Multiple sequence alignment - TraesCS2D01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G399600 chr2D 100.000 4761 0 0 1 4761 512772720 512767960 0.000000e+00 8793.0
1 TraesCS2D01G399600 chr2D 100.000 2415 0 0 5110 7524 512767611 512765197 0.000000e+00 4460.0
2 TraesCS2D01G399600 chr2D 86.971 614 56 12 2519 3125 614384963 614384367 0.000000e+00 669.0
3 TraesCS2D01G399600 chr2D 90.323 372 22 3 1712 2079 650786838 650786477 6.830000e-130 475.0
4 TraesCS2D01G399600 chr2D 92.177 294 8 4 913 1204 650787177 650786897 1.180000e-107 401.0
5 TraesCS2D01G399600 chr2D 90.102 293 15 4 913 1204 291609103 291608824 1.190000e-97 368.0
6 TraesCS2D01G399600 chr2D 100.000 191 0 0 5110 5300 512765912 512765722 3.340000e-93 353.0
7 TraesCS2D01G399600 chr2D 95.882 170 7 0 4418 4587 268894294 268894463 7.440000e-70 276.0
8 TraesCS2D01G399600 chr2D 100.000 29 0 0 139 167 22450822 22450794 4.000000e-03 54.7
9 TraesCS2D01G399600 chr2B 95.813 2221 76 10 2519 4731 602997314 602995103 0.000000e+00 3570.0
10 TraesCS2D01G399600 chr2B 91.621 2375 106 34 1 2335 602999620 602997299 0.000000e+00 3197.0
11 TraesCS2D01G399600 chr2B 95.067 1500 62 8 5548 7037 602994929 602993432 0.000000e+00 2350.0
12 TraesCS2D01G399600 chr2B 95.763 472 20 0 6486 6957 539375468 539375939 0.000000e+00 761.0
13 TraesCS2D01G399600 chr2B 87.112 419 28 14 7080 7490 602993431 602993031 1.150000e-122 451.0
14 TraesCS2D01G399600 chr2B 93.421 228 15 0 5344 5571 602995104 602994877 9.350000e-89 339.0
15 TraesCS2D01G399600 chr2B 90.909 242 19 2 1874 2114 795859393 795859632 9.420000e-84 322.0
16 TraesCS2D01G399600 chr2B 92.823 209 10 4 2322 2527 44928115 44928321 1.590000e-76 298.0
17 TraesCS2D01G399600 chr2B 92.208 154 12 0 3377 3530 153858223 153858376 1.270000e-52 219.0
18 TraesCS2D01G399600 chr2B 100.000 72 0 0 6384 6455 539375400 539375471 4.740000e-27 134.0
19 TraesCS2D01G399600 chr2A 91.499 1341 73 15 6187 7524 656370916 656369614 0.000000e+00 1807.0
20 TraesCS2D01G399600 chr2A 91.674 1141 50 20 1 1127 656376755 656375646 0.000000e+00 1539.0
21 TraesCS2D01G399600 chr2A 86.102 885 65 26 2519 3377 656373951 656373099 0.000000e+00 900.0
22 TraesCS2D01G399600 chr2A 90.323 589 37 10 1659 2244 656375145 656374574 0.000000e+00 754.0
23 TraesCS2D01G399600 chr2A 87.826 345 25 8 1233 1569 656375470 656375135 9.160000e-104 388.0
24 TraesCS2D01G399600 chr2A 84.058 345 29 16 3531 3860 656373074 656372741 7.330000e-80 309.0
25 TraesCS2D01G399600 chr2A 97.076 171 4 1 4418 4587 317953337 317953167 3.440000e-73 287.0
26 TraesCS2D01G399600 chr2A 93.182 176 12 0 4419 4594 277139427 277139602 7.490000e-65 259.0
27 TraesCS2D01G399600 chr2A 83.099 142 21 2 4621 4761 656371842 656371703 7.930000e-25 126.0
28 TraesCS2D01G399600 chr2A 96.104 77 3 0 2259 2335 656374012 656373936 7.930000e-25 126.0
29 TraesCS2D01G399600 chr2A 92.500 40 2 1 2273 2312 656374087 656374049 1.000000e-03 56.5
30 TraesCS2D01G399600 chr5D 95.548 584 20 4 5790 6367 24886093 24885510 0.000000e+00 929.0
31 TraesCS2D01G399600 chr5D 94.631 596 20 1 6362 6957 24884210 24883627 0.000000e+00 913.0
32 TraesCS2D01G399600 chr5D 97.059 170 5 0 4418 4587 299073582 299073413 3.440000e-73 287.0
33 TraesCS2D01G399600 chr5D 93.506 154 10 0 3377 3530 256749799 256749952 5.870000e-56 230.0
34 TraesCS2D01G399600 chr5D 96.850 127 4 0 5547 5673 24886213 24886087 5.910000e-51 213.0
35 TraesCS2D01G399600 chr5D 95.556 90 4 0 1567 1656 396897201 396897290 2.190000e-30 145.0
36 TraesCS2D01G399600 chr5D 94.382 89 4 1 1572 1660 553956507 553956594 1.320000e-27 135.0
37 TraesCS2D01G399600 chr5D 92.473 93 7 0 1566 1658 325425252 325425160 4.740000e-27 134.0
38 TraesCS2D01G399600 chr5B 95.470 574 26 0 6384 6957 588654073 588654646 0.000000e+00 917.0
39 TraesCS2D01G399600 chr5B 93.548 155 9 1 3377 3530 288327809 288327655 5.870000e-56 230.0
40 TraesCS2D01G399600 chr5B 96.629 89 3 0 1570 1658 282083170 282083082 1.690000e-31 148.0
41 TraesCS2D01G399600 chr5B 95.604 91 4 0 1567 1657 332964977 332965067 6.080000e-31 147.0
42 TraesCS2D01G399600 chr5A 96.189 551 21 0 6384 6934 37985524 37984974 0.000000e+00 902.0
43 TraesCS2D01G399600 chr5A 93.839 211 7 6 2328 2534 596662353 596662145 5.670000e-81 313.0
44 TraesCS2D01G399600 chr5A 91.195 159 14 0 3377 3535 335291589 335291431 4.570000e-52 217.0
45 TraesCS2D01G399600 chr5A 92.157 153 12 0 3377 3529 337822837 337822989 4.570000e-52 217.0
46 TraesCS2D01G399600 chr5A 94.505 91 5 0 1567 1657 338269804 338269894 2.830000e-29 141.0
47 TraesCS2D01G399600 chr5A 88.710 62 3 1 916 977 685306038 685306095 1.050000e-08 73.1
48 TraesCS2D01G399600 chr5A 97.143 35 1 0 141 175 611553970 611554004 8.150000e-05 60.2
49 TraesCS2D01G399600 chr5A 100.000 29 0 0 143 171 505208970 505208942 4.000000e-03 54.7
50 TraesCS2D01G399600 chr6B 95.463 551 25 0 6384 6934 581855492 581854942 0.000000e+00 880.0
51 TraesCS2D01G399600 chr6B 93.902 574 35 0 6384 6957 279575713 279576286 0.000000e+00 867.0
52 TraesCS2D01G399600 chr6B 92.093 215 13 4 2321 2534 656278178 656277967 4.410000e-77 300.0
53 TraesCS2D01G399600 chr6B 92.208 154 11 1 3377 3530 233039225 233039377 4.570000e-52 217.0
54 TraesCS2D01G399600 chr6B 95.604 91 4 0 1567 1657 173799632 173799722 6.080000e-31 147.0
55 TraesCS2D01G399600 chr1B 93.380 574 24 1 6384 6957 60967619 60967060 0.000000e+00 837.0
56 TraesCS2D01G399600 chr1B 87.134 614 55 12 2519 3125 659103900 659103304 0.000000e+00 675.0
57 TraesCS2D01G399600 chr1B 91.255 263 13 2 943 1204 659104692 659104439 4.320000e-92 350.0
58 TraesCS2D01G399600 chr1B 90.496 242 20 2 1874 2114 39266407 39266646 4.380000e-82 316.0
59 TraesCS2D01G399600 chr1B 95.506 89 4 0 1570 1658 502946020 502945932 7.870000e-30 143.0
60 TraesCS2D01G399600 chr6D 87.296 614 54 12 2519 3125 322698367 322698963 0.000000e+00 680.0
61 TraesCS2D01G399600 chr6D 86.971 614 56 12 2519 3125 384195873 384195277 0.000000e+00 669.0
62 TraesCS2D01G399600 chr6D 94.178 292 4 2 913 1204 67658532 67658810 4.170000e-117 433.0
63 TraesCS2D01G399600 chr6D 89.796 245 21 3 1874 2117 384195043 384194802 2.040000e-80 311.0
64 TraesCS2D01G399600 chr6D 92.553 94 6 1 1567 1659 136938025 136938118 4.740000e-27 134.0
65 TraesCS2D01G399600 chr6D 93.182 88 6 0 1570 1657 84236231 84236144 6.130000e-26 130.0
66 TraesCS2D01G399600 chr6D 92.308 91 7 0 1566 1656 292084053 292084143 6.130000e-26 130.0
67 TraesCS2D01G399600 chr6D 94.828 58 2 1 1148 1204 322698090 322698147 1.040000e-13 89.8
68 TraesCS2D01G399600 chr6D 92.063 63 3 2 1148 1208 384196145 384196083 3.740000e-13 87.9
69 TraesCS2D01G399600 chr6D 100.000 30 0 0 144 173 28645356 28645327 1.000000e-03 56.5
70 TraesCS2D01G399600 chr6D 100.000 28 0 0 141 168 22071880 22071907 1.400000e-02 52.8
71 TraesCS2D01G399600 chr6D 100.000 28 0 0 141 168 443754841 443754868 1.400000e-02 52.8
72 TraesCS2D01G399600 chr3D 87.113 613 54 13 2519 3125 596629100 596629693 0.000000e+00 671.0
73 TraesCS2D01G399600 chr3D 91.611 298 9 4 908 1204 21769916 21769634 1.520000e-106 398.0
74 TraesCS2D01G399600 chr3D 81.875 320 31 14 3539 3847 21768367 21768064 2.100000e-60 244.0
75 TraesCS2D01G399600 chr3D 96.667 90 1 2 1570 1659 196945482 196945395 1.690000e-31 148.0
76 TraesCS2D01G399600 chr3D 94.444 90 5 0 1570 1659 170543260 170543171 1.020000e-28 139.0
77 TraesCS2D01G399600 chr3D 93.478 92 6 0 1567 1658 239591137 239591228 3.660000e-28 137.0
78 TraesCS2D01G399600 chrUn 86.971 614 56 12 2519 3125 162682796 162683392 0.000000e+00 669.0
79 TraesCS2D01G399600 chrUn 93.333 90 3 3 1570 1658 47528280 47528193 6.130000e-26 130.0
80 TraesCS2D01G399600 chrUn 91.489 94 7 1 1570 1662 271359679 271359586 2.200000e-25 128.0
81 TraesCS2D01G399600 chrUn 91.304 92 8 0 1567 1658 36352481 36352390 7.930000e-25 126.0
82 TraesCS2D01G399600 chrUn 91.304 92 8 0 1567 1658 214882524 214882615 7.930000e-25 126.0
83 TraesCS2D01G399600 chrUn 92.135 89 7 0 1570 1658 277594293 277594205 7.930000e-25 126.0
84 TraesCS2D01G399600 chrUn 91.304 92 7 1 1570 1661 101611048 101610958 2.850000e-24 124.0
85 TraesCS2D01G399600 chrUn 89.691 97 9 1 1567 1662 221368025 221368121 1.030000e-23 122.0
86 TraesCS2D01G399600 chrUn 91.111 90 8 0 1567 1656 240888496 240888585 1.030000e-23 122.0
87 TraesCS2D01G399600 chrUn 90.426 94 7 2 1570 1661 268935401 268935308 1.030000e-23 122.0
88 TraesCS2D01G399600 chrUn 100.000 29 0 0 141 169 20846142 20846114 4.000000e-03 54.7
89 TraesCS2D01G399600 chrUn 100.000 28 0 0 141 168 134235012 134234985 1.400000e-02 52.8
90 TraesCS2D01G399600 chr7D 86.829 615 56 13 2519 3125 548186106 548185509 0.000000e+00 664.0
91 TraesCS2D01G399600 chr7D 89.420 293 15 5 913 1204 544155531 544155254 9.290000e-94 355.0
92 TraesCS2D01G399600 chr7D 88.737 293 18 6 916 1207 142214379 142214101 2.010000e-90 344.0
93 TraesCS2D01G399600 chr7D 90.909 242 19 2 1874 2114 37622666 37622905 9.420000e-84 322.0
94 TraesCS2D01G399600 chr7D 98.425 127 1 1 1079 1204 548186436 548186310 9.830000e-54 222.0
95 TraesCS2D01G399600 chr7D 91.667 156 12 1 3375 3530 588081775 588081929 1.640000e-51 215.0
96 TraesCS2D01G399600 chr7D 100.000 29 0 0 141 169 566026601 566026573 4.000000e-03 54.7
97 TraesCS2D01G399600 chr7D 96.875 32 0 1 141 171 192922010 192922041 1.400000e-02 52.8
98 TraesCS2D01G399600 chr7D 96.875 32 0 1 141 171 623264312 623264343 1.400000e-02 52.8
99 TraesCS2D01G399600 chr3B 90.591 372 30 2 1712 2079 88151503 88151133 8.770000e-134 488.0
100 TraesCS2D01G399600 chr3B 93.301 209 10 4 2315 2521 701414599 701414805 9.480000e-79 305.0
101 TraesCS2D01G399600 chr3B 94.643 168 6 2 4419 4586 578772874 578773038 2.690000e-64 257.0
102 TraesCS2D01G399600 chr1D 90.515 369 32 2 1712 2079 408916843 408916477 1.140000e-132 484.0
103 TraesCS2D01G399600 chr1D 92.857 294 6 4 913 1204 408917182 408916902 5.430000e-111 412.0
104 TraesCS2D01G399600 chr1D 95.833 96 4 0 1567 1662 124917472 124917567 1.010000e-33 156.0
105 TraesCS2D01G399600 chr1D 95.604 91 4 0 1567 1657 470828857 470828947 6.080000e-31 147.0
106 TraesCS2D01G399600 chr1D 92.473 93 6 1 1567 1659 40241904 40241995 1.700000e-26 132.0
107 TraesCS2D01G399600 chr1D 92.391 92 7 0 1567 1658 470641824 470641915 1.700000e-26 132.0
108 TraesCS2D01G399600 chr1D 92.308 91 7 0 1567 1657 160532559 160532649 6.130000e-26 130.0
109 TraesCS2D01G399600 chr1D 94.828 58 2 1 1148 1204 353181177 353181234 1.040000e-13 89.8
