Multiple sequence alignment - TraesCS2D01G398600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G398600 chr2D 100.000 7278 0 0 1 7278 511687028 511694305 0.000000e+00 13441.0
1 TraesCS2D01G398600 chr2B 90.340 2443 134 32 4000 6399 600742950 600745333 0.000000e+00 3110.0
2 TraesCS2D01G398600 chr2B 92.218 2223 109 14 872 3051 600739925 600742126 0.000000e+00 3088.0
3 TraesCS2D01G398600 chr2B 94.549 899 21 10 1 875 34583572 34584466 0.000000e+00 1363.0
4 TraesCS2D01G398600 chr2B 87.032 802 59 15 3189 3986 600742211 600742971 0.000000e+00 863.0
5 TraesCS2D01G398600 chr2B 84.749 918 79 23 6399 7278 600745361 600746255 0.000000e+00 863.0
6 TraesCS2D01G398600 chr2B 87.461 646 60 19 5 646 79359742 79360370 0.000000e+00 725.0
7 TraesCS2D01G398600 chr2B 86.777 121 11 4 5184 5303 600744434 600744550 5.930000e-26 130.0
8 TraesCS2D01G398600 chr2A 89.872 2271 140 40 872 3069 654907158 654909411 0.000000e+00 2837.0
9 TraesCS2D01G398600 chr2A 92.918 1638 74 22 4009 5630 654910457 654912068 0.000000e+00 2344.0
10 TraesCS2D01G398600 chr2A 89.678 746 46 13 3109 3833 654909507 654910242 0.000000e+00 922.0
11 TraesCS2D01G398600 chr2A 89.110 753 28 21 5671 6399 654912152 654912874 0.000000e+00 887.0
12 TraesCS2D01G398600 chr2A 85.567 485 28 13 6399 6869 654912907 654913363 3.070000e-128 470.0
13 TraesCS2D01G398600 chr2A 85.882 340 31 12 6950 7277 654913361 654913695 5.400000e-91 346.0
14 TraesCS2D01G398600 chr2A 95.455 132 5 1 3831 3961 654910321 654910452 7.400000e-50 209.0
15 TraesCS2D01G398600 chr2A 90.164 122 8 4 5184 5303 654911940 654912059 9.780000e-34 156.0
16 TraesCS2D01G398600 chr2A 86.957 92 7 1 6191 6277 778801318 778801409 1.670000e-16 99.0
17 TraesCS2D01G398600 chr6D 94.260 906 23 16 1 881 129160046 129159145 0.000000e+00 1358.0
18 TraesCS2D01G398600 chr6D 83.824 136 21 1 1555 1689 335068120 335067985 2.130000e-25 128.0
19 TraesCS2D01G398600 chr6D 87.671 73 4 4 7012 7082 42113055 42112986 6.050000e-11 80.5
20 TraesCS2D01G398600 chr6D 91.304 46 2 1 6399 6442 335062782 335062737 2.190000e-05 62.1
21 TraesCS2D01G398600 chr3D 93.430 898 34 10 1 876 562521981 562522875 0.000000e+00 1308.0
22 TraesCS2D01G398600 chr3D 73.415 410 68 26 6850 7244 50884537 50884920 1.660000e-21 115.0
23 TraesCS2D01G398600 chr4D 97.001 667 18 2 1 667 464367796 464368460 0.000000e+00 1120.0
24 TraesCS2D01G398600 chr4D 88.351 661 59 16 2 655 393642862 393642213 0.000000e+00 778.0
25 TraesCS2D01G398600 chr4D 87.027 185 3 7 659 822 464369733 464369917 9.640000e-44 189.0
26 TraesCS2D01G398600 chr5B 93.047 676 43 3 1 676 532700034 532700705 0.000000e+00 985.0
27 TraesCS2D01G398600 chr5B 89.333 75 6 2 7008 7082 108799016 108798944 7.770000e-15 93.5
