34.24 1.82
4818 10221 6.035975 GGAAAGCGATATTTGGTGAAAAATGG 59.964 38.462 0.00 0.00 32.16 3.16
4856 10259 4.272489 TCCCAAGATTATGAAACTGGCAG 58.728 43.478 14.16 14.16 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 6.771749 TCCGTTTTACCACCTGAAAATAAAGA 59.228 34.615 0.00 0.00 0.00 2.52
108 109 2.276391 CTCAGATCCCCATCCATCCAT 58.724 52.381 0.00 0.00 0.00 3.41
109 110 1.738474 CTCAGATCCCCATCCATCCA 58.262 55.000 0.00 0.00 0.00 3.41
137 138 2.859273 GATGCACCGGTCCAGTCCAG 62.859 65.000 2.59 0.00 0.00 3.86
138 139 2.927856 ATGCACCGGTCCAGTCCA 60.928 61.111 2.59 0.00 0.00 4.02
139 140 2.125106 GATGCACCGGTCCAGTCC 60.125 66.667 2.59 0.00 0.00 3.85
140 141 2.125106 GGATGCACCGGTCCAGTC 60.125 66.667 2.59 1.36 34.57 3.51
173 174 0.322546 GAGGCGAGGGAACACCAAAT 60.323 55.000 0.00 0.00 43.89 2.32
190 191 4.244802 GAGTCGAGGCGAGGCGAG 62.245 72.222 0.00 0.00 36.23 5.03
194 195 2.902846 ATCCGAGTCGAGGCGAGG 60.903 66.667 15.64 0.00 36.23 4.63
195 196 2.329690 CATCCGAGTCGAGGCGAG 59.670 66.667 15.64 0.00 36.23 5.03
196 197 3.889044 GCATCCGAGTCGAGGCGA 61.889 66.667 15.64 2.51 28.87 5.54
197 198 4.193334 TGCATCCGAGTCGAGGCG 62.193 66.667 15.64 0.00 42.36 5.52
198 199 2.583593 GTGCATCCGAGTCGAGGC 60.584 66.667 15.64 14.43 39.94 4.70
199 200 1.517257 GTGTGCATCCGAGTCGAGG 60.517 63.158 15.64 3.84 0.00 4.63
200 201 0.109086 AAGTGTGCATCCGAGTCGAG 60.109 55.000 15.64 4.27 0.00 4.04
201 202 0.388520 CAAGTGTGCATCCGAGTCGA 60.389 55.000 15.64 0.07 0.00 4.20
202 203 2.073307 CAAGTGTGCATCCGAGTCG 58.927 57.895 5.29 5.29 0.00 4.18
226 227 1.895707 GAGTGTTGGTGCTGCTGCT 60.896 57.895 17.00 0.00 40.48 4.24
227 228 2.641559 GAGTGTTGGTGCTGCTGC 59.358 61.111 8.89 8.89 40.20 5.25
228 229 1.228063 AGGAGTGTTGGTGCTGCTG 60.228 57.895 0.00 0.00 32.20 4.41
229 230 1.072159 GAGGAGTGTTGGTGCTGCT 59.928 57.895 0.00 0.00 36.11 4.24
230 231 1.968540 GGAGGAGTGTTGGTGCTGC 60.969 63.158 0.00 0.00 0.00 5.25
231 232 0.886490 GTGGAGGAGTGTTGGTGCTG 60.886 60.000 0.00 0.00 0.00 4.41
232 233 1.056700 AGTGGAGGAGTGTTGGTGCT 61.057 55.000 0.00 0.00 0.00 4.40
233 234 0.603975 GAGTGGAGGAGTGTTGGTGC 60.604 60.000 0.00 0.00 0.00 5.01
234 235 0.035458 GGAGTGGAGGAGTGTTGGTG 59.965 60.000 0.00 0.00 0.00 4.17
235 236 0.399949 TGGAGTGGAGGAGTGTTGGT 60.400 55.000 0.00 0.00 0.00 3.67
236 237 0.322975 CTGGAGTGGAGGAGTGTTGG 59.677 60.000 0.00 0.00 0.00 3.77
237 238 1.051812 ACTGGAGTGGAGGAGTGTTG 58.948 55.000 0.00 0.00 0.00 3.33
239 240 0.188587 TCACTGGAGTGGAGGAGTGT 59.811 55.000 6.94 0.00 45.65 3.55
240 241 1.001406 GTTCACTGGAGTGGAGGAGTG 59.999 57.143 6.94 0.00 45.65 3.51
241 242 1.133009 AGTTCACTGGAGTGGAGGAGT 60.133 52.381 6.94 0.00 45.65 3.85
242 243 1.638529 AGTTCACTGGAGTGGAGGAG 58.361 55.000 6.94 0.00 45.65 3.69
244 245 1.417890 ACAAGTTCACTGGAGTGGAGG 59.582 52.381 6.94 0.00 45.65 4.30
247 248 2.643551 ACAACAAGTTCACTGGAGTGG 58.356 47.619 6.94 0.00 45.65 4.00
264 288 1.949525 GACAGCAGCTTGAAGGAACAA 59.050 47.619 0.00 0.00 0.00 2.83
273 297 0.673022 GAGGACAGGACAGCAGCTTG 60.673 60.000 0.00 0.00 0.00 4.01
276 300 2.267324 GGAGGACAGGACAGCAGC 59.733 66.667 0.00 0.00 0.00 5.25
283 307 0.471780 TGAACAGCAGGAGGACAGGA 60.472 55.000 0.00 0.00 0.00 3.86
287 311 0.946221 CGTGTGAACAGCAGGAGGAC 60.946 60.000 0.00 0.00 0.00 3.85