110 TraesCS2D01G399600 chr1D 100.000 30 0 0 141 170 457538945 457538974 1.000000e-03 56.5
111 TraesCS2D01G399600 chr7A 90.785 293 13 4 913 1204 675749851 675749572 5.510000e-101 379.0
112 TraesCS2D01G399600 chr7A 94.258 209 6 6 2327 2534 554383322 554383119 1.580000e-81 315.0
113 TraesCS2D01G399600 chr7A 94.675 169 7 1 4419 4587 503442319 503442485 2.080000e-65 261.0
114 TraesCS2D01G399600 chr7A 91.667 156 12 1 3375 3530 679957016 679957170 1.640000e-51 215.0
115 TraesCS2D01G399600 chr7A 95.604 91 4 0 1567 1657 464568462 464568552 6.080000e-31 147.0
116 TraesCS2D01G399600 chr4A 90.785 293 13 4 913 1204 504676917 504676638 5.510000e-101 379.0
117 TraesCS2D01G399600 chr4A 95.025 201 5 5 2330 2528 20234535 20234732 2.040000e-80 311.0
118 TraesCS2D01G399600 chr4A 95.789 190 6 2 2330 2519 420020372 420020559 9.480000e-79 305.0
119 TraesCS2D01G399600 chr4A 97.701 87 2 0 1570 1656 648889524 648889438 4.700000e-32 150.0
120 TraesCS2D01G399600 chr4D 88.396 293 7 5 913 1204 410094489 410094755 2.020000e-85 327.0
121 TraesCS2D01G399600 chr4D 95.506 89 4 0 1570 1658 123100634 123100546 7.870000e-30 143.0
122 TraesCS2D01G399600 chr4D 94.382 89 4 1 1570 1658 492789460 492789373 1.320000e-27 135.0
123 TraesCS2D01G399600 chr4D 100.000 31 0 0 141 171 400203593 400203563 2.930000e-04 58.4
124 TraesCS2D01G399600 chr4D 100.000 28 0 0 142 169 241795297 241795270 1.400000e-02 52.8
125 TraesCS2D01G399600 chr4D 96.774 31 1 0 139 169 422555093 422555123 1.400000e-02 52.8
126 TraesCS2D01G399600 chr6A 91.102 236 19 1 1874 2109 138421774 138422007 1.220000e-82 318.0
127 TraesCS2D01G399600 chr6A 98.305 59 1 0 1012 1070 450320625 450320683 3.710000e-18 104.0
128 TraesCS2D01G399600 chr6A 100.000 29 0 0 141 169 604563795 604563767 4.000000e-03 54.7
129 TraesCS2D01G399600 chr7B 90.083 242 21 2 1874 2114 685616855 685617094 2.040000e-80 311.0
130 TraesCS2D01G399600 chr7B 96.216 185 6 1 2335 2519 198551068 198551251 1.230000e-77 302.0
131 TraesCS2D01G399600 chr7B 96.667 90 3 0 1567 1656 231724282 231724371 4.700000e-32 150.0
132 TraesCS2D01G399600 chr7B 97.701 87 2 0 1570 1656 517318301 517318215 4.700000e-32 150.0
133 TraesCS2D01G399600 chr4B 91.855 221 10 8 2316 2533 63757104 63757319 1.230000e-77 302.0
134 TraesCS2D01G399600 chr4B 94.083 169 10 0 4416 4584 206802588 206802756 2.690000e-64 257.0
135 TraesCS2D01G399600 chr4B 93.529 170 11 0 4418 4587 386210404 386210235 3.480000e-63 254.0
136 TraesCS2D01G399600 chr4B 95.556 90 3 1 1569 1658 79415924 79415836 7.870000e-30 143.0
137 TraesCS2D01G399600 chr4B 94.565 92 5 0 1567 1658 286745961 286746052 7.870000e-30 143.0
138 TraesCS2D01G399600 chr4B 81.699 153 4 8 918 1070 165699632 165699760 1.030000e-18 106.0
139 TraesCS2D01G399600 chr1A 96.471 85 2 1 1572 1656 171465745 171465828 1.020000e-28 139.0
140 TraesCS2D01G399600 chr1A 96.774 62 2 0 1012 1073 98350090 98350029 3.710000e-18 104.0
141 TraesCS2D01G399600 chr1A 96.774 62 2 0 1012 1073 270720628 270720567 3.710000e-18 104.0
142 TraesCS2D01G399600 chr1A 94.915 59 3 0 1012 1070 177379983 177380041 8.040000e-15 93.5
143 TraesCS2D01G399600 chr1A 90.323 62 2 1 916 977 98350145 98350088 2.250000e-10 78.7
144 TraesCS2D01G399600 chr1A 91.228 57 1 1 916 972 270720683 270720631 2.910000e-09 75.0
145 TraesCS2D01G399600 chr3A 96.000 50 2 0 2286 2335 253880187 253880138 1.740000e-11 82.4
146 TraesCS2D01G399600 chr3A 90.323 62 2 1 916 977 149208942 149208999 2.250000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G399600 chr2D 512765197 512772720 7523 True 4535.333333 8793 100.000000 1 7524 3 chr2D.!!$R4 7523
1 TraesCS2D01G399600 chr2D 614384367 614384963 596 True 669.000000 669 86.971000 2519 3125 1 chr2D.!!$R3 606
2 TraesCS2D01G399600 chr2D 650786477 650787177 700 True 438.000000 475 91.250000 913 2079 2 chr2D.!!$R5 1166
3 TraesCS2D01G399600 chr2B 602993031 602999620 6589 True 1981.400000 3570 92.606800 1 7490 5 chr2B.!!$R1 7489
4 TraesCS2D01G399600 chr2B 539375400 539375939 539 False 447.500000 761 97.881500 6384 6957 2 chr2B.!!$F4 573
5 TraesCS2D01G399600 chr2A 656369614 656376755 7141 True 667.277778 1807 89.242778 1 7524 9 chr2A.!!$R2 7523
6 TraesCS2D01G399600 chr5D 24883627 24886213 2586 True 685.000000 929 95.676333 5547 6957 3 chr5D.!!$R3 1410
7 TraesCS2D01G399600 chr5B 588654073 588654646 573 False 917.000000 917 95.470000 6384 6957 1 chr5B.!!$F2 573
8 TraesCS2D01G399600 chr5A 37984974 37985524 550 True 902.000000 902 96.189000 6384 6934 1 chr5A.!!$R1 550
9 TraesCS2D01G399600 chr6B 581854942 581855492 550 True 880.000000 880 95.463000 6384 6934 1 chr6B.!!$R1 550
10 TraesCS2D01G399600 chr6B 279575713 279576286 573 False 867.000000 867 93.902000 6384 6957 1 chr6B.!!$F3 573
11 TraesCS2D01G399600 chr1B 60967060 60967619 559 True 837.000000 837 93.380000 6384 6957 1 chr1B.!!$R1 573
12 TraesCS2D01G399600 chr1B 659103304 659104692 1388 True 512.500000 675 89.194500 943 3125 2 chr1B.!!$R3 2182
13 TraesCS2D01G399600 chr6D 322698090 322698963 873 False 384.900000 680 91.062000 1148 3125 2 chr6D.!!$F6 1977
14 TraesCS2D01G399600 chr6D 384194802 384196145 1343 True 355.966667 669 89.610000 1148 3125 3 chr6D.!!$R3 1977
15 TraesCS2D01G399600 chr3D 596629100 596629693 593 False 671.000000 671 87.113000 2519 3125 1 chr3D.!!$F2 606
16 TraesCS2D01G399600 chr3D 21768064 21769916 1852 True 321.000000 398 86.743000 908 3847 2 chr3D.!!$R3 2939
17 TraesCS2D01G399600 chrUn 162682796 162683392 596 False 669.000000 669 86.971000 2519 3125 1 chrUn.!!$F1 606
18 TraesCS2D01G399600 chr7D 548185509 548186436 927 True 443.000000 664 92.627000 1079 3125 2 chr7D.!!$R4 2046
19 TraesCS2D01G399600 chr1D 408916477 408917182 705 True 448.000000 484 91.686000 913 2079 2 chr1D.!!$R1 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 895 0.191064 CCAGGCCCCTCCTACATAGA 59.809 60.0 0.00 0.00 45.52 1.98 F
2418 3611 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.0 0.00 0.00 35.18 4.85 F
2981 4198 0.033781 TTTGGCAAGGAACAGCATGC 59.966 50.0 10.51 10.51 42.53 4.06 F
4490 5961 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.0 0.00 0.00 39.00 2.78 F
5198 6669 0.036388 CACAGGCCATTAGGTCGTGT 60.036 55.0 5.01 0.00 46.92 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 3648 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 R
3977 5335 0.527385 AACATGCGGCACACACAAAC 60.527 50.000 4.03 0.0 0.00 2.93 R
4532 6003 1.460689 AGGGTCCGACCACTTTGGA 60.461 57.895 19.43 0.0 40.96 3.53 R
5537 7008 0.032912 AACAACCAACCCCGAACCTT 60.033 50.000 0.00 0.0 0.00 3.50 R
6915 9816 0.825010 AACACTACCGACCAGGACGT 60.825 55.000 10.51 0.0 45.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.343239 AGACCACTACCCGTACCATAAATC 59.657 45.833 0.00 0.00 0.00 2.17
68 69 1.537202 GATGAACAACAGTCCACCTGC 59.463 52.381 0.00 0.00 45.68 4.85
116 118 2.519771 ATTTTGATGAGGGCAGCTCA 57.480 45.000 0.00 0.00 35.13 4.26
162 166 6.510536 ACGTCTTATATTTAGAAACGGAGGG 58.489 40.000 0.00 0.00 0.00 4.30
169 173 9.991906 TTATATTTAGAAACGGAGGGAGTATTG 57.008 33.333 0.00 0.00 0.00 1.90
191 195 2.760634 TAGCAGCTCGATTTGTGGAA 57.239 45.000 0.00 0.00 0.00 3.53
192 196 1.160137 AGCAGCTCGATTTGTGGAAC 58.840 50.000 0.00 0.00 37.35 3.62
263 271 3.653164 TCCAGCCACCATAGACAATCTA 58.347 45.455 0.00 0.00 32.87 1.98
308 317 2.304180 AGATATTCTTCGAGGGGGCATG 59.696 50.000 0.00 0.00 0.00 4.06
315 324 0.832135 TCGAGGGGGCATGATAGGAC 60.832 60.000 0.00 0.00 0.00 3.85
500 517 8.110002 CCAAAAAGAAAACAAATTCAACGAGAG 58.890 33.333 0.00 0.00 0.00 3.20
568 586 2.869101 AGGAGGAAGCAGGAGAAAAC 57.131 50.000 0.00 0.00 0.00 2.43
571 589 3.075134 AGGAGGAAGCAGGAGAAAACATT 59.925 43.478 0.00 0.00 0.00 2.71
572 590 3.829026 GGAGGAAGCAGGAGAAAACATTT 59.171 43.478 0.00 0.00 0.00 2.32
573 591 5.010282 GGAGGAAGCAGGAGAAAACATTTA 58.990 41.667 0.00 0.00 0.00 1.40
574 592 5.654209 GGAGGAAGCAGGAGAAAACATTTAT 59.346 40.000 0.00 0.00 0.00 1.40
575 593 6.828785 GGAGGAAGCAGGAGAAAACATTTATA 59.171 38.462 0.00 0.00 0.00 0.98
576 594 7.503902 GGAGGAAGCAGGAGAAAACATTTATAT 59.496 37.037 0.00 0.00 0.00 0.86
577 595 8.230472 AGGAAGCAGGAGAAAACATTTATATG 57.770 34.615 0.00 0.00 37.79 1.78
578 596 6.920210 GGAAGCAGGAGAAAACATTTATATGC 59.080 38.462 0.00 0.00 35.03 3.14
579 597 7.201857 GGAAGCAGGAGAAAACATTTATATGCT 60.202 37.037 0.00 0.00 41.71 3.79
580 598 8.752005 AAGCAGGAGAAAACATTTATATGCTA 57.248 30.769 8.93 0.00 39.21 3.49
581 599 8.752005 AGCAGGAGAAAACATTTATATGCTAA 57.248 30.769 7.47 0.00 38.43 3.09
582 600 9.359653 AGCAGGAGAAAACATTTATATGCTAAT 57.640 29.630 7.47 0.00 38.43 1.73
812 838 4.208686 CGCGCTGACCTACCCCTC 62.209 72.222 5.56 0.00 0.00 4.30
813 839 3.075005 GCGCTGACCTACCCCTCA 61.075 66.667 0.00 0.00 0.00 3.86
865 895 0.191064 CCAGGCCCCTCCTACATAGA 59.809 60.000 0.00 0.00 45.52 1.98
874 904 2.232452 CCTCCTACATAGAGGCAATCCG 59.768 54.545 0.00 0.00 44.30 4.18
1253 1358 5.514834 GGATTAGGATTTCGATGGGGATTGA 60.515 44.000 0.00 0.00 0.00 2.57
1268 1373 2.086869 GATTGACTGCTTGCTTGGCTA 58.913 47.619 0.00 0.00 0.00 3.93
1272 1377 1.676635 CTGCTTGCTTGGCTAGGCA 60.677 57.895 16.16 16.16 36.62 4.75
1274 1379 0.255604 TGCTTGCTTGGCTAGGCATA 59.744 50.000 20.94 10.06 38.30 3.14
1276 1381 1.602311 CTTGCTTGGCTAGGCATAGG 58.398 55.000 20.94 13.86 38.30 2.57
1375 2006 0.529337 AGATCGTTCGCATCTGCCTG 60.529 55.000 0.00 0.00 37.91 4.85
1378 2009 2.437359 GTTCGCATCTGCCTGCCT 60.437 61.111 0.00 0.00 39.00 4.75
1392 2023 1.048601 CTGCCTATCGCCTTCCCTAA 58.951 55.000 0.00 0.00 36.24 2.69
1408 2039 6.263168 CCTTCCCTAACTACAAATTGCTATGG 59.737 42.308 0.00 0.00 0.00 2.74
1410 2041 4.278419 CCCTAACTACAAATTGCTATGGCC 59.722 45.833 0.00 0.00 37.74 5.36
1433 2064 1.213537 CGCCCAATTCTGCCAACTG 59.786 57.895 0.00 0.00 0.00 3.16
1435 2066 0.968405 GCCCAATTCTGCCAACTGAA 59.032 50.000 0.00 0.00 38.02 3.02
1452 2086 5.995565 ACTGAATGTTGGTGCTACTAGTA 57.004 39.130 1.89 1.89 0.00 1.82
1453 2087 6.546428 ACTGAATGTTGGTGCTACTAGTAT 57.454 37.500 2.33 0.00 0.00 2.12
1454 2088 6.947464 ACTGAATGTTGGTGCTACTAGTATT 58.053 36.000 2.33 0.00 0.00 1.89
1455 2089 6.818644 ACTGAATGTTGGTGCTACTAGTATTG 59.181 38.462 2.33 0.00 0.00 1.90
1456 2090 6.112734 TGAATGTTGGTGCTACTAGTATTGG 58.887 40.000 2.33 0.00 0.00 3.16
1457 2091 3.869065 TGTTGGTGCTACTAGTATTGGC 58.131 45.455 2.33 4.39 0.00 4.52
1458 2092 3.517901 TGTTGGTGCTACTAGTATTGGCT 59.482 43.478 2.33 0.00 0.00 4.75
1459 2093 4.019681 TGTTGGTGCTACTAGTATTGGCTT 60.020 41.667 2.33 0.00 0.00 4.35
