Multiple sequence alignment - TraesCS2D01G399100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G399100 chr2D 100.000 2564 0 0 1 2564 512047816 512050379 0.000000e+00 4735
1 TraesCS2D01G399100 chr2D 91.105 371 21 4 2203 2564 187061000 187061367 2.290000e-135 492
2 TraesCS2D01G399100 chr2D 90.761 368 26 4 2205 2564 651005420 651005787 3.840000e-133 484
3 TraesCS2D01G399100 chr2B 91.900 1642 77 23 578 2206 601356044 601357642 0.000000e+00 2244
4 TraesCS2D01G399100 chr2B 89.599 548 37 11 9 543 601355191 601355731 0.000000e+00 678
5 TraesCS2D01G399100 chr2A 89.073 1208 67 19 1029 2206 655278833 655280005 0.000000e+00 1439
6 TraesCS2D01G399100 chr2A 91.848 368 26 4 176 543 655277991 655278354 6.330000e-141 510
7 TraesCS2D01G399100 chr2A 92.430 251 15 2 578 824 655278421 655278671 3.140000e-94 355
8 TraesCS2D01G399100 chr2A 82.653 294 33 8 666 942 655278540 655278832 7.090000e-61 244
9 TraesCS2D01G399100 chr2A 83.069 189 15 7 1 176 655276176 655276360 3.420000e-34 156
10 TraesCS2D01G399100 chr1D 92.098 367 23 3 2204 2564 208433035 208432669 1.760000e-141 512
11 TraesCS2D01G399100 chr7D 90.489 368 24 7 2205 2564 536607111 536606747 2.310000e-130 475
12 TraesCS2D01G399100 chr7D 88.710 372 34 5 2201 2564 68459854 68459483 5.030000e-122 448
13 TraesCS2D01G399100 chr7D 89.256 363 30 6 2207 2564 156859866 156859508 1.810000e-121 446
14 TraesCS2D01G399100 chr7D 88.525 366 34 7 2203 2564 80958306 80958667 1.090000e-118 436
15 TraesCS2D01G399100 chr5B 89.402 368 27 9 2207 2564 558715544 558715909 1.080000e-123 453
16 TraesCS2D01G399100 chr6D 89.256 363 29 9 2207 2564 43512401 43512758 1.810000e-121 446


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G399100 chr2D 512047816 512050379 2563 False 4735.0 4735 100.0000 1 2564 1 chr2D.!!$F2 2563
1 TraesCS2D01G399100 chr2B 601355191 601357642 2451 False 1461.0 2244 90.7495 9 2206 2 chr2B.!!$F1 2197
2 TraesCS2D01G399100 chr2A 655276176 655280005 3829 False 540.8 1439 87.8146 1 2206 5 chr2A.!!$F1 2205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 182 0.391130 GCTACCACGTCTTGCCATCA 60.391 55.0 0.0 0.0 0.00 3.07 F
1004 3070 0.378257 GCGTACACATGCTTGATGGG 59.622 55.0 6.6 0.0 41.84 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 3412 0.038744 AACAGTTGGCTGGAGGGATG 59.961 55.0 0.00 0.0 46.62 3.51 R
2273 4377 0.099791 ACAAAAAGGTCAACCGCGTG 59.900 50.0 4.92 0.0 42.08 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 122 2.137177 TTTAGCCACCACCTCTGCCC 62.137 60.000 0.00 0.00 0.00 5.36
110 123 3.863114 TAGCCACCACCTCTGCCCA 62.863 63.158 0.00 0.00 0.00 5.36
111 124 4.284550 GCCACCACCTCTGCCCAA 62.285 66.667 0.00 0.00 0.00 4.12
112 125 2.765969 CCACCACCTCTGCCCAAT 59.234 61.111 0.00 0.00 0.00 3.16
128 141 7.000472 TCTGCCCAATAATCTTCTTCCATAAG 59.000 38.462 0.00 0.00 0.00 1.73
130 143 5.772169 GCCCAATAATCTTCTTCCATAAGCT 59.228 40.000 0.00 0.00 32.36 3.74
131 144 6.266330 GCCCAATAATCTTCTTCCATAAGCTT 59.734 38.462 3.48 3.48 32.36 3.74
139 152 9.466497 AATCTTCTTCCATAAGCTTTTGTCATA 57.534 29.630 14.65 0.00 32.36 2.15
150 163 5.377478 AGCTTTTGTCATATAAGGGCTACC 58.623 41.667 0.00 0.00 0.00 3.18
156 174 3.573110 GTCATATAAGGGCTACCACGTCT 59.427 47.826 0.00 0.00 40.13 4.18
164 182 0.391130 GCTACCACGTCTTGCCATCA 60.391 55.000 0.00 0.00 0.00 3.07
209 1858 2.640184 GGGAGATGGTTTTACCCTTCG 58.360 52.381 0.00 0.00 37.50 3.79
239 1888 2.747446 CCTTCACCACAAATTCCCTACG 59.253 50.000 0.00 0.00 0.00 3.51
280 1929 2.684881 GCAACCATGAATCTCCATCGTT 59.315 45.455 0.00 0.00 29.97 3.85
288 1937 2.732412 ATCTCCATCGTTATCGGCAG 57.268 50.000 0.00 0.00 37.69 4.85
335 1984 0.535102 CCAACTTGGTTCAGGCTCGT 60.535 55.000 0.00 0.00 31.35 4.18
341 1990 0.892755 TGGTTCAGGCTCGTATTCGT 59.107 50.000 0.00 0.00 38.33 3.85
346 1995 0.866061 CAGGCTCGTATTCGTCACCG 60.866 60.000 0.00 0.00 38.33 4.94
422 2071 8.374743 ACTGTATTTTCTAAAATTTGGCCACAT 58.625 29.630 3.88 0.00 39.24 3.21
498 2147 0.717224 CATGCTTTGGCGAATGTTGC 59.283 50.000 0.00 0.00 42.25 4.17
556 2249 5.582665 TGTACACAAAAGCCCAATCAAAAAC 59.417 36.000 0.00 0.00 0.00 2.43
560 2499 2.549064 AAGCCCAATCAAAAACTGCC 57.451 45.000 0.00 0.00 0.00 4.85
561 2500 1.422531 AGCCCAATCAAAAACTGCCA 58.577 45.000 0.00 0.00 0.00 4.92
563 2502 1.877680 GCCCAATCAAAAACTGCCACC 60.878 52.381 0.00 0.00 0.00 4.61
564 2503 1.693606 CCCAATCAAAAACTGCCACCT 59.306 47.619 0.00 0.00 0.00 4.00
565 2504 2.289010 CCCAATCAAAAACTGCCACCTC 60.289 50.000 0.00 0.00 0.00 3.85
566 2505 2.629617 CCAATCAAAAACTGCCACCTCT 59.370 45.455 0.00 0.00 0.00 3.69
567 2506 3.826157 CCAATCAAAAACTGCCACCTCTA 59.174 43.478 0.00 0.00 0.00 2.43
568 2507 4.280677 CCAATCAAAAACTGCCACCTCTAA 59.719 41.667 0.00 0.00 0.00 2.10
569 2508 5.222631 CAATCAAAAACTGCCACCTCTAAC 58.777 41.667 0.00 0.00 0.00 2.34
570 2509 3.892284 TCAAAAACTGCCACCTCTAACA 58.108 40.909 0.00 0.00 0.00 2.41
571 2510 4.274147 TCAAAAACTGCCACCTCTAACAA 58.726 39.130 0.00 0.00 0.00 2.83
572 2511 4.097286 TCAAAAACTGCCACCTCTAACAAC 59.903 41.667 0.00 0.00 0.00 3.32
573 2512 2.271944 AACTGCCACCTCTAACAACC 57.728 50.000 0.00 0.00 0.00 3.77
574 2513 1.136828 ACTGCCACCTCTAACAACCA 58.863 50.000 0.00 0.00 0.00 3.67
575 2514 1.705186 ACTGCCACCTCTAACAACCAT 59.295 47.619 0.00 0.00 0.00 3.55
576 2515 2.086869 CTGCCACCTCTAACAACCATG 58.913 52.381 0.00 0.00 0.00 3.66
589 2528 2.955660 ACAACCATGTAACAACCCTGTG 59.044 45.455 0.00 0.00 38.24 3.66
597 2536 5.304686 TGTAACAACCCTGTGAAGATTCT 57.695 39.130 0.00 0.00 35.37 2.40
608 2547 5.276461 TGTGAAGATTCTGTGTGTGTAGT 57.724 39.130 0.00 0.00 0.00 2.73
654 2593 1.536940 TTGTGTGATGCCTCATGGTG 58.463 50.000 0.00 0.00 32.98 4.17
661 2600 0.682209 ATGCCTCATGGTGAACAGGC 60.682 55.000 12.72 12.72 36.22 4.85
675 2614 1.377725 CAGGCCACCACTCACCATC 60.378 63.158 5.01 0.00 0.00 3.51
697 2636 7.201821 CCATCCAACTTTTCTTTTGAGTGTACT 60.202 37.037 0.00 0.00 0.00 2.73
747 2689 5.070685 ACTTACCATCCAAGTCTTTTCCAC 58.929 41.667 0.00 0.00 30.36 4.02
880 2866 6.992063 TTGAGAGAAACTTCATTCCATAGC 57.008 37.500 0.00 0.00 0.00 2.97
942 3008 3.702048 GACAGCACTACCGGCCCA 61.702 66.667 0.00 0.00 0.00 5.36
943 3009 3.246112 ACAGCACTACCGGCCCAA 61.246 61.111 0.00 0.00 0.00 4.12
944 3010 2.436646 CAGCACTACCGGCCCAAG 60.437 66.667 0.00 0.00 0.00 3.61
945 3011 4.410400 AGCACTACCGGCCCAAGC 62.410 66.667 0.00 0.00 38.76 4.01
