Multiple sequence alignment - TraesCS2D01G399700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G399700 chr2D 100.000 3642 0 0 1 3642 512922053 512925694 0.000000e+00 6726.0
1 TraesCS2D01G399700 chr2D 95.492 244 11 0 123 366 541547531 541547288 1.230000e-104 390.0
2 TraesCS2D01G399700 chr2D 95.473 243 11 0 124 366 6521170 6521412 4.410000e-104 388.0
3 TraesCS2D01G399700 chr2B 96.289 2964 88 9 691 3642 603425889 603428842 0.000000e+00 4844.0
4 TraesCS2D01G399700 chr2B 95.833 240 10 0 123 362 135101418 135101657 4.410000e-104 388.0
5 TraesCS2D01G399700 chr2B 80.236 339 34 12 372 678 212179844 212179507 1.320000e-54 224.0
6 TraesCS2D01G399700 chr2B 89.000 100 9 2 700 797 712958220 712958319 4.940000e-24 122.0
7 TraesCS2D01G399700 chr2B 86.957 92 12 0 697 788 91605806 91605897 1.790000e-18 104.0
8 TraesCS2D01G399700 chr2B 84.466 103 15 1 686 787 798537945 798537843 2.310000e-17 100.0
9 TraesCS2D01G399700 chr2B 97.143 35 1 0 1 35 171023189 171023155 3.930000e-05 60.2
10 TraesCS2D01G399700 chr2A 95.478 2344 80 12 767 3092 656702152 656704487 0.000000e+00 3718.0
11 TraesCS2D01G399700 chr2A 94.294 333 16 2 3312 3642 656705162 656705493 1.170000e-139 507.0
12 TraesCS2D01G399700 chr2A 92.473 186 10 4 3133 3315 656704495 656704679 2.790000e-66 263.0
13 TraesCS2D01G399700 chr6D 78.283 1561 273 53 1041 2574 333349273 333347752 0.000000e+00 944.0
14 TraesCS2D01G399700 chr6D 81.040 327 30 14 383 678 472262098 472261773 7.860000e-57 231.0
15 TraesCS2D01G399700 chr6B 77.885 1551 292 39 1045 2574 487133235 487134755 0.000000e+00 917.0
16 TraesCS2D01G399700 chr6B 97.083 240 7 0 123 362 347227153 347227392 4.380000e-109 405.0
17 TraesCS2D01G399700 chr6A 82.413 887 130 18 1695 2574 472949303 472948436 0.000000e+00 750.0
18 TraesCS2D01G399700 chr6A 77.425 598 116 16 1041 1627 472949972 472949383 4.500000e-89 339.0
19 TraesCS2D01G399700 chr3A 94.821 251 13 0 116 366 309063553 309063803 3.410000e-105 392.0
20 TraesCS2D01G399700 chr3A 100.000 32 0 0 4 35 16626168 16626137 3.930000e-05 60.2
21 TraesCS2D01G399700 chr3A 91.111 45 2 2 6 48 741614158 741614202 3.930000e-05 60.2
22 TraesCS2D01G399700 chr5A 94.800 250 13 0 118 367 707705430 707705181 1.230000e-104 390.0
23 TraesCS2D01G399700 chr5A 90.286 175 16 1 389 563 36362314 36362141 1.020000e-55 228.0
24 TraesCS2D01G399700 chr5B 94.444 252 12 2 119 368 198381790 198382041 1.590000e-103 387.0
25 TraesCS2D01G399700 chr1D 95.102 245 12 0 123 367 448103379 448103135 1.590000e-103 387.0
26 TraesCS2D01G399700 chr1D 80.473 338 34 15 372 678 79802934 79802598 2.830000e-56 230.0
27 TraesCS2D01G399700 chr4D 93.077 260 15 2 109 367 477414326 477414583 9.550000e-101 377.0
28 TraesCS2D01G399700 chr5D 82.445 319 24 16 391 678 541527963 541527646 2.170000e-62 250.0
29 TraesCS2D01G399700 chr5D 95.455 44 0 2 6 49 381406947 381406906 6.530000e-08 69.4
30 TraesCS2D01G399700 chrUn 80.781 333 39 18 369 678 82540137 82540467 1.690000e-58 237.0
31 TraesCS2D01G399700 chrUn 89.011 91 10 0 697 787 100286887 100286797 2.970000e-21 113.0
32 TraesCS2D01G399700 chr3D 81.646 316 31 11 391 679 359522258 359521943 1.690000e-58 237.0
33 TraesCS2D01G399700 chr3D 97.143 35 1 0 1 35 414762670 414762704 3.930000e-05 60.2
34 TraesCS2D01G399700 chr7B 90.751 173 16 0 391 563 44764286 44764114 7.860000e-57 231.0
35 TraesCS2D01G399700 chr7B 89.216 102 9 2 697 796 723732273 723732172 3.820000e-25 126.0
36 TraesCS2D01G399700 chr3B 90.751 173 16 0 391 563 75973476 75973648 7.860000e-57 231.0
37 TraesCS2D01G399700 chr3B 100.000 32 0 0 4 35 427162305 427162274 3.930000e-05 60.2
38 TraesCS2D01G399700 chr3B 97.143 35 1 0 1 35 503981667 503981701 3.930000e-05 60.2
39 TraesCS2D01G399700 chr4A 80.531 113 20 2 687 797 697973595 697973483 6.480000e-13 86.1
40 TraesCS2D01G399700 chr7A 95.000 40 2 0 6 45 646083663 646083624 3.040000e-06 63.9
41 TraesCS2D01G399700 chr7A 97.143 35 1 0 1 35 20442049 20442015 3.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G399700 chr2D 512922053 512925694 3641 False 6726.0 6726 100.000000 1 3642 1 chr2D.!!$F2 3641
1 TraesCS2D01G399700 chr2B 603425889 603428842 2953 False 4844.0 4844 96.289000 691 3642 1 chr2B.!!$F3 2951
2 TraesCS2D01G399700 chr2A 656702152 656705493 3341 False 1496.0 3718 94.081667 767 3642 3 chr2A.!!$F1 2875
3 TraesCS2D01G399700 chr6D 333347752 333349273 1521 True 944.0 944 78.283000 1041 2574 1 chr6D.!!$R1 1533
4 TraesCS2D01G399700 chr6B 487133235 487134755 1520 False 917.0 917 77.885000 1045 2574 1 chr6B.!!$F2 1529
5 TraesCS2D01G399700 chr6A 472948436 472949972 1536 True 544.5 750 79.919000 1041 2574 2 chr6A.!!$R1 1533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 682 0.036010 CACCAAATCTGCGTCCCTCT 60.036 55.0 0.0 0.0 0.0 3.69 F
682 683 0.036010 ACCAAATCTGCGTCCCTCTG 60.036 55.0 0.0 0.0 0.0 3.35 F
686 687 0.036952 AATCTGCGTCCCTCTGTGTG 60.037 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1642 0.452987 TACAGACACGCGTGGATACC 59.547 55.000 39.21 22.75 34.19 2.73 R
2371 2408 1.739929 CTGCACGGCGGTGTTCATA 60.740 57.895 23.39 6.74 46.13 2.15 R
2647 2687 2.549992 CCTGCATCCGGATCCGATTAAA 60.550 50.000 35.42 16.05 42.83 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.915629 ATGACTCAACTTTGTACTAACTTAGAG 57.084 33.333 2.65 0.00 0.00 2.43
39 40 8.358148 TGACTCAACTTTGTACTAACTTAGAGG 58.642 37.037 2.65 0.00 0.00 3.69
40 41 7.668492 ACTCAACTTTGTACTAACTTAGAGGG 58.332 38.462 2.65 0.00 0.00 4.30
41 42 7.508296 ACTCAACTTTGTACTAACTTAGAGGGA 59.492 37.037 2.65 0.00 0.00 4.20
42 43 7.893658 TCAACTTTGTACTAACTTAGAGGGAG 58.106 38.462 2.65 0.00 0.00 4.30
43 44 7.508296 TCAACTTTGTACTAACTTAGAGGGAGT 59.492 37.037 2.65 0.00 0.00 3.85
44 45 8.800332 CAACTTTGTACTAACTTAGAGGGAGTA 58.200 37.037 2.65 0.00 0.00 2.59
45 46 9.544579 AACTTTGTACTAACTTAGAGGGAGTAT 57.455 33.333 2.65 0.00 0.00 2.12
85 86 8.788325 AACTTTTATATAGAACTTTGCCTCGT 57.212 30.769 0.00 0.00 0.00 4.18
86 87 8.421673 ACTTTTATATAGAACTTTGCCTCGTC 57.578 34.615 0.00 0.00 0.00 4.20
87 88 8.258708 ACTTTTATATAGAACTTTGCCTCGTCT 58.741 33.333 0.00 0.00 0.00 4.18
88 89 9.099454 CTTTTATATAGAACTTTGCCTCGTCTT 57.901 33.333 0.00 0.00 0.00 3.01
89 90 8.644318 TTTATATAGAACTTTGCCTCGTCTTC 57.356 34.615 0.00 0.00 0.00 2.87
90 91 4.810191 ATAGAACTTTGCCTCGTCTTCT 57.190 40.909 0.00 0.00 0.00 2.85
91 92 5.916661 ATAGAACTTTGCCTCGTCTTCTA 57.083 39.130 0.00 0.00 0.00 2.10
92 93 4.810191 AGAACTTTGCCTCGTCTTCTAT 57.190 40.909 0.00 0.00 0.00 1.98
93 94 5.153950 AGAACTTTGCCTCGTCTTCTATT 57.846 39.130 0.00 0.00 0.00 1.73
94 95 6.282199 AGAACTTTGCCTCGTCTTCTATTA 57.718 37.500 0.00 0.00 0.00 0.98
95 96 6.698380 AGAACTTTGCCTCGTCTTCTATTAA 58.302 36.000 0.00 0.00 0.00 1.40
96 97 7.331791 AGAACTTTGCCTCGTCTTCTATTAAT 58.668 34.615 0.00 0.00 0.00 1.40
97 98 7.824779 AGAACTTTGCCTCGTCTTCTATTAATT 59.175 33.333 0.00 0.00 0.00 1.40
98 99 7.923414 ACTTTGCCTCGTCTTCTATTAATTT 57.077 32.000 0.00 0.00 0.00 1.82
99 100 7.752695 ACTTTGCCTCGTCTTCTATTAATTTG 58.247 34.615 0.00 0.00 0.00 2.32
100 101 7.390718 ACTTTGCCTCGTCTTCTATTAATTTGT 59.609 33.333 0.00 0.00 0.00 2.83
101 102 6.662414 TGCCTCGTCTTCTATTAATTTGTG 57.338 37.500 0.00 0.00 0.00 3.33
102 103 5.064707 TGCCTCGTCTTCTATTAATTTGTGC 59.935 40.000 0.00 0.00 0.00 4.57
103 104 5.064707 GCCTCGTCTTCTATTAATTTGTGCA 59.935 40.000 0.00 0.00 0.00 4.57
104 105 6.478588 CCTCGTCTTCTATTAATTTGTGCAC 58.521 40.000 10.75 10.75 0.00 4.57
105 106 6.313905 CCTCGTCTTCTATTAATTTGTGCACT 59.686 38.462 19.41 0.00 0.00 4.40
106 107 7.290857 TCGTCTTCTATTAATTTGTGCACTC 57.709 36.000 19.41 0.00 0.00 3.51
107 108 6.312918 TCGTCTTCTATTAATTTGTGCACTCC 59.687 38.462 19.41 0.00 0.00 3.85
108 109 6.092122 CGTCTTCTATTAATTTGTGCACTCCA 59.908 38.462 19.41 1.73 0.00 3.86
109 110 7.360861 CGTCTTCTATTAATTTGTGCACTCCAA 60.361 37.037 19.41 8.70 0.00 3.53
110 111 7.965107 GTCTTCTATTAATTTGTGCACTCCAAG 59.035 37.037 19.41 5.03 0.00 3.61
111 112 7.882791 TCTTCTATTAATTTGTGCACTCCAAGA 59.117 33.333 19.41 7.22 0.00 3.02
112 113 7.994425 TCTATTAATTTGTGCACTCCAAGAA 57.006 32.000 19.41 5.81 0.00 2.52
113 114 8.402798 TCTATTAATTTGTGCACTCCAAGAAA 57.597 30.769 19.41 9.27 0.00 2.52
114 115 8.296713 TCTATTAATTTGTGCACTCCAAGAAAC 58.703 33.333 19.41 0.00 0.00 2.78