28 TraesCS2D01G398600 chr5B 84.932 73 9 2 7011 7083 463842599 463842669 1.010000e-08 73.1
29 TraesCS2D01G398600 chr5D 83.982 899 109 27 2 878 407695279 407694394 0.000000e+00 830.0
30 TraesCS2D01G398600 chr7A 82.841 880 102 29 2 856 151379200 151378345 0.000000e+00 743.0
31 TraesCS2D01G398600 chr7A 74.684 237 37 16 6851 7082 146540404 146540622 4.680000e-12 84.2
32 TraesCS2D01G398600 chr7A 74.348 230 37 15 6859 7082 146488207 146488420 2.180000e-10 78.7
33 TraesCS2D01G398600 chr7A 74.459 231 36 15 6859 7082 146590432 146590646 2.180000e-10 78.7
34 TraesCS2D01G398600 chr7A 77.600 125 26 2 1557 1680 124070546 124070423 2.820000e-09 75.0
35 TraesCS2D01G398600 chr1A 90.968 465 32 4 2502 2966 68461394 68461848 1.040000e-172 617.0
36 TraesCS2D01G398600 chr1D 88.645 273 17 9 2495 2766 69199795 69200054 3.280000e-83 320.0
37 TraesCS2D01G398600 chr1B 83.333 144 20 4 740 881 630551899 630552040 5.930000e-26 130.0
38 TraesCS2D01G398600 chr6B 83.088 136 22 1 1555 1689 485537658 485537793 9.920000e-24 122.0
39 TraesCS2D01G398600 chr6B 91.304 46 2 1 6399 6442 485542860 485542905 2.190000e-05 62.1
40 TraesCS2D01G398600 chr6A 83.206 131 22 0 1555 1685 474333562 474333432 3.570000e-23 121.0
41 TraesCS2D01G398600 chr6A 91.304 46 2 1 6399 6442 474327721 474327676 2.190000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G398600 chr2D 511687028 511694305 7277 False 13441.000 13441 100.00000 1 7278 1 chr2D.!!$F1 7277
1 TraesCS2D01G398600 chr2B 600739925 600746255 6330 False 1610.800 3110 88.22320 872 7278 5 chr2B.!!$F3 6406
2 TraesCS2D01G398600 chr2B 34583572 34584466 894 False 1363.000 1363 94.54900 1 875 1 chr2B.!!$F1 874
3 TraesCS2D01G398600 chr2B 79359742 79360370 628 False 725.000 725 87.46100 5 646 1 chr2B.!!$F2 641
4 TraesCS2D01G398600 chr2A 654907158 654913695 6537 False 1021.375 2837 89.83075 872 7277 8 chr2A.!!$F2 6405
5 TraesCS2D01G398600 chr6D 129159145 129160046 901 True 1358.000 1358 94.26000 1 881 1 chr6D.!!$R2 880
6 TraesCS2D01G398600 chr3D 562521981 562522875 894 False 1308.000 1308 93.43000 1 876 1 chr3D.!!$F2 875
7 TraesCS2D01G398600 chr4D 393642213 393642862 649 True 778.000 778 88.35100 2 655 1 chr4D.!!$R1 653
8 TraesCS2D01G398600 chr4D 464367796 464369917 2121 False 654.500 1120 92.01400 1 822 2 chr4D.!!$F1 821
9 TraesCS2D01G398600 chr5B 532700034 532700705 671 False 985.000 985 93.04700 1 676 1 chr5B.!!$F2 675
10 TraesCS2D01G398600 chr5D 407694394 407695279 885 True 830.000 830 83.98200 2 878 1 chr5D.!!$R1 876
11 TraesCS2D01G398600 chr7A 151378345 151379200 855 True 743.000 743 82.84100 2 856 1 chr7A.!!$R2 854