955 3021 2.361104 GCCCAAGCCATGACCGAA 60.361 61.111 0.00 0.00 0.00 4.30
956 3022 1.754234 GCCCAAGCCATGACCGAAT 60.754 57.895 0.00 0.00 0.00 3.34
957 3023 1.322538 GCCCAAGCCATGACCGAATT 61.323 55.000 0.00 0.00 0.00 2.17
958 3024 0.740737 CCCAAGCCATGACCGAATTC 59.259 55.000 0.00 0.00 0.00 2.17
959 3025 0.740737 CCAAGCCATGACCGAATTCC 59.259 55.000 0.00 0.00 0.00 3.01
960 3026 1.683011 CCAAGCCATGACCGAATTCCT 60.683 52.381 0.00 0.00 0.00 3.36
961 3027 1.672881 CAAGCCATGACCGAATTCCTC 59.327 52.381 0.00 0.00 0.00 3.71
962 3028 1.207791 AGCCATGACCGAATTCCTCT 58.792 50.000 0.00 0.00 0.00 3.69
963 3029 2.398588 AGCCATGACCGAATTCCTCTA 58.601 47.619 0.00 0.00 0.00 2.43
964 3030 2.771943 AGCCATGACCGAATTCCTCTAA 59.228 45.455 0.00 0.00 0.00 2.10
965 3031 3.199946 AGCCATGACCGAATTCCTCTAAA 59.800 43.478 0.00 0.00 0.00 1.85
966 3032 3.945285 GCCATGACCGAATTCCTCTAAAA 59.055 43.478 0.00 0.00 0.00 1.52
967 3033 4.580580 GCCATGACCGAATTCCTCTAAAAT 59.419 41.667 0.00 0.00 0.00 1.82
968 3034 5.506317 GCCATGACCGAATTCCTCTAAAATG 60.506 44.000 0.00 0.00 0.00 2.32
969 3035 5.009010 CCATGACCGAATTCCTCTAAAATGG 59.991 44.000 0.00 1.52 0.00 3.16
970 3036 5.429681 TGACCGAATTCCTCTAAAATGGA 57.570 39.130 0.00 0.00 0.00 3.41
971 3037 5.811190 TGACCGAATTCCTCTAAAATGGAA 58.189 37.500 0.00 0.00 45.11 3.53
972 3038 6.242396 TGACCGAATTCCTCTAAAATGGAAA 58.758 36.000 0.00 0.00 44.34 3.13
973 3039 6.374333 TGACCGAATTCCTCTAAAATGGAAAG 59.626 38.462 0.00 0.00 44.34 2.62
974 3040 6.481643 ACCGAATTCCTCTAAAATGGAAAGA 58.518 36.000 0.00 0.00 44.34 2.52
975 3041 6.946009 ACCGAATTCCTCTAAAATGGAAAGAA 59.054 34.615 0.00 0.00 44.34 2.52
976 3042 7.450323 ACCGAATTCCTCTAAAATGGAAAGAAA 59.550 33.333 0.00 0.00 44.34 2.52
977 3043 8.303876 CCGAATTCCTCTAAAATGGAAAGAAAA 58.696 33.333 0.00 0.00 44.34 2.29
978 3044 9.129209 CGAATTCCTCTAAAATGGAAAGAAAAC 57.871 33.333 0.00 0.00 44.34 2.43
979 3045 9.129209 GAATTCCTCTAAAATGGAAAGAAAACG 57.871 33.333 0.00 0.00 44.34 3.60
980 3046 7.576861 TTCCTCTAAAATGGAAAGAAAACGT 57.423 32.000 0.00 0.00 39.15 3.99
981 3047 8.680039 TTCCTCTAAAATGGAAAGAAAACGTA 57.320 30.769 0.00 0.00 39.15 3.57
982 3048 8.680039 TCCTCTAAAATGGAAAGAAAACGTAA 57.320 30.769 0.00 0.00 0.00 3.18
983 3049 9.122779 TCCTCTAAAATGGAAAGAAAACGTAAA 57.877 29.630 0.00 0.00 0.00 2.01
984 3050 9.738832 CCTCTAAAATGGAAAGAAAACGTAAAA 57.261 29.630 0.00 0.00 0.00 1.52
986 3052 9.240159 TCTAAAATGGAAAGAAAACGTAAAAGC 57.760 29.630 0.00 0.00 0.00 3.51
987 3053 6.505039 AAATGGAAAGAAAACGTAAAAGCG 57.495 33.333 0.00 0.00 37.94 4.68
989 3055 5.731599 TGGAAAGAAAACGTAAAAGCGTA 57.268 34.783 0.00 0.00 45.00 4.42
990 3056 5.500825 TGGAAAGAAAACGTAAAAGCGTAC 58.499 37.500 0.00 0.00 45.00 3.67
991 3057 5.064452 TGGAAAGAAAACGTAAAAGCGTACA 59.936 36.000 0.00 0.00 45.00 2.90
992 3058 5.393452 GGAAAGAAAACGTAAAAGCGTACAC 59.607 40.000 0.00 0.00 45.00 2.90
993 3059 5.467902 AAGAAAACGTAAAAGCGTACACA 57.532 34.783 0.00 0.00 45.00 3.72
994 3060 5.662211 AGAAAACGTAAAAGCGTACACAT 57.338 34.783 0.00 0.00 45.00 3.21
995 3061 5.437263 AGAAAACGTAAAAGCGTACACATG 58.563 37.500 0.00 0.00 45.00 3.21
996 3062 2.867456 ACGTAAAAGCGTACACATGC 57.133 45.000 0.00 0.00 43.83 4.06
1003 3069 1.372582 AGCGTACACATGCTTGATGG 58.627 50.000 6.60 0.00 44.94 3.51
1004 3070 0.378257 GCGTACACATGCTTGATGGG 59.622 55.000 6.60 0.00 41.84 4.00
1005 3071 1.016627 CGTACACATGCTTGATGGGG 58.983 55.000 6.60 0.00 40.18 4.96
1006 3072 1.392589 GTACACATGCTTGATGGGGG 58.607 55.000 6.60 0.00 40.18 5.40
1007 3073 1.064758 GTACACATGCTTGATGGGGGA 60.065 52.381 6.60 0.00 40.18 4.81
1008 3074 0.409092 ACACATGCTTGATGGGGGAA 59.591 50.000 6.60 0.00 40.18 3.97
1009 3075 1.203162 ACACATGCTTGATGGGGGAAA 60.203 47.619 6.60 0.00 40.18 3.13
1010 3076 1.479323 CACATGCTTGATGGGGGAAAG 59.521 52.381 6.60 0.00 36.23 2.62
1011 3077 0.462789 CATGCTTGATGGGGGAAAGC 59.537 55.000 0.00 0.00 45.20 3.51
1012 3078 0.688749 ATGCTTGATGGGGGAAAGCC 60.689 55.000 4.34 0.00 44.53 4.35
1013 3079 2.418083 GCTTGATGGGGGAAAGCCG 61.418 63.158 0.00 0.00 40.32 5.52
1014 3080 1.754234 CTTGATGGGGGAAAGCCGG 60.754 63.158 0.00 0.00 33.83 6.13
1015 3081 3.955543 TTGATGGGGGAAAGCCGGC 62.956 63.158 21.89 21.89 33.83 6.13
1105 3171 1.181786 CCGCTCCATTAAAAGCCCAA 58.818 50.000 3.20 0.00 35.00 4.12
1126 3192 2.818274 CGCCGTACCCAAAGCTCC 60.818 66.667 0.00 0.00 0.00 4.70
1170 3236 2.917227 CCAAGGCACCAACCCACC 60.917 66.667 0.00 0.00 0.00 4.61
1171 3237 2.917227 CAAGGCACCAACCCACCC 60.917 66.667 0.00 0.00 0.00 4.61
1172 3238 4.596585 AAGGCACCAACCCACCCG 62.597 66.667 0.00 0.00 0.00 5.28
1704 3788 3.056678 CACCAGGCATGCTCAACATTAAA 60.057 43.478 18.92 0.00 36.64 1.52
1730 3814 7.283625 TGTATGCTACAGGAAAATTGTTTGT 57.716 32.000 0.00 0.00 34.06 2.83
1731 3815 7.144661 TGTATGCTACAGGAAAATTGTTTGTG 58.855 34.615 0.00 0.00 34.06 3.33
1732 3816 5.590530 TGCTACAGGAAAATTGTTTGTGT 57.409 34.783 0.00 0.00 0.00 3.72
1733 3817 5.971763 TGCTACAGGAAAATTGTTTGTGTT 58.028 33.333 0.00 0.00 0.00 3.32
1734 3818 6.402222 TGCTACAGGAAAATTGTTTGTGTTT 58.598 32.000 0.00 0.00 0.00 2.83
1735 3819 6.312426 TGCTACAGGAAAATTGTTTGTGTTTG 59.688 34.615 0.00 0.00 0.00 2.93
1776 3865 6.808212 AGCTTGTTGAATCGTCAATTTATTGG 59.192 34.615 2.85 0.00 45.38 3.16
1819 3909 5.803020 CTACAGTCTGTAGGAAAATTGGC 57.197 43.478 26.34 0.00 44.90 4.52
1941 4037 1.986757 GCTCCCTGGCTCTCAGTGA 60.987 63.158 0.00 0.00 41.83 3.41
1948 4046 1.153667 GGCTCTCAGTGAAGGCTCG 60.154 63.158 16.37 0.00 0.00 5.03
2024 4128 3.599730 GCATCTTTGCCCTAGCTTTTT 57.400 42.857 0.00 0.00 43.38 1.94
2064 4168 4.812476 TCCGGTCAAGGCGATGCG 62.812 66.667 0.00 0.00 0.00 4.73
2092 4196 4.440880 CAAACTTGTGAAGGGAATGCAAA 58.559 39.130 0.00 0.00 0.00 3.68
2140 4244 0.526954 CGGGCTCGGTGTGTGTATAC 60.527 60.000 0.00 0.00 0.00 1.47
2146 4250 4.155280 GGCTCGGTGTGTGTATACAAAAAT 59.845 41.667 7.25 0.00 38.82 1.82
2149 4253 7.225145 GGCTCGGTGTGTGTATACAAAAATATA 59.775 37.037 7.25 0.00 38.82 0.86
2183 4287 2.365582 GGGCCACGACATGATTTTACT 58.634 47.619 4.39 0.00 0.00 2.24
2190 4294 5.063944 CCACGACATGATTTTACTCTCTTGG 59.936 44.000 0.00 0.00 0.00 3.61
2217 4321 2.647529 CCGGTGGAGGCAAATTTAAC 57.352 50.000 0.00 0.00 0.00 2.01
2218 4322 1.889829 CCGGTGGAGGCAAATTTAACA 59.110 47.619 0.00 0.00 0.00 2.41
2219 4323 2.297597 CCGGTGGAGGCAAATTTAACAA 59.702 45.455 0.00 0.00 0.00 2.83
2220 4324 3.056179 CCGGTGGAGGCAAATTTAACAAT 60.056 43.478 0.00 0.00 0.00 2.71