115 116 6.463995 TTAATTTGTGCACTCCAAGAAACT 57.536 33.333 19.41 1.29 0.00 2.66
116 117 5.343307 AATTTGTGCACTCCAAGAAACTT 57.657 34.783 19.41 0.00 0.00 2.66
117 118 4.799564 TTTGTGCACTCCAAGAAACTTT 57.200 36.364 19.41 0.00 0.00 2.66
118 119 4.799564 TTGTGCACTCCAAGAAACTTTT 57.200 36.364 19.41 0.00 0.00 2.27
119 120 5.906113 TTGTGCACTCCAAGAAACTTTTA 57.094 34.783 19.41 0.00 0.00 1.52
120 121 6.463995 TTGTGCACTCCAAGAAACTTTTAT 57.536 33.333 19.41 0.00 0.00 1.40
121 122 6.072112 TGTGCACTCCAAGAAACTTTTATC 57.928 37.500 19.41 0.00 0.00 1.75
122 123 5.827797 TGTGCACTCCAAGAAACTTTTATCT 59.172 36.000 19.41 0.00 0.00 1.98
123 124 6.995686 TGTGCACTCCAAGAAACTTTTATCTA 59.004 34.615 19.41 0.00 0.00 1.98
124 125 7.665559 TGTGCACTCCAAGAAACTTTTATCTAT 59.334 33.333 19.41 0.00 0.00 1.98
125 126 8.178313 GTGCACTCCAAGAAACTTTTATCTATC 58.822 37.037 10.32 0.00 0.00 2.08
126 127 8.103305 TGCACTCCAAGAAACTTTTATCTATCT 58.897 33.333 0.00 0.00 0.00 1.98
127 128 9.601217 GCACTCCAAGAAACTTTTATCTATCTA 57.399 33.333 0.00 0.00 0.00 1.98
154 155 7.360113 TCAATATAAAAAGATCCAAAGGGGC 57.640 36.000 0.00 0.00 36.21 5.80
155 156 6.900186 TCAATATAAAAAGATCCAAAGGGGCA 59.100 34.615 0.00 0.00 36.21 5.36
156 157 6.983906 ATATAAAAAGATCCAAAGGGGCAG 57.016 37.500 0.00 0.00 36.21 4.85
157 158 2.999185 AAAAGATCCAAAGGGGCAGA 57.001 45.000 0.00 0.00 36.21 4.26
158 159 3.479866 AAAAGATCCAAAGGGGCAGAT 57.520 42.857 0.00 0.00 36.21 2.90
159 160 2.744352 AAGATCCAAAGGGGCAGATC 57.256 50.000 0.00 0.00 36.25 2.75
160 161 0.849417 AGATCCAAAGGGGCAGATCC 59.151 55.000 0.00 0.00 36.59 3.36
161 162 0.552848 GATCCAAAGGGGCAGATCCA 59.447 55.000 0.00 0.00 36.21 3.41
162 163 1.009997 ATCCAAAGGGGCAGATCCAA 58.990 50.000 0.00 0.00 36.21 3.53
163 164 0.039618 TCCAAAGGGGCAGATCCAAC 59.960 55.000 0.00 0.00 36.21 3.77
164 165 0.040204 CCAAAGGGGCAGATCCAACT 59.960 55.000 0.00 0.00 36.21 3.16
165 166 1.284785 CCAAAGGGGCAGATCCAACTA 59.715 52.381 0.00 0.00 36.21 2.24
166 167 2.291540 CCAAAGGGGCAGATCCAACTAA 60.292 50.000 0.00 0.00 36.21 2.24
167 168 3.628257 CCAAAGGGGCAGATCCAACTAAT 60.628 47.826 0.00 0.00 36.21 1.73
168 169 3.584733 AAGGGGCAGATCCAACTAATC 57.415 47.619 0.00 0.00 36.21 1.75
169 170 2.781667 AGGGGCAGATCCAACTAATCT 58.218 47.619 0.00 0.00 36.21 2.40
170 171 2.708325 AGGGGCAGATCCAACTAATCTC 59.292 50.000 0.00 0.00 36.21 2.75
171 172 2.548920 GGGGCAGATCCAACTAATCTCG 60.549 54.545 0.00 0.00 36.21 4.04
172 173 2.548920 GGGCAGATCCAACTAATCTCGG 60.549 54.545 0.00 0.00 36.21 4.63
173 174 2.139118 GCAGATCCAACTAATCTCGGC 58.861 52.381 0.00 0.00 31.05 5.54
174 175 2.760374 CAGATCCAACTAATCTCGGCC 58.240 52.381 0.00 0.00 31.05 6.13
175 176 2.103094 CAGATCCAACTAATCTCGGCCA 59.897 50.000 2.24 0.00 31.05 5.36
176 177 2.975489 AGATCCAACTAATCTCGGCCAT 59.025 45.455 2.24 0.00 0.00 4.40
177 178 2.910688 TCCAACTAATCTCGGCCATC 57.089 50.000 2.24 0.00 0.00 3.51
178 179 2.115427 TCCAACTAATCTCGGCCATCA 58.885 47.619 2.24 0.00 0.00 3.07
179 180 2.503765 TCCAACTAATCTCGGCCATCAA 59.496 45.455 2.24 0.00 0.00 2.57
180 181 3.054728 TCCAACTAATCTCGGCCATCAAA 60.055 43.478 2.24 0.00 0.00 2.69
181 182 3.885297 CCAACTAATCTCGGCCATCAAAT 59.115 43.478 2.24 0.00 0.00 2.32
182 183 4.023707 CCAACTAATCTCGGCCATCAAATC 60.024 45.833 2.24 0.00 0.00 2.17
183 184 4.422073 ACTAATCTCGGCCATCAAATCA 57.578 40.909 2.24 0.00 0.00 2.57
184 185 4.978099 ACTAATCTCGGCCATCAAATCAT 58.022 39.130 2.24 0.00 0.00 2.45
185 186 4.758674 ACTAATCTCGGCCATCAAATCATG 59.241 41.667 2.24 0.00 0.00 3.07
186 187 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
187 188 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
188 189 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
189 190 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
190 191 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
191 192 3.316029 TCGGCCATCAAATCATGTCAATC 59.684 43.478 2.24 0.00 0.00 2.67
192 193 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
193 194 3.385433 GGCCATCAAATCATGTCAATCCA 59.615 43.478 0.00 0.00 0.00 3.41
194 195 4.141892 GGCCATCAAATCATGTCAATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
195 196 4.807304 GCCATCAAATCATGTCAATCCAAC 59.193 41.667 0.00 0.00 0.00 3.77
196 197 5.038683 CCATCAAATCATGTCAATCCAACG 58.961 41.667 0.00 0.00 0.00 4.10
197 198 5.163632 CCATCAAATCATGTCAATCCAACGA 60.164 40.000 0.00 0.00 0.00 3.85
198 199 5.295431 TCAAATCATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 0.00 4.34
199 200 4.155826 TCAAATCATGTCAATCCAACGACC 59.844 41.667 0.00 0.00 0.00 4.79
200 201 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
201 202 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
202 203 4.123497 TCATGTCAATCCAACGACCTAG 57.877 45.455 0.00 0.00 0.00 3.02
203 204 3.767131 TCATGTCAATCCAACGACCTAGA 59.233 43.478 0.00 0.00 0.00 2.43
204 205 3.587797 TGTCAATCCAACGACCTAGAC 57.412 47.619 0.00 0.00 0.00 2.59
205 206 3.162666 TGTCAATCCAACGACCTAGACT 58.837 45.455 0.00 0.00 0.00 3.24
206 207 3.056821 TGTCAATCCAACGACCTAGACTG 60.057 47.826 0.00 0.00 0.00 3.51
207 208 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
208 209 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
209 210 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
210 211 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
211 212 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
212 213 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
213 214 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
214 215 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
215 216 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
216 217 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
217 218 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
218 219 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
219 220 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
220 221 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
221 222 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
222 223 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
223 224 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
224 225 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
225 226 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
226 227 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
227 228 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
228 229 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
229 230 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
230 231 1.617755 AATGTCGAGCGCTCAACACG 61.618 55.000 31.93 20.44 0.00 4.49
231 232 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
232 233 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
233 234 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
234 235 0.318022 TCGAGCGCTCAACACGTTTA 60.318 50.000 34.69 4.78 0.00 2.01
235 236 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85
236 237 0.179248 GAGCGCTCAACACGTTTAGC 60.179 55.000 31.91 6.11 36.68 3.09
251 252 5.272167 CGTTTAGCGTGGAGTTAATTTCA 57.728 39.130 0.00 0.00 35.54 2.69
252 253 5.864986 CGTTTAGCGTGGAGTTAATTTCAT 58.135 37.500 0.00 0.00 35.54 2.57
253 254 5.732647 CGTTTAGCGTGGAGTTAATTTCATG 59.267 40.000 0.00 0.00 35.54 3.07
254 255 3.764885 AGCGTGGAGTTAATTTCATGC 57.235 42.857 14.11 14.11 41.06 4.06
255 256 2.423538 AGCGTGGAGTTAATTTCATGCC 59.576 45.455 17.38 3.17 41.51 4.40
256 257 2.163412 GCGTGGAGTTAATTTCATGCCA 59.837 45.455 11.49 0.00 36.47 4.92
257 258 3.366883 GCGTGGAGTTAATTTCATGCCAA 60.367 43.478 11.49 0.00 36.47 4.52
258 259 4.804108 CGTGGAGTTAATTTCATGCCAAA 58.196 39.130 0.00 0.00 0.00 3.28
259 260 5.410067 CGTGGAGTTAATTTCATGCCAAAT 58.590 37.500 0.00 0.00 0.00 2.32
260 261 6.559810 CGTGGAGTTAATTTCATGCCAAATA 58.440 36.000 0.00 0.00 0.00 1.40
261 262 7.202526 CGTGGAGTTAATTTCATGCCAAATAT 58.797 34.615 0.00 0.00 0.00 1.28
262 263 8.349245 CGTGGAGTTAATTTCATGCCAAATATA 58.651 33.333 0.00 0.00 0.00 0.86
273 274 9.695526 TTTCATGCCAAATATAATGCTAATCAC 57.304 29.630 0.00 0.00 0.00 3.06
274 275 8.406730 TCATGCCAAATATAATGCTAATCACA 57.593 30.769 0.00 0.00 0.00 3.58
275 276 9.027202 TCATGCCAAATATAATGCTAATCACAT 57.973 29.630 0.00 0.00 0.00 3.21
286 287 6.859420 ATGCTAATCACATAATAACACGCA 57.141 33.333 0.00 0.00 0.00 5.24