1483 2123 2.203070 CCACCCTACTGGATGCGC 60.203 66.667 0.00 0.00 38.00 6.09
1510 2150 4.163078 CCCTACTCAACCACTCATCATTCT 59.837 45.833 0.00 0.00 0.00 2.40
1528 2168 2.100197 TCTCGTACCAGCAAGCACTAT 58.900 47.619 0.00 0.00 0.00 2.12
1684 2326 1.009829 GGTAGCCTGCATTTCAGTCG 58.990 55.000 0.00 0.00 41.25 4.18
1862 2508 4.217754 TCGTGTTGAAATAGCAAACCAC 57.782 40.909 0.00 0.00 0.00 4.16
1864 2510 3.728718 CGTGTTGAAATAGCAAACCACAC 59.271 43.478 0.00 0.00 29.93 3.82
1957 2603 3.226347 CGCTTCCAAAGACTTTTTAGCG 58.774 45.455 22.78 22.78 38.54 4.26
1974 2620 7.464830 TTTTAGCGCAGAGTTCATATAGTTC 57.535 36.000 11.47 0.00 0.00 3.01
1979 2625 5.399892 GCGCAGAGTTCATATAGTTCTACAC 59.600 44.000 0.30 0.00 0.00 2.90
1988 2634 9.760660 GTTCATATAGTTCTACACTGCTTTTTG 57.239 33.333 0.00 0.00 35.97 2.44
1998 2644 5.629079 ACACTGCTTTTTGGCTTAGATAC 57.371 39.130 0.00 0.00 0.00 2.24
2084 2730 5.836821 TGGATAGTACTGACTACTTGCTG 57.163 43.478 5.39 0.00 41.01 4.41
2089 2735 1.078143 CTGACTACTTGCTGGGGCC 60.078 63.158 0.00 0.00 37.74 5.80
2104 2750 2.569404 TGGGGCCAATTAACCACAATTC 59.431 45.455 4.39 0.00 36.07 2.17
2143 2789 3.945285 CGTATTGTCCTTAATGCACCCTT 59.055 43.478 0.00 0.00 0.00 3.95
2201 2847 0.979665 TGGAGCAGGAGGAAAGACTG 59.020 55.000 0.00 0.00 35.40 3.51
2202 2848 0.980423 GGAGCAGGAGGAAAGACTGT 59.020 55.000 0.00 0.00 34.79 3.55
2222 2868 6.773638 ACTGTAAAAGATTCAGAGGTGATGT 58.226 36.000 0.00 0.00 33.93 3.06
2245 2891 7.276658 TGTGTTGTGTTAGAGAATAGGTTCAA 58.723 34.615 0.00 0.00 36.79 2.69
2344 3537 8.962884 AATAGCCAAATAAATAAAAAGGGCAG 57.037 30.769 0.00 0.00 42.49 4.85
2345 3538 5.185454 AGCCAAATAAATAAAAAGGGCAGC 58.815 37.500 0.00 0.00 42.49 5.25
2346 3539 4.335315 GCCAAATAAATAAAAAGGGCAGCC 59.665 41.667 1.26 1.26 39.88 4.85
2347 3540 4.881273 CCAAATAAATAAAAAGGGCAGCCC 59.119 41.667 24.90 24.90 45.90 5.19
2358 3551 3.818787 GCAGCCCGGTGCATGAAG 61.819 66.667 13.70 0.91 43.41 3.02
2359 3552 3.818787 CAGCCCGGTGCATGAAGC 61.819 66.667 15.92 0.00 44.83 3.86
2360 3553 4.039092 AGCCCGGTGCATGAAGCT 62.039 61.111 15.92 4.82 45.94 3.74
2361 3554 3.512516 GCCCGGTGCATGAAGCTC 61.513 66.667 9.72 0.00 45.94 4.09
2385 3578 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2386 3579 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2387 3580 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2388 3581 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2389 3582 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2390 3583 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2391 3584 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2392 3585 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2393 3586 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2394 3587 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2395 3588 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
2396 3589 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2397 3590 2.926242 GGGAAGGGTCCGACCACA 60.926 66.667 19.43 0.00 46.04 4.17
2398 3591 2.298661 GGGAAGGGTCCGACCACAT 61.299 63.158 19.43 4.37 46.04 3.21
2399 3592 1.683441 GGAAGGGTCCGACCACATT 59.317 57.895 19.43 10.31 41.02 2.71
2400 3593 0.676782 GGAAGGGTCCGACCACATTG 60.677 60.000 19.43 0.00 41.02 2.82
2401 3594 0.676782 GAAGGGTCCGACCACATTGG 60.677 60.000 19.43 0.00 41.02 3.16
2402 3595 2.045340 GGGTCCGACCACATTGGG 60.045 66.667 19.43 0.00 43.37 4.12
2403 3596 2.754375 GGTCCGACCACATTGGGT 59.246 61.111 13.05 0.00 43.37 4.51
2413 3606 3.869065 ACCACATTGGGTCTATTGTACG 58.131 45.455 0.00 0.00 43.37 3.67
2414 3607 2.612212 CCACATTGGGTCTATTGTACGC 59.388 50.000 0.00 0.00 32.67 4.42
2415 3608 3.266636 CACATTGGGTCTATTGTACGCA 58.733 45.455 0.00 0.00 37.94 5.24
2416 3609 3.309682 CACATTGGGTCTATTGTACGCAG 59.690 47.826 0.00 0.00 40.36 5.18
2417 3610 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2418 3611 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2419 3612 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2420 3613 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2421 3614 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2422 3615 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2423 3616 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2424 3617 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2425 3618 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2426 3619 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2427 3620 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2428 3621 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2429 3622 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2430 3623 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2431 3624 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2432 3625 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2433 3626 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2434 3627 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2435 3628 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2436 3629 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2437 3630 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2438 3631 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2439 3632 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2451 3644 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2452 3645 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2453 3646 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2454 3647 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2455 3648 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2456 3649 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2457 3650 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2458 3651 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2459 3652 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2460 3653 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2461 3654 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2462 3655 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2463 3656 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2464 3657 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2465 3658 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2466 3659 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2467 3660 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2468 3661 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2469 3662 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2470 3663 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2471 3664 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2472 3665 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2473 3666 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2484 3677 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2485 3678 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2486 3679 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2487 3680 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2488 3681 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2489 3682 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2490 3683 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2491 3684 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2492 3685 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2493 3686 0.386838 GTCACAAGGCAGCAGCTTTT 59.613 50.000 0.00 0.00 38.07 2.27
2494 3687 1.608590 GTCACAAGGCAGCAGCTTTTA 59.391 47.619 0.00 0.00 38.07 1.52
2495 3688 1.608590 TCACAAGGCAGCAGCTTTTAC 59.391 47.619 0.00 0.00 38.07 2.01
2496 3689 0.961753 ACAAGGCAGCAGCTTTTACC 59.038 50.000 0.00 0.00 38.07 2.85
2497 3690 0.961019 CAAGGCAGCAGCTTTTACCA 59.039 50.000 0.00 0.00 38.07 3.25
2498 3691 0.961753 AAGGCAGCAGCTTTTACCAC 59.038 50.000 0.00 0.00 36.57 4.16
2499 3692 0.111253 AGGCAGCAGCTTTTACCACT 59.889 50.000 0.00 0.00 41.70 4.00
2500 3693 0.242017 GGCAGCAGCTTTTACCACTG 59.758 55.000 0.00 0.00 41.70 3.66
2502 3695 4.847255 GCAGCTTTTACCACTGCG 57.153 55.556 0.00 0.00 46.38 5.18
2503 3696 1.442688 GCAGCTTTTACCACTGCGC 60.443 57.895 0.00 0.00 46.38 6.09
2504 3697 1.210155 CAGCTTTTACCACTGCGCC 59.790 57.895 4.18 0.00 0.00 6.53
2505 3698 1.228124 AGCTTTTACCACTGCGCCA 60.228 52.632 4.18 0.00 0.00 5.69
2506 3699 0.821711 AGCTTTTACCACTGCGCCAA 60.822 50.000 4.18 0.00 0.00 4.52
2507 3700 0.387239 GCTTTTACCACTGCGCCAAG 60.387 55.000 4.18 0.00 0.00 3.61
2508 3701 0.240945 CTTTTACCACTGCGCCAAGG 59.759 55.000 4.18 6.21 0.00 3.61
2509 3702 1.801309 TTTTACCACTGCGCCAAGGC 61.801 55.000 4.18 0.00 37.85 4.35
2510 3703 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2511 3704 2.690653 TTACCACTGCGCCAAGGCTT 62.691 55.000 4.18 0.00 39.32 4.35
2512 3705 3.741476 CCACTGCGCCAAGGCTTC 61.741 66.667 4.18 1.56 39.32 3.86
2513 3706 3.741476 CACTGCGCCAAGGCTTCC 61.741 66.667 4.18 0.00 39.32 3.46
2515 3708 4.729918 CTGCGCCAAGGCTTCCCT 62.730 66.667 4.18 0.00 45.77 4.20
2535 3728 9.136323 CTTCCCTTCAATAGCCAAATAAATAGT 57.864 33.333 0.00 0.00 0.00 2.12
2561 3754 8.477984 TTGCATTTAATCATTCTTTTGCTACC 57.522 30.769 0.00 0.00 0.00 3.18
2981 4198 0.033781 TTTGGCAAGGAACAGCATGC 59.966 50.000 10.51 10.51 42.53 4.06
2988 4205 1.216064 AGGAACAGCATGCCAGGATA 58.784 50.000 15.66 0.00 42.53 2.59
3072 4289 7.043325 GCAAAGATCACTAGTTAGTAACATCCG 60.043 40.741 15.28 3.19 34.13 4.18
3274 4507 3.689161 TCCCATGTCTTTAAGTGATTGCG 59.311 43.478 0.00 0.00 0.00 4.85
3318 4551 5.177696 GTGGTATTATCTTCGTGGCTTCATC 59.822 44.000 0.00 0.00 0.00 2.92
3439 4672 7.290110 TCAATATGGACTACATACAGACTGG 57.710 40.000 7.51 0.00 44.41 4.00
3448 4681 5.952347 ACTACATACAGACTGGAATGAGTGA 59.048 40.000 20.71 7.37 0.00 3.41
3492 4726 9.574458 CGTCTATATACATCCGATTCAGAAAAT 57.426 33.333 0.00 0.00 0.00 1.82
3542 4776 1.277273 GGGAGTAGTAAACTTGGCGGT 59.723 52.381 0.00 0.00 39.07 5.68
3561 4795 3.810941 CGGTAAACTGGTTAAGCACTTGA 59.189 43.478 2.54 0.00 0.00 3.02
3564 4798 5.298527 GGTAAACTGGTTAAGCACTTGACTT 59.701 40.000 2.54 0.00 30.83 3.01
3699 4941 7.268586 ACATAGTCCACATGATTACTCTGTTC 58.731 38.462 0.00 0.00 28.36 3.18
3799 5050 6.478512 AATCAAAACCCAGTATGTTGTGTT 57.521 33.333 0.00 0.00 33.53 3.32
3855 5107 6.801862 GGCATATACGAAATATGTTTGGCTTC 59.198 38.462 17.64 5.09 35.14 3.86
4116 5477 5.049818 CCTTTTAGCTAGATGGAATTCTGCG 60.050 44.000 9.91 0.00 0.00 5.18
4131 5492 6.128391 GGAATTCTGCGTATTGTTTGTAGTGA 60.128 38.462 5.23 0.00 0.00 3.41
4171 5532 1.076412 TGGTTTGGGCTGCTTGTCA 60.076 52.632 0.00 0.00 0.00 3.58