2221 4325 4.562552 CCGGTGGAGGCAAATTTAACAATT 60.563 41.667 0.00 0.00 33.72 2.32
2222 4326 4.994217 CGGTGGAGGCAAATTTAACAATTT 59.006 37.500 0.00 0.00 42.37 1.82
2223 4327 5.468409 CGGTGGAGGCAAATTTAACAATTTT 59.532 36.000 0.00 0.00 40.09 1.82
2224 4328 6.565623 CGGTGGAGGCAAATTTAACAATTTTG 60.566 38.462 0.00 0.00 40.09 2.44
2225 4329 6.484977 GGTGGAGGCAAATTTAACAATTTTGA 59.515 34.615 9.33 0.00 40.09 2.69
2226 4330 7.351981 GTGGAGGCAAATTTAACAATTTTGAC 58.648 34.615 9.33 7.06 40.09 3.18
2227 4331 6.484977 TGGAGGCAAATTTAACAATTTTGACC 59.515 34.615 7.96 8.74 40.09 4.02
2228 4332 6.710295 GGAGGCAAATTTAACAATTTTGACCT 59.290 34.615 14.71 14.71 40.09 3.85
2229 4333 7.307930 GGAGGCAAATTTAACAATTTTGACCTG 60.308 37.037 17.20 0.68 40.09 4.00
2230 4334 6.486320 AGGCAAATTTAACAATTTTGACCTGG 59.514 34.615 14.38 0.00 40.09 4.45
2231 4335 6.293900 GGCAAATTTAACAATTTTGACCTGGG 60.294 38.462 0.00 0.00 40.09 4.45
2232 4336 6.484977 GCAAATTTAACAATTTTGACCTGGGA 59.515 34.615 0.00 0.00 40.09 4.37
2233 4337 7.519809 GCAAATTTAACAATTTTGACCTGGGAC 60.520 37.037 0.00 0.00 40.09 4.46
2234 4338 4.839668 TTAACAATTTTGACCTGGGACG 57.160 40.909 0.00 0.00 0.00 4.79
2235 4339 2.649531 ACAATTTTGACCTGGGACGA 57.350 45.000 0.00 0.00 0.00 4.20
2236 4340 2.938838 ACAATTTTGACCTGGGACGAA 58.061 42.857 0.00 0.00 0.00 3.85
2237 4341 3.292460 ACAATTTTGACCTGGGACGAAA 58.708 40.909 0.00 4.96 0.00 3.46
2238 4342 3.895041 ACAATTTTGACCTGGGACGAAAT 59.105 39.130 10.11 10.11 36.15 2.17
2239 4343 4.022329 ACAATTTTGACCTGGGACGAAATC 60.022 41.667 14.30 0.00 34.52 2.17
2240 4344 2.940994 TTTGACCTGGGACGAAATCA 57.059 45.000 0.00 0.00 0.00 2.57
2241 4345 2.940994 TTGACCTGGGACGAAATCAA 57.059 45.000 0.00 0.00 0.00 2.57
2242 4346 2.940994 TGACCTGGGACGAAATCAAA 57.059 45.000 0.00 0.00 0.00 2.69
2243 4347 3.433306 TGACCTGGGACGAAATCAAAT 57.567 42.857 0.00 0.00 0.00 2.32
2244 4348 3.343617 TGACCTGGGACGAAATCAAATC 58.656 45.455 0.00 0.00 0.00 2.17
2245 4349 3.244735 TGACCTGGGACGAAATCAAATCA 60.245 43.478 0.00 0.00 0.00 2.57
2246 4350 3.081804 ACCTGGGACGAAATCAAATCAC 58.918 45.455 0.00 0.00 0.00 3.06
2247 4351 3.081061 CCTGGGACGAAATCAAATCACA 58.919 45.455 0.00 0.00 0.00 3.58
2248 4352 3.696051 CCTGGGACGAAATCAAATCACAT 59.304 43.478 0.00 0.00 0.00 3.21
2249 4353 4.881273 CCTGGGACGAAATCAAATCACATA 59.119 41.667 0.00 0.00 0.00 2.29
2250 4354 5.356751 CCTGGGACGAAATCAAATCACATAA 59.643 40.000 0.00 0.00 0.00 1.90
2251 4355 6.039717 CCTGGGACGAAATCAAATCACATAAT 59.960 38.462 0.00 0.00 0.00 1.28
2252 4356 7.228507 CCTGGGACGAAATCAAATCACATAATA 59.771 37.037 0.00 0.00 0.00 0.98
2253 4357 8.512966 TGGGACGAAATCAAATCACATAATAA 57.487 30.769 0.00 0.00 0.00 1.40
2254 4358 8.961634 TGGGACGAAATCAAATCACATAATAAA 58.038 29.630 0.00 0.00 0.00 1.40
2255 4359 9.233232 GGGACGAAATCAAATCACATAATAAAC 57.767 33.333 0.00 0.00 0.00 2.01
2258 4362 9.289303 ACGAAATCAAATCACATAATAAACTGC 57.711 29.630 0.00 0.00 0.00 4.40
2259 4363 8.745837 CGAAATCAAATCACATAATAAACTGCC 58.254 33.333 0.00 0.00 0.00 4.85
2260 4364 8.947055 AAATCAAATCACATAATAAACTGCCC 57.053 30.769 0.00 0.00 0.00 5.36
2261 4365 6.130298 TCAAATCACATAATAAACTGCCCG 57.870 37.500 0.00 0.00 0.00 6.13
2262 4366 5.650266 TCAAATCACATAATAAACTGCCCGT 59.350 36.000 0.00 0.00 0.00 5.28
2263 4367 5.499139 AATCACATAATAAACTGCCCGTG 57.501 39.130 0.00 0.00 0.00 4.94
2264 4368 4.209307 TCACATAATAAACTGCCCGTGA 57.791 40.909 0.00 0.00 0.00 4.35
2265 4369 4.580868 TCACATAATAAACTGCCCGTGAA 58.419 39.130 0.00 0.00 0.00 3.18
2266 4370 5.004448 TCACATAATAAACTGCCCGTGAAA 58.996 37.500 0.00 0.00 0.00 2.69
2267 4371 5.092781 CACATAATAAACTGCCCGTGAAAC 58.907 41.667 0.00 0.00 0.00 2.78
2268 4372 5.007682 ACATAATAAACTGCCCGTGAAACT 58.992 37.500 0.00 0.00 31.75 2.66
2269 4373 6.092944 CACATAATAAACTGCCCGTGAAACTA 59.907 38.462 0.00 0.00 31.75 2.24
2270 4374 6.826741 ACATAATAAACTGCCCGTGAAACTAT 59.173 34.615 0.00 0.00 31.75 2.12
2271 4375 7.338449 ACATAATAAACTGCCCGTGAAACTATT 59.662 33.333 0.00 0.00 31.75 1.73
2272 4376 6.584185 AATAAACTGCCCGTGAAACTATTT 57.416 33.333 0.00 0.00 31.75 1.40
2273 4377 4.499037 AAACTGCCCGTGAAACTATTTC 57.501 40.909 0.00 0.00 40.08 2.17
2274 4378 3.134574 ACTGCCCGTGAAACTATTTCA 57.865 42.857 0.00 0.00 46.68 2.69
2282 4386 3.529634 TGAAACTATTTCACGCGGTTG 57.470 42.857 12.47 0.00 44.21 3.77
2283 4387 3.132160 TGAAACTATTTCACGCGGTTGA 58.868 40.909 12.47 2.44 44.21 3.18
2284 4388 3.059461 TGAAACTATTTCACGCGGTTGAC 60.059 43.478 12.47 2.35 44.21 3.18
2285 4389 1.435577 ACTATTTCACGCGGTTGACC 58.564 50.000 12.47 0.00 0.00 4.02
2286 4390 1.001633 ACTATTTCACGCGGTTGACCT 59.998 47.619 12.47 0.00 0.00 3.85
2287 4391 2.073816 CTATTTCACGCGGTTGACCTT 58.926 47.619 12.47 0.00 0.00 3.50
2288 4392 1.314730 ATTTCACGCGGTTGACCTTT 58.685 45.000 12.47 0.00 0.00 3.11
2289 4393 1.096416 TTTCACGCGGTTGACCTTTT 58.904 45.000 12.47 0.00 0.00 2.27
2290 4394 1.096416 TTCACGCGGTTGACCTTTTT 58.904 45.000 12.47 0.00 0.00 1.94
2291 4395 0.378962 TCACGCGGTTGACCTTTTTG 59.621 50.000 12.47 0.00 0.00 2.44
2292 4396 0.099791 CACGCGGTTGACCTTTTTGT 59.900 50.000 12.47 0.00 0.00 2.83
2293 4397 0.099791 ACGCGGTTGACCTTTTTGTG 59.900 50.000 12.47 0.00 0.00 3.33
2294 4398 0.099791 CGCGGTTGACCTTTTTGTGT 59.900 50.000 0.00 0.00 0.00 3.72
2295 4399 1.555477 GCGGTTGACCTTTTTGTGTG 58.445 50.000 0.00 0.00 0.00 3.82
2296 4400 1.801025 GCGGTTGACCTTTTTGTGTGG 60.801 52.381 0.00 0.00 0.00 4.17
2297 4401 1.801025 CGGTTGACCTTTTTGTGTGGC 60.801 52.381 0.00 0.00 0.00 5.01
2298 4402 1.555477 GTTGACCTTTTTGTGTGGCG 58.445 50.000 0.00 0.00 0.00 5.69
2299 4403 0.179124 TTGACCTTTTTGTGTGGCGC 60.179 50.000 0.00 0.00 0.00 6.53
2300 4404 1.299850 GACCTTTTTGTGTGGCGCC 60.300 57.895 22.73 22.73 0.00 6.53
2301 4405 2.028925 CCTTTTTGTGTGGCGCCC 59.971 61.111 26.77 16.24 0.00 6.13
2302 4406 2.354539 CTTTTTGTGTGGCGCCCG 60.355 61.111 26.77 0.00 0.00 6.13
2303 4407 2.829003 TTTTTGTGTGGCGCCCGA 60.829 55.556 26.77 7.30 0.00 5.14
2304 4408 2.999363 CTTTTTGTGTGGCGCCCGAC 62.999 60.000 26.77 20.63 0.00 4.79
2305 4409 4.858680 TTTGTGTGGCGCCCGACA 62.859 61.111 26.77 23.15 0.00 4.35
2327 4431 4.157120 GGCGCCACACCCTACGAT 62.157 66.667 24.80 0.00 0.00 3.73
2328 4432 2.890474 GCGCCACACCCTACGATG 60.890 66.667 0.00 0.00 0.00 3.84
2329 4433 2.890474 CGCCACACCCTACGATGC 60.890 66.667 0.00 0.00 0.00 3.91
2330 4434 2.267642 GCCACACCCTACGATGCA 59.732 61.111 0.00 0.00 0.00 3.96