287 288 6.670077 TGCTAATCACATAATAACACGCAA 57.330 33.333 0.00 0.00 0.00 4.85
288 289 7.078011 TGCTAATCACATAATAACACGCAAA 57.922 32.000 0.00 0.00 0.00 3.68
289 290 7.702386 TGCTAATCACATAATAACACGCAAAT 58.298 30.769 0.00 0.00 0.00 2.32
290 291 8.831550 TGCTAATCACATAATAACACGCAAATA 58.168 29.630 0.00 0.00 0.00 1.40
291 292 9.658475 GCTAATCACATAATAACACGCAAATAA 57.342 29.630 0.00 0.00 0.00 1.40
309 310 9.849607 CGCAAATAATATCCTACTTAATATGCG 57.150 33.333 0.00 0.00 0.00 4.73
310 311 9.651718 GCAAATAATATCCTACTTAATATGCGC 57.348 33.333 0.00 0.00 0.00 6.09
314 315 6.851222 ATATCCTACTTAATATGCGCATGC 57.149 37.500 32.48 7.91 43.20 4.06
329 330 4.712763 GCGCATGCACTTAATATACTTCC 58.287 43.478 19.57 0.00 42.15 3.46
330 331 4.213270 GCGCATGCACTTAATATACTTCCA 59.787 41.667 19.57 0.00 42.15 3.53
331 332 5.277779 GCGCATGCACTTAATATACTTCCAA 60.278 40.000 19.57 0.00 42.15 3.53
332 333 6.724263 CGCATGCACTTAATATACTTCCAAA 58.276 36.000 19.57 0.00 0.00 3.28
333 334 7.362662 CGCATGCACTTAATATACTTCCAAAT 58.637 34.615 19.57 0.00 0.00 2.32
334 335 7.862372 CGCATGCACTTAATATACTTCCAAATT 59.138 33.333 19.57 0.00 0.00 1.82
345 346 9.515020 AATATACTTCCAAATTAACGTGCATTG 57.485 29.630 0.00 0.00 0.00 2.82
346 347 3.987220 ACTTCCAAATTAACGTGCATTGC 59.013 39.130 0.46 0.46 0.00 3.56
347 348 3.650070 TCCAAATTAACGTGCATTGCA 57.350 38.095 7.38 7.38 35.60 4.08
362 363 5.805229 TGCATTGCACGTATACATTAACTG 58.195 37.500 7.38 0.00 31.71 3.16
363 364 5.204833 GCATTGCACGTATACATTAACTGG 58.795 41.667 3.15 0.00 0.00 4.00
364 365 5.220777 GCATTGCACGTATACATTAACTGGT 60.221 40.000 3.15 0.00 0.00 4.00
365 366 6.018588 GCATTGCACGTATACATTAACTGGTA 60.019 38.462 3.15 0.00 0.00 3.25
366 367 7.307751 GCATTGCACGTATACATTAACTGGTAT 60.308 37.037 3.15 0.00 34.72 2.73
367 368 7.471657 TTGCACGTATACATTAACTGGTATG 57.528 36.000 3.32 0.00 32.72 2.39
368 369 6.575267 TGCACGTATACATTAACTGGTATGT 58.425 36.000 3.32 0.00 38.46 2.29
369 370 7.042950 TGCACGTATACATTAACTGGTATGTT 58.957 34.615 3.32 0.00 36.46 2.71
370 371 7.223193 TGCACGTATACATTAACTGGTATGTTC 59.777 37.037 3.32 0.00 36.46 3.18
371 372 7.223193 GCACGTATACATTAACTGGTATGTTCA 59.777 37.037 3.32 0.00 36.46 3.18
372 373 9.089601 CACGTATACATTAACTGGTATGTTCAA 57.910 33.333 3.32 0.00 36.46 2.69
373 374 9.656040 ACGTATACATTAACTGGTATGTTCAAA 57.344 29.630 3.32 0.00 36.46 2.69
392 393 9.250624 TGTTCAAATTTTCTAAAAATACCACGG 57.749 29.630 0.00 0.00 0.00 4.94
393 394 9.251792 GTTCAAATTTTCTAAAAATACCACGGT 57.748 29.630 0.00 0.00 0.00 4.83
400 401 7.614124 TTCTAAAAATACCACGGTATGAACC 57.386 36.000 9.49 0.00 40.73 3.62
401 402 6.949715 TCTAAAAATACCACGGTATGAACCT 58.050 36.000 9.49 0.00 44.35 3.50
402 403 7.043565 TCTAAAAATACCACGGTATGAACCTC 58.956 38.462 9.49 0.00 44.35 3.85
403 404 4.829872 AAATACCACGGTATGAACCTCA 57.170 40.909 9.49 0.00 44.35 3.86
404 405 4.402056 AATACCACGGTATGAACCTCAG 57.598 45.455 9.49 0.00 44.35 3.35
405 406 1.640917 ACCACGGTATGAACCTCAGT 58.359 50.000 0.00 0.00 44.35 3.41
406 407 1.975680 ACCACGGTATGAACCTCAGTT 59.024 47.619 0.00 0.00 44.35 3.16
407 408 2.289444 ACCACGGTATGAACCTCAGTTG 60.289 50.000 0.00 0.00 44.35 3.16
408 409 2.028476 CCACGGTATGAACCTCAGTTGA 60.028 50.000 0.00 0.00 44.35 3.18
409 410 3.369471 CCACGGTATGAACCTCAGTTGAT 60.369 47.826 0.00 0.00 44.35 2.57
410 411 3.865745 CACGGTATGAACCTCAGTTGATC 59.134 47.826 0.00 0.00 44.35 2.92
411 412 3.513912 ACGGTATGAACCTCAGTTGATCA 59.486 43.478 0.00 0.00 44.35 2.92
412 413 4.162320 ACGGTATGAACCTCAGTTGATCAT 59.838 41.667 0.00 3.15 44.35 2.45
413 414 5.118990 CGGTATGAACCTCAGTTGATCATT 58.881 41.667 0.00 0.00 44.35 2.57
414 415 5.235186 CGGTATGAACCTCAGTTGATCATTC 59.765 44.000 0.00 0.00 44.35 2.67
415 416 6.352516 GGTATGAACCTCAGTTGATCATTCT 58.647 40.000 0.00 0.00 43.08 2.40
416 417 7.500992 GGTATGAACCTCAGTTGATCATTCTA 58.499 38.462 0.00 0.00 43.08 2.10
417 418 7.439655 GGTATGAACCTCAGTTGATCATTCTAC 59.560 40.741 0.00 0.00 43.08 2.59
418 419 6.611613 TGAACCTCAGTTGATCATTCTACT 57.388 37.500 0.00 0.00 38.28 2.57
419 420 6.634805 TGAACCTCAGTTGATCATTCTACTC 58.365 40.000 0.00 0.00 36.05 2.59
420 421 6.211384 TGAACCTCAGTTGATCATTCTACTCA 59.789 38.462 0.00 0.00 36.05 3.41
421 422 5.971763 ACCTCAGTTGATCATTCTACTCAC 58.028 41.667 0.00 0.00 36.05 3.51
422 423 5.481824 ACCTCAGTTGATCATTCTACTCACA 59.518 40.000 0.00 0.00 36.05 3.58
423 424 6.155910 ACCTCAGTTGATCATTCTACTCACAT 59.844 38.462 0.00 0.00 36.05 3.21
424 425 6.479331 CCTCAGTTGATCATTCTACTCACATG 59.521 42.308 0.00 0.00 36.05 3.21
425 426 6.939622 TCAGTTGATCATTCTACTCACATGT 58.060 36.000 0.00 0.00 36.05 3.21
426 427 6.815142 TCAGTTGATCATTCTACTCACATGTG 59.185 38.462 20.18 20.18 36.05 3.21
427 428 6.815142 CAGTTGATCATTCTACTCACATGTGA 59.185 38.462 26.33 26.33 36.05 3.58
428 429 7.332678 CAGTTGATCATTCTACTCACATGTGAA 59.667 37.037 27.63 14.24 39.39 3.18
429 430 7.548427 AGTTGATCATTCTACTCACATGTGAAG 59.452 37.037 27.63 22.38 39.39 3.02
430 431 6.939622 TGATCATTCTACTCACATGTGAAGT 58.060 36.000 27.63 25.77 39.39 3.01
431 432 7.389232 TGATCATTCTACTCACATGTGAAGTT 58.611 34.615 27.63 17.36 39.39 2.66
432 433 7.879677 TGATCATTCTACTCACATGTGAAGTTT 59.120 33.333 27.63 15.11 39.39 2.66
433 434 7.658179 TCATTCTACTCACATGTGAAGTTTC 57.342 36.000 27.63 0.00 39.39 2.78
434 435 7.216494 TCATTCTACTCACATGTGAAGTTTCA 58.784 34.615 27.63 11.90 39.39 2.69
435 436 7.879677 TCATTCTACTCACATGTGAAGTTTCAT 59.120 33.333 27.63 13.48 39.73 2.57
436 437 7.425577 TTCTACTCACATGTGAAGTTTCATG 57.574 36.000 27.63 16.21 44.56 3.07
437 438 6.758254 TCTACTCACATGTGAAGTTTCATGA 58.242 36.000 27.63 14.36 42.52 3.07
438 439 7.389232 TCTACTCACATGTGAAGTTTCATGAT 58.611 34.615 27.63 8.34 42.52 2.45
439 440 6.250344 ACTCACATGTGAAGTTTCATGATG 57.750 37.500 27.63 14.41 42.52 3.07
440 441 5.766670 ACTCACATGTGAAGTTTCATGATGT 59.233 36.000 27.63 15.01 42.52 3.06
441 442 6.936335 ACTCACATGTGAAGTTTCATGATGTA 59.064 34.615 27.63 1.53 42.52 2.29
442 443 7.609146 ACTCACATGTGAAGTTTCATGATGTAT 59.391 33.333 27.63 1.41 42.52 2.29
443 444 9.101655 CTCACATGTGAAGTTTCATGATGTATA 57.898 33.333 27.63 0.81 42.52 1.47
444 445 9.101655 TCACATGTGAAGTTTCATGATGTATAG 57.898 33.333 26.02 9.04 42.52 1.31
445 446 9.101655 CACATGTGAAGTTTCATGATGTATAGA 57.898 33.333 21.64 0.00 42.52 1.98
446 447 9.102757 ACATGTGAAGTTTCATGATGTATAGAC 57.897 33.333 20.86 0.00 42.52 2.59
447 448 9.101655 CATGTGAAGTTTCATGATGTATAGACA 57.898 33.333 13.30 0.00 42.52 3.41
448 449 8.479313 TGTGAAGTTTCATGATGTATAGACAC 57.521 34.615 0.00 1.63 37.74 3.67
449 450 8.314021 TGTGAAGTTTCATGATGTATAGACACT 58.686 33.333 0.00 0.00 37.74 3.55
450 451 8.812329 GTGAAGTTTCATGATGTATAGACACTC 58.188 37.037 0.00 0.00 37.74 3.51
451 452 8.531146 TGAAGTTTCATGATGTATAGACACTCA 58.469 33.333 0.00 0.00 33.08 3.41
452 453 9.539825 GAAGTTTCATGATGTATAGACACTCAT 57.460 33.333 0.00 1.33 38.76 2.90
453 454 8.883954 AGTTTCATGATGTATAGACACTCATG 57.116 34.615 22.97 22.97 43.68 3.07
454 455 7.930325 AGTTTCATGATGTATAGACACTCATGG 59.070 37.037 25.54 15.88 43.22 3.66
455 456 6.983906 TCATGATGTATAGACACTCATGGT 57.016 37.500 25.54 1.54 43.22 3.55
456 457 8.477419 TTCATGATGTATAGACACTCATGGTA 57.523 34.615 25.54 17.94 43.22 3.25
457 458 8.655935 TCATGATGTATAGACACTCATGGTAT 57.344 34.615 25.54 0.37 43.22 2.73
458 459 9.093458 TCATGATGTATAGACACTCATGGTATT 57.907 33.333 25.54 0.00 43.22 1.89
459 460 9.363763 CATGATGTATAGACACTCATGGTATTC 57.636 37.037 22.10 4.93 41.64 1.75
460 461 8.712228 TGATGTATAGACACTCATGGTATTCT 57.288 34.615 0.00 0.00 38.76 2.40
461 462 9.147732 TGATGTATAGACACTCATGGTATTCTT 57.852 33.333 0.00 0.00 38.76 2.52
464 465 9.642343 TGTATAGACACTCATGGTATTCTTAGT 57.358 33.333 0.00 0.00 0.00 2.24
465 466 9.900710 GTATAGACACTCATGGTATTCTTAGTG 57.099 37.037 5.61 5.61 40.08 2.74
466 467 8.768501 ATAGACACTCATGGTATTCTTAGTGA 57.231 34.615 12.35 0.00 38.14 3.41
467 468 7.482169 AGACACTCATGGTATTCTTAGTGAA 57.518 36.000 12.35 0.00 38.14 3.18
468 469 7.551585 AGACACTCATGGTATTCTTAGTGAAG 58.448 38.462 12.35 0.00 38.14 3.02
469 470 7.397476 AGACACTCATGGTATTCTTAGTGAAGA 59.603 37.037 12.35 0.00 40.04 2.87
484 485 9.677567 TCTTAGTGAAGAAAATACAAATGCAAC 57.322 29.630 0.00 0.00 38.80 4.17
485 486 8.810652 TTAGTGAAGAAAATACAAATGCAACC 57.189 30.769 0.00 0.00 0.00 3.77
486 487 6.815089 AGTGAAGAAAATACAAATGCAACCA 58.185 32.000 0.00 0.00 0.00 3.67