4215 5576 1.996191 GCGCTCATATAGGCTAACAGC 59.004 52.381 0.00 2.99 41.46 4.40
4303 5665 6.824196 TGATAAATATTAACGGTCTGCACCAA 59.176 34.615 0.00 0.00 44.02 3.67
4320 5682 4.482386 CACCAACTTGATCAAGATGCTTG 58.518 43.478 36.15 27.74 39.12 4.01
4490 5961 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.000 0.00 0.00 39.00 2.78
4532 6003 3.258622 GGGAAAGGCTGCGTACTATAGAT 59.741 47.826 6.78 0.00 0.00 1.98
4591 6062 2.275418 CGGGCTGCCCTTTGGTAT 59.725 61.111 33.39 0.00 42.67 2.73
4650 6121 8.781951 TCCAAGGAAATAAGTCATCTCCTAAAT 58.218 33.333 0.00 0.00 35.41 1.40
4652 6123 8.348507 CAAGGAAATAAGTCATCTCCTAAATGC 58.651 37.037 0.00 0.00 35.41 3.56
4694 6165 1.271926 TGAGGTGGACGACTGAGATCA 60.272 52.381 0.00 0.00 0.00 2.92
4695 6166 1.819288 GAGGTGGACGACTGAGATCAA 59.181 52.381 0.00 0.00 0.00 2.57
4738 6209 4.050852 GCAAGAGCCCAGAAATTAATGG 57.949 45.455 2.48 2.48 36.27 3.16
5131 6602 3.762288 AGTTTTCCTTTCTTAATCCCCGC 59.238 43.478 0.00 0.00 0.00 6.13
5132 6603 3.443145 TTTCCTTTCTTAATCCCCGCA 57.557 42.857 0.00 0.00 0.00 5.69
5133 6604 3.443145 TTCCTTTCTTAATCCCCGCAA 57.557 42.857 0.00 0.00 0.00 4.85
5134 6605 3.662759 TCCTTTCTTAATCCCCGCAAT 57.337 42.857 0.00 0.00 0.00 3.56
5135 6606 3.976015 TCCTTTCTTAATCCCCGCAATT 58.024 40.909 0.00 0.00 0.00 2.32
5136 6607 4.349365 TCCTTTCTTAATCCCCGCAATTT 58.651 39.130 0.00 0.00 0.00 1.82
5137 6608 4.159506 TCCTTTCTTAATCCCCGCAATTTG 59.840 41.667 0.00 0.00 0.00 2.32
5138 6609 4.159506 CCTTTCTTAATCCCCGCAATTTGA 59.840 41.667 0.00 0.00 0.00 2.69
5139 6610 4.981806 TTCTTAATCCCCGCAATTTGAG 57.018 40.909 0.00 0.00 0.00 3.02
5140 6611 3.287222 TCTTAATCCCCGCAATTTGAGG 58.713 45.455 11.83 11.83 37.06 3.86
5141 6612 1.398692 TAATCCCCGCAATTTGAGGC 58.601 50.000 13.18 0.00 35.89 4.70
5142 6613 0.614415 AATCCCCGCAATTTGAGGCA 60.614 50.000 13.18 3.02 35.89 4.75
5143 6614 0.614415 ATCCCCGCAATTTGAGGCAA 60.614 50.000 13.18 4.26 35.89 4.52
5144 6615 1.216178 CCCCGCAATTTGAGGCAAG 59.784 57.895 13.18 0.95 35.89 4.01
5145 6616 1.250154 CCCCGCAATTTGAGGCAAGA 61.250 55.000 13.18 0.00 35.89 3.02
5146 6617 0.819582 CCCGCAATTTGAGGCAAGAT 59.180 50.000 13.18 0.00 35.89 2.40
5147 6618 1.202336 CCCGCAATTTGAGGCAAGATC 60.202 52.381 13.18 0.00 35.89 2.75
5148 6619 1.473677 CCGCAATTTGAGGCAAGATCA 59.526 47.619 6.22 0.00 28.70 2.92
5149 6620 2.479049 CCGCAATTTGAGGCAAGATCAG 60.479 50.000 6.22 0.00 28.70 2.90
5150 6621 2.421073 CGCAATTTGAGGCAAGATCAGA 59.579 45.455 0.00 0.00 0.00 3.27
5151 6622 3.119743 CGCAATTTGAGGCAAGATCAGAA 60.120 43.478 0.00 0.00 0.00 3.02
5152 6623 4.421948 GCAATTTGAGGCAAGATCAGAAG 58.578 43.478 0.00 0.00 0.00 2.85
5153 6624 4.677250 GCAATTTGAGGCAAGATCAGAAGG 60.677 45.833 0.00 0.00 0.00 3.46
5154 6625 4.581309 ATTTGAGGCAAGATCAGAAGGA 57.419 40.909 0.00 0.00 0.00 3.36
5155 6626 4.371624 TTTGAGGCAAGATCAGAAGGAA 57.628 40.909 0.00 0.00 0.00 3.36
5156 6627 3.340814 TGAGGCAAGATCAGAAGGAAC 57.659 47.619 0.00 0.00 0.00 3.62
5158 6629 3.269178 GAGGCAAGATCAGAAGGAACTG 58.731 50.000 0.00 0.00 40.86 3.16
5159 6630 1.742268 GGCAAGATCAGAAGGAACTGC 59.258 52.381 0.00 0.00 40.86 4.40
5160 6631 1.396301 GCAAGATCAGAAGGAACTGCG 59.604 52.381 0.00 0.00 40.58 5.18
5161 6632 1.396301 CAAGATCAGAAGGAACTGCGC 59.604 52.381 0.00 0.00 40.58 6.09
5162 6633 0.459237 AGATCAGAAGGAACTGCGCG 60.459 55.000 0.00 0.00 40.58 6.86
5163 6634 0.737715 GATCAGAAGGAACTGCGCGT 60.738 55.000 8.43 0.01 40.58 6.01
5164 6635 1.016130 ATCAGAAGGAACTGCGCGTG 61.016 55.000 8.43 3.52 40.58 5.34
5165 6636 3.044305 AGAAGGAACTGCGCGTGC 61.044 61.111 15.48 15.48 40.58 5.34
5182 6653 4.377370 CATCCGTGCTTGTCCACA 57.623 55.556 0.00 0.00 35.47 4.17
5183 6654 2.165380 CATCCGTGCTTGTCCACAG 58.835 57.895 0.00 0.00 35.47 3.66
5184 6655 1.003355 ATCCGTGCTTGTCCACAGG 60.003 57.895 0.00 0.00 35.47 4.00
5186 6657 3.357079 CGTGCTTGTCCACAGGCC 61.357 66.667 10.95 0.00 46.80 5.19
5187 6658 2.203337 GTGCTTGTCCACAGGCCA 60.203 61.111 5.01 0.00 46.80 5.36
5188 6659 1.604593 GTGCTTGTCCACAGGCCAT 60.605 57.895 5.01 0.00 46.80 4.40
5189 6660 1.153524 TGCTTGTCCACAGGCCATT 59.846 52.632 5.01 0.00 46.80 3.16
5190 6661 0.403655 TGCTTGTCCACAGGCCATTA 59.596 50.000 5.01 0.00 46.80 1.90
5191 6662 1.098050 GCTTGTCCACAGGCCATTAG 58.902 55.000 5.01 0.00 42.31 1.73
5192 6663 1.755179 CTTGTCCACAGGCCATTAGG 58.245 55.000 5.01 0.53 38.23 2.69
5193 6664 1.004745 CTTGTCCACAGGCCATTAGGT 59.995 52.381 5.01 0.00 37.19 3.08
5194 6665 0.618458 TGTCCACAGGCCATTAGGTC 59.382 55.000 5.01 0.00 40.92 3.85
5195 6666 0.462047 GTCCACAGGCCATTAGGTCG 60.462 60.000 5.01 0.00 46.92 4.79
5196 6667 0.907704 TCCACAGGCCATTAGGTCGT 60.908 55.000 5.01 0.00 46.92 4.34
5197 6668 0.744414 CCACAGGCCATTAGGTCGTG 60.744 60.000 5.01 0.00 46.92 4.35
5198 6669 0.036388 CACAGGCCATTAGGTCGTGT 60.036 55.000 5.01 0.00 46.92 4.49
5199 6670 0.036388 ACAGGCCATTAGGTCGTGTG 60.036 55.000 5.01 0.00 46.92 3.82
5200 6671 1.078426 AGGCCATTAGGTCGTGTGC 60.078 57.895 5.01 0.00 46.92 4.57
5201 6672 1.376683 GGCCATTAGGTCGTGTGCA 60.377 57.895 0.00 0.00 37.19 4.57
5202 6673 0.958382 GGCCATTAGGTCGTGTGCAA 60.958 55.000 0.00 0.00 37.19 4.08
5203 6674 0.878416 GCCATTAGGTCGTGTGCAAA 59.122 50.000 0.00 0.00 37.19 3.68
5204 6675 1.401018 GCCATTAGGTCGTGTGCAAAC 60.401 52.381 0.00 0.00 37.19 2.93
5205 6676 1.199097 CCATTAGGTCGTGTGCAAACC 59.801 52.381 0.17 1.01 0.00 3.27
5206 6677 2.151202 CATTAGGTCGTGTGCAAACCT 58.849 47.619 13.82 13.82 45.30 3.50
5207 6678 1.588674 TTAGGTCGTGTGCAAACCTG 58.411 50.000 17.22 0.00 43.23 4.00
5218 6689 1.408422 GCAAACCTGCTAGCAAAACG 58.592 50.000 19.86 6.80 45.74 3.60
5219 6690 1.269051 GCAAACCTGCTAGCAAAACGT 60.269 47.619 19.86 9.52 45.74 3.99
5220 6691 2.650608 CAAACCTGCTAGCAAAACGTC 58.349 47.619 19.86 0.00 0.00 4.34
5221 6692 1.235724 AACCTGCTAGCAAAACGTCC 58.764 50.000 19.86 0.00 0.00 4.79
5222 6693 0.396811 ACCTGCTAGCAAAACGTCCT 59.603 50.000 19.86 0.00 0.00 3.85
5223 6694 0.798776 CCTGCTAGCAAAACGTCCTG 59.201 55.000 19.86 3.28 0.00 3.86
5224 6695 0.798776 CTGCTAGCAAAACGTCCTGG 59.201 55.000 19.86 0.00 0.00 4.45
5225 6696 0.107831 TGCTAGCAAAACGTCCTGGT 59.892 50.000 16.84 6.74 0.00 4.00
5226 6697 0.796927 GCTAGCAAAACGTCCTGGTC 59.203 55.000 10.63 0.00 0.00 4.02
5227 6698 1.068474 CTAGCAAAACGTCCTGGTCG 58.932 55.000 11.71 11.71 0.00 4.79
5228 6699 0.320073 TAGCAAAACGTCCTGGTCGG 60.320 55.000 17.11 1.16 0.00 4.79
5229 6700 1.890510 GCAAAACGTCCTGGTCGGT 60.891 57.895 17.11 8.24 0.00 4.69
5230 6701 0.600782 GCAAAACGTCCTGGTCGGTA 60.601 55.000 17.11 0.00 0.00 4.02
5231 6702 1.425412 CAAAACGTCCTGGTCGGTAG 58.575 55.000 17.11 4.11 0.00 3.18
5232 6703 1.043022 AAAACGTCCTGGTCGGTAGT 58.957 50.000 17.11 0.35 0.00 2.73
5233 6704 0.316204 AAACGTCCTGGTCGGTAGTG 59.684 55.000 17.11 0.00 0.00 2.74
5234 6705 0.825010 AACGTCCTGGTCGGTAGTGT 60.825 55.000 17.11 0.00 0.00 3.55
5235 6706 0.825010 ACGTCCTGGTCGGTAGTGTT 60.825 55.000 17.11 0.00 0.00 3.32
5236 6707 0.316204 CGTCCTGGTCGGTAGTGTTT 59.684 55.000 5.40 0.00 0.00 2.83
5237 6708 1.269936 CGTCCTGGTCGGTAGTGTTTT 60.270 52.381 5.40 0.00 0.00 2.43
5238 6709 2.804212 CGTCCTGGTCGGTAGTGTTTTT 60.804 50.000 5.40 0.00 0.00 1.94
5256 6727 3.507162 TTTTGCAATGAGACCCAGAGA 57.493 42.857 0.00 0.00 0.00 3.10
5257 6728 3.507162 TTTGCAATGAGACCCAGAGAA 57.493 42.857 0.00 0.00 0.00 2.87
5258 6729 3.726557 TTGCAATGAGACCCAGAGAAT 57.273 42.857 0.00 0.00 0.00 2.40
5259 6730 4.842531 TTGCAATGAGACCCAGAGAATA 57.157 40.909 0.00 0.00 0.00 1.75
5260 6731 4.142609 TGCAATGAGACCCAGAGAATAC 57.857 45.455 0.00 0.00 0.00 1.89
5261 6732 3.519107 TGCAATGAGACCCAGAGAATACA 59.481 43.478 0.00 0.00 0.00 2.29
5262 6733 4.125703 GCAATGAGACCCAGAGAATACAG 58.874 47.826 0.00 0.00 0.00 2.74
5263 6734 4.383552 GCAATGAGACCCAGAGAATACAGT 60.384 45.833 0.00 0.00 0.00 3.55
5264 6735 5.163405 GCAATGAGACCCAGAGAATACAGTA 60.163 44.000 0.00 0.00 0.00 2.74
5265 6736 6.630413 GCAATGAGACCCAGAGAATACAGTAA 60.630 42.308 0.00 0.00 0.00 2.24
5266 6737 7.504403 CAATGAGACCCAGAGAATACAGTAAT 58.496 38.462 0.00 0.00 0.00 1.89
5267 6738 8.642432 CAATGAGACCCAGAGAATACAGTAATA 58.358 37.037 0.00 0.00 0.00 0.98
5268 6739 8.964533 ATGAGACCCAGAGAATACAGTAATAT 57.035 34.615 0.00 0.00 0.00 1.28
5269 6740 8.783660 TGAGACCCAGAGAATACAGTAATATT 57.216 34.615 0.00 0.00 0.00 1.28
5270 6741 8.642432 TGAGACCCAGAGAATACAGTAATATTG 58.358 37.037 0.00 0.00 0.00 1.90
5271 6742 8.783660 AGACCCAGAGAATACAGTAATATTGA 57.216 34.615 0.00 0.00 0.00 2.57
5272 6743 8.643324 AGACCCAGAGAATACAGTAATATTGAC 58.357 37.037 0.00 0.00 0.00 3.18
5273 6744 7.434492 ACCCAGAGAATACAGTAATATTGACG 58.566 38.462 0.00 0.00 0.00 4.35
5274 6745 7.287005 ACCCAGAGAATACAGTAATATTGACGA 59.713 37.037 0.00 0.00 0.00 4.20
5275 6746 7.810282 CCCAGAGAATACAGTAATATTGACGAG 59.190 40.741 0.00 0.00 0.00 4.18
5276 6747 8.568794 CCAGAGAATACAGTAATATTGACGAGA 58.431 37.037 0.00 0.00 0.00 4.04
5279 6750 8.749841 AGAATACAGTAATATTGACGAGATGC 57.250 34.615 0.00 0.00 0.00 3.91
5280 6751 7.815068 AGAATACAGTAATATTGACGAGATGCC 59.185 37.037 0.00 0.00 0.00 4.40
5281 6752 4.632153 ACAGTAATATTGACGAGATGCCC 58.368 43.478 0.00 0.00 0.00 5.36
5282 6753 4.345257 ACAGTAATATTGACGAGATGCCCT 59.655 41.667 0.00 0.00 0.00 5.19
5283 6754 5.163301 ACAGTAATATTGACGAGATGCCCTT 60.163 40.000 0.00 0.00 0.00 3.95
5284 6755 5.406780 CAGTAATATTGACGAGATGCCCTTC 59.593 44.000 0.00 0.00 0.00 3.46
5285 6756 4.696479 AATATTGACGAGATGCCCTTCT 57.304 40.909 0.00 0.00 0.00 2.85
5286 6757 2.611225 ATTGACGAGATGCCCTTCTC 57.389 50.000 0.00 2.11 39.03 2.87
5287 6758 1.561643 TTGACGAGATGCCCTTCTCT 58.438 50.000 8.84 0.00 40.03 3.10
5288 6759 1.561643 TGACGAGATGCCCTTCTCTT 58.438 50.000 8.84 1.08 40.03 2.85
5289 6760 1.478510 TGACGAGATGCCCTTCTCTTC 59.521 52.381 9.38 9.38 40.03 2.87
5290 6761 1.754226 GACGAGATGCCCTTCTCTTCT 59.246 52.381 8.84 0.00 40.03 2.85
5291 6762 1.480137 ACGAGATGCCCTTCTCTTCTG 59.520 52.381 8.84 0.00 40.03 3.02
5292 6763 1.753649 CGAGATGCCCTTCTCTTCTGA 59.246 52.381 8.84 0.00 40.03 3.27
5293 6764 2.167281 CGAGATGCCCTTCTCTTCTGAA 59.833 50.000 8.84 0.00 40.03 3.02
5294 6765 3.368843 CGAGATGCCCTTCTCTTCTGAAA 60.369 47.826 8.84 0.00 40.03 2.69
5295 6766 4.682859 CGAGATGCCCTTCTCTTCTGAAAT 60.683 45.833 8.84 0.00 40.03 2.17
5296 6767 5.190357 AGATGCCCTTCTCTTCTGAAATT 57.810 39.130 0.00 0.00 0.00 1.82
5297 6768 5.578073 AGATGCCCTTCTCTTCTGAAATTT 58.422 37.500 0.00 0.00 0.00 1.82
5298 6769 5.418209 AGATGCCCTTCTCTTCTGAAATTTG 59.582 40.000 0.00 0.00 0.00 2.32
5299 6770 4.473444 TGCCCTTCTCTTCTGAAATTTGT 58.527 39.130 0.00 0.00 0.00 2.83