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 2288 0.253610 AAACTGGTTGACACCCGACA 59.746 50.000 0.00 0.0 43.49 4.35 F
1229 2625 0.034896 TCTTCTTTCTGTGGTCCGGC 59.965 55.000 0.00 0.0 0.00 6.13 F
2572 4022 0.179275 CGTGCATAATCGCCGAATCG 60.179 55.000 0.00 0.0 0.00 3.34 F
3056 4507 0.179045 AACTCGCCTGCTTCTGTGTT 60.179 50.000 0.00 0.0 0.00 3.32 F
4728 6340 0.252375 AGGGGCAACAGAATGGCAAT 60.252 50.000 0.00 0.0 46.91 3.56 F
5048 6676 1.258982 GCGTCAAATGATGTAGAGGCG 59.741 52.381 4.67 0.0 33.14 5.52 F
5581 7213 0.261991 AGATGCTTAGGACGGAGGGA 59.738 55.000 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 3230 0.250467 AACAGCTGGTTCTCGTGCAT 60.250 50.0 19.93 0.0 33.35 3.96 R
3034 4484 0.106708 ACAGAAGCAGGCGAGTTTGA 59.893 50.0 0.00 0.0 0.00 2.69 R
4116 5728 0.527565 CAACCCATGTAACCTGCAGC 59.472 55.0 8.66 0.0 0.00 5.25 R
5033 6660 0.179018 GCCCCGCCTCTACATCATTT 60.179 55.0 0.00 0.0 0.00 2.32 R
5564 7196 0.032017 ACTCCCTCCGTCCTAAGCAT 60.032 55.0 0.00 0.0 0.00 3.79 R
5929 7649 0.035725 TCAGAATGCTGCTGTCCTGG 60.036 55.0 0.00 0.0 42.01 4.45 R
6809 8592 0.179004 TGTTCACATTTCCGTGCCCT 60.179 50.0 0.00 0.0 36.80 5.19 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 262 1.545582 CTTTTTGCCATGTCCATCCGT 59.454 47.619 0.00 0.00 0.00 4.69
488 500 5.534207 TCACTTCATGGCAACTTTTCATT 57.466 34.783 0.00 0.00 37.61 2.57
529 541 4.082787 ACTGATGGCAATTTTTCGTACTGG 60.083 41.667 0.00 0.00 0.00 4.00
682 2011 6.374613 GGCCTTTTACTAGTCATAACTTTGCT 59.625 38.462 0.00 0.00 36.92 3.91
784 2135 2.210711 GGGCGATCTCCTCCCGAAT 61.211 63.158 0.93 0.00 0.00 3.34
930 2288 0.253610 AAACTGGTTGACACCCGACA 59.746 50.000 0.00 0.00 43.49 4.35
992 2350 2.346541 GGCTTTGCCCTGCCTTCTC 61.347 63.158 0.00 0.00 44.06 2.87
993 2351 2.346541 GCTTTGCCCTGCCTTCTCC 61.347 63.158 0.00 0.00 0.00 3.71
994 2352 1.381851 CTTTGCCCTGCCTTCTCCT 59.618 57.895 0.00 0.00 0.00 3.69
998 2356 2.285668 CCCTGCCTTCTCCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
1091 2484 0.676782 GACATGAACGGGTTCCCCTG 60.677 60.000 0.00 6.69 42.67 4.45
1096 2489 2.532465 GAACGGGTTCCCCTGCTACC 62.532 65.000 1.93 0.00 42.67 3.18
1155 2548 4.803908 CCGCCTTCCTCCCTTGCC 62.804 72.222 0.00 0.00 0.00 4.52
1190 2583 2.481568 TCTTACTCCACGTCGTGTAGTG 59.518 50.000 27.79 15.52 33.85 2.74
1198 2591 1.542915 ACGTCGTGTAGTGGCAACTAT 59.457 47.619 3.76 0.00 40.95 2.12
1218 2614 7.526142 ACTATTTGGGGTTTCTTCTTCTTTC 57.474 36.000 0.00 0.00 0.00 2.62
1229 2625 0.034896 TCTTCTTTCTGTGGTCCGGC 59.965 55.000 0.00 0.00 0.00 6.13
1263 2660 1.067250 GGCGTGCCTTTTCTTTGCA 59.933 52.632 2.98 0.00 0.00 4.08
1805 3246 0.390866 CTGATGCACGAGAACCAGCT 60.391 55.000 0.00 0.00 0.00 4.24
1859 3300 4.715130 CCTGTCCCTCCGGGTGGA 62.715 72.222 16.62 11.74 44.74 4.02