288 312 1.112916 TCGTGTGAACAGCAGGAGGA 61.113 55.000 0.00 0.00 0.00 3.71
290 314 1.581934 TTTCGTGTGAACAGCAGGAG 58.418 50.000 0.00 0.00 32.71 3.69
291 315 2.254546 ATTTCGTGTGAACAGCAGGA 57.745 45.000 0.00 0.00 32.71 3.86
292 316 3.664276 CGTTATTTCGTGTGAACAGCAGG 60.664 47.826 0.00 0.00 32.71 4.85
293 317 3.183574 TCGTTATTTCGTGTGAACAGCAG 59.816 43.478 0.00 0.00 32.71 4.24
294 318 3.124560 TCGTTATTTCGTGTGAACAGCA 58.875 40.909 0.00 0.00 32.71 4.41
296 320 4.151689 ACCATCGTTATTTCGTGTGAACAG 59.848 41.667 0.00 0.00 32.71 3.16
297 321 4.059511 ACCATCGTTATTTCGTGTGAACA 58.940 39.130 0.00 0.00 32.71 3.18
298 322 4.657075 ACCATCGTTATTTCGTGTGAAC 57.343 40.909 0.00 0.00 32.71 3.18
299 323 5.444983 CAAACCATCGTTATTTCGTGTGAA 58.555 37.500 0.00 0.00 0.00 3.18
300 324 4.083749 CCAAACCATCGTTATTTCGTGTGA 60.084 41.667 0.00 0.00 0.00 3.58
301 325 4.155449 CCAAACCATCGTTATTTCGTGTG 58.845 43.478 0.00 0.00 0.00 3.82
302 326 3.365565 GCCAAACCATCGTTATTTCGTGT 60.366 43.478 0.00 0.00 0.00 4.49
303 327 3.119990 AGCCAAACCATCGTTATTTCGTG 60.120 43.478 0.00 0.00 0.00 4.35
304 328 3.078837 AGCCAAACCATCGTTATTTCGT 58.921 40.909 0.00 0.00 0.00 3.85
305 329 3.126171 TCAGCCAAACCATCGTTATTTCG 59.874 43.478 0.00 0.00 0.00 3.46
306 330 4.695217 TCAGCCAAACCATCGTTATTTC 57.305 40.909 0.00 0.00 0.00 2.17
307 331 5.659440 AATCAGCCAAACCATCGTTATTT 57.341 34.783 0.00 0.00 0.00 1.40
308 332 5.659440 AAATCAGCCAAACCATCGTTATT 57.341 34.783 0.00 0.00 0.00 1.40
309 333 5.410067 CAAAATCAGCCAAACCATCGTTAT 58.590 37.500 0.00 0.00 0.00 1.89
310 334 4.804108 CAAAATCAGCCAAACCATCGTTA 58.196 39.130 0.00 0.00 0.00 3.18
311 335 3.652274 CAAAATCAGCCAAACCATCGTT 58.348 40.909 0.00 0.00 0.00 3.85
312 336 2.610232 GCAAAATCAGCCAAACCATCGT 60.610 45.455 0.00 0.00 0.00 3.73
313 337 1.994779 GCAAAATCAGCCAAACCATCG 59.005 47.619 0.00 0.00 0.00 3.84
314 338 2.738314 GTGCAAAATCAGCCAAACCATC 59.262 45.455 0.00 0.00 0.00 3.51
315 339 2.104451 TGTGCAAAATCAGCCAAACCAT 59.896 40.909 0.00 0.00 0.00 3.55
316 340 1.483827 TGTGCAAAATCAGCCAAACCA 59.516 42.857 0.00 0.00 0.00 3.67
317 341 2.237393 TGTGCAAAATCAGCCAAACC 57.763 45.000 0.00 0.00 0.00 3.27
318 342 3.391965 TCATGTGCAAAATCAGCCAAAC 58.608 40.909 0.00 0.00 0.00 2.93
319 343 3.747854 TCATGTGCAAAATCAGCCAAA 57.252 38.095 0.00 0.00 0.00 3.28
320 344 3.747854 TTCATGTGCAAAATCAGCCAA 57.252 38.095 0.00 0.00 0.00 4.52
321 345 3.321396 TCTTTCATGTGCAAAATCAGCCA 59.679 39.130 0.00 0.00 0.00 4.75
322 346 3.916761 TCTTTCATGTGCAAAATCAGCC 58.083 40.909 0.00 0.00 0.00 4.85
323 347 3.367025 GCTCTTTCATGTGCAAAATCAGC 59.633 43.478 0.00 0.00 0.00 4.26
324 348 3.606777 CGCTCTTTCATGTGCAAAATCAG 59.393 43.478 0.00 0.00 0.00 2.90
325 349 3.004629 ACGCTCTTTCATGTGCAAAATCA 59.995 39.130 0.00 0.00 0.00 2.57
326 350 3.568538 ACGCTCTTTCATGTGCAAAATC 58.431 40.909 0.00 0.00 0.00 2.17
327 351 3.568538 GACGCTCTTTCATGTGCAAAAT 58.431 40.909 0.00 0.00 0.00 1.82
328 352 2.601979 CGACGCTCTTTCATGTGCAAAA 60.602 45.455 0.00 0.00 0.00 2.44
329 353 1.069973 CGACGCTCTTTCATGTGCAAA 60.070 47.619 0.00 0.00 0.00 3.68
330 354 0.512518 CGACGCTCTTTCATGTGCAA 59.487 50.000 0.00 0.00 0.00 4.08
331 355 1.900585 GCGACGCTCTTTCATGTGCA 61.901 55.000 13.73 0.00 0.00 4.57