2331 4435 1.815421 GCCACACCCTACGATGCAG 60.815 63.158 0.00 0.00 0.00 4.41
2332 4436 1.815421 CCACACCCTACGATGCAGC 60.815 63.158 0.00 0.00 0.00 5.25
2333 4437 2.167219 CACACCCTACGATGCAGCG 61.167 63.158 24.69 24.69 37.29 5.18
2334 4438 3.264897 CACCCTACGATGCAGCGC 61.265 66.667 26.30 0.00 33.86 5.92
2335 4439 4.530857 ACCCTACGATGCAGCGCC 62.531 66.667 26.30 0.00 33.86 6.53
2336 4440 4.227134 CCCTACGATGCAGCGCCT 62.227 66.667 26.30 8.72 33.86 5.52
2337 4441 2.728180 CCTACGATGCAGCGCCTA 59.272 61.111 26.30 9.52 33.86 3.93
2338 4442 1.372251 CCTACGATGCAGCGCCTAG 60.372 63.158 26.30 18.73 33.86 3.02
2351 4455 2.509336 CCTAGCACGGAGGCGTTG 60.509 66.667 0.00 0.00 39.27 4.10
2352 4456 3.188786 CTAGCACGGAGGCGTTGC 61.189 66.667 0.00 0.00 39.27 4.17
2353 4457 3.932580 CTAGCACGGAGGCGTTGCA 62.933 63.158 4.55 0.00 39.27 4.08
2356 4460 4.988598 CACGGAGGCGTTGCACCT 62.989 66.667 0.00 0.00 41.41 4.00
2362 4466 1.522569 AGGCGTTGCACCTCTATCC 59.477 57.895 0.00 0.00 28.76 2.59
2363 4467 1.220749 GGCGTTGCACCTCTATCCA 59.779 57.895 0.00 0.00 0.00 3.41
2364 4468 0.179045 GGCGTTGCACCTCTATCCAT 60.179 55.000 0.00 0.00 0.00 3.41
2365 4469 1.221414 GCGTTGCACCTCTATCCATC 58.779 55.000 0.00 0.00 0.00 3.51
2366 4470 1.491670 CGTTGCACCTCTATCCATCG 58.508 55.000 0.00 0.00 0.00 3.84
2367 4471 1.202417 CGTTGCACCTCTATCCATCGT 60.202 52.381 0.00 0.00 0.00 3.73
2368 4472 2.205074 GTTGCACCTCTATCCATCGTG 58.795 52.381 0.00 0.00 0.00 4.35
2369 4473 0.752658 TGCACCTCTATCCATCGTGG 59.247 55.000 0.00 0.00 39.43 4.94
2370 4474 0.601311 GCACCTCTATCCATCGTGGC 60.601 60.000 0.00 0.00 37.47 5.01
2371 4475 0.752658 CACCTCTATCCATCGTGGCA 59.247 55.000 0.00 0.00 37.47 4.92
2372 4476 1.043816 ACCTCTATCCATCGTGGCAG 58.956 55.000 0.00 0.87 37.47 4.85
2373 4477 0.320247 CCTCTATCCATCGTGGCAGC 60.320 60.000 0.00 0.00 37.47 5.25
2374 4478 0.320247 CTCTATCCATCGTGGCAGCC 60.320 60.000 3.66 3.66 37.47 4.85
2375 4479 1.302033 CTATCCATCGTGGCAGCCC 60.302 63.158 9.64 0.00 37.47 5.19
2376 4480 2.738213 CTATCCATCGTGGCAGCCCC 62.738 65.000 9.64 0.00 37.47 5.80
2379 4483 4.100084 CATCGTGGCAGCCCCTGA 62.100 66.667 9.64 4.22 32.44 3.86
2380 4484 3.790437 ATCGTGGCAGCCCCTGAG 61.790 66.667 9.64 0.00 32.44 3.35
2392 4496 4.864334 CCTGAGCCCGCACCCATC 62.864 72.222 0.00 0.00 0.00 3.51
2393 4497 4.100084 CTGAGCCCGCACCCATCA 62.100 66.667 0.00 0.00 0.00 3.07
2394 4498 4.100084 TGAGCCCGCACCCATCAG 62.100 66.667 0.00 0.00 0.00 2.90
2395 4499 4.101448 GAGCCCGCACCCATCAGT 62.101 66.667 0.00 0.00 0.00 3.41
2396 4500 4.415150 AGCCCGCACCCATCAGTG 62.415 66.667 0.00 0.00 40.88 3.66
2402 4506 3.807538 CACCCATCAGTGCAGCGC 61.808 66.667 0.00 0.00 0.00 5.92
2404 4508 4.790962 CCCATCAGTGCAGCGCCT 62.791 66.667 2.29 0.00 0.00 5.52
2405 4509 3.200593 CCATCAGTGCAGCGCCTC 61.201 66.667 2.29 0.00 0.00 4.70
2406 4510 3.200593 CATCAGTGCAGCGCCTCC 61.201 66.667 2.29 0.00 0.00 4.30
2407 4511 4.827087 ATCAGTGCAGCGCCTCCG 62.827 66.667 2.29 0.00 37.57 4.63
2413 4517 4.940593 GCAGCGCCTCCGAGCTAG 62.941 72.222 2.29 0.00 44.07 3.42
2414 4518 4.277593 CAGCGCCTCCGAGCTAGG 62.278 72.222 6.52 6.52 44.07 3.02
2420 4524 4.577246 CTCCGAGCTAGGCGCCAC 62.577 72.222 31.54 17.93 40.39 5.01
2423 4527 4.435436 CGAGCTAGGCGCCACACA 62.435 66.667 31.54 9.67 40.39 3.72
2424 4528 2.187946 GAGCTAGGCGCCACACAT 59.812 61.111 31.54 10.27 40.39 3.21
2425 4529 2.124983 AGCTAGGCGCCACACATG 60.125 61.111 31.54 12.28 40.39 3.21
2426 4530 2.436646 GCTAGGCGCCACACATGT 60.437 61.111 31.54 8.51 0.00 3.21
2427 4531 1.153449 GCTAGGCGCCACACATGTA 60.153 57.895 31.54 9.35 0.00 2.29
2428 4532 0.742990 GCTAGGCGCCACACATGTAA 60.743 55.000 31.54 0.72 0.00 2.41
2429 4533 1.953559 CTAGGCGCCACACATGTAAT 58.046 50.000 31.54 5.89 0.00 1.89
2439 4543 4.696078 CATGTAATGTGCAGCGCC 57.304 55.556 2.29 0.00 40.20 6.53
2440 4544 2.100846 CATGTAATGTGCAGCGCCT 58.899 52.632 2.29 0.00 40.20 5.52
2441 4545 1.298602 CATGTAATGTGCAGCGCCTA 58.701 50.000 2.29 0.00 40.20 3.93
2442 4546 1.262417 CATGTAATGTGCAGCGCCTAG 59.738 52.381 2.29 0.00 40.20 3.02
2443 4547 4.498537 CATGTAATGTGCAGCGCCTAGC 62.499 54.545 2.29 7.01 42.81 3.42
2465 4569 4.996434 GGGCGCTGCACTGTGACT 62.996 66.667 12.86 0.00 0.00 3.41
2466 4570 2.974698 GGCGCTGCACTGTGACTT 60.975 61.111 12.86 0.00 0.00 3.01
2467 4571 1.667830 GGCGCTGCACTGTGACTTA 60.668 57.895 12.86 0.00 0.00 2.24
2468 4572 1.021390 GGCGCTGCACTGTGACTTAT 61.021 55.000 12.86 0.00 0.00 1.73
2469 4573 0.371645 GCGCTGCACTGTGACTTATC 59.628 55.000 12.86 0.00 0.00 1.75
2470 4574 1.002366 CGCTGCACTGTGACTTATCC 58.998 55.000 12.86 0.00 0.00 2.59
2471 4575 1.672737 CGCTGCACTGTGACTTATCCA 60.673 52.381 12.86 0.00 0.00 3.41
2472 4576 2.005451 GCTGCACTGTGACTTATCCAG 58.995 52.381 12.86 8.32 32.42 3.86
2473 4577 2.005451 CTGCACTGTGACTTATCCAGC 58.995 52.381 12.86 0.00 30.41 4.85
2474 4578 1.339055 TGCACTGTGACTTATCCAGCC 60.339 52.381 12.86 0.00 30.41 4.85
2475 4579 1.645034 CACTGTGACTTATCCAGCCG 58.355 55.000 0.32 0.00 30.41 5.52
2476 4580 0.108138 ACTGTGACTTATCCAGCCGC 60.108 55.000 0.00 0.00 30.41 6.53
2477 4581 1.148157 CTGTGACTTATCCAGCCGCG 61.148 60.000 0.00 0.00 0.00 6.46
2478 4582 1.883084 GTGACTTATCCAGCCGCGG 60.883 63.158 24.05 24.05 0.00 6.46
2479 4583 2.967615 GACTTATCCAGCCGCGGC 60.968 66.667 42.34 42.34 42.33 6.53
2499 4603 4.825679 CCCTCTCCTCCCCCACCC 62.826 77.778 0.00 0.00 0.00 4.61
2500 4604 4.024984 CCTCTCCTCCCCCACCCA 62.025 72.222 0.00 0.00 0.00 4.51
2501 4605 2.689034 CTCTCCTCCCCCACCCAC 60.689 72.222 0.00 0.00 0.00 4.61
2502 4606 4.348495 TCTCCTCCCCCACCCACC 62.348 72.222 0.00 0.00 0.00 4.61
2507 4611 4.645252 TCCCCCACCCACCCCATT 62.645 66.667 0.00 0.00 0.00 3.16
2508 4612 4.397010 CCCCCACCCACCCCATTG 62.397 72.222 0.00 0.00 0.00 2.82
2510 4614 4.313707 CCCACCCACCCCATTGCA 62.314 66.667 0.00 0.00 0.00 4.08
2511 4615 2.996734 CCACCCACCCCATTGCAC 60.997 66.667 0.00 0.00 0.00 4.57
2512 4616 2.996734 CACCCACCCCATTGCACC 60.997 66.667 0.00 0.00 0.00 5.01
2513 4617 3.516512 ACCCACCCCATTGCACCA 61.517 61.111 0.00 0.00 0.00 4.17
2514 4618 2.681064 CCCACCCCATTGCACCAG 60.681 66.667 0.00 0.00 0.00 4.00
2515 4619 3.384532 CCACCCCATTGCACCAGC 61.385 66.667 0.00 0.00 42.57 4.85
2527 4631 2.688364 GCACCAGCAGTTACAGAAAC 57.312 50.000 0.00 0.00 41.58 2.78
2528 4632 1.946768 GCACCAGCAGTTACAGAAACA 59.053 47.619 0.00 0.00 40.83 2.83
2529 4633 2.287009 GCACCAGCAGTTACAGAAACAC 60.287 50.000 0.00 0.00 40.83 3.32