1980 3424 2.097038 CAAGAACGAGCTCAGCCGG 61.097 63.158 15.40 0.00 0.00 6.13
2070 3514 3.818787 CCAGTGGAGCGCATTGGC 61.819 66.667 11.47 0.00 0.00 4.52
2226 3670 1.339438 ACGAGTGCAATGGATGAGCTT 60.339 47.619 2.36 0.00 0.00 3.74
2349 3793 0.691078 TCTCACCAGCCATAGGGGTC 60.691 60.000 0.00 0.00 44.97 4.46
2406 3850 0.447801 CCGGCATTGTAAGCAGTGAC 59.552 55.000 0.00 0.00 37.05 3.67
2460 3904 2.254152 AGGTTGCCCTCATCTCACTA 57.746 50.000 0.00 0.00 35.62 2.74
2461 3905 2.769209 AGGTTGCCCTCATCTCACTAT 58.231 47.619 0.00 0.00 35.62 2.12
2462 3906 2.437281 AGGTTGCCCTCATCTCACTATG 59.563 50.000 0.00 0.00 35.62 2.23
2467 3917 1.622811 CCCTCATCTCACTATGCCCTC 59.377 57.143 0.00 0.00 0.00 4.30
2527 3977 4.405116 TGCCTGTTTTGAAATCTTGCTT 57.595 36.364 0.00 0.00 0.00 3.91
2572 4022 0.179275 CGTGCATAATCGCCGAATCG 60.179 55.000 0.00 0.00 0.00 3.34
2608 4058 0.685785 TCTCTACTGGAGCTGCAGGG 60.686 60.000 34.65 26.24 41.60 4.45
2610 4060 0.252239 TCTACTGGAGCTGCAGGGAA 60.252 55.000 34.65 20.33 0.00 3.97
2784 4234 3.820425 CCTGTTAGGGAGGTGGCA 58.180 61.111 0.00 0.00 0.00 4.92
2871 4321 0.918799 TGGGAATGGAGCAAGGCCTA 60.919 55.000 5.16 0.00 0.00 3.93
2945 4395 0.394352 GTGGTGCAAGATACCCCCAG 60.394 60.000 0.00 0.00 37.40 4.45
2990 4440 5.784177 TCCTCTCTACATTCACTTGTTCAC 58.216 41.667 0.00 0.00 0.00 3.18
3032 4482 0.516877 TGACAGCAATGTTAGCACGC 59.483 50.000 0.00 0.00 0.00 5.34
3034 4484 0.606401 ACAGCAATGTTAGCACGCCT 60.606 50.000 0.00 0.00 0.00 5.52
3056 4507 0.179045 AACTCGCCTGCTTCTGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
3061 4512 1.267806 CGCCTGCTTCTGTGTTCATTT 59.732 47.619 0.00 0.00 0.00 2.32
3069 4520 8.391106 CCTGCTTCTGTGTTCATTTATTAGTAC 58.609 37.037 0.00 0.00 0.00 2.73
3070 4521 8.263940 TGCTTCTGTGTTCATTTATTAGTACC 57.736 34.615 0.00 0.00 0.00 3.34
3073 4524 9.436957 CTTCTGTGTTCATTTATTAGTACCAGT 57.563 33.333 0.00 0.00 0.00 4.00
3075 4526 9.431887 TCTGTGTTCATTTATTAGTACCAGTTC 57.568 33.333 0.00 0.00 0.00 3.01
3078 4529 8.175716 GTGTTCATTTATTAGTACCAGTTCTGC 58.824 37.037 0.00 0.00 0.00 4.26
3079 4530 7.880713 TGTTCATTTATTAGTACCAGTTCTGCA 59.119 33.333 0.00 0.00 0.00 4.41
3080 4531 8.893727 GTTCATTTATTAGTACCAGTTCTGCAT 58.106 33.333 0.00 0.00 0.00 3.96
3081 4532 8.437360 TCATTTATTAGTACCAGTTCTGCATG 57.563 34.615 0.00 0.00 0.00 4.06
3082 4533 8.264347 TCATTTATTAGTACCAGTTCTGCATGA 58.736 33.333 0.00 0.00 0.00 3.07
3083 4534 7.843490 TTTATTAGTACCAGTTCTGCATGAC 57.157 36.000 0.00 0.00 0.00 3.06
3084 4535 2.770164 AGTACCAGTTCTGCATGACC 57.230 50.000 0.00 0.00 0.00 4.02
3085 4536 1.977854 AGTACCAGTTCTGCATGACCA 59.022 47.619 0.00 0.00 0.00 4.02
3086 4537 2.076863 GTACCAGTTCTGCATGACCAC 58.923 52.381 0.00 0.00 0.00 4.16
3087 4538 0.473755 ACCAGTTCTGCATGACCACA 59.526 50.000 0.00 0.00 0.00 4.17