332 356 1.225854 GCGACGCTCTTTCATGTGC 60.226 57.895 13.73 0.00 0.00 4.57
333 357 1.629013 TAGCGACGCTCTTTCATGTG 58.371 50.000 28.21 0.00 40.44 3.21
334 358 2.586258 ATAGCGACGCTCTTTCATGT 57.414 45.000 28.21 0.98 40.44 3.21
335 359 3.933155 AAATAGCGACGCTCTTTCATG 57.067 42.857 28.21 0.00 40.44 3.07
336 360 4.025647 GCTAAAATAGCGACGCTCTTTCAT 60.026 41.667 28.21 16.43 42.62 2.57
337 361 3.306166 GCTAAAATAGCGACGCTCTTTCA 59.694 43.478 28.21 14.37 42.62 2.69
338 362 3.851422 GCTAAAATAGCGACGCTCTTTC 58.149 45.455 28.21 13.08 42.62 2.62
339 363 3.927552 GCTAAAATAGCGACGCTCTTT 57.072 42.857 28.21 25.06 42.62 2.52
350 374 5.225949 CGCTCTTCTTTTTGCGCTAAAATAG 59.774 40.000 25.70 23.36 41.85 1.73
351 375 5.086058 CGCTCTTCTTTTTGCGCTAAAATA 58.914 37.500 25.70 17.95 41.85 1.40
352 376 3.914364 CGCTCTTCTTTTTGCGCTAAAAT 59.086 39.130 25.70 0.00 41.85 1.82
353 377 3.296628 CGCTCTTCTTTTTGCGCTAAAA 58.703 40.909 24.38 24.38 41.85 1.52
354 378 2.916111 CGCTCTTCTTTTTGCGCTAAA 58.084 42.857 12.99 12.99 41.85 1.85
355 379 2.594529 CGCTCTTCTTTTTGCGCTAA 57.405 45.000 9.73 3.97 41.85 3.09
360 384 3.179048 ACAACAACGCTCTTCTTTTTGC 58.821 40.909 0.00 0.00 0.00 3.68
361 385 5.761818 AAACAACAACGCTCTTCTTTTTG 57.238 34.783 0.00 0.00 0.00 2.44
362 386 6.034577 GCTAAAACAACAACGCTCTTCTTTTT 59.965 34.615 0.00 0.00 0.00 1.94
365 389 4.598062 GCTAAAACAACAACGCTCTTCTT 58.402 39.130 0.00 0.00 0.00 2.52
367 391 2.964768 CGCTAAAACAACAACGCTCTTC 59.035 45.455 0.00 0.00 0.00 2.87
370 394 1.042475 GCGCTAAAACAACAACGCTC 58.958 50.000 0.00 0.00 42.81 5.03
372 396 1.192793 TTGCGCTAAAACAACAACGC 58.807 45.000 9.73 0.00 46.05 4.84
373 397 3.833171 CTTTTGCGCTAAAACAACAACG 58.167 40.909 17.31 0.63 34.66 4.10
390 452 3.016031 TGTCTCACACACACATGCTTTT 58.984 40.909 0.00 0.00 0.00 2.27
408 475 2.262915 CGGAGCTCCCTGTGTGTC 59.737 66.667 27.20 0.00 0.00 3.67
412 479 0.970937 TCTAACCGGAGCTCCCTGTG 60.971 60.000 27.20 14.98 32.33 3.66
413 480 0.252103 TTCTAACCGGAGCTCCCTGT 60.252 55.000 27.20 20.68 33.45 4.00
429 496 7.141363 CGAACACCTCAAGAAAAATTCATTCT 58.859 34.615 1.63 1.63 38.75 2.40
435 502 5.130350 TCTCCGAACACCTCAAGAAAAATT 58.870 37.500 0.00 0.00 0.00 1.82
437 504 4.127171 CTCTCCGAACACCTCAAGAAAAA 58.873 43.478 0.00 0.00 0.00 1.94
439 506 2.698797 ACTCTCCGAACACCTCAAGAAA 59.301 45.455 0.00 0.00 0.00 2.52
440 507 2.317040 ACTCTCCGAACACCTCAAGAA 58.683 47.619 0.00 0.00 0.00 2.52
441 508 1.996798 ACTCTCCGAACACCTCAAGA 58.003 50.000 0.00 0.00 0.00 3.02
442 509 3.082548 TCTACTCTCCGAACACCTCAAG 58.917 50.000 0.00 0.00 0.00 3.02
443 510 3.082548 CTCTACTCTCCGAACACCTCAA 58.917 50.000 0.00 0.00 0.00 3.02
444 511 2.305052 TCTCTACTCTCCGAACACCTCA 59.695 50.000 0.00 0.00 0.00 3.86
462 558 4.336433 CCAACATCTCTCTGTCTCTCTCTC 59.664 50.000 0.00 0.00 0.00 3.20
472 568 1.088340 CGCCAGCCAACATCTCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
485 581 3.316868 GGATCTACTCCTATATCGCCAGC 59.683 52.174 0.00 0.00 41.29 4.85
498 595 2.486191 CCAGCCCAATGTGGATCTACTC 60.486 54.545 10.82 0.00 40.96 2.59
591 691 2.018086 AGAGGGGGAGGGAGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
593 693 0.996762 GAGAGAGGGGGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
598 698 0.998945 AGAGAGAGAGAGGGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