5300 6771 4.279169 TGCCCTTCTCTTCTGAAATTTGTG 59.721 41.667 0.00 0.00 0.00 3.33
5301 6772 4.520492 GCCCTTCTCTTCTGAAATTTGTGA 59.480 41.667 0.00 0.00 0.00 3.58
5302 6773 5.010012 GCCCTTCTCTTCTGAAATTTGTGAA 59.990 40.000 0.00 0.00 0.00 3.18
5303 6774 6.461509 GCCCTTCTCTTCTGAAATTTGTGAAA 60.462 38.462 0.00 0.00 0.00 2.69
5304 6775 7.491682 CCCTTCTCTTCTGAAATTTGTGAAAA 58.508 34.615 0.00 0.00 0.00 2.29
5305 6776 7.436376 CCCTTCTCTTCTGAAATTTGTGAAAAC 59.564 37.037 0.00 0.00 0.00 2.43
5306 6777 8.193438 CCTTCTCTTCTGAAATTTGTGAAAACT 58.807 33.333 0.00 0.00 0.00 2.66
5307 6778 9.578439 CTTCTCTTCTGAAATTTGTGAAAACTT 57.422 29.630 0.00 0.00 0.00 2.66
5308 6779 9.927668 TTCTCTTCTGAAATTTGTGAAAACTTT 57.072 25.926 0.00 0.00 0.00 2.66
5309 6780 9.927668 TCTCTTCTGAAATTTGTGAAAACTTTT 57.072 25.926 0.00 0.00 0.00 2.27
5312 6783 9.545611 CTTCTGAAATTTGTGAAAACTTTTTGG 57.454 29.630 0.00 0.00 0.00 3.28
5313 6784 8.839310 TCTGAAATTTGTGAAAACTTTTTGGA 57.161 26.923 0.00 0.00 0.00 3.53
5314 6785 8.716909 TCTGAAATTTGTGAAAACTTTTTGGAC 58.283 29.630 0.00 0.00 0.00 4.02
5315 6786 7.811653 TGAAATTTGTGAAAACTTTTTGGACC 58.188 30.769 0.00 0.00 0.00 4.46
5316 6787 7.663493 TGAAATTTGTGAAAACTTTTTGGACCT 59.337 29.630 0.00 0.00 0.00 3.85
5317 6788 6.983474 ATTTGTGAAAACTTTTTGGACCTG 57.017 33.333 0.00 0.00 0.00 4.00
5318 6789 4.464069 TGTGAAAACTTTTTGGACCTGG 57.536 40.909 0.00 0.00 0.00 4.45
5319 6790 4.090090 TGTGAAAACTTTTTGGACCTGGA 58.910 39.130 0.00 0.00 0.00 3.86
5320 6791 4.159506 TGTGAAAACTTTTTGGACCTGGAG 59.840 41.667 0.00 0.00 0.00 3.86
5321 6792 3.704061 TGAAAACTTTTTGGACCTGGAGG 59.296 43.478 0.00 0.00 42.17 4.30
5322 6793 2.381752 AACTTTTTGGACCTGGAGGG 57.618 50.000 0.00 0.00 40.27 4.30
5330 6801 1.578703 TGGACCTGGAGGGATAAGCTA 59.421 52.381 0.00 0.00 40.27 3.32
5331 6802 2.252714 GGACCTGGAGGGATAAGCTAG 58.747 57.143 0.00 0.00 40.27 3.42
5332 6803 2.158295 GGACCTGGAGGGATAAGCTAGA 60.158 54.545 0.00 0.00 40.27 2.43
5334 6805 1.899142 CCTGGAGGGATAAGCTAGAGC 59.101 57.143 0.00 0.00 38.24 4.09
5378 6849 0.472471 TTTTTGGACCTGGAGCGAGT 59.528 50.000 0.00 0.00 0.00 4.18
5388 6859 0.962855 TGGAGCGAGTGAGAGTCCAG 60.963 60.000 0.00 0.00 32.21 3.86
5424 6895 1.078988 GCCCGGTGTGGACGATTTA 60.079 57.895 0.00 0.00 42.00 1.40
5443 6914 6.183360 CGATTTACTTGTGGACAGAGGAGATA 60.183 42.308 0.00 0.00 0.00 1.98
5514 6985 2.363925 GGGAGCGGAGGTAGGTGT 60.364 66.667 0.00 0.00 39.88 4.16
5517 6988 2.683933 AGCGGAGGTAGGTGTGGG 60.684 66.667 0.00 0.00 35.08 4.61
5518 6989 3.782443 GCGGAGGTAGGTGTGGGG 61.782 72.222 0.00 0.00 0.00 4.96
5519 6990 2.284405 CGGAGGTAGGTGTGGGGT 60.284 66.667 0.00 0.00 0.00 4.95
5520 6991 1.916777 CGGAGGTAGGTGTGGGGTT 60.917 63.158 0.00 0.00 0.00 4.11
5521 6992 1.683441 GGAGGTAGGTGTGGGGTTG 59.317 63.158 0.00 0.00 0.00 3.77
5522 6993 1.683441 GAGGTAGGTGTGGGGTTGG 59.317 63.158 0.00 0.00 0.00 3.77
5523 6994 1.073242 AGGTAGGTGTGGGGTTGGT 60.073 57.895 0.00 0.00 0.00 3.67
5524 6995 0.699922 AGGTAGGTGTGGGGTTGGTT 60.700 55.000 0.00 0.00 0.00 3.67
5525 6996 0.538746 GGTAGGTGTGGGGTTGGTTG 60.539 60.000 0.00 0.00 0.00 3.77
5526 6997 0.184211 GTAGGTGTGGGGTTGGTTGT 59.816 55.000 0.00 0.00 0.00 3.32
5527 6998 0.927767 TAGGTGTGGGGTTGGTTGTT 59.072 50.000 0.00 0.00 0.00 2.83
5528 6999 0.686112 AGGTGTGGGGTTGGTTGTTG 60.686 55.000 0.00 0.00 0.00 3.33
5529 7000 1.681486 GGTGTGGGGTTGGTTGTTGG 61.681 60.000 0.00 0.00 0.00 3.77
5530 7001 1.381872 TGTGGGGTTGGTTGTTGGG 60.382 57.895 0.00 0.00 0.00 4.12
5531 7002 1.075896 GTGGGGTTGGTTGTTGGGA 60.076 57.895 0.00 0.00 0.00 4.37
5532 7003 0.688087 GTGGGGTTGGTTGTTGGGAA 60.688 55.000 0.00 0.00 0.00 3.97
5533 7004 0.042731 TGGGGTTGGTTGTTGGGAAA 59.957 50.000 0.00 0.00 0.00 3.13
5534 7005 1.205055 GGGGTTGGTTGTTGGGAAAA 58.795 50.000 0.00 0.00 0.00 2.29
5535 7006 1.560146 GGGGTTGGTTGTTGGGAAAAA 59.440 47.619 0.00 0.00 0.00 1.94
5536 7007 2.420827 GGGGTTGGTTGTTGGGAAAAAG 60.421 50.000 0.00 0.00 0.00 2.27
5537 7008 2.502130 GGGTTGGTTGTTGGGAAAAAGA 59.498 45.455 0.00 0.00 0.00 2.52
5538 7009 3.055021 GGGTTGGTTGTTGGGAAAAAGAA 60.055 43.478 0.00 0.00 0.00 2.52
5539 7010 4.188462 GGTTGGTTGTTGGGAAAAAGAAG 58.812 43.478 0.00 0.00 0.00 2.85
5540 7011 4.188462 GTTGGTTGTTGGGAAAAAGAAGG 58.812 43.478 0.00 0.00 0.00 3.46
5541 7012 3.445987 TGGTTGTTGGGAAAAAGAAGGT 58.554 40.909 0.00 0.00 0.00 3.50
5542 7013 3.841255 TGGTTGTTGGGAAAAAGAAGGTT 59.159 39.130 0.00 0.00 0.00 3.50
5543 7014 4.081365 TGGTTGTTGGGAAAAAGAAGGTTC 60.081 41.667 0.00 0.00 0.00 3.62
5544 7015 4.109766 GTTGTTGGGAAAAAGAAGGTTCG 58.890 43.478 0.00 0.00 0.00 3.95
5545 7016 2.691011 TGTTGGGAAAAAGAAGGTTCGG 59.309 45.455 0.00 0.00 0.00 4.30
5686 7157 4.411927 TGGGTTAGAGAGAGATAGGATGC 58.588 47.826 0.00 0.00 0.00 3.91
5730 7226 4.755266 AGTGTTGGGTCATATAGTCCAC 57.245 45.455 0.00 0.00 0.00 4.02
5805 7301 3.577848 ACATAAGGTTGGAATTTGCTGCA 59.422 39.130 0.00 0.00 0.00 4.41
6185 7776 5.289917 TGCTAAACCGTGAATTGTATGTG 57.710 39.130 0.00 0.00 0.00 3.21
6514 9411 2.859538 CCGGATTTTTGGAATCAATGCG 59.140 45.455 0.00 0.00 40.30 4.73
6610 9507 3.190874 CACCTAGTTCTGAATTCGCTCC 58.809 50.000 0.04 0.00 0.00 4.70
6767 9668 4.922692 TGCTGCTATATGTTTTGTTGCAAC 59.077 37.500 22.83 22.83 0.00 4.17
6860 9761 1.396301 CAAGATCAGAAGGAACTGCGC 59.604 52.381 0.00 0.00 40.58 6.09
6888 9789 1.153524 TGCTTGTCCACAGGCCATT 59.846 52.632 5.01 0.00 46.80 3.16
6919 9820 2.650608 CAAACCTGCTAGCAAAACGTC 58.349 47.619 19.86 0.00 0.00 4.34
6937 9838 2.804212 CGTCCTGGTCGGTAGTGTTTTT 60.804 50.000 5.40 0.00 0.00 1.94
6966 9868 8.642432 CAATGAGACCCAGAGAATACAGTAATA 58.358 37.037 0.00 0.00 0.00 0.98
6968 9870 8.783660 TGAGACCCAGAGAATACAGTAATATT 57.216 34.615 0.00 0.00 0.00 1.28
6971 9873 8.643324 AGACCCAGAGAATACAGTAATATTGAC 58.357 37.037 0.00 0.00 0.00 3.18
7037 9940 2.846193 TGCAACACTTCACCTTAGGAC 58.154 47.619 4.77 0.00 0.00 3.85
7068 9971 7.861629 ACCTGGTTTGATTCATTCTATAGTGA 58.138 34.615 0.00 0.00 0.00 3.41
7111 10014 0.693049 TCCCTGCAACCTTCTTCTCC 59.307 55.000 0.00 0.00 0.00 3.71
7131 10034 2.890371 GGCATGGAAGCAGCCTTG 59.110 61.111 0.00 6.43 44.92 3.61
7194 10097 6.373216 CGGAGTTAACCATCTAAATTGGTCAA 59.627 38.462 0.88 0.00 46.75 3.18
7203 10106 9.927668 ACCATCTAAATTGGTCAAAATACTTTG 57.072 29.630 0.00 0.00 44.15 2.77
7243 10147 7.276878 TGTCATCACTTATTTACCATACACACG 59.723 37.037 0.00 0.00 0.00 4.49
7366 10271 1.062002 CAACCCGTTTGCTACTATGCG 59.938 52.381 0.00 0.00 35.36 4.73
7367 10272 1.087771 ACCCGTTTGCTACTATGCGC 61.088 55.000 0.00 0.00 35.36 6.09
7399 10305 5.215160 CCTTCACTTGTTTTCCTTCAATCG 58.785 41.667 0.00 0.00 0.00 3.34
7400 10306 4.223320 TCACTTGTTTTCCTTCAATCGC 57.777 40.909 0.00 0.00 0.00 4.58
7401 10307 3.882888 TCACTTGTTTTCCTTCAATCGCT 59.117 39.130 0.00 0.00 0.00 4.93
7402 10308 4.338118 TCACTTGTTTTCCTTCAATCGCTT 59.662 37.500 0.00 0.00 0.00 4.68
7403 10309 4.676924 CACTTGTTTTCCTTCAATCGCTTC 59.323 41.667 0.00 0.00 0.00 3.86
7404 10310 4.338118 ACTTGTTTTCCTTCAATCGCTTCA 59.662 37.500 0.00 0.00 0.00 3.02
7405 10311 5.010012 ACTTGTTTTCCTTCAATCGCTTCAT 59.990 36.000 0.00 0.00 0.00 2.57
7406 10312 5.452078 TGTTTTCCTTCAATCGCTTCATT 57.548 34.783 0.00 0.00 0.00 2.57
7407 10313 5.841810 TGTTTTCCTTCAATCGCTTCATTT 58.158 33.333 0.00 0.00 0.00 2.32
7408 10314 5.920273 TGTTTTCCTTCAATCGCTTCATTTC 59.080 36.000 0.00 0.00 0.00 2.17
7409 10315 5.964958 TTTCCTTCAATCGCTTCATTTCT 57.035 34.783 0.00 0.00 0.00 2.52
7410 10316 5.964958 TTCCTTCAATCGCTTCATTTCTT 57.035 34.783 0.00 0.00 0.00 2.52
7411 10317 5.300969 TCCTTCAATCGCTTCATTTCTTG 57.699 39.130 0.00 0.00 0.00 3.02
7415 10321 5.046910 TCAATCGCTTCATTTCTTGGTTC 57.953 39.130 0.00 0.00 0.00 3.62
7420 10326 3.003689 CGCTTCATTTCTTGGTTCAGTGT 59.996 43.478 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.188048 GGACTGTTGTTCATCAAGAGCAG 59.812 47.826 4.98 0.00 46.95 4.24
68 69 5.360999 GGAAAATTTCCCCTTCTCCATAGTG 59.639 44.000 13.61 0.00 44.30 2.74
116 118 1.955080 GAGGGAGTATGTTCGACGGAT 59.045 52.381 0.00 0.00 0.00 4.18
162 166 5.975410 AATCGAGCTGCTAAACAATACTC 57.025 39.130 0.15 0.00 0.00 2.59
169 173 2.742053 TCCACAAATCGAGCTGCTAAAC 59.258 45.455 0.15 0.00 0.00 2.01
191 195 2.498056 CCTGGGTTTTGCTTGCGGT 61.498 57.895 0.00 0.00 0.00 5.68
192 196 2.339712 CCTGGGTTTTGCTTGCGG 59.660 61.111 0.00 0.00 0.00 5.69
285 294 2.897969 TGCCCCCTCGAAGAATATCTAC 59.102 50.000 0.00 0.00 34.09 2.59
308 317 2.859032 GCTCGGTGATGTTCGTCCTATC 60.859 54.545 0.00 0.00 0.00 2.08
315 324 0.388520 TCAGTGCTCGGTGATGTTCG 60.389 55.000 0.00 0.00 0.00 3.95
500 517 0.840729 CGTAAAGCGAGACGAGATGC 59.159 55.000 0.00 0.00 44.77 3.91
538 556 3.222603 TGCTTCCTCCTTTCTTTGGTTC 58.777 45.455 0.00 0.00 0.00 3.62
665 691 2.280119 TAGGATGATGCACGCCGC 60.280 61.111 0.00 0.00 42.89 6.53
666 692 2.302952 CGTAGGATGATGCACGCCG 61.303 63.158 0.00 0.00 0.00 6.46
667 693 3.630204 CGTAGGATGATGCACGCC 58.370 61.111 0.00 0.00 0.00 5.68
810 836 3.700350 AGGGGAGGGGAGGGTGAG 61.700 72.222 0.00 0.00 0.00 3.51
811 837 3.695825 GAGGGGAGGGGAGGGTGA 61.696 72.222 0.00 0.00 0.00 4.02
812 838 4.825679 GGAGGGGAGGGGAGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
1197 1232 3.626222 CCGGAGATATAAGAGAGAGGGGG 60.626 56.522 0.00 0.00 0.00 5.40
1202 1237 4.534500 AGAGAGCCGGAGATATAAGAGAGA 59.466 45.833 5.05 0.00 0.00 3.10
1209 1256 2.025793 CCAGGAGAGAGCCGGAGATATA 60.026 54.545 5.05 0.00 0.00 0.86
1210 1257 1.272425 CCAGGAGAGAGCCGGAGATAT 60.272 57.143 5.05 0.00 0.00 1.63
1211 1258 0.111446 CCAGGAGAGAGCCGGAGATA 59.889 60.000 5.05 0.00 0.00 1.98
1212 1259 1.152567 CCAGGAGAGAGCCGGAGAT 60.153 63.158 5.05 0.00 0.00 2.75
1240 1345 0.911769 AAGCAGTCAATCCCCATCGA 59.088 50.000 0.00 0.00 0.00 3.59
1253 1358 1.676967 GCCTAGCCAAGCAAGCAGT 60.677 57.895 0.00 0.00 0.00 4.40
1378 2009 5.881923 ATTTGTAGTTAGGGAAGGCGATA 57.118 39.130 0.00 0.00 0.00 2.92
1392 2023 3.380471 TGGGCCATAGCAATTTGTAGT 57.620 42.857 0.00 0.00 42.56 2.73
1408 2039 1.438814 CAGAATTGGGCGAATGGGC 59.561 57.895 0.00 0.00 41.35 5.36
1410 2041 1.321805 TGGCAGAATTGGGCGAATGG 61.322 55.000 0.00 0.00 0.00 3.16
1433 2064 5.007724 GCCAATACTAGTAGCACCAACATTC 59.992 44.000 8.85 0.00 0.00 2.67
1435 2066 4.164221 AGCCAATACTAGTAGCACCAACAT 59.836 41.667 8.85 0.00 0.00 2.71
1447 2081 3.378427 GTGGGAAAGCAAGCCAATACTAG 59.622 47.826 0.00 0.00 0.00 2.57
1450 2084 1.204704 GGTGGGAAAGCAAGCCAATAC 59.795 52.381 0.00 0.00 0.00 1.89
1452 2086 1.194121 GGGTGGGAAAGCAAGCCAAT 61.194 55.000 0.00 0.00 0.00 3.16
1453 2087 1.836604 GGGTGGGAAAGCAAGCCAA 60.837 57.895 0.00 0.00 0.00 4.52