3088 4539 1.074405 ACCAGTTCTGCATGACCACAT 59.926 47.619 0.00 0.00 37.19 3.21
3105 4556 6.373495 TGACCACATGAGAATGATCTTTTCAG 59.627 38.462 0.00 6.59 37.89 3.02
3106 4557 6.479006 ACCACATGAGAATGATCTTTTCAGA 58.521 36.000 0.00 0.00 37.89 3.27
3107 4558 6.944290 ACCACATGAGAATGATCTTTTCAGAA 59.056 34.615 0.00 0.00 37.89 3.02
3135 4642 3.781079 TGCAAGTTTGTTCCAGTTCTG 57.219 42.857 0.00 0.00 0.00 3.02
3139 4646 4.261572 GCAAGTTTGTTCCAGTTCTGCATA 60.262 41.667 0.00 0.00 0.00 3.14
3168 4675 5.679734 TGAGAATGTTCTTTTCAGAGTGC 57.320 39.130 0.00 0.00 37.73 4.40
3173 4680 7.550712 AGAATGTTCTTTTCAGAGTGCTTTTT 58.449 30.769 0.00 0.00 32.55 1.94
3174 4681 7.704047 AGAATGTTCTTTTCAGAGTGCTTTTTC 59.296 33.333 0.00 0.00 32.55 2.29
3202 4709 8.995220 GTTGGTTTAGTGTGTTATTGACTGATA 58.005 33.333 0.00 0.00 0.00 2.15
3288 4795 2.521708 GTTGCAAGCCCACCACCT 60.522 61.111 0.00 0.00 0.00 4.00
3313 4820 4.360563 AGTTAGGTAATCGATTGTCAGCG 58.639 43.478 20.87 0.00 0.00 5.18
3316 4823 1.859080 GGTAATCGATTGTCAGCGGAC 59.141 52.381 20.87 10.32 44.57 4.79
3393 4902 2.224354 CCCAAGCATGTGCCTTTTCTTT 60.224 45.455 0.57 0.00 43.38 2.52
3411 4920 9.455847 CTTTTCTTTGTTTAATCTTGAGTCCAG 57.544 33.333 0.00 0.00 0.00 3.86
3420 4929 8.621286 GTTTAATCTTGAGTCCAGTTCTTGAAA 58.379 33.333 0.00 0.00 0.00 2.69
3427 4936 5.163794 TGAGTCCAGTTCTTGAAACGAAAAC 60.164 40.000 0.00 0.00 0.00 2.43
3451 4960 6.173339 CCCTATACTAACTGCCCACAATATG 58.827 44.000 0.00 0.00 0.00 1.78
3580 5091 5.539582 TTTGCACATCTAATTCACGTACC 57.460 39.130 0.00 0.00 0.00 3.34
3637 5148 2.849943 ACAAGGGGTTATGTCTGCCATA 59.150 45.455 0.00 0.00 34.86 2.74
3669 5180 2.359107 CACAGGCCGTGCATCAGT 60.359 61.111 13.44 0.00 39.19 3.41
3670 5181 2.359107 ACAGGCCGTGCATCAGTG 60.359 61.111 0.00 0.00 0.00 3.66
3697 5208 3.244215 TGAAGAAGGATCAGCTGTTCGTT 60.244 43.478 25.16 25.16 0.00 3.85
3733 5262 7.175990 TGTTATGTGGTTTCCTGTTTATCTTCC 59.824 37.037 0.00 0.00 0.00 3.46
3738 5267 5.074515 TGGTTTCCTGTTTATCTTCCCTTCT 59.925 40.000 0.00 0.00 0.00 2.85
3762 5291 5.131168 CGACTCATCGTTTGTTGATTAGG 57.869 43.478 0.00 0.00 43.66 2.69
3856 5467 8.964476 ACAATGTAGGAGTTCATAATAGGTTG 57.036 34.615 0.00 0.00 0.00 3.77
3936 5548 6.201997 ACTTGGTCAAAATATTTCGGCAAAAC 59.798 34.615 0.10 0.00 0.00 2.43
3961 5573 9.554724 ACGTAAAAATATGATTTGCTAACACTG 57.445 29.630 0.00 0.00 0.00 3.66
3962 5574 8.523464 CGTAAAAATATGATTTGCTAACACTGC 58.477 33.333 0.00 0.00 0.00 4.40
3966 5578 9.520204 AAAATATGATTTGCTAACACTGCATAC 57.480 29.630 0.00 0.00 40.34 2.39
3967 5579 4.963276 TGATTTGCTAACACTGCATACC 57.037 40.909 0.00 0.00 40.34 2.73
3968 5580 4.331108 TGATTTGCTAACACTGCATACCA 58.669 39.130 0.00 0.00 40.34 3.25