487 488 7.444299 AGTGAAGAAAATACAAATGCAACCAT 58.556 30.769 0.00 0.00 0.00 3.55
488 489 8.584157 AGTGAAGAAAATACAAATGCAACCATA 58.416 29.630 0.00 0.00 0.00 2.74
489 490 8.647226 GTGAAGAAAATACAAATGCAACCATAC 58.353 33.333 0.00 0.00 0.00 2.39
490 491 7.816995 TGAAGAAAATACAAATGCAACCATACC 59.183 33.333 0.00 0.00 0.00 2.73
491 492 7.238486 AGAAAATACAAATGCAACCATACCA 57.762 32.000 0.00 0.00 0.00 3.25
492 493 7.850193 AGAAAATACAAATGCAACCATACCAT 58.150 30.769 0.00 0.00 0.00 3.55
493 494 8.320617 AGAAAATACAAATGCAACCATACCATT 58.679 29.630 0.00 0.00 0.00 3.16
494 495 8.491331 AAAATACAAATGCAACCATACCATTC 57.509 30.769 0.00 0.00 0.00 2.67
495 496 6.788598 ATACAAATGCAACCATACCATTCA 57.211 33.333 0.00 0.00 0.00 2.57
496 497 5.075858 ACAAATGCAACCATACCATTCAG 57.924 39.130 0.00 0.00 0.00 3.02
497 498 4.527816 ACAAATGCAACCATACCATTCAGT 59.472 37.500 0.00 0.00 0.00 3.41
498 499 5.714333 ACAAATGCAACCATACCATTCAGTA 59.286 36.000 0.00 0.00 0.00 2.74
499 500 6.210385 ACAAATGCAACCATACCATTCAGTAA 59.790 34.615 0.00 0.00 0.00 2.24
500 501 6.849085 AATGCAACCATACCATTCAGTAAA 57.151 33.333 0.00 0.00 0.00 2.01
501 502 5.637006 TGCAACCATACCATTCAGTAAAC 57.363 39.130 0.00 0.00 0.00 2.01
502 503 5.073428 TGCAACCATACCATTCAGTAAACA 58.927 37.500 0.00 0.00 0.00 2.83
503 504 5.182950 TGCAACCATACCATTCAGTAAACAG 59.817 40.000 0.00 0.00 0.00 3.16
504 505 5.183140 GCAACCATACCATTCAGTAAACAGT 59.817 40.000 0.00 0.00 0.00 3.55
505 506 6.611381 CAACCATACCATTCAGTAAACAGTG 58.389 40.000 0.00 0.00 0.00 3.66
506 507 5.876357 ACCATACCATTCAGTAAACAGTGT 58.124 37.500 0.00 0.00 0.00 3.55
507 508 6.303839 ACCATACCATTCAGTAAACAGTGTT 58.696 36.000 1.64 1.64 0.00 3.32
508 509 6.775629 ACCATACCATTCAGTAAACAGTGTTT 59.224 34.615 23.85 23.85 0.00 2.83
509 510 7.286775 ACCATACCATTCAGTAAACAGTGTTTT 59.713 33.333 25.35 6.84 0.00 2.43
510 511 8.141268 CCATACCATTCAGTAAACAGTGTTTTT 58.859 33.333 25.35 12.25 0.00 1.94
540 541 6.753897 AGCTTCGATTTTGTCATTTTTGTC 57.246 33.333 0.00 0.00 0.00 3.18
541 542 5.691754 AGCTTCGATTTTGTCATTTTTGTCC 59.308 36.000 0.00 0.00 0.00 4.02
542 543 5.461737 GCTTCGATTTTGTCATTTTTGTCCA 59.538 36.000 0.00 0.00 0.00 4.02
543 544 6.346040 GCTTCGATTTTGTCATTTTTGTCCAG 60.346 38.462 0.00 0.00 0.00 3.86
544 545 6.384258 TCGATTTTGTCATTTTTGTCCAGA 57.616 33.333 0.00 0.00 0.00 3.86
545 546 6.980593 TCGATTTTGTCATTTTTGTCCAGAT 58.019 32.000 0.00 0.00 0.00 2.90
546 547 7.432869 TCGATTTTGTCATTTTTGTCCAGATT 58.567 30.769 0.00 0.00 0.00 2.40
547 548 8.572185 TCGATTTTGTCATTTTTGTCCAGATTA 58.428 29.630 0.00 0.00 0.00 1.75
548 549 9.357652 CGATTTTGTCATTTTTGTCCAGATTAT 57.642 29.630 0.00 0.00 0.00 1.28
552 553 9.859427 TTTGTCATTTTTGTCCAGATTATCATC 57.141 29.630 0.00 0.00 0.00 2.92
553 554 8.578448 TGTCATTTTTGTCCAGATTATCATCA 57.422 30.769 0.00 0.00 0.00 3.07
554 555 9.022884 TGTCATTTTTGTCCAGATTATCATCAA 57.977 29.630 0.00 0.00 0.00 2.57
557 558 9.811995 CATTTTTGTCCAGATTATCATCAATGT 57.188 29.630 0.00 0.00 0.00 2.71
558 559 9.811995 ATTTTTGTCCAGATTATCATCAATGTG 57.188 29.630 0.00 0.00 0.00 3.21
559 560 8.578448 TTTTGTCCAGATTATCATCAATGTGA 57.422 30.769 0.00 0.00 32.38 3.58
560 561 8.756486 TTTGTCCAGATTATCATCAATGTGAT 57.244 30.769 0.00 4.34 41.49 3.06
561 562 8.756486 TTGTCCAGATTATCATCAATGTGATT 57.244 30.769 0.00 0.00 39.45 2.57
562 563 8.756486 TGTCCAGATTATCATCAATGTGATTT 57.244 30.769 0.00 0.00 39.45 2.17
563 564 9.850198 TGTCCAGATTATCATCAATGTGATTTA 57.150 29.630 0.00 0.00 39.45 1.40
566 567 9.569167 CCAGATTATCATCAATGTGATTTATGC 57.431 33.333 0.00 0.00 39.45 3.14
567 568 9.569167 CAGATTATCATCAATGTGATTTATGCC 57.431 33.333 0.00 0.00 39.45 4.40
568 569 9.304335 AGATTATCATCAATGTGATTTATGCCA 57.696 29.630 0.00 0.00 39.45 4.92
569 570 9.569167 GATTATCATCAATGTGATTTATGCCAG 57.431 33.333 4.25 0.00 39.45 4.85
570 571 6.971726 ATCATCAATGTGATTTATGCCAGT 57.028 33.333 0.00 0.00 34.28 4.00
571 572 6.778834 TCATCAATGTGATTTATGCCAGTT 57.221 33.333 0.00 0.00 34.28 3.16
572 573 6.566141 TCATCAATGTGATTTATGCCAGTTG 58.434 36.000 0.00 0.00 34.28 3.16
573 574 6.377712 TCATCAATGTGATTTATGCCAGTTGA 59.622 34.615 0.00 0.00 34.28 3.18
574 575 5.953183 TCAATGTGATTTATGCCAGTTGAC 58.047 37.500 0.00 0.00 0.00 3.18
575 576 5.711506 TCAATGTGATTTATGCCAGTTGACT 59.288 36.000 0.00 0.00 0.00 3.41
576 577 6.883756 TCAATGTGATTTATGCCAGTTGACTA 59.116 34.615 0.00 0.00 0.00 2.59
577 578 7.557358 TCAATGTGATTTATGCCAGTTGACTAT 59.443 33.333 0.00 0.00 0.00 2.12
578 579 6.682423 TGTGATTTATGCCAGTTGACTATG 57.318 37.500 0.00 0.00 0.00 2.23
579 580 6.179756 TGTGATTTATGCCAGTTGACTATGT 58.820 36.000 0.00 0.00 0.00 2.29
580 581 7.334858 TGTGATTTATGCCAGTTGACTATGTA 58.665 34.615 0.00 0.00 0.00 2.29
581 582 7.992608 TGTGATTTATGCCAGTTGACTATGTAT 59.007 33.333 0.00 0.00 0.00 2.29
582 583 9.489084 GTGATTTATGCCAGTTGACTATGTATA 57.511 33.333 0.00 0.00 0.00 1.47
650 651 3.675467 CTCTTTATAAAGGGTGTGCGC 57.325 47.619 22.11 0.00 36.67 6.09
651 652 2.004017 TCTTTATAAAGGGTGTGCGCG 58.996 47.619 22.11 0.00 36.67 6.86
652 653 0.448593 TTTATAAAGGGTGTGCGCGC 59.551 50.000 27.26 27.26 0.00 6.86
653 654 0.673956 TTATAAAGGGTGTGCGCGCA 60.674 50.000 33.09 33.09 0.00 6.09
662 663 2.474712 GTGCGCGCACCTAAGTTC 59.525 61.111 45.62 24.13 40.79 3.01
663 664 2.029815 TGCGCGCACCTAAGTTCA 59.970 55.556 33.09 2.14 0.00 3.18
664 665 2.314647 TGCGCGCACCTAAGTTCAC 61.315 57.895 33.09 0.00 0.00 3.18
665 666 3.023591 GCGCGCACCTAAGTTCACC 62.024 63.158 29.10 0.00 0.00 4.02
666 667 1.666553 CGCGCACCTAAGTTCACCA 60.667 57.895 8.75 0.00 0.00 4.17
667 668 1.225376 CGCGCACCTAAGTTCACCAA 61.225 55.000 8.75 0.00 0.00 3.67
668 669 0.948678 GCGCACCTAAGTTCACCAAA 59.051 50.000 0.30 0.00 0.00 3.28
669 670 1.539827 GCGCACCTAAGTTCACCAAAT 59.460 47.619 0.30 0.00 0.00 2.32
670 671 2.414161 GCGCACCTAAGTTCACCAAATC 60.414 50.000 0.30 0.00 0.00 2.17
671 672 3.074412 CGCACCTAAGTTCACCAAATCT 58.926 45.455 0.00 0.00 0.00 2.40
672 673 3.120199 CGCACCTAAGTTCACCAAATCTG 60.120 47.826 0.00 0.00 0.00 2.90
673 674 3.366374 GCACCTAAGTTCACCAAATCTGC 60.366 47.826 0.00 0.00 0.00 4.26
674 675 3.074412 ACCTAAGTTCACCAAATCTGCG 58.926 45.455 0.00 0.00 0.00 5.18
675 676 3.074412 CCTAAGTTCACCAAATCTGCGT 58.926 45.455 0.00 0.00 0.00 5.24
676 677 3.125316 CCTAAGTTCACCAAATCTGCGTC 59.875 47.826 0.00 0.00 0.00 5.19
677 678 1.523758 AGTTCACCAAATCTGCGTCC 58.476 50.000 0.00 0.00 0.00 4.79
678 679 0.521735 GTTCACCAAATCTGCGTCCC 59.478 55.000 0.00 0.00 0.00 4.46
679 680 0.400213 TTCACCAAATCTGCGTCCCT 59.600 50.000 0.00 0.00 0.00 4.20
680 681 0.036388 TCACCAAATCTGCGTCCCTC 60.036 55.000 0.00 0.00 0.00 4.30
681 682 0.036010 CACCAAATCTGCGTCCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
682 683 0.036010 ACCAAATCTGCGTCCCTCTG 60.036 55.000 0.00 0.00 0.00 3.35
683 684 0.036010 CCAAATCTGCGTCCCTCTGT 60.036 55.000 0.00 0.00 0.00 3.41
684 685 1.081892 CAAATCTGCGTCCCTCTGTG 58.918 55.000 0.00 0.00 0.00 3.66
685 686 0.687354 AAATCTGCGTCCCTCTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
686 687 0.036952 AATCTGCGTCCCTCTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
687 688 1.188219 ATCTGCGTCCCTCTGTGTGT 61.188 55.000 0.00 0.00 0.00 3.72
688 689 1.665916 CTGCGTCCCTCTGTGTGTG 60.666 63.158 0.00 0.00 0.00 3.82
689 690 2.369257 CTGCGTCCCTCTGTGTGTGT 62.369 60.000 0.00 0.00 0.00 3.72
690 691 1.664965 GCGTCCCTCTGTGTGTGTC 60.665 63.158 0.00 0.00 0.00 3.67
691 692 1.739667 CGTCCCTCTGTGTGTGTCA 59.260 57.895 0.00 0.00 0.00 3.58
692 693 0.104120 CGTCCCTCTGTGTGTGTCAA 59.896 55.000 0.00 0.00 0.00 3.18
693 694 1.869754 CGTCCCTCTGTGTGTGTCAAG 60.870 57.143 0.00 0.00 0.00 3.02
694 695 1.412710 GTCCCTCTGTGTGTGTCAAGA 59.587 52.381 0.00 0.00 0.00 3.02
695 696 1.412710 TCCCTCTGTGTGTGTCAAGAC 59.587 52.381 0.00 0.00 0.00 3.01
748 750 2.010145 CGAATCACGTGGAAGTGGAT 57.990 50.000 17.00 0.00 42.10 3.41
750 752 2.009774 GAATCACGTGGAAGTGGATGG 58.990 52.381 17.00 0.00 42.10 3.51
755 757 0.742281 CGTGGAAGTGGATGGAGCTG 60.742 60.000 0.00 0.00 0.00 4.24
771 777 0.459585 GCTGATTTCCTCCACGCGTA 60.460 55.000 13.44 0.00 0.00 4.42
847 855 1.280133 CATCCCAAGACAGGAGCAAGA 59.720 52.381 0.00 0.00 36.67 3.02
909 921 0.247736 CCGGAAGTTGGTCTCCTCAG 59.752 60.000 0.00 0.00 0.00 3.35
972 984 2.106683 CGCCGGTCAATCACCTTCC 61.107 63.158 1.90 0.00 44.21 3.46
1012 1024 0.179034 GTGAGACATGGAGATGGCCC 60.179 60.000 0.00 0.00 38.57 5.80