599 699 0.478507 GAGAGAGAGAGAGGGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
600 700 1.421646 GAGAGAGAGAGAGAGGGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
601 701 1.010793 AGAGAGAGAGAGAGAGGGGGA 59.989 57.143 0.00 0.00 0.00 4.81
602 702 1.143684 CAGAGAGAGAGAGAGAGGGGG 59.856 61.905 0.00 0.00 0.00 5.40
603 703 1.143684 CCAGAGAGAGAGAGAGAGGGG 59.856 61.905 0.00 0.00 0.00 4.79
604 704 1.846439 ACCAGAGAGAGAGAGAGAGGG 59.154 57.143 0.00 0.00 0.00 4.30
605 705 3.492656 CGTACCAGAGAGAGAGAGAGAGG 60.493 56.522 0.00 0.00 0.00 3.69
607 707 3.101437 ACGTACCAGAGAGAGAGAGAGA 58.899 50.000 0.00 0.00 0.00 3.10
626 726 5.753438 AGACATTGTACTGCCACAATATACG 59.247 40.000 7.78 0.00 45.18 3.06
627 727 6.017934 CCAGACATTGTACTGCCACAATATAC 60.018 42.308 7.78 4.27 45.18 1.47
628 728 6.054941 CCAGACATTGTACTGCCACAATATA 58.945 40.000 7.78 0.00 45.18 0.86
629 729 4.883585 CCAGACATTGTACTGCCACAATAT 59.116 41.667 7.78 0.00 45.18 1.28
630 730 4.019771 TCCAGACATTGTACTGCCACAATA 60.020 41.667 7.78 0.00 45.18 1.90
632 732 2.105649 TCCAGACATTGTACTGCCACAA 59.894 45.455 9.44 0.00 42.32 3.33
633 733 1.696884 TCCAGACATTGTACTGCCACA 59.303 47.619 9.44 0.00 33.40 4.17
760 860 0.877649 AGCTTGCGTCTGTCTGTGTG 60.878 55.000 0.00 0.00 0.00 3.82
761 861 0.598680 GAGCTTGCGTCTGTCTGTGT 60.599 55.000 0.00 0.00 0.00 3.72
762 862 0.319383 AGAGCTTGCGTCTGTCTGTG 60.319 55.000 0.00 0.00 0.00 3.66
763 863 1.248486 TAGAGCTTGCGTCTGTCTGT 58.752 50.000 0.00 0.00 0.00 3.41
783 883 2.224719 CCTTTGCATGGCTAGAGGCTAT 60.225 50.000 4.59 0.00 42.97 2.97
784 884 1.141657 CCTTTGCATGGCTAGAGGCTA 59.858 52.381 4.59 0.00 41.69 3.93
785 885 0.106819 CCTTTGCATGGCTAGAGGCT 60.107 55.000 4.59 0.00 41.69 4.58
786 886 0.107017 TCCTTTGCATGGCTAGAGGC 60.107 55.000 0.00 0.00 41.50 4.70
824 932 0.032540 CTTGGTTTCTTGCCTGTGCC 59.967 55.000 0.00 0.00 36.33 5.01
912 1021 1.039856 TGGCAAAAGACAAGAAGGCC 58.960 50.000 0.00 0.00 40.29 5.19
974 1083 2.107366 CCTCCTTCTCCTTCTCCTGTC 58.893 57.143 0.00 0.00 0.00 3.51
976 1085 2.387757 CTCCTCCTTCTCCTTCTCCTG 58.612 57.143 0.00 0.00 0.00 3.86
982 1107 2.360209 CCATCTCCTCCTCCTTCTCCTT 60.360 54.545 0.00 0.00 0.00 3.36
988 1113 0.267356 CTCCCCATCTCCTCCTCCTT 59.733 60.000 0.00 0.00 0.00 3.36
1013 1185 1.302832 ACGGCTTCCTGCTTCTTGG 60.303 57.895 0.00 0.00 42.39 3.61
1089 1261 0.818445 CTATGGCCTGCAGGAAGCTG 60.818 60.000 37.21 17.85 45.94 4.24
1143 1315 6.985653 TTGAGGAAGAAGAAGAAGAAGAGA 57.014 37.500 0.00 0.00 0.00 3.10
1189 1367 8.554835 AGAATAAGAAGAAGTAAAGGAGCAAC 57.445 34.615 0.00 0.00 0.00 4.17
1193 1371 8.874816 CCGAAAGAATAAGAAGAAGTAAAGGAG 58.125 37.037 0.00 0.00 0.00 3.69
1198 1376 9.333724 ACAAACCGAAAGAATAAGAAGAAGTAA 57.666 29.630 0.00 0.00 0.00 2.24
1200 1378 7.803279 ACAAACCGAAAGAATAAGAAGAAGT 57.197 32.000 0.00 0.00 0.00 3.01
1207 1385 9.083080 AGAAACAAAACAAACCGAAAGAATAAG 57.917 29.630 0.00 0.00 0.00 1.73
1210 1388 6.533723 GGAGAAACAAAACAAACCGAAAGAAT 59.466 34.615 0.00 0.00 0.00 2.40
1214 1392 4.496360 GGGAGAAACAAAACAAACCGAAA 58.504 39.130 0.00 0.00 0.00 3.46
1218 1396 2.816689 CGGGGAGAAACAAAACAAACC 58.183 47.619 0.00 0.00 0.00 3.27
1219 1397 2.198406 GCGGGGAGAAACAAAACAAAC 58.802 47.619 0.00 0.00 0.00 2.93