2530 4634 2.032894 CACCAGCAGTTACAGAAACACG 60.033 50.000 0.00 0.00 40.83 4.49
2531 4635 1.069906 CCAGCAGTTACAGAAACACGC 60.070 52.381 0.00 0.00 40.83 5.34
2532 4636 0.859232 AGCAGTTACAGAAACACGCG 59.141 50.000 3.53 3.53 41.29 6.01
2533 4637 0.110823 GCAGTTACAGAAACACGCGG 60.111 55.000 12.47 1.27 40.83 6.46
2534 4638 0.110823 CAGTTACAGAAACACGCGGC 60.111 55.000 12.47 0.00 40.83 6.53
2535 4639 1.154727 GTTACAGAAACACGCGGCG 60.155 57.895 22.36 22.36 38.05 6.46
2536 4640 2.311701 TTACAGAAACACGCGGCGG 61.312 57.895 27.37 17.33 0.00 6.13
2555 4659 4.890306 GGCCCTCTCCTCTCCCCC 62.890 77.778 0.00 0.00 0.00 5.40
2556 4660 3.773154 GCCCTCTCCTCTCCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
2557 4661 2.612251 CCCTCTCCTCTCCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
2558 4662 2.018086 CCCTCTCCTCTCCCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
2559 4663 1.541672 CCTCTCCTCTCCCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
2560 4664 1.292941 CCTCTCCTCTCCCCCTCTCA 61.293 65.000 0.00 0.00 0.00 3.27
2561 4665 0.633921 CTCTCCTCTCCCCCTCTCAA 59.366 60.000 0.00 0.00 0.00 3.02
2562 4666 1.220236 CTCTCCTCTCCCCCTCTCAAT 59.780 57.143 0.00 0.00 0.00 2.57
2563 4667 1.219213 TCTCCTCTCCCCCTCTCAATC 59.781 57.143 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.752168 AGAAAGAAAACATGGATTTGGACAG 58.248 36.000 0.00 0.00 0.00 3.51
60 61 6.729690 AGAAAGAAAACATGGATTTGGACA 57.270 33.333 0.00 0.00 0.00 4.02
111 124 9.466497 TGACAAAAGCTTATGGAAGAAGATTAT 57.534 29.630 0.00 0.00 31.57 1.28
112 125 8.862325 TGACAAAAGCTTATGGAAGAAGATTA 57.138 30.769 0.00 0.00 31.57 1.75
128 141 5.008712 GTGGTAGCCCTTATATGACAAAAGC 59.991 44.000 0.00 0.00 0.00 3.51
130 143 5.120399 CGTGGTAGCCCTTATATGACAAAA 58.880 41.667 0.00 0.00 0.00 2.44
131 144 4.162698 ACGTGGTAGCCCTTATATGACAAA 59.837 41.667 0.00 0.00 0.00 2.83
139 152 1.134491 GCAAGACGTGGTAGCCCTTAT 60.134 52.381 0.00 0.00 0.00 1.73
150 163 2.040544 GGGGTGATGGCAAGACGTG 61.041 63.158 0.00 0.00 0.00 4.49
156 174 2.283821 GCCAAGGGGTGATGGCAA 60.284 61.111 11.67 0.00 45.99 4.52
164 182 0.853586 TAAAGGGATGGCCAAGGGGT 60.854 55.000 10.96 0.00 36.17 4.95
192 1841 5.174037 TGAATCGAAGGGTAAAACCATCT 57.826 39.130 0.00 0.00 41.02 2.90
209 1858 5.665916 ATTTGTGGTGAAGGGAATGAATC 57.334 39.130 0.00 0.00 0.00 2.52
239 1888 1.737793 CGGTGCAAGGGTTAGTTCATC 59.262 52.381 0.00 0.00 0.00 2.92
280 1929 1.476891 GGTTCAGAGTGACTGCCGATA 59.523 52.381 0.00 0.00 45.38 2.92
288 1937 3.057174 AGAACGATGAGGTTCAGAGTGAC 60.057 47.826 8.01 0.00 46.81 3.67
341 1990 5.060662 TGTTCATTCAAACAAAACGGTGA 57.939 34.783 0.00 0.00 36.25 4.02
346 1995 9.862585 GGTGATTTATGTTCATTCAAACAAAAC 57.137 29.630 0.00 0.00 42.10 2.43
422 2071 7.197071 TCTTTTACGAATTTGCTAAAGCTCA 57.803 32.000 12.24 0.00 42.66 4.26
498 2147 3.568007 TGATTTTGGTTCGTCTTCCTTGG 59.432 43.478 0.00 0.00 0.00 3.61
543 2192 1.511850 GTGGCAGTTTTTGATTGGGC 58.488 50.000 0.00 0.00 0.00 5.36
556 2249 2.086869 CATGGTTGTTAGAGGTGGCAG 58.913 52.381 0.00 0.00 0.00 4.85
560 2499 5.048991 GGTTGTTACATGGTTGTTAGAGGTG 60.049 44.000 0.00 0.00 37.28 4.00
561 2500 5.067954 GGTTGTTACATGGTTGTTAGAGGT 58.932 41.667 0.00 0.00 37.28 3.85
563 2502 5.181245 CAGGGTTGTTACATGGTTGTTAGAG 59.819 44.000 0.00 0.00 37.28 2.43
564 2503 5.067273 CAGGGTTGTTACATGGTTGTTAGA 58.933 41.667 0.00 0.00 37.28 2.10
565 2504 4.825085 ACAGGGTTGTTACATGGTTGTTAG 59.175 41.667 0.00 0.00 37.28 2.34
566 2505 4.580995 CACAGGGTTGTTACATGGTTGTTA 59.419 41.667 0.00 0.00 34.63 2.41
567 2506 3.383185 CACAGGGTTGTTACATGGTTGTT 59.617 43.478 0.00 0.00 34.63 2.83
568 2507 2.955660 CACAGGGTTGTTACATGGTTGT 59.044 45.455 0.00 0.00 36.16 3.32
569 2508 3.218453 TCACAGGGTTGTTACATGGTTG 58.782 45.455 0.00 0.00 34.62 3.77
570 2509 3.586470 TCACAGGGTTGTTACATGGTT 57.414 42.857 0.00 0.00 34.62 3.67
571 2510 3.137544 TCTTCACAGGGTTGTTACATGGT 59.862 43.478 0.00 0.00 34.62 3.55
572 2511 3.750371 TCTTCACAGGGTTGTTACATGG 58.250 45.455 0.00 0.00 34.62 3.66
573 2512 5.707298 AGAATCTTCACAGGGTTGTTACATG 59.293 40.000 0.00 0.00 34.62 3.21
574 2513 5.707298 CAGAATCTTCACAGGGTTGTTACAT 59.293 40.000 0.00 0.00 34.62 2.29
575 2514 5.063204 CAGAATCTTCACAGGGTTGTTACA 58.937 41.667 0.00 0.00 34.62 2.41
576 2515 5.049405 CACAGAATCTTCACAGGGTTGTTAC 60.049 44.000 0.00 0.00 34.62 2.50
589 2528 7.891183 ACAATACTACACACACAGAATCTTC 57.109 36.000 0.00 0.00 0.00 2.87
597 2536 7.147143 ACAAAACAACAATACTACACACACA 57.853 32.000 0.00 0.00 0.00 3.72
608 2547 6.149129 TGGCATGTGTACAAAACAACAATA 57.851 33.333 0.00 0.00 40.63 1.90
643 2582 1.303561 GCCTGTTCACCATGAGGCA 60.304 57.895 14.31 1.21 35.87 4.75
654 2593 1.600916 GGTGAGTGGTGGCCTGTTC 60.601 63.158 3.32 0.00 0.00 3.18
661 2600 0.401738 AGTTGGATGGTGAGTGGTGG 59.598 55.000 0.00 0.00 0.00 4.61
675 2614 7.065803 TGAGAGTACACTCAAAAGAAAAGTTGG 59.934 37.037 19.09 0.00 45.21 3.77
747 2689 6.884280 AAGAAGTTGAATGGTAAGTTCCAG 57.116 37.500 0.00 0.00 41.05 3.86
942 3008 1.561542 AGAGGAATTCGGTCATGGCTT 59.438 47.619 0.00 0.00 0.00 4.35
943 3009 1.207791 AGAGGAATTCGGTCATGGCT 58.792 50.000 0.00 0.00 0.00 4.75
944 3010 2.910688 TAGAGGAATTCGGTCATGGC 57.089 50.000 8.65 0.00 0.00 4.40
945 3011 5.009010 CCATTTTAGAGGAATTCGGTCATGG 59.991 44.000 8.65 8.37 0.00 3.66
946 3012 5.822519 TCCATTTTAGAGGAATTCGGTCATG 59.177 40.000 8.65 0.00 0.00 3.07
947 3013 6.001449 TCCATTTTAGAGGAATTCGGTCAT 57.999 37.500 8.65 0.00 0.00 3.06
948 3014 5.429681 TCCATTTTAGAGGAATTCGGTCA 57.570 39.130 8.65 0.00 0.00 4.02
949 3015 6.598064 TCTTTCCATTTTAGAGGAATTCGGTC 59.402 38.462 0.00 0.00 43.02 4.79
950 3016 6.481643 TCTTTCCATTTTAGAGGAATTCGGT 58.518 36.000 0.00 0.00 43.02 4.69
951 3017 7.391148 TTCTTTCCATTTTAGAGGAATTCGG 57.609 36.000 0.00 0.00 43.02 4.30
952 3018 9.129209 GTTTTCTTTCCATTTTAGAGGAATTCG 57.871 33.333 0.00 0.00 43.02 3.34
953 3019 9.129209 CGTTTTCTTTCCATTTTAGAGGAATTC 57.871 33.333 0.00 0.00 43.02 2.17
954 3020 8.638873 ACGTTTTCTTTCCATTTTAGAGGAATT 58.361 29.630 0.00 0.00 43.02 2.17
955 3021 8.178313 ACGTTTTCTTTCCATTTTAGAGGAAT 57.822 30.769 0.00 0.00 43.02 3.01
956 3022 7.576861 ACGTTTTCTTTCCATTTTAGAGGAA 57.423 32.000 0.00 0.00 41.92 3.36
957 3023 8.680039 TTACGTTTTCTTTCCATTTTAGAGGA 57.320 30.769 0.00 0.00 0.00 3.71
958 3024 9.738832 TTTTACGTTTTCTTTCCATTTTAGAGG 57.261 29.630 0.00 0.00 0.00 3.69