1044 1056 1.656818 ATGGAAAGAATGGCGGCGTG 61.657 55.000 9.37 0.00 0.00 5.34
1099 1111 2.910479 TGACGGTGGAGCACGAGT 60.910 61.111 0.00 0.00 34.83 4.18
1368 1380 1.197721 ACCGTTGGTAAGTCGTCGTAG 59.802 52.381 0.00 0.00 32.11 3.51
1430 1449 2.040714 TGCAGTCAACGTACGTACTG 57.959 50.000 32.46 32.46 37.61 2.74
1431 1450 1.334054 GCAGTCAACGTACGTACTGG 58.666 55.000 34.90 23.64 36.04 4.00
1432 1451 1.069022 GCAGTCAACGTACGTACTGGA 60.069 52.381 34.90 22.85 36.04 3.86
1433 1452 2.578495 CAGTCAACGTACGTACTGGAC 58.422 52.381 30.56 26.88 33.45 4.02
1434 1453 2.225019 CAGTCAACGTACGTACTGGACT 59.775 50.000 30.56 28.12 33.45 3.85
1600 1619 3.567797 GAGCCGTTCATCCGCAGC 61.568 66.667 0.00 0.00 0.00 5.25
1623 1642 0.245539 TCCGTTTTCCTGCTCGGTAG 59.754 55.000 0.00 0.00 42.95 3.18
1637 1656 1.811860 GGTAGGTATCCACGCGTGT 59.188 57.895 34.81 21.68 0.00 4.49
1651 1670 3.610677 CACGCGTGTCTGTACATGAATTA 59.389 43.478 30.50 0.00 44.09 1.40
2170 2207 2.801996 TACAAGAACGTCGGCGCG 60.802 61.111 10.50 19.04 42.83 6.86
2348 2385 0.731514 CGCAATGACTACGTCGTGGT 60.732 55.000 14.73 14.73 34.95 4.16
2349 2386 1.425412 GCAATGACTACGTCGTGGTT 58.575 50.000 15.92 0.00 34.95 3.67
2371 2408 4.814294 GAGTTCGCCGTGGCCGAT 62.814 66.667 5.08 0.00 37.98 4.18
2647 2687 2.508526 GAGGAAGCACATTGAACAGGT 58.491 47.619 0.00 0.00 0.00 4.00
3071 3117 6.071728 CCAGTAATTGAGCAAAAATCTCCACT 60.072 38.462 0.00 0.00 0.00 4.00
3206 3254 5.009911 TGAACAAGTTTTCTATGTGCATGCT 59.990 36.000 20.33 0.40 27.62 3.79
3228 3277 8.047413 TGCTAAATATCATGGCAATATGACAG 57.953 34.615 0.00 0.00 39.76 3.51
3560 4096 6.115446 CCTAGAAGAATACAAAGGTGCATCA 58.885 40.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.915629 CTCTAAGTTAGTACAAAGTTGAGTCAT 57.084 33.333 9.71 0.00 0.00 3.06
13 14 8.358148 CCTCTAAGTTAGTACAAAGTTGAGTCA 58.642 37.037 9.71 0.00 0.00 3.41
14 15 7.813627 CCCTCTAAGTTAGTACAAAGTTGAGTC 59.186 40.741 9.71 0.00 0.00 3.36
15 16 7.508296 TCCCTCTAAGTTAGTACAAAGTTGAGT 59.492 37.037 9.71 0.00 0.00 3.41
16 17 7.893658 TCCCTCTAAGTTAGTACAAAGTTGAG 58.106 38.462 9.71 0.00 0.00 3.02
17 18 7.508296 ACTCCCTCTAAGTTAGTACAAAGTTGA 59.492 37.037 9.71 0.00 0.00 3.18
18 19 7.668492 ACTCCCTCTAAGTTAGTACAAAGTTG 58.332 38.462 9.71 0.00 0.00 3.16
19 20 7.852550 ACTCCCTCTAAGTTAGTACAAAGTT 57.147 36.000 9.71 0.00 0.00 2.66
59 60 9.227777 ACGAGGCAAAGTTCTATATAAAAGTTT 57.772 29.630 0.00 0.00 0.00 2.66
60 61 8.788325 ACGAGGCAAAGTTCTATATAAAAGTT 57.212 30.769 0.00 0.00 0.00 2.66
61 62 8.258708 AGACGAGGCAAAGTTCTATATAAAAGT 58.741 33.333 0.00 0.00 0.00 2.66
62 63 8.649973 AGACGAGGCAAAGTTCTATATAAAAG 57.350 34.615 0.00 0.00 0.00 2.27
63 64 9.095065 GAAGACGAGGCAAAGTTCTATATAAAA 57.905 33.333 0.00 0.00 0.00 1.52
64 65 8.475639 AGAAGACGAGGCAAAGTTCTATATAAA 58.524 33.333 0.00 0.00 0.00 1.40
65 66 8.008513 AGAAGACGAGGCAAAGTTCTATATAA 57.991 34.615 0.00 0.00 0.00 0.98
66 67 7.584122 AGAAGACGAGGCAAAGTTCTATATA 57.416 36.000 0.00 0.00 0.00 0.86
67 68 6.472686 AGAAGACGAGGCAAAGTTCTATAT 57.527 37.500 0.00 0.00 0.00 0.86
68 69 5.916661 AGAAGACGAGGCAAAGTTCTATA 57.083 39.130 0.00 0.00 0.00 1.31
69 70 4.810191 AGAAGACGAGGCAAAGTTCTAT 57.190 40.909 0.00 0.00 0.00 1.98
70 71 5.916661 ATAGAAGACGAGGCAAAGTTCTA 57.083 39.130 0.00 0.00 32.56 2.10
71 72 4.810191 ATAGAAGACGAGGCAAAGTTCT 57.190 40.909 0.00 0.00 0.00 3.01
72 73 6.963049 TTAATAGAAGACGAGGCAAAGTTC 57.037 37.500 0.00 0.00 0.00 3.01
73 74 7.923414 AATTAATAGAAGACGAGGCAAAGTT 57.077 32.000 0.00 0.00 0.00 2.66
74 75 7.390718 ACAAATTAATAGAAGACGAGGCAAAGT 59.609 33.333 0.00 0.00 0.00 2.66
75 76 7.693951 CACAAATTAATAGAAGACGAGGCAAAG 59.306 37.037 0.00 0.00 0.00 2.77
76 77 7.526608 CACAAATTAATAGAAGACGAGGCAAA 58.473 34.615 0.00 0.00 0.00 3.68
77 78 6.403200 GCACAAATTAATAGAAGACGAGGCAA 60.403 38.462 0.00 0.00 0.00 4.52
78 79 5.064707 GCACAAATTAATAGAAGACGAGGCA 59.935 40.000 0.00 0.00 0.00 4.75
79 80 5.064707 TGCACAAATTAATAGAAGACGAGGC 59.935 40.000 0.00 0.00 0.00 4.70
80 81 6.313905 AGTGCACAAATTAATAGAAGACGAGG 59.686 38.462 21.04 0.00 0.00 4.63
81 82 7.295952 AGTGCACAAATTAATAGAAGACGAG 57.704 36.000 21.04 0.00 0.00 4.18
82 83 6.312918 GGAGTGCACAAATTAATAGAAGACGA 59.687 38.462 21.04 0.00 0.00 4.20
83 84 6.092122 TGGAGTGCACAAATTAATAGAAGACG 59.908 38.462 21.04 0.00 0.00 4.18
84 85 7.377766 TGGAGTGCACAAATTAATAGAAGAC 57.622 36.000 21.04 0.00 0.00 3.01
85 86 7.882791 TCTTGGAGTGCACAAATTAATAGAAGA 59.117 33.333 21.04 8.13 0.00 2.87
86 87 8.044060 TCTTGGAGTGCACAAATTAATAGAAG 57.956 34.615 21.04 6.07 0.00 2.85
87 88 7.994425 TCTTGGAGTGCACAAATTAATAGAA 57.006 32.000 21.04 0.00 0.00 2.10
88 89 7.994425 TTCTTGGAGTGCACAAATTAATAGA 57.006 32.000 21.04 7.42 0.00 1.98
89 90 8.299570 AGTTTCTTGGAGTGCACAAATTAATAG 58.700 33.333 21.04 5.19 0.00 1.73
90 91 8.177119 AGTTTCTTGGAGTGCACAAATTAATA 57.823 30.769 21.04 0.00 0.00 0.98
91 92 7.054491 AGTTTCTTGGAGTGCACAAATTAAT 57.946 32.000 21.04 0.00 0.00 1.40
92 93 6.463995 AGTTTCTTGGAGTGCACAAATTAA 57.536 33.333 21.04 5.80 0.00 1.40
93 94 6.463995 AAGTTTCTTGGAGTGCACAAATTA 57.536 33.333 21.04 0.00 0.00 1.40
94 95 5.343307 AAGTTTCTTGGAGTGCACAAATT 57.657 34.783 21.04 5.15 0.00 1.82
95 96 5.343307 AAAGTTTCTTGGAGTGCACAAAT 57.657 34.783 21.04 0.00 0.00 2.32
96 97 4.799564 AAAGTTTCTTGGAGTGCACAAA 57.200 36.364 21.04 6.65 0.00 2.83
97 98 4.799564 AAAAGTTTCTTGGAGTGCACAA 57.200 36.364 21.04 3.62 0.00 3.33
98 99 5.827797 AGATAAAAGTTTCTTGGAGTGCACA 59.172 36.000 21.04 0.00 0.00 4.57
99 100 6.319141 AGATAAAAGTTTCTTGGAGTGCAC 57.681 37.500 9.40 9.40 0.00 4.57
100 101 8.103305 AGATAGATAAAAGTTTCTTGGAGTGCA 58.897 33.333 0.00 0.00 0.00 4.57
101 102 8.499403 AGATAGATAAAAGTTTCTTGGAGTGC 57.501 34.615 0.00 0.00 0.00 4.40
128 129 9.088987 GCCCCTTTGGATCTTTTTATATTGATA 57.911 33.333 0.00 0.00 35.39 2.15
129 130 7.568366 TGCCCCTTTGGATCTTTTTATATTGAT 59.432 33.333 0.00 0.00 35.39 2.57
130 131 6.900186 TGCCCCTTTGGATCTTTTTATATTGA 59.100 34.615 0.00 0.00 35.39 2.57
131 132 7.069826 TCTGCCCCTTTGGATCTTTTTATATTG 59.930 37.037 0.00 0.00 35.39 1.90
132 133 7.132128 TCTGCCCCTTTGGATCTTTTTATATT 58.868 34.615 0.00 0.00 35.39 1.28
133 134 6.682537 TCTGCCCCTTTGGATCTTTTTATAT 58.317 36.000 0.00 0.00 35.39 0.86
134 135 6.086011 TCTGCCCCTTTGGATCTTTTTATA 57.914 37.500 0.00 0.00 35.39 0.98
135 136 4.946646 TCTGCCCCTTTGGATCTTTTTAT 58.053 39.130 0.00 0.00 35.39 1.40
136 137 4.396357 TCTGCCCCTTTGGATCTTTTTA 57.604 40.909 0.00 0.00 35.39 1.52
137 138 3.258722 TCTGCCCCTTTGGATCTTTTT 57.741 42.857 0.00 0.00 35.39 1.94
138 139 2.999185 TCTGCCCCTTTGGATCTTTT 57.001 45.000 0.00 0.00 35.39 2.27
139 140 2.358615 GGATCTGCCCCTTTGGATCTTT 60.359 50.000 0.00 0.00 36.02 2.52
140 141 1.216427 GGATCTGCCCCTTTGGATCTT 59.784 52.381 0.00 0.00 36.02 2.40
141 142 0.849417 GGATCTGCCCCTTTGGATCT 59.151 55.000 0.00 0.00 36.02 2.75
142 143 0.552848 TGGATCTGCCCCTTTGGATC 59.447 55.000 0.00 0.00 35.39 3.36
143 144 1.009997 TTGGATCTGCCCCTTTGGAT 58.990 50.000 0.00 0.00 35.39 3.41
144 145 0.039618 GTTGGATCTGCCCCTTTGGA 59.960 55.000 0.00 0.00 35.39 3.53
145 146 0.040204 AGTTGGATCTGCCCCTTTGG 59.960 55.000 0.00 0.00 34.97 3.28
146 147 2.806945 TAGTTGGATCTGCCCCTTTG 57.193 50.000 0.00 0.00 34.97 2.77
147 148 3.529319 AGATTAGTTGGATCTGCCCCTTT 59.471 43.478 0.00 0.00 32.79 3.11
148 149 3.126453 AGATTAGTTGGATCTGCCCCTT 58.874 45.455 0.00 0.00 32.79 3.95
149 150 2.708325 GAGATTAGTTGGATCTGCCCCT 59.292 50.000 0.00 0.00 34.13 4.79
150 151 2.548920 CGAGATTAGTTGGATCTGCCCC 60.549 54.545 0.00 0.00 34.13 5.80
151 152 2.548920 CCGAGATTAGTTGGATCTGCCC 60.549 54.545 0.00 0.00 34.13 5.36
152 153 2.760374 CCGAGATTAGTTGGATCTGCC 58.240 52.381 0.00 0.00 34.13 4.85
153 154 2.139118 GCCGAGATTAGTTGGATCTGC 58.861 52.381 0.00 0.00 34.13 4.26
154 155 2.103094 TGGCCGAGATTAGTTGGATCTG 59.897 50.000 0.00 0.00 34.13 2.90
155 156 2.398588 TGGCCGAGATTAGTTGGATCT 58.601 47.619 0.00 0.00 36.60 2.75
156 157 2.910688 TGGCCGAGATTAGTTGGATC 57.089 50.000 0.00 0.00 0.00 3.36
157 158 2.705658 TGATGGCCGAGATTAGTTGGAT 59.294 45.455 0.00 0.00 0.00 3.41
158 159 2.115427 TGATGGCCGAGATTAGTTGGA 58.885 47.619 0.00 0.00 0.00 3.53
159 160 2.620251 TGATGGCCGAGATTAGTTGG 57.380 50.000 0.00 0.00 0.00 3.77
160 161 4.576053 TGATTTGATGGCCGAGATTAGTTG 59.424 41.667 0.00 0.00 0.00 3.16