1224 1402 1.253100 GGATGCGGGGAGAAACAAAA 58.747 50.000 0.00 0.00 0.00 2.44
1239 1417 6.813649 TGTAGAACGAGAAGAGAAAATGGATG 59.186 38.462 0.00 0.00 0.00 3.51
1249 1427 2.082231 TCCGGTGTAGAACGAGAAGAG 58.918 52.381 0.00 0.00 0.00 2.85
1260 1439 0.532573 ACAGCAGACATCCGGTGTAG 59.467 55.000 0.00 3.35 42.36 2.74
1262 1441 1.004560 CACAGCAGACATCCGGTGT 60.005 57.895 0.00 5.22 44.23 4.16
1269 1448 4.388485 TCATGTACAAACACAGCAGACAT 58.612 39.130 0.00 0.00 38.78 3.06
1369 1584 8.519799 AAGAGATTAAAAGGAGACAAACAACA 57.480 30.769 0.00 0.00 0.00 3.33
1403 1618 2.355310 CCGCCCAGGTCACAATTAGTAA 60.355 50.000 0.00 0.00 34.51 2.24
1404 1619 1.208535 CCGCCCAGGTCACAATTAGTA 59.791 52.381 0.00 0.00 34.51 1.82
1423 1638 3.769536 CATCTGAAATTAACAACGCCCC 58.230 45.455 0.00 0.00 0.00 5.80
1428 1643 5.183904 AGGAGTGGCATCTGAAATTAACAAC 59.816 40.000 0.00 0.00 0.00 3.32
1464 1679 1.073763 TCCTTCACACCCATGACCTTG 59.926 52.381 0.00 0.00 0.00 3.61
1465 1680 1.352352 CTCCTTCACACCCATGACCTT 59.648 52.381 0.00 0.00 0.00 3.50
1497 1712 1.022735 GCAGATGGCTCTTGACATGG 58.977 55.000 0.00 0.00 43.07 3.66
1500 1715 0.035725 CCTGCAGATGGCTCTTGACA 60.036 55.000 17.39 0.00 45.15 3.58
1536 1751 4.100084 TGATGGGTGCAGGCGAGG 62.100 66.667 0.00 0.00 0.00 4.63
1565 1780 9.261180 CACGGAAGAATATAGTTCACACAATAT 57.739 33.333 0.00 0.00 0.00 1.28
1567 1782 6.037172 GCACGGAAGAATATAGTTCACACAAT 59.963 38.462 0.00 0.00 0.00 2.71
1574 1789 3.973657 TCCGCACGGAAGAATATAGTTC 58.026 45.455 9.81 0.00 42.05 3.01
1577 1792 2.557056 TCCTCCGCACGGAAGAATATAG 59.443 50.000 13.55 0.00 44.66 1.31
1589 1804 4.704833 TTGCAGGCTCCTCCGCAC 62.705 66.667 0.97 0.00 41.55 5.34
1608 1823 5.348997 GTGGAGCAGTCAGTCTTTGTATTAC 59.651 44.000 0.00 0.00 0.00 1.89
1626 1845 1.594331 AGAAGGAACAAACGTGGAGC 58.406 50.000 0.00 0.00 0.00 4.70
1678 1897 0.979665 TCTCACCTCTCTTGGCCTTG 59.020 55.000 3.32 0.00 0.00 3.61
1684 1903 2.674747 GCTTCAGCTCTCACCTCTCTTG 60.675 54.545 0.00 0.00 38.21 3.02
1699 1918 1.901591 TTGAAAGGGCAGAGCTTCAG 58.098 50.000 0.00 0.00 0.00 3.02
1777 1996 5.334724 GGTAAAACCTATGACTTCCGAGA 57.665 43.478 0.00 0.00 34.73 4.04
1867 2155 5.763876 AGACAATGGAACTAGGCTAAAGT 57.236 39.130 0.00 0.00 0.00 2.66
1868 2156 7.454260 AAAAGACAATGGAACTAGGCTAAAG 57.546 36.000 0.00 0.00 0.00 1.85
1909 2198 4.464069 TTGTTTTGGAGGTGAACTTTGG 57.536 40.909 0.00 0.00 0.00 3.28
2072 2364 0.464373 CCGGGTGTGATAAGCATGCT 60.464 55.000 16.30 16.30 0.00 3.79
2088 2380 1.369625 GATGAGTGGTTAGTTGCCGG 58.630 55.000 0.00 0.00 0.00 6.13
2125 2417 0.327259 TTGGAGCAGAGCAGAGCATT 59.673 50.000 0.00 0.00 0.00 3.56
2126 2418 0.327259 TTTGGAGCAGAGCAGAGCAT 59.673 50.000 0.00 0.00 0.00 3.79
2127 2419 0.109153 TTTTGGAGCAGAGCAGAGCA 59.891 50.000 0.00 0.00 0.00 4.26
2128 2420 0.803740 CTTTTGGAGCAGAGCAGAGC 59.196 55.000 0.00 0.00 0.00 4.09
2236 2539 1.600636 CTGGTTGCGCCTCTGGAAA 60.601 57.895 4.18 0.00 38.35 3.13
2248 2551 1.530013 CTCCTTTGCAGCCCTGGTTG 61.530 60.000 0.00 0.00 0.00 3.77
2250 2553 2.437897 CTCCTTTGCAGCCCTGGT 59.562 61.111 0.00 0.00 0.00 4.00
2254 2557 3.376918 GTGCCTCCTTTGCAGCCC 61.377 66.667 0.00 0.00 39.87 5.19
2255 2558 2.282745 AGTGCCTCCTTTGCAGCC 60.283 61.111 0.00 0.00 39.87 4.85
2300 2606 2.362889 GTGGGCACATGAAGGGGG 60.363 66.667 0.00 0.00 0.00 5.40