1454 2088 1.431195 TAGGGTGGGAAAGCAAGCCA 61.431 55.000 0.00 0.00 33.82 4.75
1455 2089 0.965866 GTAGGGTGGGAAAGCAAGCC 60.966 60.000 0.00 0.00 0.00 4.35
1456 2090 0.038310 AGTAGGGTGGGAAAGCAAGC 59.962 55.000 0.00 0.00 0.00 4.01
1457 2091 1.614317 CCAGTAGGGTGGGAAAGCAAG 60.614 57.143 0.00 0.00 33.46 4.01
1458 2092 0.404040 CCAGTAGGGTGGGAAAGCAA 59.596 55.000 0.00 0.00 33.46 3.91
1459 2093 0.474854 TCCAGTAGGGTGGGAAAGCA 60.475 55.000 0.00 0.00 38.26 3.91
1510 2150 1.136305 GGATAGTGCTTGCTGGTACGA 59.864 52.381 0.00 0.00 0.00 3.43
1528 2168 5.414789 TTCCATTCATCTCAAACTACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1684 2326 3.153919 TCCTAAAACACCTTGGTGCATC 58.846 45.455 18.67 0.00 0.00 3.91
1820 2462 4.305769 GAGGATGGAAATGAGAGACATCG 58.694 47.826 0.00 0.00 38.97 3.84
1937 2583 2.980476 GCGCTAAAAAGTCTTTGGAAGC 59.020 45.455 0.00 13.17 0.00 3.86
1957 2603 6.419413 GCAGTGTAGAACTATATGAACTCTGC 59.581 42.308 10.37 10.37 43.06 4.26
1974 2620 5.886960 ATCTAAGCCAAAAAGCAGTGTAG 57.113 39.130 0.00 0.00 34.23 2.74
1979 2625 5.841957 ATGGTATCTAAGCCAAAAAGCAG 57.158 39.130 0.00 0.00 38.38 4.24
1988 2634 8.478877 ACTGCATAACTATATGGTATCTAAGCC 58.521 37.037 0.00 0.00 39.49 4.35
1998 2644 4.019860 AGGGAGCACTGCATAACTATATGG 60.020 45.833 3.30 0.00 39.49 2.74
2084 2730 2.418060 CGAATTGTGGTTAATTGGCCCC 60.418 50.000 0.00 0.00 30.78 5.80
2089 2735 3.906998 TGTGGCGAATTGTGGTTAATTG 58.093 40.909 0.00 0.00 30.78 2.32
2104 2750 1.234615 ACGAGGTTGGAAATGTGGCG 61.235 55.000 0.00 0.00 0.00 5.69
2201 2847 7.041098 ACAACACATCACCTCTGAATCTTTTAC 60.041 37.037 0.00 0.00 0.00 2.01
2202 2848 6.998074 ACAACACATCACCTCTGAATCTTTTA 59.002 34.615 0.00 0.00 0.00 1.52
2222 2868 6.708949 GGTTGAACCTATTCTCTAACACAACA 59.291 38.462 7.20 0.00 36.61 3.33
2245 2891 0.998928 TGACAATGCATACCCTGGGT 59.001 50.000 24.15 24.15 40.16 4.51
2327 3520 3.133901 CCGGGCTGCCCTTTTTATTTATT 59.866 43.478 33.39 0.00 42.67 1.40
2328 3521 2.698274 CCGGGCTGCCCTTTTTATTTAT 59.302 45.455 33.39 0.00 42.67 1.40
2329 3522 2.104170 CCGGGCTGCCCTTTTTATTTA 58.896 47.619 33.39 0.00 42.67 1.40
2330 3523 0.901827 CCGGGCTGCCCTTTTTATTT 59.098 50.000 33.39 0.00 42.67 1.40
2331 3524 0.252057 ACCGGGCTGCCCTTTTTATT 60.252 50.000 33.39 8.27 42.67 1.40
2332 3525 0.970427 CACCGGGCTGCCCTTTTTAT 60.970 55.000 33.39 10.84 42.67 1.40
2333 3526 1.605165 CACCGGGCTGCCCTTTTTA 60.605 57.895 33.39 0.00 42.67 1.52
2334 3527 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
2341 3534 3.818787 CTTCATGCACCGGGCTGC 61.819 66.667 6.32 8.50 45.15 5.25
2342 3535 3.818787 GCTTCATGCACCGGGCTG 61.819 66.667 6.32 7.15 45.15 4.85
2343 3536 3.984193 GAGCTTCATGCACCGGGCT 62.984 63.158 6.32 0.81 45.94 5.19
2344 3537 3.512516 GAGCTTCATGCACCGGGC 61.513 66.667 6.32 7.25 45.94 6.13
2345 3538 2.825836 GGAGCTTCATGCACCGGG 60.826 66.667 6.32 0.00 42.21 5.73
2368 3561 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2369 3562 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2370 3563 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2371 3564 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2372 3565 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2373 3566 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2374 3567 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2375 3568 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
2376 3569 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
2377 3570 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
2378 3571 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2379 3572 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2380 3573 1.848886 AATGTGGTCGGACCCTTCCC 61.849 60.000 23.81 7.65 38.99 3.97
2381 3574 0.676782 CAATGTGGTCGGACCCTTCC 60.677 60.000 23.81 9.97 37.50 3.46
2382 3575 0.676782 CCAATGTGGTCGGACCCTTC 60.677 60.000 23.81 14.35 37.50 3.46
2383 3576 1.378762 CCAATGTGGTCGGACCCTT 59.621 57.895 23.81 12.00 37.50 3.95
2384 3577 2.602676 CCCAATGTGGTCGGACCCT 61.603 63.158 23.81 6.46 37.50 4.34
2385 3578 2.045340 CCCAATGTGGTCGGACCC 60.045 66.667 23.81 15.29 37.50 4.46
2386 3579 1.376812 GACCCAATGTGGTCGGACC 60.377 63.158 20.36 20.36 44.98 4.46
2387 3580 4.296265 GACCCAATGTGGTCGGAC 57.704 61.111 0.00 0.00 44.98 4.79
2392 3585 3.869065 CGTACAATAGACCCAATGTGGT 58.131 45.455 0.00 0.00 42.79 4.16
2393 3586 2.612212 GCGTACAATAGACCCAATGTGG 59.388 50.000 0.00 0.00 37.25 4.17
2394 3587 3.266636 TGCGTACAATAGACCCAATGTG 58.733 45.455 0.00 0.00 0.00 3.21
2395 3588 3.531538 CTGCGTACAATAGACCCAATGT 58.468 45.455 0.00 0.00 0.00 2.71
2396 3589 2.287915 GCTGCGTACAATAGACCCAATG 59.712 50.000 0.00 0.00 0.00 2.82
2397 3590 2.561569 GCTGCGTACAATAGACCCAAT 58.438 47.619 0.00 0.00 0.00 3.16
2398 3591 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2399 3592 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2400 3593 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2401 3594 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2402 3595 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2403 3596 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2404 3597 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2405 3598 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2406 3599 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2407 3600 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2408 3601 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2409 3602 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2410 3603 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2411 3604 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2412 3605 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2413 3606 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2414 3607 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2415 3608 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2416 3609 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2417 3610 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2418 3611 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2419 3612 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2420 3613 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2421 3614 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2422 3615 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2423 3616 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2424 3617 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2425 3618 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2426 3619 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2427 3620 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2428 3621 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2429 3622 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2443 3636 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2444 3637 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2445 3638 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2446 3639 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2447 3640 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2448 3641 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2449 3642 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2450 3643 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2451 3644 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2452 3645 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2453 3646 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2454 3647 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2455 3648 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2456 3649 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2457 3650 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2467 3660 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2468 3661 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2469 3662 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2470 3663 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2471 3664 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2472 3665 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2473 3666 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2474 3667 0.386838 AAAAGCTGCTGCCTTGTGAC 59.613 50.000 12.44 0.00 40.80 3.67
2475 3668 1.608590 GTAAAAGCTGCTGCCTTGTGA 59.391 47.619 12.44 0.00 40.80 3.58
2476 3669 1.336240 GGTAAAAGCTGCTGCCTTGTG 60.336 52.381 12.44 0.00 40.80 3.33
2477 3670 0.961753 GGTAAAAGCTGCTGCCTTGT 59.038 50.000 12.44 4.13 40.80 3.16
2478 3671 0.961019 TGGTAAAAGCTGCTGCCTTG 59.039 50.000 12.44 0.00 40.80 3.61
2479 3672 0.961753 GTGGTAAAAGCTGCTGCCTT 59.038 50.000 12.44 8.67 40.80 4.35
2480 3673 0.111253 AGTGGTAAAAGCTGCTGCCT 59.889 50.000 12.44 0.00 40.80 4.75
2481 3674 0.242017 CAGTGGTAAAAGCTGCTGCC 59.758 55.000 12.44 4.43 40.80 4.85
2482 3675 3.780925 CAGTGGTAAAAGCTGCTGC 57.219 52.632 1.35 7.62 40.05 5.25
2486 3679 1.210155 GGCGCAGTGGTAAAAGCTG 59.790 57.895 10.83 0.00 0.00 4.24
2487 3680 0.821711 TTGGCGCAGTGGTAAAAGCT 60.822 50.000 10.83 0.00 0.00 3.74
2488 3681 0.387239 CTTGGCGCAGTGGTAAAAGC 60.387 55.000 10.83 0.00 0.00 3.51
2489 3682 0.240945 CCTTGGCGCAGTGGTAAAAG 59.759 55.000 10.83 0.00 0.00 2.27
2490 3683 1.801309 GCCTTGGCGCAGTGGTAAAA 61.801 55.000 10.83 0.00 0.00 1.52
2491 3684 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2492 3685 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2493 3686 3.190738 AAGCCTTGGCGCAGTGGTA 62.191 57.895 10.83 0.00 0.00 3.25
2494 3687 4.586235 AAGCCTTGGCGCAGTGGT 62.586 61.111 10.83 0.00 0.00 4.16
2495 3688 3.741476 GAAGCCTTGGCGCAGTGG 61.741 66.667 10.83 8.70 0.00 4.00
2496 3689 3.741476 GGAAGCCTTGGCGCAGTG 61.741 66.667 10.83 0.00 0.00 3.66
2498 3691 4.729918 AGGGAAGCCTTGGCGCAG 62.730 66.667 10.83 0.00 0.00 5.18
2499 3692 4.284550 AAGGGAAGCCTTGGCGCA 62.285 61.111 10.83 0.00 0.00 6.09
2500 3693 3.443925 GAAGGGAAGCCTTGGCGC 61.444 66.667 0.00 0.00 0.00 6.53
2501 3694 0.967380 ATTGAAGGGAAGCCTTGGCG 60.967 55.000 5.95 0.00 0.00 5.69
2502 3695 2.027385 CTATTGAAGGGAAGCCTTGGC 58.973 52.381 2.97 2.97 0.00 4.52
2503 3696 2.027385 GCTATTGAAGGGAAGCCTTGG 58.973 52.381 0.00 0.00 0.00 3.61
2508 3701 5.852282 TTATTTGGCTATTGAAGGGAAGC 57.148 39.130 0.00 0.00 0.00 3.86
2509 3702 9.136323 ACTATTTATTTGGCTATTGAAGGGAAG 57.864 33.333 0.00 0.00 0.00 3.46
2510 3703 9.487442 AACTATTTATTTGGCTATTGAAGGGAA 57.513 29.630 0.00 0.00 0.00 3.97