161 162 4.780815 TGATTTGATGGCCGAGATTAGTT 58.219 39.130 0.00 0.00 0.00 2.24
162 163 4.422073 TGATTTGATGGCCGAGATTAGT 57.578 40.909 0.00 0.00 0.00 2.24
163 164 4.758674 ACATGATTTGATGGCCGAGATTAG 59.241 41.667 0.00 0.00 0.00 1.73
164 165 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
165 166 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
166 167 3.144506 GACATGATTTGATGGCCGAGAT 58.855 45.455 0.00 0.00 0.00 2.75
167 168 2.093021 TGACATGATTTGATGGCCGAGA 60.093 45.455 0.00 0.00 29.16 4.04
168 169 2.291365 TGACATGATTTGATGGCCGAG 58.709 47.619 0.00 0.00 29.16 4.63
169 170 2.416680 TGACATGATTTGATGGCCGA 57.583 45.000 0.00 0.00 29.16 5.54
170 171 3.551454 GGATTGACATGATTTGATGGCCG 60.551 47.826 0.00 0.00 29.16 6.13
171 172 3.385433 TGGATTGACATGATTTGATGGCC 59.615 43.478 0.00 0.00 29.16 5.36
172 173 4.659111 TGGATTGACATGATTTGATGGC 57.341 40.909 0.00 0.00 0.00 4.40
173 174 5.038683 CGTTGGATTGACATGATTTGATGG 58.961 41.667 0.00 0.00 0.00 3.51
174 175 5.740569 GTCGTTGGATTGACATGATTTGATG 59.259 40.000 0.00 0.00 35.20 3.07
175 176 5.163622 GGTCGTTGGATTGACATGATTTGAT 60.164 40.000 0.00 0.00 36.83 2.57
176 177 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
177 178 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
178 179 4.335416 AGGTCGTTGGATTGACATGATTT 58.665 39.130 0.00 0.00 36.83 2.17
179 180 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
180 181 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
181 182 3.767131 TCTAGGTCGTTGGATTGACATGA 59.233 43.478 0.00 0.00 36.83 3.07
182 183 3.865745 GTCTAGGTCGTTGGATTGACATG 59.134 47.826 0.00 0.00 36.83 3.21
183 184 3.769844 AGTCTAGGTCGTTGGATTGACAT 59.230 43.478 0.00 0.00 36.83 3.06
184 185 3.056821 CAGTCTAGGTCGTTGGATTGACA 60.057 47.826 0.00 0.00 36.83 3.58
185 186 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
186 187 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
187 188 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
188 189 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
189 190 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
190 191 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
191 192 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
192 193 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
193 194 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
194 195 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
195 196 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
196 197 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
197 198 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
198 199 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
199 200 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
200 201 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
201 202 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
202 203 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
203 204 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
204 205 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
205 206 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
206 207 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
207 208 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
208 209 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
209 210 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
210 211 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
211 212 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
214 215 1.818221 AAACGTGTTGAGCGCTCGAC 61.818 55.000 39.44 39.44 42.86 4.20
215 216 0.318022 TAAACGTGTTGAGCGCTCGA 60.318 50.000 30.75 27.40 0.00 4.04
216 217 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
217 218 0.179248 GCTAAACGTGTTGAGCGCTC 60.179 55.000 30.42 30.42 37.32 5.03
218 219 1.860078 GCTAAACGTGTTGAGCGCT 59.140 52.632 11.27 11.27 37.32 5.92
219 220 4.417240 GCTAAACGTGTTGAGCGC 57.583 55.556 6.34 0.00 37.32 5.92
230 231 5.511729 GCATGAAATTAACTCCACGCTAAAC 59.488 40.000 0.00 0.00 0.00 2.01
231 232 5.392595 GGCATGAAATTAACTCCACGCTAAA 60.393 40.000 0.00 0.00 0.00 1.85
232 233 4.095782 GGCATGAAATTAACTCCACGCTAA 59.904 41.667 0.00 0.00 0.00 3.09
233 234 3.625764 GGCATGAAATTAACTCCACGCTA 59.374 43.478 0.00 0.00 0.00 4.26
234 235 2.423538 GGCATGAAATTAACTCCACGCT 59.576 45.455 0.00 0.00 0.00 5.07
235 236 2.163412 TGGCATGAAATTAACTCCACGC 59.837 45.455 0.00 0.00 0.00 5.34
236 237 4.433186 TTGGCATGAAATTAACTCCACG 57.567 40.909 0.00 0.00 0.00 4.94
247 248 9.695526 GTGATTAGCATTATATTTGGCATGAAA 57.304 29.630 0.00 0.00 0.00 2.69
248 249 8.858094 TGTGATTAGCATTATATTTGGCATGAA 58.142 29.630 0.00 0.00 0.00 2.57
249 250 8.406730 TGTGATTAGCATTATATTTGGCATGA 57.593 30.769 0.00 0.00 0.00 3.07
260 261 8.998377 TGCGTGTTATTATGTGATTAGCATTAT 58.002 29.630 0.00 0.00 0.00 1.28
261 262 8.371770 TGCGTGTTATTATGTGATTAGCATTA 57.628 30.769 0.00 0.00 0.00 1.90
262 263 7.258022 TGCGTGTTATTATGTGATTAGCATT 57.742 32.000 0.00 0.00 0.00 3.56
263 264 6.859420 TGCGTGTTATTATGTGATTAGCAT 57.141 33.333 0.00 0.00 0.00 3.79
264 265 6.670077 TTGCGTGTTATTATGTGATTAGCA 57.330 33.333 0.00 0.00 0.00 3.49
265 266 9.658475 TTATTTGCGTGTTATTATGTGATTAGC 57.342 29.630 0.00 0.00 0.00 3.09
283 284 9.849607 CGCATATTAAGTAGGATATTATTTGCG 57.150 33.333 0.00 0.00 0.00 4.85
284 285 9.651718 GCGCATATTAAGTAGGATATTATTTGC 57.348 33.333 0.30 0.00 0.00 3.68
288 289 8.993121 GCATGCGCATATTAAGTAGGATATTAT 58.007 33.333 24.84 0.00 38.36 1.28
289 290 7.984617 TGCATGCGCATATTAAGTAGGATATTA 59.015 33.333 24.84 0.00 45.36 0.98
290 291 6.823182 TGCATGCGCATATTAAGTAGGATATT 59.177 34.615 24.84 0.00 45.36 1.28
291 292 6.348498 TGCATGCGCATATTAAGTAGGATAT 58.652 36.000 24.84 0.00 45.36 1.63
292 293 5.729510 TGCATGCGCATATTAAGTAGGATA 58.270 37.500 24.84 0.00 45.36 2.59
293 294 4.578871 TGCATGCGCATATTAAGTAGGAT 58.421 39.130 24.84 0.00 45.36 3.24
294 295 4.001618 TGCATGCGCATATTAAGTAGGA 57.998 40.909 24.84 6.37 45.36 2.94
307 308 4.213270 TGGAAGTATATTAAGTGCATGCGC 59.787 41.667 23.64 23.64 39.24 6.09
308 309 5.922739 TGGAAGTATATTAAGTGCATGCG 57.077 39.130 14.09 0.00 0.00 4.73
319 320 9.515020 CAATGCACGTTAATTTGGAAGTATATT 57.485 29.630 0.00 0.00 0.00 1.28
320 321 7.647715 GCAATGCACGTTAATTTGGAAGTATAT 59.352 33.333 0.00 0.00 0.00 0.86
321 322 6.970043 GCAATGCACGTTAATTTGGAAGTATA 59.030 34.615 0.00 0.00 0.00 1.47
322 323 5.804979 GCAATGCACGTTAATTTGGAAGTAT 59.195 36.000 0.00 0.00 0.00 2.12
323 324 5.157781 GCAATGCACGTTAATTTGGAAGTA 58.842 37.500 0.00 0.00 0.00 2.24
324 325 3.987220 GCAATGCACGTTAATTTGGAAGT 59.013 39.130 0.00 0.00 0.00 3.01
325 326 3.986572 TGCAATGCACGTTAATTTGGAAG 59.013 39.130 2.72 0.00 31.71 3.46
326 327 3.982475 TGCAATGCACGTTAATTTGGAA 58.018 36.364 2.72 0.00 31.71 3.53
327 328 3.650070 TGCAATGCACGTTAATTTGGA 57.350 38.095 2.72 0.00 31.71 3.53
339 340 5.220758 CCAGTTAATGTATACGTGCAATGCA 60.221 40.000 2.72 2.72 35.60 3.96
340 341 5.204833 CCAGTTAATGTATACGTGCAATGC 58.795 41.667 0.00 0.00 0.00 3.56
341 342 6.358118 ACCAGTTAATGTATACGTGCAATG 57.642 37.500 0.00 0.00 0.00 2.82
342 343 7.713507 ACATACCAGTTAATGTATACGTGCAAT 59.286 33.333 0.00 0.00 34.61 3.56
343 344 7.042950 ACATACCAGTTAATGTATACGTGCAA 58.957 34.615 0.00 0.00 34.61 4.08
344 345 6.575267 ACATACCAGTTAATGTATACGTGCA 58.425 36.000 0.00 0.00 34.61 4.57
345 346 7.223193 TGAACATACCAGTTAATGTATACGTGC 59.777 37.037 0.00 0.00 35.30 5.34
346 347 8.637281 TGAACATACCAGTTAATGTATACGTG 57.363 34.615 0.00 0.00 35.30 4.49
347 348 9.656040 TTTGAACATACCAGTTAATGTATACGT 57.344 29.630 0.00 0.00 35.30 3.57
366 367 9.250624 CCGTGGTATTTTTAGAAAATTTGAACA 57.749 29.630 4.21 0.00 0.00 3.18
367 368 9.251792 ACCGTGGTATTTTTAGAAAATTTGAAC 57.748 29.630 4.21 0.00 0.00 3.18
374 375 8.513774 GGTTCATACCGTGGTATTTTTAGAAAA 58.486 33.333 8.84 0.00 39.07 2.29
375 376 8.042944 GGTTCATACCGTGGTATTTTTAGAAA 57.957 34.615 8.84 0.00 39.07 2.52
376 377 7.614124 GGTTCATACCGTGGTATTTTTAGAA 57.386 36.000 8.84 6.72 39.07 2.10
391 392 6.352516 AGAATGATCAACTGAGGTTCATACC 58.647 40.000 0.00 0.00 45.39 2.73
392 393 8.200792 AGTAGAATGATCAACTGAGGTTCATAC 58.799 37.037 0.00 2.86 32.73 2.39
393 394 8.311395 AGTAGAATGATCAACTGAGGTTCATA 57.689 34.615 0.00 0.00 32.73 2.15
394 395 7.093156 TGAGTAGAATGATCAACTGAGGTTCAT 60.093 37.037 0.00 0.00 32.73 2.57