2301 2607 2.362889 GGTGGGCACATGAAGGGG 60.363 66.667 0.00 0.00 0.00 4.79
2386 2707 3.365472 AGGACACCAAAAAGCTTTGTCT 58.635 40.909 21.52 9.82 40.38 3.41
2404 2725 4.081420 GGTGCTCTCTTGTCAAGATTAGGA 60.081 45.833 15.60 13.76 36.82 2.94
2436 2757 2.223711 CCTGTGTTTTTCAAAGACCCCG 60.224 50.000 0.00 0.00 33.39 5.73
2489 2810 4.842091 CGCCTTGCATGCCTTCGC 62.842 66.667 16.68 10.46 0.00 4.70
2555 2879 7.504818 CATGTAGTAATCATCAATGCAGTACG 58.495 38.462 0.00 0.00 0.00 3.67
2623 2950 3.806667 AGCATCCCTCTGCCAGCC 61.807 66.667 0.00 0.00 43.33 4.85
2643 2970 3.663176 GAAACAGCAGCCGCAGCA 61.663 61.111 10.66 0.00 43.56 4.41
2649 2976 2.032681 AGGTCGGAAACAGCAGCC 59.967 61.111 0.00 0.00 0.00 4.85
2805 3132 9.249457 GCAAGCAATAAGGGAGATAAAAATAAC 57.751 33.333 0.00 0.00 0.00 1.89
2808 3135 6.507023 CGCAAGCAATAAGGGAGATAAAAAT 58.493 36.000 0.00 0.00 0.00 1.82
2809 3136 5.890334 CGCAAGCAATAAGGGAGATAAAAA 58.110 37.500 0.00 0.00 0.00 1.94
2843 3173 6.017605 AGCTAAGTCAGACAATCAACAAACAG 60.018 38.462 2.66 0.00 0.00 3.16
2856 3187 1.470890 ACGAGCTCAGCTAAGTCAGAC 59.529 52.381 15.40 0.00 39.88 3.51
2862 3193 2.600320 GCTACGTACGAGCTCAGCTAAG 60.600 54.545 24.41 0.00 39.88 2.18
2875 3206 1.475682 AGTGGCTAGTTGGCTACGTAC 59.524 52.381 0.00 0.00 46.02 3.67
2886 3217 1.958288 AGGGACATGAAGTGGCTAGT 58.042 50.000 0.00 0.00 35.58 2.57
2887 3218 2.224161 GCTAGGGACATGAAGTGGCTAG 60.224 54.545 0.00 0.00 35.58 3.42
2889 3220 0.543749 GCTAGGGACATGAAGTGGCT 59.456 55.000 0.00 0.00 35.58 4.75
2892 3223 5.028549 ACTAATGCTAGGGACATGAAGTG 57.971 43.478 0.00 0.00 0.00 3.16
2893 3224 4.716784 TGACTAATGCTAGGGACATGAAGT 59.283 41.667 0.00 0.00 31.04 3.01
2927 3262 9.703892 CACCATGAAAACCAGTTAAAATATTCA 57.296 29.630 0.00 0.00 0.00 2.57
2943 3278 4.558178 GTCATGACATTGCACCATGAAAA 58.442 39.130 21.07 0.48 45.41 2.29
2946 3281 2.093890 GGTCATGACATTGCACCATGA 58.906 47.619 26.47 13.14 42.84 3.07
2989 3324 0.608130 AACTACCACGAGATGCAGCA 59.392 50.000 4.07 0.00 0.00 4.41
2990 3325 1.002366 CAACTACCACGAGATGCAGC 58.998 55.000 0.00 0.00 0.00 5.25
3011 3353 3.689872 TTCCAGCTCCCTCATAGTAGT 57.310 47.619 0.00 0.00 0.00 2.73
3012 3354 3.900601 ACATTCCAGCTCCCTCATAGTAG 59.099 47.826 0.00 0.00 0.00 2.57
3013 3355 3.898123 GACATTCCAGCTCCCTCATAGTA 59.102 47.826 0.00 0.00 0.00 1.82
3099 3441 0.177141 ACACGCACCGGCAACTATAT 59.823 50.000 0.00 0.00 41.24 0.86
3257 3657 2.555757 GCTGTTATCCTCATGAATGCCC 59.444 50.000 0.00 0.00 0.00 5.36
3269 3672 2.596904 TTCTACCTGCGCTGTTATCC 57.403 50.000 9.73 0.00 0.00 2.59
3275 3678 0.804364 TTGCAATTCTACCTGCGCTG 59.196 50.000 9.73 8.47 41.63 5.18
3278 3681 0.796312 ACGTTGCAATTCTACCTGCG 59.204 50.000 0.59 0.00 41.63 5.18
3291 3694 4.403453 CACCAGAAAAGCTATAACGTTGC 58.597 43.478 11.99 5.97 0.00 4.17
3392 3804 3.383185 GCAAGGATCTGAGCTAGTACACT 59.617 47.826 0.00 0.00 0.00 3.55
3414 3835 6.496338 AATTTCCTAGCTTCAGTAAAACCG 57.504 37.500 0.00 0.00 0.00 4.44
3439 3860 5.305386 TGACCCTGTTGGATGATATCTACAG 59.695 44.000 3.98 9.15 39.43 2.74
3440 3861 5.215845 TGACCCTGTTGGATGATATCTACA 58.784 41.667 3.98 0.00 38.00 2.74
3441 3862 5.808366 TGACCCTGTTGGATGATATCTAC 57.192 43.478 3.98 0.00 38.00 2.59
3442 3863 6.823286 TTTGACCCTGTTGGATGATATCTA 57.177 37.500 3.98 0.00 38.00 1.98