2511 3704 9.487442 AAACTATTTATTTGGCTATTGAAGGGA 57.513 29.630 0.00 0.00 0.00 4.20
2512 3705 9.533253 CAAACTATTTATTTGGCTATTGAAGGG 57.467 33.333 0.00 0.00 34.11 3.95
2513 3706 9.034544 GCAAACTATTTATTTGGCTATTGAAGG 57.965 33.333 0.00 0.00 37.49 3.46
2514 3707 9.585099 TGCAAACTATTTATTTGGCTATTGAAG 57.415 29.630 0.00 0.00 37.49 3.02
2535 3728 8.934825 GGTAGCAAAAGAATGATTAAATGCAAA 58.065 29.630 0.00 0.00 35.11 3.68
2590 3796 6.563222 AAATTTTCATGGATTTTGCCACTG 57.437 33.333 0.00 0.00 41.56 3.66
3101 4319 3.306641 GCAATGCCCAATCCTTACAAACA 60.307 43.478 0.00 0.00 0.00 2.83
3433 4666 4.576463 GTGTTTGTTCACTCATTCCAGTCT 59.424 41.667 0.00 0.00 35.68 3.24
3439 4672 8.259194 CGTTTTAATGTGTTTGTTCACTCATTC 58.741 33.333 4.80 0.00 40.01 2.67
3448 4681 4.664188 AGACGCGTTTTAATGTGTTTGTT 58.336 34.783 15.53 0.00 38.65 2.83
3542 4776 6.600032 TCAAAGTCAAGTGCTTAACCAGTTTA 59.400 34.615 0.00 0.00 0.00 2.01
3561 4795 1.967319 ACCACAAGCGTGATCAAAGT 58.033 45.000 6.65 0.00 46.80 2.66
3564 4798 0.950836 CCAACCACAAGCGTGATCAA 59.049 50.000 6.65 0.00 46.80 2.57
3633 4872 4.130118 CAATTCTAGCGAATTACAGGCCT 58.870 43.478 0.00 0.00 45.57 5.19
3770 5021 5.144100 ACATACTGGGTTTTGATTTGTCCA 58.856 37.500 0.00 0.00 0.00 4.02
3771 5022 5.722021 ACATACTGGGTTTTGATTTGTCC 57.278 39.130 0.00 0.00 0.00 4.02
3772 5023 6.420604 CACAACATACTGGGTTTTGATTTGTC 59.579 38.462 0.00 0.00 29.65 3.18
3773 5024 6.127196 ACACAACATACTGGGTTTTGATTTGT 60.127 34.615 0.00 0.00 31.99 2.83
3774 5025 6.279882 ACACAACATACTGGGTTTTGATTTG 58.720 36.000 0.00 0.00 31.99 2.32
3956 5314 9.612066 ACAAACCATTAAAGTCATGACAAAAAT 57.388 25.926 27.02 18.20 0.00 1.82
3977 5335 0.527385 AACATGCGGCACACACAAAC 60.527 50.000 4.03 0.00 0.00 2.93
4070 5428 4.021981 GGTTTGTTTCTGCAAGGAGCTAAT 60.022 41.667 0.00 0.00 45.94 1.73
4116 5477 8.941977 TGATATTGTGGTCACTACAAACAATAC 58.058 33.333 11.15 1.42 42.85 1.89
4171 5532 7.472543 GCAAAATGAGTCAATACTTCCGTATT 58.527 34.615 0.00 0.00 44.92 1.89
4320 5682 1.604278 GGCCTGTTCTGAACACAAGAC 59.396 52.381 18.69 9.43 36.25 3.01
4532 6003 1.460689 AGGGTCCGACCACTTTGGA 60.461 57.895 19.43 0.00 40.96 3.53
4591 6062 7.554835 AGGATAACTATGTACAAAATTTCCGCA 59.445 33.333 0.00 0.00 0.00 5.69
4650 6121 2.125713 CCACACGATGTAGCGGCA 60.126 61.111 1.45 0.00 35.12 5.69
4652 6123 2.890474 GCCCACACGATGTAGCGG 60.890 66.667 0.00 0.00 35.12 5.52
4694 6165 4.952335 CCTAACTGAGAAATTCTGGGCATT 59.048 41.667 0.00 0.00 0.00 3.56
4695 6166 4.530875 CCTAACTGAGAAATTCTGGGCAT 58.469 43.478 0.00 0.00 0.00 4.40
5109 6580 3.762288 GCGGGGATTAAGAAAGGAAAACT 59.238 43.478 0.00 0.00 0.00 2.66
5110 6581 3.508402 TGCGGGGATTAAGAAAGGAAAAC 59.492 43.478 0.00 0.00 0.00 2.43
5111 6582 3.768878 TGCGGGGATTAAGAAAGGAAAA 58.231 40.909 0.00 0.00 0.00 2.29
5112 6583 3.443145 TGCGGGGATTAAGAAAGGAAA 57.557 42.857 0.00 0.00 0.00 3.13
5113 6584 3.443145 TTGCGGGGATTAAGAAAGGAA 57.557 42.857 0.00 0.00 0.00 3.36
5114 6585 3.662759 ATTGCGGGGATTAAGAAAGGA 57.337 42.857 0.00 0.00 0.00 3.36
5115 6586 4.159506 TCAAATTGCGGGGATTAAGAAAGG 59.840 41.667 0.00 0.00 0.00 3.11
5116 6587 5.323371 TCAAATTGCGGGGATTAAGAAAG 57.677 39.130 0.00 0.00 0.00 2.62
5117 6588 4.159506 CCTCAAATTGCGGGGATTAAGAAA 59.840 41.667 0.00 0.00 0.00 2.52
5118 6589 3.699038 CCTCAAATTGCGGGGATTAAGAA 59.301 43.478 0.00 0.00 0.00 2.52
5119 6590 3.287222 CCTCAAATTGCGGGGATTAAGA 58.713 45.455 0.00 0.00 0.00 2.10
5120 6591 2.223805 GCCTCAAATTGCGGGGATTAAG 60.224 50.000 4.02 0.00 0.00 1.85
5121 6592 1.754226 GCCTCAAATTGCGGGGATTAA 59.246 47.619 4.02 0.00 0.00 1.40
5122 6593 1.341482 TGCCTCAAATTGCGGGGATTA 60.341 47.619 4.02 0.00 0.00 1.75
5123 6594 0.614415 TGCCTCAAATTGCGGGGATT 60.614 50.000 4.02 0.00 0.00 3.01
5124 6595 0.614415 TTGCCTCAAATTGCGGGGAT 60.614 50.000 4.02 0.00 0.00 3.85
5125 6596 1.228706 TTGCCTCAAATTGCGGGGA 60.229 52.632 4.02 0.00 0.00 4.81
5126 6597 1.216178 CTTGCCTCAAATTGCGGGG 59.784 57.895 4.02 0.26 0.00 5.73
5127 6598 0.819582 ATCTTGCCTCAAATTGCGGG 59.180 50.000 4.02 2.65 0.00 6.13
5128 6599 1.473677 TGATCTTGCCTCAAATTGCGG 59.526 47.619 0.00 0.00 0.00 5.69
5129 6600 2.421073 TCTGATCTTGCCTCAAATTGCG 59.579 45.455 0.00 0.00 0.00 4.85
5130 6601 4.421948 CTTCTGATCTTGCCTCAAATTGC 58.578 43.478 0.00 0.00 0.00 3.56
5131 6602 4.703575 TCCTTCTGATCTTGCCTCAAATTG 59.296 41.667 0.00 0.00 0.00 2.32
5132 6603 4.927049 TCCTTCTGATCTTGCCTCAAATT 58.073 39.130 0.00 0.00 0.00 1.82
5133 6604 4.581309 TCCTTCTGATCTTGCCTCAAAT 57.419 40.909 0.00 0.00 0.00 2.32
5134 6605 4.074970 GTTCCTTCTGATCTTGCCTCAAA 58.925 43.478 0.00 0.00 0.00 2.69
5135 6606 3.328931 AGTTCCTTCTGATCTTGCCTCAA 59.671 43.478 0.00 0.00 0.00 3.02
5136 6607 2.909006 AGTTCCTTCTGATCTTGCCTCA 59.091 45.455 0.00 0.00 0.00 3.86
5137 6608 3.269178 CAGTTCCTTCTGATCTTGCCTC 58.731 50.000 0.00 0.00 37.61 4.70
5138 6609 2.617532 GCAGTTCCTTCTGATCTTGCCT 60.618 50.000 0.00 0.00 37.61 4.75
5139 6610 1.742268 GCAGTTCCTTCTGATCTTGCC 59.258 52.381 0.00 0.00 37.61 4.52
5140 6611 1.396301 CGCAGTTCCTTCTGATCTTGC 59.604 52.381 0.00 0.00 37.61 4.01
5141 6612 1.396301 GCGCAGTTCCTTCTGATCTTG 59.604 52.381 0.30 0.00 37.61 3.02
5142 6613 1.731720 GCGCAGTTCCTTCTGATCTT 58.268 50.000 0.30 0.00 37.61 2.40
5143 6614 0.459237 CGCGCAGTTCCTTCTGATCT 60.459 55.000 8.75 0.00 37.61 2.75
5144 6615 0.737715 ACGCGCAGTTCCTTCTGATC 60.738 55.000 5.73 0.00 37.61 2.92
5145 6616 1.016130 CACGCGCAGTTCCTTCTGAT 61.016 55.000 5.73 0.00 37.61 2.90
5146 6617 1.664649 CACGCGCAGTTCCTTCTGA 60.665 57.895 5.73 0.00 37.61 3.27
5147 6618 2.856032 CACGCGCAGTTCCTTCTG 59.144 61.111 5.73 0.00 38.35 3.02
5148 6619 3.044305 GCACGCGCAGTTCCTTCT 61.044 61.111 5.73 0.00 38.36 2.85
5149 6620 3.345808 TGCACGCGCAGTTCCTTC 61.346 61.111 5.73 0.00 45.36 3.46
5165 6636 1.300971 CCTGTGGACAAGCACGGATG 61.301 60.000 0.00 0.00 0.00 3.51
5166 6637 1.003355 CCTGTGGACAAGCACGGAT 60.003 57.895 0.00 0.00 0.00 4.18
5167 6638 2.425592 CCTGTGGACAAGCACGGA 59.574 61.111 0.00 0.00 0.00 4.69
5168 6639 3.357079 GCCTGTGGACAAGCACGG 61.357 66.667 0.00 0.00 33.67 4.94
5169 6640 3.357079 GGCCTGTGGACAAGCACG 61.357 66.667 0.00 0.00 35.10 5.34
5170 6641 2.203337 TGGCCTGTGGACAAGCAC 60.203 61.111 3.32 0.00 38.06 4.40
5176 6647 0.462047 CGACCTAATGGCCTGTGGAC 60.462 60.000 3.32 0.77 36.63 4.02
5177 6648 0.907704 ACGACCTAATGGCCTGTGGA 60.908 55.000 3.32 0.00 36.63 4.02
5178 6649 0.744414 CACGACCTAATGGCCTGTGG 60.744 60.000 3.32 3.56 36.63 4.17
5179 6650 0.036388 ACACGACCTAATGGCCTGTG 60.036 55.000 3.32 2.58 38.31 3.66
5180 6651 0.036388 CACACGACCTAATGGCCTGT 60.036 55.000 3.32 0.00 36.63 4.00
5181 6652 1.369091 GCACACGACCTAATGGCCTG 61.369 60.000 3.32 0.00 36.63 4.85
5182 6653 1.078426 GCACACGACCTAATGGCCT 60.078 57.895 3.32 0.00 36.63 5.19
5183 6654 0.958382 TTGCACACGACCTAATGGCC 60.958 55.000 0.00 0.00 36.63 5.36
5184 6655 0.878416 TTTGCACACGACCTAATGGC 59.122 50.000 0.00 0.00 36.63 4.40
5185 6656 1.199097 GGTTTGCACACGACCTAATGG 59.801 52.381 0.00 0.00 39.83 3.16
5186 6657 2.095768 CAGGTTTGCACACGACCTAATG 60.096 50.000 9.24 0.00 41.72 1.90
5187 6658 2.151202 CAGGTTTGCACACGACCTAAT 58.849 47.619 9.24 0.00 41.72 1.73
5188 6659 1.588674 CAGGTTTGCACACGACCTAA 58.411 50.000 9.24 0.00 41.72 2.69
5189 6660 3.299050 CAGGTTTGCACACGACCTA 57.701 52.632 9.24 0.00 41.72 3.08
5190 6661 4.141144 CAGGTTTGCACACGACCT 57.859 55.556 4.81 4.81 44.39 3.85
5200 6671 2.604614 GGACGTTTTGCTAGCAGGTTTG 60.605 50.000 18.45 10.56 0.00 2.93
5201 6672 1.607148 GGACGTTTTGCTAGCAGGTTT 59.393 47.619 18.45 2.53 0.00 3.27
5202 6673 1.202770 AGGACGTTTTGCTAGCAGGTT 60.203 47.619 18.45 1.76 0.00 3.50
5203 6674 0.396811 AGGACGTTTTGCTAGCAGGT 59.603 50.000 18.45 14.14 0.00 4.00
5204 6675 0.798776 CAGGACGTTTTGCTAGCAGG 59.201 55.000 18.45 11.06 0.00 4.85
5205 6676 0.798776 CCAGGACGTTTTGCTAGCAG 59.201 55.000 18.45 8.87 0.00 4.24
5206 6677 0.107831 ACCAGGACGTTTTGCTAGCA 59.892 50.000 14.93 14.93 0.00 3.49
5207 6678 0.796927 GACCAGGACGTTTTGCTAGC 59.203 55.000 8.10 8.10 0.00 3.42
5208 6679 1.068474 CGACCAGGACGTTTTGCTAG 58.932 55.000 2.81 0.00 0.00 3.42
5209 6680 0.320073 CCGACCAGGACGTTTTGCTA 60.320 55.000 10.51 0.00 45.00 3.49
5210 6681 1.597027 CCGACCAGGACGTTTTGCT 60.597 57.895 10.51 0.00 45.00 3.91
5211 6682 0.600782 TACCGACCAGGACGTTTTGC 60.601 55.000 10.51 0.00 45.00 3.68
5212 6683 1.269936 ACTACCGACCAGGACGTTTTG 60.270 52.381 10.51 1.13 45.00 2.44
5213 6684 1.043022 ACTACCGACCAGGACGTTTT 58.957 50.000 10.51 0.00 45.00 2.43
5214 6685 0.316204 CACTACCGACCAGGACGTTT 59.684 55.000 10.51 0.00 45.00 3.60
5215 6686 0.825010 ACACTACCGACCAGGACGTT 60.825 55.000 10.51 0.00 45.00 3.99
5216 6687 0.825010 AACACTACCGACCAGGACGT 60.825 55.000 10.51 0.00 45.00 4.34
5217 6688 0.316204 AAACACTACCGACCAGGACG 59.684 55.000 4.11 4.11 45.00 4.79
5218 6689 2.538512 AAAACACTACCGACCAGGAC 57.461 50.000 0.00 0.00 45.00 3.85
5235 6706 3.831323 TCTCTGGGTCTCATTGCAAAAA 58.169 40.909 1.71 0.00 0.00 1.94
5236 6707 3.507162 TCTCTGGGTCTCATTGCAAAA 57.493 42.857 1.71 0.00 0.00 2.44
5237 6708 3.507162 TTCTCTGGGTCTCATTGCAAA 57.493 42.857 1.71 0.00 0.00 3.68
5238 6709 3.726557 ATTCTCTGGGTCTCATTGCAA 57.273 42.857 0.00 0.00 0.00 4.08
5239 6710 3.519107 TGTATTCTCTGGGTCTCATTGCA 59.481 43.478 0.00 0.00 0.00 4.08
5240 6711 4.125703 CTGTATTCTCTGGGTCTCATTGC 58.874 47.826 0.00 0.00 0.00 3.56
5241 6712 5.350504 ACTGTATTCTCTGGGTCTCATTG 57.649 43.478 0.00 0.00 0.00 2.82
5242 6713 7.682787 ATTACTGTATTCTCTGGGTCTCATT 57.317 36.000 0.00 0.00 0.00 2.57
5243 6714 8.964533 ATATTACTGTATTCTCTGGGTCTCAT 57.035 34.615 0.00 0.00 0.00 2.90
5244 6715 8.642432 CAATATTACTGTATTCTCTGGGTCTCA 58.358 37.037 0.00 0.00 0.00 3.27
5245 6716 8.861086 TCAATATTACTGTATTCTCTGGGTCTC 58.139 37.037 0.00 0.00 0.00 3.36
5246 6717 8.643324 GTCAATATTACTGTATTCTCTGGGTCT 58.357 37.037 0.00 0.00 0.00 3.85
5247 6718 7.595502 CGTCAATATTACTGTATTCTCTGGGTC 59.404 40.741 0.00 0.00 0.00 4.46
5248 6719 7.287005 TCGTCAATATTACTGTATTCTCTGGGT 59.713 37.037 0.00 0.00 0.00 4.51
5249 6720 7.658261 TCGTCAATATTACTGTATTCTCTGGG 58.342 38.462 0.00 0.00 0.00 4.45
5250 6721 8.568794 TCTCGTCAATATTACTGTATTCTCTGG 58.431 37.037 0.00 0.00 0.00 3.86
5253 6724 8.855279 GCATCTCGTCAATATTACTGTATTCTC 58.145 37.037 0.00 0.00 0.00 2.87
5254 6725 7.815068 GGCATCTCGTCAATATTACTGTATTCT 59.185 37.037 0.00 0.00 0.00 2.40
5255 6726 7.063544 GGGCATCTCGTCAATATTACTGTATTC 59.936 40.741 0.00 0.00 0.00 1.75
5256 6727 6.874134 GGGCATCTCGTCAATATTACTGTATT 59.126 38.462 0.00 0.00 0.00 1.89
5257 6728 6.211584 AGGGCATCTCGTCAATATTACTGTAT 59.788 38.462 0.00 0.00 0.00 2.29