395 396 6.211384 TGAGTAGAATGATCAACTGAGGTTCA 59.789 38.462 0.00 0.00 32.73 3.18
396 397 6.533367 GTGAGTAGAATGATCAACTGAGGTTC 59.467 42.308 0.00 0.00 32.73 3.62
397 398 6.014242 TGTGAGTAGAATGATCAACTGAGGTT 60.014 38.462 0.00 0.00 35.86 3.50
398 399 5.481824 TGTGAGTAGAATGATCAACTGAGGT 59.518 40.000 0.00 0.00 0.00 3.85
399 400 5.970592 TGTGAGTAGAATGATCAACTGAGG 58.029 41.667 0.00 0.00 0.00 3.86
400 401 7.010275 CACATGTGAGTAGAATGATCAACTGAG 59.990 40.741 21.64 0.00 0.00 3.35
401 402 6.815142 CACATGTGAGTAGAATGATCAACTGA 59.185 38.462 21.64 0.00 0.00 3.41
402 403 6.815142 TCACATGTGAGTAGAATGATCAACTG 59.185 38.462 24.56 0.00 34.14 3.16
403 404 6.939622 TCACATGTGAGTAGAATGATCAACT 58.060 36.000 24.56 5.25 34.14 3.16
404 405 7.332926 ACTTCACATGTGAGTAGAATGATCAAC 59.667 37.037 26.84 0.00 41.13 3.18
405 406 7.389232 ACTTCACATGTGAGTAGAATGATCAA 58.611 34.615 26.84 10.29 41.13 2.57
406 407 6.939622 ACTTCACATGTGAGTAGAATGATCA 58.060 36.000 26.84 10.46 41.13 2.92
407 408 7.840342 AACTTCACATGTGAGTAGAATGATC 57.160 36.000 26.84 0.00 41.13 2.92
408 409 7.879677 TGAAACTTCACATGTGAGTAGAATGAT 59.120 33.333 26.84 12.14 41.13 2.45
409 410 7.216494 TGAAACTTCACATGTGAGTAGAATGA 58.784 34.615 26.84 12.15 41.13 2.57
410 411 7.425577 TGAAACTTCACATGTGAGTAGAATG 57.574 36.000 26.84 15.67 41.13 2.67
411 412 7.879677 TCATGAAACTTCACATGTGAGTAGAAT 59.120 33.333 26.84 17.25 42.75 2.40
412 413 7.216494 TCATGAAACTTCACATGTGAGTAGAA 58.784 34.615 26.84 14.05 42.75 2.10
413 414 6.758254 TCATGAAACTTCACATGTGAGTAGA 58.242 36.000 26.84 14.37 42.75 2.59
414 415 7.118825 ACATCATGAAACTTCACATGTGAGTAG 59.881 37.037 26.48 23.47 40.15 2.57
415 416 6.936335 ACATCATGAAACTTCACATGTGAGTA 59.064 34.615 26.48 13.71 40.15 2.59
416 417 5.766670 ACATCATGAAACTTCACATGTGAGT 59.233 36.000 26.48 22.26 40.15 3.41
417 418 6.250344 ACATCATGAAACTTCACATGTGAG 57.750 37.500 26.48 21.69 40.15 3.51
418 419 7.926674 ATACATCATGAAACTTCACATGTGA 57.073 32.000 24.56 24.56 41.02 3.58
419 420 9.101655 TCTATACATCATGAAACTTCACATGTG 57.898 33.333 20.18 20.18 41.02 3.21
420 421 9.102757 GTCTATACATCATGAAACTTCACATGT 57.897 33.333 17.04 17.04 42.35 3.21
421 422 9.101655 TGTCTATACATCATGAAACTTCACATG 57.898 33.333 0.00 0.00 43.31 3.21
422 423 9.102757 GTGTCTATACATCATGAAACTTCACAT 57.897 33.333 0.00 0.00 37.76 3.21
423 424 8.314021 AGTGTCTATACATCATGAAACTTCACA 58.686 33.333 0.00 0.00 37.76 3.58
424 425 8.709386 AGTGTCTATACATCATGAAACTTCAC 57.291 34.615 0.00 2.92 37.76 3.18
425 426 8.531146 TGAGTGTCTATACATCATGAAACTTCA 58.469 33.333 0.00 0.00 38.67 3.02
426 427 8.932945 TGAGTGTCTATACATCATGAAACTTC 57.067 34.615 0.00 0.00 38.08 3.01
427 428 9.322773 CATGAGTGTCTATACATCATGAAACTT 57.677 33.333 18.36 0.00 44.20 2.66
428 429 7.930325 CCATGAGTGTCTATACATCATGAAACT 59.070 37.037 21.58 2.54 44.20 2.66
429 430 7.712639 ACCATGAGTGTCTATACATCATGAAAC 59.287 37.037 21.58 0.00 44.20 2.78
430 431 7.795047 ACCATGAGTGTCTATACATCATGAAA 58.205 34.615 21.58 0.00 44.20 2.69
431 432 7.365497 ACCATGAGTGTCTATACATCATGAA 57.635 36.000 21.58 0.00 44.20 2.57
432 433 6.983906 ACCATGAGTGTCTATACATCATGA 57.016 37.500 21.58 0.00 44.20 3.07
433 434 9.363763 GAATACCATGAGTGTCTATACATCATG 57.636 37.037 17.29 17.29 42.96 3.07
434 435 9.319060 AGAATACCATGAGTGTCTATACATCAT 57.681 33.333 0.00 0.00 38.08 2.45
435 436 8.712228 AGAATACCATGAGTGTCTATACATCA 57.288 34.615 0.00 0.00 38.08 3.07
438 439 9.642343 ACTAAGAATACCATGAGTGTCTATACA 57.358 33.333 0.00 0.00 0.00 2.29
439 440 9.900710 CACTAAGAATACCATGAGTGTCTATAC 57.099 37.037 0.00 0.00 31.70 1.47
440 441 9.862149 TCACTAAGAATACCATGAGTGTCTATA 57.138 33.333 0.00 0.00 36.52 1.31
441 442 8.768501 TCACTAAGAATACCATGAGTGTCTAT 57.231 34.615 0.00 0.00 36.52 1.98
442 443 8.589701 TTCACTAAGAATACCATGAGTGTCTA 57.410 34.615 0.00 0.00 36.52 2.59
443 444 7.397476 TCTTCACTAAGAATACCATGAGTGTCT 59.603 37.037 0.00 0.00 38.81 3.41
444 445 7.548097 TCTTCACTAAGAATACCATGAGTGTC 58.452 38.462 0.00 0.00 38.81 3.67
445 446 7.482169 TCTTCACTAAGAATACCATGAGTGT 57.518 36.000 0.00 0.00 38.81 3.55
458 459 9.677567 GTTGCATTTGTATTTTCTTCACTAAGA 57.322 29.630 0.00 0.00 40.03 2.10
459 460 8.915654 GGTTGCATTTGTATTTTCTTCACTAAG 58.084 33.333 0.00 0.00 0.00 2.18
460 461 8.417106 TGGTTGCATTTGTATTTTCTTCACTAA 58.583 29.630 0.00 0.00 0.00 2.24
461 462 7.946207 TGGTTGCATTTGTATTTTCTTCACTA 58.054 30.769 0.00 0.00 0.00 2.74
462 463 6.815089 TGGTTGCATTTGTATTTTCTTCACT 58.185 32.000 0.00 0.00 0.00 3.41
463 464 7.656707 ATGGTTGCATTTGTATTTTCTTCAC 57.343 32.000 0.00 0.00 0.00 3.18
464 465 7.816995 GGTATGGTTGCATTTGTATTTTCTTCA 59.183 33.333 0.00 0.00 0.00 3.02
465 466 7.816995 TGGTATGGTTGCATTTGTATTTTCTTC 59.183 33.333 0.00 0.00 0.00 2.87
466 467 7.675062 TGGTATGGTTGCATTTGTATTTTCTT 58.325 30.769 0.00 0.00 0.00 2.52
467 468 7.238486 TGGTATGGTTGCATTTGTATTTTCT 57.762 32.000 0.00 0.00 0.00 2.52
468 469 8.491331 AATGGTATGGTTGCATTTGTATTTTC 57.509 30.769 0.00 0.00 0.00 2.29
469 470 8.099537 TGAATGGTATGGTTGCATTTGTATTTT 58.900 29.630 0.00 0.00 0.00 1.82
470 471 7.619050 TGAATGGTATGGTTGCATTTGTATTT 58.381 30.769 0.00 0.00 0.00 1.40
471 472 7.093377 ACTGAATGGTATGGTTGCATTTGTATT 60.093 33.333 0.00 0.00 0.00 1.89
472 473 6.380846 ACTGAATGGTATGGTTGCATTTGTAT 59.619 34.615 0.00 0.00 0.00 2.29
473 474 5.714333 ACTGAATGGTATGGTTGCATTTGTA 59.286 36.000 0.00 0.00 0.00 2.41
474 475 4.527816 ACTGAATGGTATGGTTGCATTTGT 59.472 37.500 0.00 0.00 0.00 2.83
475 476 5.075858 ACTGAATGGTATGGTTGCATTTG 57.924 39.130 0.00 0.00 0.00 2.32
476 477 6.849085 TTACTGAATGGTATGGTTGCATTT 57.151 33.333 0.00 0.00 0.00 2.32
477 478 6.210385 TGTTTACTGAATGGTATGGTTGCATT 59.790 34.615 0.00 0.00 0.00 3.56
478 479 5.714333 TGTTTACTGAATGGTATGGTTGCAT 59.286 36.000 0.00 0.00 0.00 3.96
479 480 5.073428 TGTTTACTGAATGGTATGGTTGCA 58.927 37.500 0.00 0.00 0.00 4.08
480 481 5.183140 ACTGTTTACTGAATGGTATGGTTGC 59.817 40.000 0.00 0.00 0.00 4.17
481 482 6.206634 ACACTGTTTACTGAATGGTATGGTTG 59.793 38.462 0.00 0.00 0.00 3.77
482 483 6.303839 ACACTGTTTACTGAATGGTATGGTT 58.696 36.000 0.00 0.00 0.00 3.67
483 484 5.876357 ACACTGTTTACTGAATGGTATGGT 58.124 37.500 0.00 0.00 0.00 3.55
484 485 6.817765 AACACTGTTTACTGAATGGTATGG 57.182 37.500 0.00 0.00 0.00 2.74
514 515 9.554724 GACAAAAATGACAAAATCGAAGCTATA 57.445 29.630 0.00 0.00 0.00 1.31
515 516 7.542130 GGACAAAAATGACAAAATCGAAGCTAT 59.458 33.333 0.00 0.00 0.00 2.97
516 517 6.861055 GGACAAAAATGACAAAATCGAAGCTA 59.139 34.615 0.00 0.00 0.00 3.32
517 518 5.691754 GGACAAAAATGACAAAATCGAAGCT 59.308 36.000 0.00 0.00 0.00 3.74
518 519 5.461737 TGGACAAAAATGACAAAATCGAAGC 59.538 36.000 0.00 0.00 0.00 3.86
519 520 6.917477 TCTGGACAAAAATGACAAAATCGAAG 59.083 34.615 0.00 0.00 0.00 3.79
520 521 6.800543 TCTGGACAAAAATGACAAAATCGAA 58.199 32.000 0.00 0.00 0.00 3.71
521 522 6.384258 TCTGGACAAAAATGACAAAATCGA 57.616 33.333 0.00 0.00 0.00 3.59
522 523 7.642071 AATCTGGACAAAAATGACAAAATCG 57.358 32.000 0.00 0.00 0.00 3.34
526 527 9.859427 GATGATAATCTGGACAAAAATGACAAA 57.141 29.630 0.00 0.00 0.00 2.83
527 528 9.022884 TGATGATAATCTGGACAAAAATGACAA 57.977 29.630 0.00 0.00 0.00 3.18
528 529 8.578448 TGATGATAATCTGGACAAAAATGACA 57.422 30.769 0.00 0.00 0.00 3.58
531 532 9.811995 ACATTGATGATAATCTGGACAAAAATG 57.188 29.630 0.00 0.00 0.00 2.32
532 533 9.811995 CACATTGATGATAATCTGGACAAAAAT 57.188 29.630 0.00 0.00 0.00 1.82
533 534 9.022884 TCACATTGATGATAATCTGGACAAAAA 57.977 29.630 0.00 0.00 0.00 1.94
534 535 8.578448 TCACATTGATGATAATCTGGACAAAA 57.422 30.769 0.00 0.00 0.00 2.44
535 536 8.756486 ATCACATTGATGATAATCTGGACAAA 57.244 30.769 0.00 0.00 37.56 2.83
536 537 8.756486 AATCACATTGATGATAATCTGGACAA 57.244 30.769 0.00 0.00 38.40 3.18
537 538 8.756486 AAATCACATTGATGATAATCTGGACA 57.244 30.769 0.00 0.00 38.40 4.02
540 541 9.569167 GCATAAATCACATTGATGATAATCTGG 57.431 33.333 0.00 0.00 38.40 3.86
541 542 9.569167 GGCATAAATCACATTGATGATAATCTG 57.431 33.333 0.00 0.00 38.40 2.90
542 543 9.304335 TGGCATAAATCACATTGATGATAATCT 57.696 29.630 0.00 0.00 38.40 2.40
543 544 9.569167 CTGGCATAAATCACATTGATGATAATC 57.431 33.333 0.00 0.00 38.40 1.75
544 545 9.085645 ACTGGCATAAATCACATTGATGATAAT 57.914 29.630 0.00 0.00 38.40 1.28
545 546 8.467963 ACTGGCATAAATCACATTGATGATAA 57.532 30.769 0.00 0.00 38.40 1.75
546 547 8.354426 CAACTGGCATAAATCACATTGATGATA 58.646 33.333 0.00 0.00 38.40 2.15