960 3026 9.240159 GCTTTTACGTTTTCTTTCCATTTTAGA 57.760 29.630 0.00 0.00 0.00 2.10
961 3027 8.205297 CGCTTTTACGTTTTCTTTCCATTTTAG 58.795 33.333 0.00 0.00 0.00 1.85
962 3028 7.701501 ACGCTTTTACGTTTTCTTTCCATTTTA 59.298 29.630 0.00 0.00 45.75 1.52
963 3029 6.532302 ACGCTTTTACGTTTTCTTTCCATTTT 59.468 30.769 0.00 0.00 45.75 1.82
964 3030 6.037726 ACGCTTTTACGTTTTCTTTCCATTT 58.962 32.000 0.00 0.00 45.75 2.32
965 3031 5.584442 ACGCTTTTACGTTTTCTTTCCATT 58.416 33.333 0.00 0.00 45.75 3.16
966 3032 5.177725 ACGCTTTTACGTTTTCTTTCCAT 57.822 34.783 0.00 0.00 45.75 3.41
967 3033 4.619437 ACGCTTTTACGTTTTCTTTCCA 57.381 36.364 0.00 0.00 45.75 3.53
968 3034 5.393452 GTGTACGCTTTTACGTTTTCTTTCC 59.607 40.000 0.00 0.00 45.75 3.13
969 3035 5.958949 TGTGTACGCTTTTACGTTTTCTTTC 59.041 36.000 8.10 0.00 45.75 2.62
970 3036 5.867166 TGTGTACGCTTTTACGTTTTCTTT 58.133 33.333 8.10 0.00 45.75 2.52
971 3037 5.467902 TGTGTACGCTTTTACGTTTTCTT 57.532 34.783 8.10 0.00 45.75 2.52
972 3038 5.437263 CATGTGTACGCTTTTACGTTTTCT 58.563 37.500 8.10 0.00 45.75 2.52
973 3039 4.086105 GCATGTGTACGCTTTTACGTTTTC 59.914 41.667 8.10 0.00 45.75 2.29
974 3040 3.969981 GCATGTGTACGCTTTTACGTTTT 59.030 39.130 8.10 0.00 45.75 2.43
975 3041 3.249080 AGCATGTGTACGCTTTTACGTTT 59.751 39.130 8.10 0.00 45.75 3.60
976 3042 2.803956 AGCATGTGTACGCTTTTACGTT 59.196 40.909 8.10 0.00 45.75 3.99
977 3043 2.803956 AAGCATGTGTACGCTTTTACGT 59.196 40.909 8.10 0.00 46.04 3.57
978 3044 3.120820 TCAAGCATGTGTACGCTTTTACG 60.121 43.478 8.10 0.00 46.04 3.18
979 3045 4.398549 TCAAGCATGTGTACGCTTTTAC 57.601 40.909 8.10 0.00 46.04 2.01
980 3046 4.142708 CCATCAAGCATGTGTACGCTTTTA 60.143 41.667 8.10 0.00 46.04 1.52
981 3047 3.366273 CCATCAAGCATGTGTACGCTTTT 60.366 43.478 8.10 0.00 46.04 2.27
982 3048 2.162208 CCATCAAGCATGTGTACGCTTT 59.838 45.455 8.10 0.00 46.04 3.51
984 3050 1.372582 CCATCAAGCATGTGTACGCT 58.627 50.000 8.10 0.00 41.20 5.07
985 3051 0.378257 CCCATCAAGCATGTGTACGC 59.622 55.000 0.00 0.00 0.00 4.42
986 3052 1.016627 CCCCATCAAGCATGTGTACG 58.983 55.000 0.00 0.00 0.00 3.67
987 3053 1.064758 TCCCCCATCAAGCATGTGTAC 60.065 52.381 0.00 0.00 0.00 2.90
988 3054 1.294041 TCCCCCATCAAGCATGTGTA 58.706 50.000 0.00 0.00 0.00 2.90
989 3055 0.409092 TTCCCCCATCAAGCATGTGT 59.591 50.000 0.00 0.00 0.00 3.72
990 3056 1.479323 CTTTCCCCCATCAAGCATGTG 59.521 52.381 0.00 0.00 0.00 3.21
991 3057 1.856629 CTTTCCCCCATCAAGCATGT 58.143 50.000 0.00 0.00 0.00 3.21
992 3058 0.462789 GCTTTCCCCCATCAAGCATG 59.537 55.000 0.00 0.00 42.18 4.06
993 3059 0.688749 GGCTTTCCCCCATCAAGCAT 60.689 55.000 5.55 0.00 44.04 3.79
994 3060 1.305213 GGCTTTCCCCCATCAAGCA 60.305 57.895 5.55 0.00 44.04 3.91
995 3061 2.418083 CGGCTTTCCCCCATCAAGC 61.418 63.158 0.00 0.00 41.93 4.01
996 3062 1.754234 CCGGCTTTCCCCCATCAAG 60.754 63.158 0.00 0.00 0.00 3.02
997 3063 2.358619 CCGGCTTTCCCCCATCAA 59.641 61.111 0.00 0.00 0.00 2.57
998 3064 4.440829 GCCGGCTTTCCCCCATCA 62.441 66.667 22.15 0.00 0.00 3.07
1126 3192 2.202892 GCGGCTAGGGTTTCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
1170 3236 3.434319 GTGTGATGGGTGCAGCGG 61.434 66.667 10.24 0.00 0.00 5.52
1171 3237 2.520465 TAGGTGTGATGGGTGCAGCG 62.520 60.000 10.24 0.00 35.97 5.18
1172 3238 1.026718 GTAGGTGTGATGGGTGCAGC 61.027 60.000 7.55 7.55 0.00 5.25
1173 3239 0.740868 CGTAGGTGTGATGGGTGCAG 60.741 60.000 0.00 0.00 0.00 4.41
1174 3240 1.295101 CGTAGGTGTGATGGGTGCA 59.705 57.895 0.00 0.00 0.00 4.57
1324 3390 3.041940 CGAGGTGCCGTTGACCAC 61.042 66.667 0.00 0.00 35.76 4.16
1344 3410 0.393537 CAGTTGGCTGGAGGGATGAC 60.394 60.000 0.00 0.00 39.01 3.06
1346 3412 0.038744 AACAGTTGGCTGGAGGGATG 59.961 55.000 0.00 0.00 46.62 3.51
1485 3566 3.429141 TCGGAGTCCTCGTCGCAC 61.429 66.667 7.77 0.00 0.00 5.34
1516 3597 2.165301 CGTCCTCCAAATCGTCGCC 61.165 63.158 0.00 0.00 0.00 5.54
1615 3696 5.632959 ACGAAACAACAAAATTTCTCGACA 58.367 33.333 0.00 0.00 33.49 4.35
1730 3814 8.564574 CAAGCTGAAATTTAGGTACTACAAACA 58.435 33.333 0.00 0.00 42.67 2.83
1731 3815 8.565416 ACAAGCTGAAATTTAGGTACTACAAAC 58.435 33.333 0.00 0.00 42.67 2.93
1732 3816 8.685838 ACAAGCTGAAATTTAGGTACTACAAA 57.314 30.769 0.00 0.00 42.67 2.83
1733 3817 8.564574 CAACAAGCTGAAATTTAGGTACTACAA 58.435 33.333 0.00 0.00 42.67 2.41
1734 3818 7.934665 TCAACAAGCTGAAATTTAGGTACTACA 59.065 33.333 0.00 0.00 42.67 2.74
1735 3819 8.319143 TCAACAAGCTGAAATTTAGGTACTAC 57.681 34.615 0.00 0.00 42.67 2.73
1819 3909 4.383649 CGTTCAATTCTCATTGCCAAAGTG 59.616 41.667 0.00 0.00 39.90 3.16
2024 4128 1.431440 GTTCGCAAACCAGCACACA 59.569 52.632 0.00 0.00 0.00 3.72
2052 4156 2.203056 CATCCCGCATCGCCTTGA 60.203 61.111 0.00 0.00 0.00 3.02
2064 4168 1.273327 CCCTTCACAAGTTTGCATCCC 59.727 52.381 0.00 0.00 0.00 3.85
2092 4196 3.349481 GAGCTTCAGCCTCGCTCGT 62.349 63.158 0.00 0.00 40.48 4.18
2140 4244 5.229423 CGCCCAACCCATGATATATTTTTG 58.771 41.667 0.00 0.00 0.00 2.44
2146 4250 0.695924 CCCGCCCAACCCATGATATA 59.304 55.000 0.00 0.00 0.00 0.86
2149 4253 4.839706 GCCCGCCCAACCCATGAT 62.840 66.667 0.00 0.00 0.00 2.45
2170 4274 6.112058 AGCTCCAAGAGAGTAAAATCATGTC 58.888 40.000 0.00 0.00 45.21 3.06
2174 4278 4.382040 CGGAGCTCCAAGAGAGTAAAATCA 60.382 45.833 31.67 0.00 45.21 2.57
2206 4310 6.293900 CCCAGGTCAAAATTGTTAAATTTGCC 60.294 38.462 0.00 0.00 43.63 4.52
2207 4311 6.484977 TCCCAGGTCAAAATTGTTAAATTTGC 59.515 34.615 0.00 0.00 43.63 3.68
2208 4312 7.307101 CGTCCCAGGTCAAAATTGTTAAATTTG 60.307 37.037 0.00 0.00 43.63 2.32
2209 4313 6.704050 CGTCCCAGGTCAAAATTGTTAAATTT 59.296 34.615 0.00 0.00 45.81 1.82
2210 4314 6.041069 TCGTCCCAGGTCAAAATTGTTAAATT 59.959 34.615 0.00 0.00 37.61 1.82
2211 4315 5.536916 TCGTCCCAGGTCAAAATTGTTAAAT 59.463 36.000 0.00 0.00 0.00 1.40
2212 4316 4.888239 TCGTCCCAGGTCAAAATTGTTAAA 59.112 37.500 0.00 0.00 0.00 1.52
2213 4317 4.462133 TCGTCCCAGGTCAAAATTGTTAA 58.538 39.130 0.00 0.00 0.00 2.01
2214 4318 4.088056 TCGTCCCAGGTCAAAATTGTTA 57.912 40.909 0.00 0.00 0.00 2.41
2215 4319 2.938838 TCGTCCCAGGTCAAAATTGTT 58.061 42.857 0.00 0.00 0.00 2.83
2216 4320 2.649531 TCGTCCCAGGTCAAAATTGT 57.350 45.000 0.00 0.00 0.00 2.71
2217 4321 4.022416 TGATTTCGTCCCAGGTCAAAATTG 60.022 41.667 0.00 0.00 0.00 2.32
2218 4322 4.148838 TGATTTCGTCCCAGGTCAAAATT 58.851 39.130 0.00 0.00 0.00 1.82
2219 4323 3.761897 TGATTTCGTCCCAGGTCAAAAT 58.238 40.909 0.00 0.00 0.00 1.82
2220 4324 3.216187 TGATTTCGTCCCAGGTCAAAA 57.784 42.857 0.00 0.00 0.00 2.44