5258 6729 5.538813 AGGGCATCTCGTCAATATTACTGTA 59.461 40.000 0.00 0.00 0.00 2.74
5259 6730 4.345257 AGGGCATCTCGTCAATATTACTGT 59.655 41.667 0.00 0.00 0.00 3.55
5260 6731 4.887748 AGGGCATCTCGTCAATATTACTG 58.112 43.478 0.00 0.00 0.00 2.74
5261 6732 5.305644 AGAAGGGCATCTCGTCAATATTACT 59.694 40.000 0.00 0.00 0.00 2.24
5262 6733 5.542779 AGAAGGGCATCTCGTCAATATTAC 58.457 41.667 0.00 0.00 0.00 1.89
5263 6734 5.784177 GAGAAGGGCATCTCGTCAATATTA 58.216 41.667 4.12 0.00 36.77 0.98
5264 6735 4.636249 GAGAAGGGCATCTCGTCAATATT 58.364 43.478 4.12 0.00 36.77 1.28
5265 6736 4.264460 GAGAAGGGCATCTCGTCAATAT 57.736 45.455 4.12 0.00 36.77 1.28
5266 6737 3.735237 GAGAAGGGCATCTCGTCAATA 57.265 47.619 4.12 0.00 36.77 1.90
5267 6738 2.611225 GAGAAGGGCATCTCGTCAAT 57.389 50.000 4.12 0.00 36.77 2.57
5273 6744 3.902881 TTCAGAAGAGAAGGGCATCTC 57.097 47.619 10.57 10.57 45.06 2.75
5274 6745 4.858965 ATTTCAGAAGAGAAGGGCATCT 57.141 40.909 0.00 0.00 0.00 2.90
5275 6746 5.184671 ACAAATTTCAGAAGAGAAGGGCATC 59.815 40.000 0.00 0.00 0.00 3.91
5276 6747 5.047519 CACAAATTTCAGAAGAGAAGGGCAT 60.048 40.000 0.00 0.00 0.00 4.40
5277 6748 4.279169 CACAAATTTCAGAAGAGAAGGGCA 59.721 41.667 0.00 0.00 0.00 5.36
5278 6749 4.520492 TCACAAATTTCAGAAGAGAAGGGC 59.480 41.667 0.00 0.00 0.00 5.19
5279 6750 6.639632 TTCACAAATTTCAGAAGAGAAGGG 57.360 37.500 0.00 0.00 0.00 3.95
5280 6751 8.193438 AGTTTTCACAAATTTCAGAAGAGAAGG 58.807 33.333 0.00 0.00 0.00 3.46
5281 6752 9.578439 AAGTTTTCACAAATTTCAGAAGAGAAG 57.422 29.630 0.00 0.00 0.00 2.85
5282 6753 9.927668 AAAGTTTTCACAAATTTCAGAAGAGAA 57.072 25.926 0.00 0.00 0.00 2.87
5283 6754 9.927668 AAAAGTTTTCACAAATTTCAGAAGAGA 57.072 25.926 0.00 0.00 0.00 3.10
5286 6757 9.545611 CCAAAAAGTTTTCACAAATTTCAGAAG 57.454 29.630 0.32 0.00 0.00 2.85
5287 6758 9.277783 TCCAAAAAGTTTTCACAAATTTCAGAA 57.722 25.926 0.32 0.00 0.00 3.02
5288 6759 8.716909 GTCCAAAAAGTTTTCACAAATTTCAGA 58.283 29.630 0.32 0.00 0.00 3.27
5289 6760 7.962373 GGTCCAAAAAGTTTTCACAAATTTCAG 59.038 33.333 0.32 0.00 0.00 3.02
5290 6761 7.663493 AGGTCCAAAAAGTTTTCACAAATTTCA 59.337 29.630 0.32 0.00 0.00 2.69
5291 6762 7.962373 CAGGTCCAAAAAGTTTTCACAAATTTC 59.038 33.333 0.32 0.00 0.00 2.17
5292 6763 7.094420 CCAGGTCCAAAAAGTTTTCACAAATTT 60.094 33.333 0.32 0.00 0.00 1.82
5293 6764 6.374053 CCAGGTCCAAAAAGTTTTCACAAATT 59.626 34.615 0.32 0.00 0.00 1.82
5294 6765 5.879777 CCAGGTCCAAAAAGTTTTCACAAAT 59.120 36.000 0.32 0.00 0.00 2.32
5295 6766 5.012148 TCCAGGTCCAAAAAGTTTTCACAAA 59.988 36.000 0.32 0.00 0.00 2.83
5296 6767 4.528596 TCCAGGTCCAAAAAGTTTTCACAA 59.471 37.500 0.32 0.00 0.00 3.33
5297 6768 4.090090 TCCAGGTCCAAAAAGTTTTCACA 58.910 39.130 0.32 0.00 0.00 3.58
5298 6769 4.441495 CCTCCAGGTCCAAAAAGTTTTCAC 60.441 45.833 0.32 0.00 0.00 3.18
5299 6770 3.704061 CCTCCAGGTCCAAAAAGTTTTCA 59.296 43.478 0.32 0.00 0.00 2.69
5300 6771 3.069586 CCCTCCAGGTCCAAAAAGTTTTC 59.930 47.826 0.32 0.00 0.00 2.29
5301 6772 3.038280 CCCTCCAGGTCCAAAAAGTTTT 58.962 45.455 0.00 0.00 0.00 2.43
5302 6773 2.246327 TCCCTCCAGGTCCAAAAAGTTT 59.754 45.455 0.00 0.00 36.75 2.66
5303 6774 1.856920 TCCCTCCAGGTCCAAAAAGTT 59.143 47.619 0.00 0.00 36.75 2.66
5304 6775 1.529744 TCCCTCCAGGTCCAAAAAGT 58.470 50.000 0.00 0.00 36.75 2.66
5305 6776 2.907458 ATCCCTCCAGGTCCAAAAAG 57.093 50.000 0.00 0.00 36.75 2.27
5306 6777 3.563479 GCTTATCCCTCCAGGTCCAAAAA 60.563 47.826 0.00 0.00 36.75 1.94
5307 6778 2.025321 GCTTATCCCTCCAGGTCCAAAA 60.025 50.000 0.00 0.00 36.75 2.44
5308 6779 1.564348 GCTTATCCCTCCAGGTCCAAA 59.436 52.381 0.00 0.00 36.75 3.28
5309 6780 1.213296 GCTTATCCCTCCAGGTCCAA 58.787 55.000 0.00 0.00 36.75 3.53
5310 6781 0.343372 AGCTTATCCCTCCAGGTCCA 59.657 55.000 0.00 0.00 36.75 4.02
5311 6782 2.158295 TCTAGCTTATCCCTCCAGGTCC 60.158 54.545 0.00 0.00 36.75 4.46
5312 6783 3.161866 CTCTAGCTTATCCCTCCAGGTC 58.838 54.545 0.00 0.00 36.75 3.85
5313 6784 2.758295 GCTCTAGCTTATCCCTCCAGGT 60.758 54.545 0.00 0.00 38.21 4.00
5314 6785 1.899142 GCTCTAGCTTATCCCTCCAGG 59.101 57.143 0.00 0.00 38.21 4.45
5330 6801 2.295349 CACATTCTTGTGCCAAAGCTCT 59.705 45.455 0.00 0.00 46.20 4.09
5331 6802 2.669364 CACATTCTTGTGCCAAAGCTC 58.331 47.619 0.00 0.00 46.20 4.09
5332 6803 2.806608 CACATTCTTGTGCCAAAGCT 57.193 45.000 0.00 0.00 46.20 3.74
5341 6812 7.117667 GTCCAAAAAGTTTTCACACATTCTTGT 59.882 33.333 0.32 0.00 36.15 3.16
5352 6823 3.132111 GCTCCAGGTCCAAAAAGTTTTCA 59.868 43.478 0.32 0.00 0.00 2.69
5353 6824 3.717707 GCTCCAGGTCCAAAAAGTTTTC 58.282 45.455 0.32 0.00 0.00 2.29
5361 6832 1.118965 TCACTCGCTCCAGGTCCAAA 61.119 55.000 0.00 0.00 0.00 3.28
5362 6833 1.533033 TCACTCGCTCCAGGTCCAA 60.533 57.895 0.00 0.00 0.00 3.53
5378 6849 1.005332 CCTCTCTCCACTGGACTCTCA 59.995 57.143 0.00 0.00 0.00 3.27
5409 6880 2.156891 CACAAGTAAATCGTCCACACCG 59.843 50.000 0.00 0.00 0.00 4.94
5417 6888 3.576982 TCCTCTGTCCACAAGTAAATCGT 59.423 43.478 0.00 0.00 0.00 3.73
5424 6895 3.708631 CCATATCTCCTCTGTCCACAAGT 59.291 47.826 0.00 0.00 0.00 3.16
5443 6914 1.277580 AAGCACTAGCCCAGCTCCAT 61.278 55.000 0.00 0.00 43.56 3.41
5514 6985 0.042731 TTTCCCAACAACCAACCCCA 59.957 50.000 0.00 0.00 0.00 4.96
5517 6988 3.897141 TCTTTTTCCCAACAACCAACC 57.103 42.857 0.00 0.00 0.00 3.77
5518 6989 4.188462 CCTTCTTTTTCCCAACAACCAAC 58.812 43.478 0.00 0.00 0.00 3.77
5519 6990 3.841255 ACCTTCTTTTTCCCAACAACCAA 59.159 39.130 0.00 0.00 0.00 3.67
5520 6991 3.445987 ACCTTCTTTTTCCCAACAACCA 58.554 40.909 0.00 0.00 0.00 3.67
5521 6992 4.439057 GAACCTTCTTTTTCCCAACAACC 58.561 43.478 0.00 0.00 0.00 3.77
5522 6993 4.109766 CGAACCTTCTTTTTCCCAACAAC 58.890 43.478 0.00 0.00 0.00 3.32
5523 6994 3.131400 CCGAACCTTCTTTTTCCCAACAA 59.869 43.478 0.00 0.00 0.00 2.83
5524 6995 2.691011 CCGAACCTTCTTTTTCCCAACA 59.309 45.455 0.00 0.00 0.00 3.33
5525 6996 2.035449 CCCGAACCTTCTTTTTCCCAAC 59.965 50.000 0.00 0.00 0.00 3.77
5526 6997 2.312390 CCCGAACCTTCTTTTTCCCAA 58.688 47.619 0.00 0.00 0.00 4.12
5527 6998 1.479757 CCCCGAACCTTCTTTTTCCCA 60.480 52.381 0.00 0.00 0.00 4.37
5528 6999 1.254026 CCCCGAACCTTCTTTTTCCC 58.746 55.000 0.00 0.00 0.00 3.97
5529 7000 1.991121 ACCCCGAACCTTCTTTTTCC 58.009 50.000 0.00 0.00 0.00 3.13
5530 7001 2.035449 CCAACCCCGAACCTTCTTTTTC 59.965 50.000 0.00 0.00 0.00 2.29
5531 7002 2.036387 CCAACCCCGAACCTTCTTTTT 58.964 47.619 0.00 0.00 0.00 1.94
5532 7003 1.063492 ACCAACCCCGAACCTTCTTTT 60.063 47.619 0.00 0.00 0.00 2.27
5533 7004 0.554305 ACCAACCCCGAACCTTCTTT 59.446 50.000 0.00 0.00 0.00 2.52
5534 7005 0.554305 AACCAACCCCGAACCTTCTT 59.446 50.000 0.00 0.00 0.00 2.52
5535 7006 0.179001 CAACCAACCCCGAACCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
5536 7007 0.466739 ACAACCAACCCCGAACCTTC 60.467 55.000 0.00 0.00 0.00 3.46
5537 7008 0.032912 AACAACCAACCCCGAACCTT 60.033 50.000 0.00 0.00 0.00 3.50
5538 7009 0.753848 CAACAACCAACCCCGAACCT 60.754 55.000 0.00 0.00 0.00 3.50
5539 7010 1.737201 CAACAACCAACCCCGAACC 59.263 57.895 0.00 0.00 0.00 3.62
5540 7011 1.737201 CCAACAACCAACCCCGAAC 59.263 57.895 0.00 0.00 0.00 3.95
5541 7012 1.455959 CCCAACAACCAACCCCGAA 60.456 57.895 0.00 0.00 0.00 4.30
5542 7013 1.934459 TTCCCAACAACCAACCCCGA 61.934 55.000 0.00 0.00 0.00 5.14
5543 7014 1.043673 TTTCCCAACAACCAACCCCG 61.044 55.000 0.00 0.00 0.00 5.73
5544 7015 0.756294 CTTTCCCAACAACCAACCCC 59.244 55.000 0.00 0.00 0.00 4.95
5545 7016 1.686587 CTCTTTCCCAACAACCAACCC 59.313 52.381 0.00 0.00 0.00 4.11
5686 7157 0.167908 CCTAGCAGCTCTATCGCTCG 59.832 60.000 0.00 0.00 38.41 5.03
5730 7226 1.981254 CAACATTAAGCCCAACAGCG 58.019 50.000 0.00 0.00 38.01 5.18
6185 7776 7.649057 AGTTCTTAAAATAGCACAGTTCAACC 58.351 34.615 0.00 0.00 0.00 3.77
6230 7821 5.779771 AGGGCTAAAGAATTCACATTTTCCA 59.220 36.000 8.44 0.00 0.00 3.53
6321 7913 7.119387 TCACTCAGATCTATAAAGGACAGTCA 58.881 38.462 2.17 0.00 0.00 3.41
6514 9411 2.171725 CGCTGCCGCTTAGTTACCC 61.172 63.158 0.00 0.00 0.00 3.69
6610 9507 3.821600 ACACTACACACTGGTACTCTGAG 59.178 47.826 2.45 2.45 0.00 3.35
6767 9668 9.371136 ACTGTACATGTATCAAGTGACAAATAG 57.629 33.333 9.18 0.00 0.00 1.73
6888 9789 3.299050 CAGGTTTGCACACGACCTA 57.701 52.632 9.24 0.00 41.72 3.08
6915 9816 0.825010 AACACTACCGACCAGGACGT 60.825 55.000 10.51 0.00 45.00 4.34
6937 9838 3.726557 ATTCTCTGGGTCTCATTGCAA 57.273 42.857 0.00 0.00 0.00 4.08
6966 9868 2.611225 GAGAAGGGCATCTCGTCAAT 57.389 50.000 4.12 0.00 36.77 2.57
7037 9940 2.875296 TGAATCAAACCAGGTTCCCAG 58.125 47.619 4.93 0.00 0.00 4.45
7073 9976 7.502895 TGCAGGGATACAAAACAAGTAGTAAAA 59.497 33.333 0.00 0.00 39.74 1.52
7074 9977 6.999272 TGCAGGGATACAAAACAAGTAGTAAA 59.001 34.615 0.00 0.00 39.74 2.01
7131 10034 5.862323 GCCATGCATCAACATTATCTGAATC 59.138 40.000 0.00 0.00 0.00 2.52
7165 10068 6.373216 CCAATTTAGATGGTTAACTCCGTGAA 59.627 38.462 5.42 0.00 33.08 3.18
7198 10101 7.498900 TGATGACACTGAAAAGATACACAAAGT 59.501 33.333 0.00 0.00 0.00 2.66
7199 10102 7.800380 GTGATGACACTGAAAAGATACACAAAG 59.200 37.037 0.00 0.00 42.99 2.77
7243 10147 2.110213 TGCAGTGACAACCGGGAC 59.890 61.111 6.32 0.00 0.00 4.46
7366 10271 2.094675 ACAAGTGAAGGGTATGCATGC 58.905 47.619 11.82 11.82 0.00 4.06
7367 10272 4.789012 AAACAAGTGAAGGGTATGCATG 57.211 40.909 10.16 0.00 0.00 4.06
7399 10305 4.036734 TCACACTGAACCAAGAAATGAAGC 59.963 41.667 0.00 0.00 0.00 3.86
7400 10306 5.756195 TCACACTGAACCAAGAAATGAAG 57.244 39.130 0.00 0.00 0.00 3.02
7401 10307 6.506147 CATTCACACTGAACCAAGAAATGAA 58.494 36.000 0.00 0.00 39.45 2.57
7402 10308 5.507817 GCATTCACACTGAACCAAGAAATGA 60.508 40.000 0.00 0.00 39.45 2.57
7403 10309 4.682860 GCATTCACACTGAACCAAGAAATG 59.317 41.667 0.00 0.00 39.45 2.32
7404 10310 4.586001 AGCATTCACACTGAACCAAGAAAT 59.414 37.500 0.00 0.00 39.45 2.17
7405 10311 3.953612 AGCATTCACACTGAACCAAGAAA 59.046 39.130 0.00 0.00 39.45 2.52
7406 10312 3.554934 AGCATTCACACTGAACCAAGAA 58.445 40.909 0.00 0.00 39.45 2.52
7407 10313 3.141398 GAGCATTCACACTGAACCAAGA 58.859 45.455 0.00 0.00 39.45 3.02
7408 10314 2.096069 CGAGCATTCACACTGAACCAAG 60.096 50.000 0.00 0.00 39.45 3.61
7409 10315 1.872952 CGAGCATTCACACTGAACCAA 59.127 47.619 0.00 0.00 39.45 3.67
7410 10316 1.202639 ACGAGCATTCACACTGAACCA 60.203 47.619 0.00 0.00 39.45 3.67
7411 10317 1.461127 GACGAGCATTCACACTGAACC 59.539 52.381 0.00 0.00 39.45 3.62
7415 10321 1.458445 CTGTGACGAGCATTCACACTG 59.542 52.381 10.12 0.00 46.64 3.66
7420 10326 3.193479 ACTGTATCTGTGACGAGCATTCA 59.807 43.478 0.00 0.00 0.00 2.57
7438 10350 0.530650 CAGCAGTTGACGTGGACTGT 60.531 55.000 21.97 11.13 43.94 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.