3443 3864 5.715439 TTTGACCCTGTTGGATGATATCT 57.285 39.130 3.98 0.00 38.00 1.98
3450 3871 2.762327 GCATGATTTGACCCTGTTGGAT 59.238 45.455 0.00 0.00 38.00 3.41
3459 3880 3.959535 TTTCCTTGGCATGATTTGACC 57.040 42.857 0.00 0.00 29.16 4.02
3493 3933 4.528596 AGATAAGTAGTCCTGCTGTGTGTT 59.471 41.667 0.00 0.00 0.00 3.32
3525 3965 1.522676 CATTGATGGCAGCTACGTACG 59.477 52.381 15.01 15.01 0.00 3.67
3526 3966 1.867233 CCATTGATGGCAGCTACGTAC 59.133 52.381 3.69 0.00 41.75 3.67
3527 3967 2.238942 CCATTGATGGCAGCTACGTA 57.761 50.000 3.69 0.00 41.75 3.57
3528 3968 3.085208 CCATTGATGGCAGCTACGT 57.915 52.632 3.69 0.00 41.75 3.57
3574 4014 3.216800 TCTGCTGAGAACAAATGCAAGT 58.783 40.909 0.00 0.00 33.07 3.16
3587 4027 5.220815 GCTTCTGGTTTGATTATCTGCTGAG 60.221 44.000 0.00 0.00 0.00 3.35
3613 4053 3.430929 GCAAGACCAGGATAGTAGTGGTG 60.431 52.174 6.40 0.00 44.87 4.17
3615 4055 2.223829 CGCAAGACCAGGATAGTAGTGG 60.224 54.545 0.00 0.00 43.02 4.00
3650 4090 1.597461 CCGTCCTTCTCCTTGGGTC 59.403 63.158 0.00 0.00 0.00 4.46
3651 4091 2.593956 GCCGTCCTTCTCCTTGGGT 61.594 63.158 0.00 0.00 0.00 4.51
3762 4214 1.299014 CGAGGAGACGATGCAGCTC 60.299 63.158 0.00 0.18 35.09 4.09
3841 4299 2.113139 CAAGTTGACGCCCTGGGT 59.887 61.111 15.56 0.00 0.00 4.51
3861 4319 0.179089 CGCAGATGGACAAGGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
3868 4326 4.422073 AATAAGATCCGCAGATGGACAA 57.578 40.909 0.00 0.00 41.85 3.18
3885 4343 3.872511 TTTCGGCCAGTCGTCTAATAA 57.127 42.857 2.24 0.00 0.00 1.40
3886 4344 4.395959 AATTTCGGCCAGTCGTCTAATA 57.604 40.909 2.24 0.00 0.00 0.98
3887 4345 2.981859 ATTTCGGCCAGTCGTCTAAT 57.018 45.000 2.24 0.00 0.00 1.73
3888 4346 2.754946 AATTTCGGCCAGTCGTCTAA 57.245 45.000 2.24 0.00 0.00 2.10
3996 4458 4.389077 CACTCCTCTAAACGTCATTGAACC 59.611 45.833 0.00 0.00 0.00 3.62
4012 4474 2.565834 TGGTAACCTGCTAACACTCCTC 59.434 50.000 0.00 0.00 0.00 3.71
4013 4475 2.616524 TGGTAACCTGCTAACACTCCT 58.383 47.619 0.00 0.00 0.00 3.69
4014 4476 3.244457 ACTTGGTAACCTGCTAACACTCC 60.244 47.826 0.00 0.00 0.00 3.85
4015 4477 4.004196 ACTTGGTAACCTGCTAACACTC 57.996 45.455 0.00 0.00 0.00 3.51
4018 4480 2.882137 GCAACTTGGTAACCTGCTAACA 59.118 45.455 0.00 0.00 0.00 2.41
4051 4513 3.366396 CCCTCTCTTTGGTACTAGCTGA 58.634 50.000 0.00 0.00 0.00 4.26
4052 4514 2.432510 CCCCTCTCTTTGGTACTAGCTG 59.567 54.545 0.00 0.00 0.00 4.24
4053 4515 2.627217 CCCCCTCTCTTTGGTACTAGCT 60.627 54.545 0.00 0.00 0.00 3.32
4054 4516 1.763545 CCCCCTCTCTTTGGTACTAGC 59.236 57.143 0.00 0.00 0.00 3.42
4055 4517 3.399952 TCCCCCTCTCTTTGGTACTAG 57.600 52.381 0.00 0.00 0.00 2.57
4056 4518 3.858696 TTCCCCCTCTCTTTGGTACTA 57.141 47.619 0.00 0.00 0.00 1.82
4057 4519 2.735259 TTCCCCCTCTCTTTGGTACT 57.265 50.000 0.00 0.00 0.00 2.73
4058 4520 3.561528 CCTTTTCCCCCTCTCTTTGGTAC 60.562 52.174 0.00 0.00 0.00 3.34
4059 4521 2.647802 CCTTTTCCCCCTCTCTTTGGTA 59.352 50.000 0.00 0.00 0.00 3.25
4060 4522 1.429299 CCTTTTCCCCCTCTCTTTGGT 59.571 52.381 0.00 0.00 0.00 3.67
4064 4526 0.840722 TCGCCTTTTCCCCCTCTCTT 60.841 55.000 0.00 0.00 0.00 2.85
4065 4527 1.229529 TCGCCTTTTCCCCCTCTCT 60.230 57.895 0.00 0.00 0.00 3.10
4066 4528 1.222113 CTCGCCTTTTCCCCCTCTC 59.778 63.158 0.00 0.00 0.00 3.20