2221 4325 2.940994 TGATTTCGTCCCAGGTCAAA 57.059 45.000 0.00 0.00 0.00 2.69
2222 4326 2.940994 TTGATTTCGTCCCAGGTCAA 57.059 45.000 0.00 0.00 0.00 3.18
2223 4327 2.940994 TTTGATTTCGTCCCAGGTCA 57.059 45.000 0.00 0.00 0.00 4.02
2224 4328 3.127030 GTGATTTGATTTCGTCCCAGGTC 59.873 47.826 0.00 0.00 0.00 3.85
2225 4329 3.081804 GTGATTTGATTTCGTCCCAGGT 58.918 45.455 0.00 0.00 0.00 4.00
2226 4330 3.081061 TGTGATTTGATTTCGTCCCAGG 58.919 45.455 0.00 0.00 0.00 4.45
2227 4331 4.970662 ATGTGATTTGATTTCGTCCCAG 57.029 40.909 0.00 0.00 0.00 4.45
2228 4332 8.512966 TTATTATGTGATTTGATTTCGTCCCA 57.487 30.769 0.00 0.00 0.00 4.37
2229 4333 9.233232 GTTTATTATGTGATTTGATTTCGTCCC 57.767 33.333 0.00 0.00 0.00 4.46
2232 4336 9.289303 GCAGTTTATTATGTGATTTGATTTCGT 57.711 29.630 0.00 0.00 0.00 3.85
2233 4337 8.745837 GGCAGTTTATTATGTGATTTGATTTCG 58.254 33.333 0.00 0.00 0.00 3.46
2234 4338 9.034544 GGGCAGTTTATTATGTGATTTGATTTC 57.965 33.333 0.00 0.00 0.00 2.17
2235 4339 7.706179 CGGGCAGTTTATTATGTGATTTGATTT 59.294 33.333 0.00 0.00 0.00 2.17
2236 4340 7.147915 ACGGGCAGTTTATTATGTGATTTGATT 60.148 33.333 0.00 0.00 0.00 2.57
2237 4341 6.321181 ACGGGCAGTTTATTATGTGATTTGAT 59.679 34.615 0.00 0.00 0.00 2.57
2238 4342 5.650266 ACGGGCAGTTTATTATGTGATTTGA 59.350 36.000 0.00 0.00 0.00 2.69
2239 4343 5.743398 CACGGGCAGTTTATTATGTGATTTG 59.257 40.000 0.00 0.00 0.00 2.32
2240 4344 5.650266 TCACGGGCAGTTTATTATGTGATTT 59.350 36.000 0.00 0.00 30.82 2.17
2241 4345 5.189928 TCACGGGCAGTTTATTATGTGATT 58.810 37.500 0.00 0.00 30.82 2.57
2242 4346 4.776349 TCACGGGCAGTTTATTATGTGAT 58.224 39.130 0.00 0.00 30.82 3.06
2243 4347 4.209307 TCACGGGCAGTTTATTATGTGA 57.791 40.909 0.00 0.00 33.14 3.58
2244 4348 4.955925 TTCACGGGCAGTTTATTATGTG 57.044 40.909 0.00 0.00 0.00 3.21
2245 4349 5.007682 AGTTTCACGGGCAGTTTATTATGT 58.992 37.500 0.00 0.00 0.00 2.29
2246 4350 5.560966 AGTTTCACGGGCAGTTTATTATG 57.439 39.130 0.00 0.00 0.00 1.90
2247 4351 7.875327 AATAGTTTCACGGGCAGTTTATTAT 57.125 32.000 0.00 0.00 0.00 1.28
2248 4352 7.390996 TGAAATAGTTTCACGGGCAGTTTATTA 59.609 33.333 1.24 0.00 44.21 0.98
2249 4353 6.207810 TGAAATAGTTTCACGGGCAGTTTATT 59.792 34.615 1.24 0.00 44.21 1.40
2250 4354 5.708230 TGAAATAGTTTCACGGGCAGTTTAT 59.292 36.000 1.24 0.00 44.21 1.40
2251 4355 5.064558 TGAAATAGTTTCACGGGCAGTTTA 58.935 37.500 1.24 0.00 44.21 2.01
2252 4356 3.886505 TGAAATAGTTTCACGGGCAGTTT 59.113 39.130 1.24 0.00 44.21 2.66
2253 4357 3.482436 TGAAATAGTTTCACGGGCAGTT 58.518 40.909 1.24 0.00 44.21 3.16
2254 4358 3.134574 TGAAATAGTTTCACGGGCAGT 57.865 42.857 1.24 0.00 44.21 4.40
2262 4366 3.059461 GTCAACCGCGTGAAATAGTTTCA 60.059 43.478 4.92 1.24 46.68 2.69
2263 4367 3.476181 GTCAACCGCGTGAAATAGTTTC 58.524 45.455 4.92 0.00 40.08 2.78
2264 4368 2.224784 GGTCAACCGCGTGAAATAGTTT 59.775 45.455 4.92 0.00 0.00 2.66
2265 4369 1.802365 GGTCAACCGCGTGAAATAGTT 59.198 47.619 4.92 0.00 0.00 2.24
2266 4370 1.001633 AGGTCAACCGCGTGAAATAGT 59.998 47.619 4.92 0.00 42.08 2.12
2267 4371 1.722011 AGGTCAACCGCGTGAAATAG 58.278 50.000 4.92 0.00 42.08 1.73
2268 4372 2.172851 AAGGTCAACCGCGTGAAATA 57.827 45.000 4.92 0.00 42.08 1.40
2269 4373 1.314730 AAAGGTCAACCGCGTGAAAT 58.685 45.000 4.92 0.00 42.08 2.17
2270 4374 1.096416 AAAAGGTCAACCGCGTGAAA 58.904 45.000 4.92 0.00 42.08 2.69
2271 4375 1.096416 AAAAAGGTCAACCGCGTGAA 58.904 45.000 4.92 0.00 42.08 3.18
2272 4376 0.378962 CAAAAAGGTCAACCGCGTGA 59.621 50.000 4.92 0.00 42.08 4.35
2273 4377 0.099791 ACAAAAAGGTCAACCGCGTG 59.900 50.000 4.92 0.00 42.08 5.34
2274 4378 0.099791 CACAAAAAGGTCAACCGCGT 59.900 50.000 4.92 0.00 42.08 6.01
2275 4379 0.099791 ACACAAAAAGGTCAACCGCG 59.900 50.000 0.00 0.00 42.08 6.46
2276 4380 1.555477 CACACAAAAAGGTCAACCGC 58.445 50.000 0.00 0.00 42.08 5.68
2277 4381 1.801025 GCCACACAAAAAGGTCAACCG 60.801 52.381 0.00 0.00 42.08 4.44
2278 4382 1.801025 CGCCACACAAAAAGGTCAACC 60.801 52.381 0.00 0.00 0.00 3.77
2279 4383 1.555477 CGCCACACAAAAAGGTCAAC 58.445 50.000 0.00 0.00 0.00 3.18
2280 4384 0.179124 GCGCCACACAAAAAGGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
2281 4385 1.435515 GCGCCACACAAAAAGGTCA 59.564 52.632 0.00 0.00 0.00 4.02
2282 4386 1.299850 GGCGCCACACAAAAAGGTC 60.300 57.895 24.80 0.00 0.00 3.85
2283 4387 2.791868 GGGCGCCACACAAAAAGGT 61.792 57.895 30.85 0.00 0.00 3.50
2284 4388 2.028925 GGGCGCCACACAAAAAGG 59.971 61.111 30.85 0.00 0.00 3.11
2285 4389 2.354539 CGGGCGCCACACAAAAAG 60.355 61.111 30.85 3.27 0.00 2.27
2286 4390 2.829003 TCGGGCGCCACACAAAAA 60.829 55.556 30.85 0.05 0.00 1.94
2287 4391 3.587933 GTCGGGCGCCACACAAAA 61.588 61.111 30.85 1.26 0.00 2.44
2288 4392 4.858680 TGTCGGGCGCCACACAAA 62.859 61.111 30.85 5.83 0.00 2.83
2310 4414 4.157120 ATCGTAGGGTGTGGCGCC 62.157 66.667 22.73 22.73 0.00 6.53
2311 4415 2.890474 CATCGTAGGGTGTGGCGC 60.890 66.667 0.00 0.00 0.00 6.53
2312 4416 2.890474 GCATCGTAGGGTGTGGCG 60.890 66.667 0.00 0.00 0.00 5.69
2313 4417 1.815421 CTGCATCGTAGGGTGTGGC 60.815 63.158 0.00 0.00 0.00 5.01
2314 4418 1.815421 GCTGCATCGTAGGGTGTGG 60.815 63.158 0.00 0.00 0.00 4.17
2315 4419 2.167219 CGCTGCATCGTAGGGTGTG 61.167 63.158 0.88 0.00 0.00 3.82
2316 4420 2.184322 CGCTGCATCGTAGGGTGT 59.816 61.111 0.88 0.00 0.00 4.16
2317 4421 3.264897 GCGCTGCATCGTAGGGTG 61.265 66.667 12.03 0.00 0.00 4.61
2318 4422 4.530857 GGCGCTGCATCGTAGGGT 62.531 66.667 12.03 0.00 0.00 4.34
2319 4423 2.755542 CTAGGCGCTGCATCGTAGGG 62.756 65.000 12.03 0.00 0.00 3.53
2320 4424 1.372251 CTAGGCGCTGCATCGTAGG 60.372 63.158 12.03 0.00 0.00 3.18
2321 4425 2.018866 GCTAGGCGCTGCATCGTAG 61.019 63.158 12.03 7.44 35.14 3.51
2322 4426 2.027605 GCTAGGCGCTGCATCGTA 59.972 61.111 12.03 0.00 35.14 3.43
2323 4427 4.147449 TGCTAGGCGCTGCATCGT 62.147 61.111 12.03 0.00 40.11 3.73
2324 4428 3.634072 GTGCTAGGCGCTGCATCG 61.634 66.667 21.26 5.40 41.45 3.84
2325 4429 3.634072 CGTGCTAGGCGCTGCATC 61.634 66.667 21.26 15.11 41.45 3.91
2329 4433 4.880537 CCTCCGTGCTAGGCGCTG 62.881 72.222 7.64 0.00 40.11 5.18
2345 4449 0.179045 ATGGATAGAGGTGCAACGCC 60.179 55.000 0.31 0.00 38.12 5.68
2346 4450 1.221414 GATGGATAGAGGTGCAACGC 58.779 55.000 0.00 0.00 38.12 4.84
2347 4451 1.202417 ACGATGGATAGAGGTGCAACG 60.202 52.381 0.00 0.00 40.51 4.10
2348 4452 2.205074 CACGATGGATAGAGGTGCAAC 58.795 52.381 0.00 0.00 0.00 4.17
2349 4453 1.138859 CCACGATGGATAGAGGTGCAA 59.861 52.381 0.00 0.00 40.96 4.08