547 548 6.971726 ACTGGCATAAATCACATTGATGAT 57.028 33.333 0.00 0.00 41.20 2.45
548 549 6.377712 TCAACTGGCATAAATCACATTGATGA 59.622 34.615 0.00 0.00 37.15 2.92
549 550 6.474427 GTCAACTGGCATAAATCACATTGATG 59.526 38.462 0.00 0.00 37.15 3.07
550 551 6.379133 AGTCAACTGGCATAAATCACATTGAT 59.621 34.615 0.00 0.00 39.09 2.57
551 552 5.711506 AGTCAACTGGCATAAATCACATTGA 59.288 36.000 0.00 0.00 0.00 2.57
552 553 5.957798 AGTCAACTGGCATAAATCACATTG 58.042 37.500 0.00 0.00 0.00 2.82
553 554 7.340232 ACATAGTCAACTGGCATAAATCACATT 59.660 33.333 0.00 0.00 0.00 2.71
554 555 6.830324 ACATAGTCAACTGGCATAAATCACAT 59.170 34.615 0.00 0.00 0.00 3.21
555 556 6.179756 ACATAGTCAACTGGCATAAATCACA 58.820 36.000 0.00 0.00 0.00 3.58
556 557 6.683974 ACATAGTCAACTGGCATAAATCAC 57.316 37.500 0.00 0.00 0.00 3.06
622 623 9.353999 GCACACCCTTTATAAAGAGTAAATTTG 57.646 33.333 23.95 11.52 38.28 2.32
623 624 8.241367 CGCACACCCTTTATAAAGAGTAAATTT 58.759 33.333 23.95 0.00 38.28 1.82
624 625 7.627726 GCGCACACCCTTTATAAAGAGTAAATT 60.628 37.037 23.95 2.56 38.28 1.82
625 626 6.183360 GCGCACACCCTTTATAAAGAGTAAAT 60.183 38.462 23.95 5.87 38.28 1.40
626 627 5.122711 GCGCACACCCTTTATAAAGAGTAAA 59.877 40.000 23.95 0.00 38.28 2.01
627 628 4.632688 GCGCACACCCTTTATAAAGAGTAA 59.367 41.667 23.95 0.00 38.28 2.24
628 629 4.186159 GCGCACACCCTTTATAAAGAGTA 58.814 43.478 23.95 0.00 38.28 2.59
629 630 3.007635 GCGCACACCCTTTATAAAGAGT 58.992 45.455 23.95 15.70 38.28 3.24
630 631 2.030457 CGCGCACACCCTTTATAAAGAG 59.970 50.000 23.95 15.05 38.28 2.85
631 632 2.004017 CGCGCACACCCTTTATAAAGA 58.996 47.619 23.95 0.00 38.28 2.52
632 633 1.531058 GCGCGCACACCCTTTATAAAG 60.531 52.381 29.10 16.90 35.79 1.85
633 634 0.448593 GCGCGCACACCCTTTATAAA 59.551 50.000 29.10 0.00 0.00 1.40
634 635 0.673956 TGCGCGCACACCCTTTATAA 60.674 50.000 33.09 1.22 0.00 0.98
635 636 1.079057 TGCGCGCACACCCTTTATA 60.079 52.632 33.09 1.47 0.00 0.98
636 637 2.359354 TGCGCGCACACCCTTTAT 60.359 55.556 33.09 0.00 0.00 1.40
645 646 2.314647 TGAACTTAGGTGCGCGCAC 61.315 57.895 46.90 46.90 45.49 5.34
646 647 2.029815 TGAACTTAGGTGCGCGCA 59.970 55.556 33.09 33.09 0.00 6.09
647 648 2.474712 GTGAACTTAGGTGCGCGC 59.525 61.111 27.26 27.26 0.00 6.86
648 649 1.225376 TTGGTGAACTTAGGTGCGCG 61.225 55.000 0.00 0.00 32.46 6.86
649 650 0.948678 TTTGGTGAACTTAGGTGCGC 59.051 50.000 0.00 0.00 0.00 6.09
650 651 3.074412 AGATTTGGTGAACTTAGGTGCG 58.926 45.455 0.00 0.00 0.00 5.34
651 652 3.366374 GCAGATTTGGTGAACTTAGGTGC 60.366 47.826 0.00 0.00 0.00 5.01
652 653 3.120199 CGCAGATTTGGTGAACTTAGGTG 60.120 47.826 0.00 0.00 0.00 4.00
653 654 3.074412 CGCAGATTTGGTGAACTTAGGT 58.926 45.455 0.00 0.00 0.00 3.08
654 655 3.074412 ACGCAGATTTGGTGAACTTAGG 58.926 45.455 0.00 0.00 0.00 2.69
655 656 3.125316 GGACGCAGATTTGGTGAACTTAG 59.875 47.826 0.00 0.00 0.00 2.18
656 657 3.071479 GGACGCAGATTTGGTGAACTTA 58.929 45.455 0.00 0.00 0.00 2.24
657 658 1.880027 GGACGCAGATTTGGTGAACTT 59.120 47.619 0.00 0.00 0.00 2.66
658 659 1.523758 GGACGCAGATTTGGTGAACT 58.476 50.000 0.00 0.00 0.00 3.01
659 660 0.521735 GGGACGCAGATTTGGTGAAC 59.478 55.000 0.00 0.00 0.00 3.18
660 661 0.400213 AGGGACGCAGATTTGGTGAA 59.600 50.000 0.00 0.00 0.00 3.18
661 662 0.036388 GAGGGACGCAGATTTGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
662 663 0.036010 AGAGGGACGCAGATTTGGTG 60.036 55.000 0.00 0.00 0.00 4.17
663 664 0.036010 CAGAGGGACGCAGATTTGGT 60.036 55.000 0.00 0.00 0.00 3.67
664 665 0.036010 ACAGAGGGACGCAGATTTGG 60.036 55.000 0.00 0.00 0.00 3.28
665 666 1.081892 CACAGAGGGACGCAGATTTG 58.918 55.000 0.00 0.00 0.00 2.32
666 667 0.687354 ACACAGAGGGACGCAGATTT 59.313 50.000 0.00 0.00 0.00 2.17
667 668 0.036952 CACACAGAGGGACGCAGATT 60.037 55.000 0.00 0.00 0.00 2.40
668 669 1.188219 ACACACAGAGGGACGCAGAT 61.188 55.000 0.00 0.00 0.00 2.90
669 670 1.832608 ACACACAGAGGGACGCAGA 60.833 57.895 0.00 0.00 0.00 4.26
670 671 1.665916 CACACACAGAGGGACGCAG 60.666 63.158 0.00 0.00 0.00 5.18
671 672 2.363711 GACACACACAGAGGGACGCA 62.364 60.000 0.00 0.00 0.00 5.24
672 673 1.664965 GACACACACAGAGGGACGC 60.665 63.158 0.00 0.00 0.00 5.19
673 674 0.104120 TTGACACACACAGAGGGACG 59.896 55.000 0.00 0.00 0.00 4.79
674 675 1.412710 TCTTGACACACACAGAGGGAC 59.587 52.381 0.00 0.00 0.00 4.46
675 676 1.412710 GTCTTGACACACACAGAGGGA 59.587 52.381 0.00 0.00 0.00 4.20
676 677 1.138859 TGTCTTGACACACACAGAGGG 59.861 52.381 0.00 0.00 0.00 4.30
677 678 2.602257 TGTCTTGACACACACAGAGG 57.398 50.000 0.00 0.00 0.00 3.69
678 679 3.721035 TGATGTCTTGACACACACAGAG 58.279 45.455 5.53 0.00 0.00 3.35
679 680 3.817709 TGATGTCTTGACACACACAGA 57.182 42.857 5.53 0.00 0.00 3.41
680 681 6.732531 ATAATGATGTCTTGACACACACAG 57.267 37.500 5.53 0.00 0.00 3.66
681 682 7.158021 TGTATAATGATGTCTTGACACACACA 58.842 34.615 5.53 5.24 0.00 3.72
682 683 7.595311 TGTATAATGATGTCTTGACACACAC 57.405 36.000 5.53 0.08 0.00 3.82
683 684 7.148423 GCTTGTATAATGATGTCTTGACACACA 60.148 37.037 5.53 9.63 0.00 3.72
684 685 7.065085 AGCTTGTATAATGATGTCTTGACACAC 59.935 37.037 5.53 4.56 0.00 3.82
685 686 7.064966 CAGCTTGTATAATGATGTCTTGACACA 59.935 37.037 5.53 6.98 0.00 3.72
686 687 7.404985 CAGCTTGTATAATGATGTCTTGACAC 58.595 38.462 5.53 1.76 0.00 3.67
687 688 6.539826 CCAGCTTGTATAATGATGTCTTGACA 59.460 38.462 5.89 5.89 0.00 3.58
688 689 6.540189 ACCAGCTTGTATAATGATGTCTTGAC 59.460 38.462 0.00 0.00 0.00 3.18
689 690 6.653020 ACCAGCTTGTATAATGATGTCTTGA 58.347 36.000 0.00 0.00 0.00 3.02
690 691 6.932356 ACCAGCTTGTATAATGATGTCTTG 57.068 37.500 0.00 0.00 0.00 3.02
691 692 6.886459 ACAACCAGCTTGTATAATGATGTCTT 59.114 34.615 0.00 0.00 41.63 3.01
692 693 6.418101 ACAACCAGCTTGTATAATGATGTCT 58.582 36.000 0.00 0.00 41.63 3.41
693 694 6.683974 ACAACCAGCTTGTATAATGATGTC 57.316 37.500 0.00 0.00 41.63 3.06
741 743 2.579860 AGGAAATCAGCTCCATCCACTT 59.420 45.455 7.02 0.00 35.20 3.16
742 744 2.172293 GAGGAAATCAGCTCCATCCACT 59.828 50.000 7.02 0.00 35.20 4.00
748 750 0.250234 CGTGGAGGAAATCAGCTCCA 59.750 55.000 0.00 0.00 42.95 3.86
750 752 1.424493 CGCGTGGAGGAAATCAGCTC 61.424 60.000 0.00 0.00 0.00 4.09
755 757 0.459585 TGCTACGCGTGGAGGAAATC 60.460 55.000 27.75 7.00 0.00 2.17
765 767 2.125673 GGACATGGTGCTACGCGT 60.126 61.111 19.17 19.17 0.00 6.01
771 777 2.046892 GCGAGTGGACATGGTGCT 60.047 61.111 0.00 0.00 0.00 4.40
830 838 1.528129 GTTCTTGCTCCTGTCTTGGG 58.472 55.000 0.00 0.00 0.00 4.12
847 855 6.576778 AAGGAATGTAATAGCTAGGTGGTT 57.423 37.500 4.27 2.30 0.00 3.67
909 921 0.179059 GGAAGGAGCTAGCTGAAGGC 60.179 60.000 24.99 6.93 42.19 4.35
960 972 0.329261 CTGGCTGGGAAGGTGATTGA 59.671 55.000 0.00 0.00 0.00 2.57
972 984 1.521010 CGCTGTGATCTCTGGCTGG 60.521 63.158 0.00 0.00 0.00 4.85
1368 1380 2.000429 AACGTGCGAGGGTGTATAAC 58.000 50.000 0.00 0.00 0.00 1.89
1430 1449 1.478510 TCAGAGAGCCAATCGAAGTCC 59.521 52.381 0.00 0.00 0.00 3.85
1431 1450 2.949451 TCAGAGAGCCAATCGAAGTC 57.051 50.000 0.00 0.00 0.00 3.01
1432 1451 2.741228 GCATCAGAGAGCCAATCGAAGT 60.741 50.000 0.00 0.00 0.00 3.01
1433 1452 1.865970 GCATCAGAGAGCCAATCGAAG 59.134 52.381 0.00 0.00 0.00 3.79
1434 1453 1.483827 AGCATCAGAGAGCCAATCGAA 59.516 47.619 0.00 0.00 0.00 3.71
1573 1592 1.081641 GAACGGCTCGAACTCGTGA 60.082 57.895 7.87 0.00 40.80 4.35
1600 1619 2.358737 AGCAGGAAAACGGAGCCG 60.359 61.111 7.48 7.48 46.03 5.52
1623 1642 0.452987 TACAGACACGCGTGGATACC 59.547 55.000 39.21 22.75 34.19 2.73
1637 1656 6.689669 CACACGATACGTAATTCATGTACAGA 59.310 38.462 0.00 0.00 38.32 3.41
1651 1670 2.332362 CTAGGGCGCACACGATACGT 62.332 60.000 14.57 0.00 43.93 3.57
2308 2345 4.742649 ACGGAGCTCTCGGCCTCA 62.743 66.667 22.76 0.00 43.05 3.86
2348 2385 2.342279 CACGGCGAACTCCAGGAA 59.658 61.111 16.62 0.00 0.00 3.36
2349 2386 3.691342 CCACGGCGAACTCCAGGA 61.691 66.667 16.62 0.00 0.00 3.86
2371 2408 1.739929 CTGCACGGCGGTGTTCATA 60.740 57.895 23.39 6.74 46.13 2.15
2647 2687 2.549992 CCTGCATCCGGATCCGATTAAA 60.550 50.000 35.42 16.05 42.83 1.52
3071 3117 5.009110 TGGATTTTCAAGTGCATACAACGAA 59.991 36.000 0.00 0.00 0.00 3.85
3206 3254 8.795513 CCAACTGTCATATTGCCATGATATTTA 58.204 33.333 0.00 0.00 37.28 1.40
3228 3277 3.635268 CTGCCCTGAGCTCCCCAAC 62.635 68.421 12.15 0.00 44.23 3.77
3431 3967 0.383949 GACGGTGTTTTGGTGCACAT 59.616 50.000 20.43 0.00 37.35 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.