4133 4644 1.896345 ACATGTGACGAGATCGAACG 58.104 50.000 9.58 8.11 43.02 3.95
4216 4727 0.031178 CCAGCACACTTTTGACCTGC 59.969 55.000 0.00 0.00 0.00 4.85
4217 4728 1.066002 CACCAGCACACTTTTGACCTG 59.934 52.381 0.00 0.00 0.00 4.00
4218 4729 1.392589 CACCAGCACACTTTTGACCT 58.607 50.000 0.00 0.00 0.00 3.85
4234 7915 3.758554 AGTAGAAACAACATCATGGCACC 59.241 43.478 0.00 0.00 0.00 5.01
4260 7941 0.095935 CGTCACGGTCACTACGTAGG 59.904 60.000 25.63 14.76 43.58 3.18
4261 7942 0.095935 CCGTCACGGTCACTACGTAG 59.904 60.000 20.97 20.97 43.58 3.51
4262 7943 2.161831 CCGTCACGGTCACTACGTA 58.838 57.895 8.54 0.00 43.58 3.57
4322 8018 4.864806 GCGATTTTTGGGAAAAGAGAATCC 59.135 41.667 0.00 0.00 38.09 3.01
4374 8073 3.073062 ACCACCCACATATATTCTCTGGC 59.927 47.826 0.00 0.00 0.00 4.85
4390 8089 1.534729 CTCCTAAAAGCACACCACCC 58.465 55.000 0.00 0.00 0.00 4.61
4430 8129 2.844362 TATGGAGGAGGCGCCAGG 60.844 66.667 31.54 0.00 40.02 4.45
4522 8283 3.492309 GGCAGTAGGAGTGATCATGACAG 60.492 52.174 0.00 0.00 0.00 3.51
4539 8300 2.097036 TGCACTAGTGTATACGGCAGT 58.903 47.619 23.44 0.00 0.00 4.40
4552 8313 2.584791 GCCATGTTCGTTTTGCACTAG 58.415 47.619 0.00 0.00 0.00 2.57
4554 8315 0.317770 CGCCATGTTCGTTTTGCACT 60.318 50.000 0.00 0.00 0.00 4.40
4555 8316 0.317436 TCGCCATGTTCGTTTTGCAC 60.317 50.000 0.00 0.00 0.00 4.57
4557 8318 1.052287 CTTCGCCATGTTCGTTTTGC 58.948 50.000 4.83 0.00 0.00 3.68
4558 8319 1.665735 CCCTTCGCCATGTTCGTTTTG 60.666 52.381 4.83 0.00 0.00 2.44
4562 8327 2.046314 CCCCTTCGCCATGTTCGT 60.046 61.111 4.83 0.00 0.00 3.85
4584 8349 0.107643 TGTTCGTCATTCCTGCACCA 59.892 50.000 0.00 0.00 0.00 4.17
4627 8398 2.605580 GCAAGCAAGCAGGTGTTAAGTC 60.606 50.000 0.00 0.00 0.00 3.01
4628 8399 1.338020 GCAAGCAAGCAGGTGTTAAGT 59.662 47.619 0.00 0.00 0.00 2.24
4629 8400 1.336240 GGCAAGCAAGCAGGTGTTAAG 60.336 52.381 2.78 0.00 35.83 1.85
4630 8401 0.673437 GGCAAGCAAGCAGGTGTTAA 59.327 50.000 2.78 0.00 35.83 2.01
4631 8402 1.178534 GGGCAAGCAAGCAGGTGTTA 61.179 55.000 2.78 0.00 35.83 2.41
4632 8403 2.501602 GGGCAAGCAAGCAGGTGTT 61.502 57.895 2.78 0.00 35.83 3.32
4633 8404 2.914097 GGGCAAGCAAGCAGGTGT 60.914 61.111 2.78 0.00 35.83 4.16
4642 8413 0.827507 GAGGGTTTTCAGGGCAAGCA 60.828 55.000 0.00 0.00 0.00 3.91
4643 8414 0.827507 TGAGGGTTTTCAGGGCAAGC 60.828 55.000 0.00 0.00 0.00 4.01
4657 8428 1.126488 TGGCTCTGCTCTAATGAGGG 58.874 55.000 0.00 0.00 40.53 4.30
4727 10130 2.304180 GGCCAGTAGCACTCATCCATAT 59.696 50.000 0.00 0.00 46.50 1.78
4742 10145 0.833834 AGTACTGCTGACTGGCCAGT 60.834 55.000 38.42 38.42 45.84 4.00
4752 10155 5.050634 GTCGACTAGTCTGATAGTACTGCTG 60.051 48.000 20.34 2.08 36.13 4.41
4763 10166 2.174363 TTCCACGTCGACTAGTCTGA 57.826 50.000 20.34 15.55 0.00 3.27
4793 10196 6.035975 CCATTTTTCACCAAATATCGCTTTCC 59.964 38.462 0.00 0.00 0.00 3.13
4796 10199 5.186797 TCCCATTTTTCACCAAATATCGCTT 59.813 36.000 0.00 0.00 0.00 4.68
4816 10219 2.247358 GGAAAGTTGAAATGGCTCCCA 58.753 47.619 0.00 0.00 38.19 4.37
4818 10221 2.247358 TGGGAAAGTTGAAATGGCTCC 58.753 47.619 0.00 0.00 0.00 4.70
4832 10235 5.083122 TGCCAGTTTCATAATCTTGGGAAA 58.917 37.500 0.00 0.00 0.00 3.13
4856 10259 0.237498 GTTTGTACTGGGCTGAACGC 59.763 55.000 0.00 0.00 38.13 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.