2350 4454 0.752658 CCACGATGGATAGAGGTGCA 59.247 55.000 0.00 0.00 40.96 4.57
2351 4455 0.601311 GCCACGATGGATAGAGGTGC 60.601 60.000 8.04 0.00 40.96 5.01
2352 4456 0.752658 TGCCACGATGGATAGAGGTG 59.247 55.000 8.04 0.00 40.96 4.00
2353 4457 1.043816 CTGCCACGATGGATAGAGGT 58.956 55.000 8.04 0.00 40.96 3.85
2354 4458 0.320247 GCTGCCACGATGGATAGAGG 60.320 60.000 8.04 0.00 40.96 3.69
2355 4459 0.320247 GGCTGCCACGATGGATAGAG 60.320 60.000 15.17 0.37 40.96 2.43
2356 4460 1.748403 GGCTGCCACGATGGATAGA 59.252 57.895 15.17 0.00 40.96 1.98
2357 4461 1.302033 GGGCTGCCACGATGGATAG 60.302 63.158 22.05 6.37 40.96 2.08
2358 4462 2.818169 GGGGCTGCCACGATGGATA 61.818 63.158 22.05 0.00 40.96 2.59
2359 4463 4.195334 GGGGCTGCCACGATGGAT 62.195 66.667 22.05 0.00 40.96 3.41
2362 4466 4.100084 TCAGGGGCTGCCACGATG 62.100 66.667 22.05 12.58 28.26 3.84
2363 4467 3.790437 CTCAGGGGCTGCCACGAT 61.790 66.667 22.05 0.00 28.26 3.73
2375 4479 4.864334 GATGGGTGCGGGCTCAGG 62.864 72.222 0.00 0.00 0.00 3.86
2376 4480 4.100084 TGATGGGTGCGGGCTCAG 62.100 66.667 0.00 0.00 0.00 3.35
2377 4481 4.100084 CTGATGGGTGCGGGCTCA 62.100 66.667 0.00 0.00 0.00 4.26
2378 4482 4.101448 ACTGATGGGTGCGGGCTC 62.101 66.667 0.00 0.00 0.00 4.70
2379 4483 4.415150 CACTGATGGGTGCGGGCT 62.415 66.667 0.00 0.00 0.00 5.19
2385 4489 3.807538 GCGCTGCACTGATGGGTG 61.808 66.667 0.00 0.00 39.91 4.61
2387 4491 4.790962 AGGCGCTGCACTGATGGG 62.791 66.667 7.64 0.00 0.00 4.00
2388 4492 3.200593 GAGGCGCTGCACTGATGG 61.201 66.667 7.64 0.00 0.00 3.51
2389 4493 3.200593 GGAGGCGCTGCACTGATG 61.201 66.667 7.64 0.00 0.00 3.07
2390 4494 4.827087 CGGAGGCGCTGCACTGAT 62.827 66.667 7.64 0.00 0.00 2.90
2396 4500 4.940593 CTAGCTCGGAGGCGCTGC 62.941 72.222 7.64 0.00 36.29 5.25
2397 4501 4.277593 CCTAGCTCGGAGGCGCTG 62.278 72.222 7.64 0.00 36.29 5.18
2410 4514 1.599071 CATTACATGTGTGGCGCCTAG 59.401 52.381 29.70 12.91 0.00 3.02
2411 4515 1.065782 ACATTACATGTGTGGCGCCTA 60.066 47.619 29.70 14.39 43.01 3.93
2412 4516 0.322456 ACATTACATGTGTGGCGCCT 60.322 50.000 29.70 7.80 43.01 5.52
2413 4517 2.179764 ACATTACATGTGTGGCGCC 58.820 52.632 22.73 22.73 43.01 6.53
2421 4525 0.677731 AGGCGCTGCACATTACATGT 60.678 50.000 7.64 2.69 46.22 3.21
2422 4526 1.262417 CTAGGCGCTGCACATTACATG 59.738 52.381 7.64 0.00 0.00 3.21
2423 4527 1.586422 CTAGGCGCTGCACATTACAT 58.414 50.000 7.64 0.00 0.00 2.29
2424 4528 1.089481 GCTAGGCGCTGCACATTACA 61.089 55.000 7.64 0.00 35.14 2.41
2425 4529 1.643832 GCTAGGCGCTGCACATTAC 59.356 57.895 7.64 0.00 35.14 1.89
2426 4530 4.124910 GCTAGGCGCTGCACATTA 57.875 55.556 7.64 0.00 35.14 1.90
2448 4552 4.996434 AGTCACAGTGCAGCGCCC 62.996 66.667 2.29 0.00 0.00 6.13
2449 4553 1.021390 ATAAGTCACAGTGCAGCGCC 61.021 55.000 2.29 0.00 0.00 6.53
2450 4554 0.371645 GATAAGTCACAGTGCAGCGC 59.628 55.000 0.00 0.00 0.00 5.92
2451 4555 1.002366 GGATAAGTCACAGTGCAGCG 58.998 55.000 0.00 0.00 0.00 5.18
2452 4556 2.005451 CTGGATAAGTCACAGTGCAGC 58.995 52.381 0.00 0.00 0.00 5.25
2453 4557 2.005451 GCTGGATAAGTCACAGTGCAG 58.995 52.381 0.00 0.00 34.79 4.41
2454 4558 1.339055 GGCTGGATAAGTCACAGTGCA 60.339 52.381 0.00 0.00 34.79 4.57
2455 4559 1.373570 GGCTGGATAAGTCACAGTGC 58.626 55.000 0.00 0.00 34.79 4.40
2456 4560 1.645034 CGGCTGGATAAGTCACAGTG 58.355 55.000 0.00 0.00 34.79 3.66
2457 4561 0.108138 GCGGCTGGATAAGTCACAGT 60.108 55.000 0.00 0.00 34.79 3.55
2458 4562 1.148157 CGCGGCTGGATAAGTCACAG 61.148 60.000 0.00 0.00 35.40 3.66
2459 4563 1.153647 CGCGGCTGGATAAGTCACA 60.154 57.895 0.00 0.00 0.00 3.58
2460 4564 1.883084 CCGCGGCTGGATAAGTCAC 60.883 63.158 14.67 0.00 0.00 3.67
2461 4565 2.499205 CCGCGGCTGGATAAGTCA 59.501 61.111 14.67 0.00 0.00 3.41
2462 4566 2.967615 GCCGCGGCTGGATAAGTC 60.968 66.667 41.71 9.84 38.26 3.01
2463 4567 4.891727 CGCCGCGGCTGGATAAGT 62.892 66.667 43.60 0.00 39.32 2.24
2482 4586 4.825679 GGGTGGGGGAGGAGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
2483 4587 4.024984 TGGGTGGGGGAGGAGAGG 62.025 72.222 0.00 0.00 0.00 3.69
2484 4588 2.689034 GTGGGTGGGGGAGGAGAG 60.689 72.222 0.00 0.00 0.00 3.20
2485 4589 4.348495 GGTGGGTGGGGGAGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
2490 4594 4.645252 AATGGGGTGGGTGGGGGA 62.645 66.667 0.00 0.00 0.00 4.81
2491 4595 4.397010 CAATGGGGTGGGTGGGGG 62.397 72.222 0.00 0.00 0.00 5.40
2493 4597 4.313707 TGCAATGGGGTGGGTGGG 62.314 66.667 0.00 0.00 0.00 4.61
2494 4598 2.996734 GTGCAATGGGGTGGGTGG 60.997 66.667 0.00 0.00 0.00 4.61
2495 4599 2.996734 GGTGCAATGGGGTGGGTG 60.997 66.667 0.00 0.00 0.00 4.61
2496 4600 3.516512 TGGTGCAATGGGGTGGGT 61.517 61.111 0.00 0.00 0.00 4.51
2497 4601 2.681064 CTGGTGCAATGGGGTGGG 60.681 66.667 0.00 0.00 0.00 4.61
2498 4602 3.384532 GCTGGTGCAATGGGGTGG 61.385 66.667 0.00 0.00 39.41 4.61
2508 4612 1.946768 TGTTTCTGTAACTGCTGGTGC 59.053 47.619 0.00 0.00 37.64 5.01
2509 4613 2.032894 CGTGTTTCTGTAACTGCTGGTG 60.033 50.000 0.00 0.00 37.64 4.17
2510 4614 2.210116 CGTGTTTCTGTAACTGCTGGT 58.790 47.619 0.00 0.00 37.64 4.00
2511 4615 1.069906 GCGTGTTTCTGTAACTGCTGG 60.070 52.381 0.00 0.00 37.64 4.85
2512 4616 1.397190 CGCGTGTTTCTGTAACTGCTG 60.397 52.381 0.00 0.00 36.97 4.41
2513 4617 0.859232 CGCGTGTTTCTGTAACTGCT 59.141 50.000 0.00 0.00 36.97 4.24
2514 4618 0.110823 CCGCGTGTTTCTGTAACTGC 60.111 55.000 4.92 2.71 37.64 4.40
2515 4619 0.110823 GCCGCGTGTTTCTGTAACTG 60.111 55.000 4.92 0.00 37.64 3.16
2516 4620 1.554042 CGCCGCGTGTTTCTGTAACT 61.554 55.000 4.92 0.00 37.64 2.24
2517 4621 1.154727 CGCCGCGTGTTTCTGTAAC 60.155 57.895 4.92 0.00 37.26 2.50
2518 4622 2.311701 CCGCCGCGTGTTTCTGTAA 61.312 57.895 12.58 0.00 0.00 2.41
2519 4623 2.735478 CCGCCGCGTGTTTCTGTA 60.735 61.111 12.58 0.00 0.00 2.74
2538 4642 4.890306 GGGGGAGAGGAGAGGGCC 62.890 77.778 0.00 0.00 0.00 5.80
2539 4643 3.767044 GAGGGGGAGAGGAGAGGGC 62.767 73.684 0.00 0.00 0.00 5.19
2540 4644 2.018086 AGAGGGGGAGAGGAGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
2541 4645 1.292941 TGAGAGGGGGAGAGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69
2542 4646 0.633921 TTGAGAGGGGGAGAGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
2543 4647 1.219213 GATTGAGAGGGGGAGAGGAGA 59.781 57.143 0.00 0.00 0.00 3.71
2544 4648 1.715785 GATTGAGAGGGGGAGAGGAG 58.284 60.000 0.00 0.00 0.00 3.69
2545 4649 3.957188 GATTGAGAGGGGGAGAGGA 57.043 57.895 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.