3981 5593 7.617225 ACACTGCATACCAAATACTTACACTA 58.383 34.615 0.00 0.00 0.00 2.74
3982 5594 7.764443 ACACTGCATACCAAATACTTACACTAG 59.236 37.037 0.00 0.00 0.00 2.57
3983 5595 7.764443 CACTGCATACCAAATACTTACACTAGT 59.236 37.037 0.00 0.00 0.00 2.57
3984 5596 7.764443 ACTGCATACCAAATACTTACACTAGTG 59.236 37.037 21.44 21.44 0.00 2.74
3985 5597 7.617225 TGCATACCAAATACTTACACTAGTGT 58.383 34.615 30.13 30.13 46.87 3.55
3986 5598 8.098286 TGCATACCAAATACTTACACTAGTGTT 58.902 33.333 32.15 17.80 41.83 3.32
3987 5599 8.601476 GCATACCAAATACTTACACTAGTGTTC 58.399 37.037 32.15 2.40 41.83 3.18
3988 5600 9.095065 CATACCAAATACTTACACTAGTGTTCC 57.905 37.037 32.15 0.00 41.83 3.62
3989 5601 7.069877 ACCAAATACTTACACTAGTGTTCCA 57.930 36.000 32.15 13.27 41.83 3.53
3990 5602 7.159372 ACCAAATACTTACACTAGTGTTCCAG 58.841 38.462 32.15 25.00 41.83 3.86
3991 5603 6.092259 CCAAATACTTACACTAGTGTTCCAGC 59.908 42.308 32.15 0.00 41.83 4.85
3992 5604 5.995565 ATACTTACACTAGTGTTCCAGCA 57.004 39.130 32.15 16.93 41.83 4.41
3993 5605 4.682778 ACTTACACTAGTGTTCCAGCAA 57.317 40.909 32.15 18.19 41.83 3.91
3994 5606 5.031066 ACTTACACTAGTGTTCCAGCAAA 57.969 39.130 32.15 17.52 41.83 3.68
3995 5607 5.433526 ACTTACACTAGTGTTCCAGCAAAA 58.566 37.500 32.15 16.84 41.83 2.44
3996 5608 5.883673 ACTTACACTAGTGTTCCAGCAAAAA 59.116 36.000 32.15 16.17 41.83 1.94
4062 5674 2.424557 CACTGCAGAGCTTGAGATTGT 58.575 47.619 23.35 0.00 0.00 2.71
4105 5717 3.061295 CACTTACGTGCTAACAGATGCAG 59.939 47.826 0.00 0.00 40.06 4.41
4116 5728 5.734498 GCTAACAGATGCAGTTGAATTTACG 59.266 40.000 7.19 0.00 0.00 3.18
4149 5761 8.823818 GTTACATGGGTTGAACATACAGTATAC 58.176 37.037 0.00 0.00 0.00 1.47
4257 5869 1.473965 CGCCAGTATGACTGCTTGGAT 60.474 52.381 0.89 0.00 44.63 3.41
4304 5916 9.347934 CTCGTCAGGTACAGAAATATGATAATC 57.652 37.037 0.00 0.00 0.00 1.75
4330 5942 5.620654 GCAACATCTATGTGACATGCTTTGT 60.621 40.000 8.61 4.14 41.61 2.83
4643 6255 3.819368 TCAACTTCCTGTGCAATGAGAA 58.181 40.909 0.00 0.00 0.00 2.87
4647 6259 3.319122 ACTTCCTGTGCAATGAGAAAACC 59.681 43.478 0.00 0.00 0.00 3.27
4650 6262 1.879380 CTGTGCAATGAGAAAACCCGA 59.121 47.619 0.00 0.00 0.00 5.14
4728 6340 0.252375 AGGGGCAACAGAATGGCAAT 60.252 50.000 0.00 0.00 46.91 3.56
4871 6487 5.129155 AGTGATCTAGAAGCTGAGCTCATTT 59.871 40.000 18.63 14.73 38.25 2.32
4907 6525 4.661222 TGGGAACAATGCATCACTTTAGA 58.339 39.130 0.00 0.00 37.44 2.10
5033 6660 2.327343 GCATTGGCTCTGTGCGTCA 61.327 57.895 0.00 0.00 44.05 4.35
5048 6676 1.258982 GCGTCAAATGATGTAGAGGCG 59.741 52.381 4.67 0.00 33.14 5.52
5120 6748 2.220824 CGAATGAAGCGTGTGAAGTTGA 59.779 45.455 0.00 0.00 0.00 3.18
5166 6796 1.615392 AGATGTTTTCACCAGCCTTGC 59.385 47.619 0.00 0.00 0.00 4.01
5337 6968 6.502136 AACTAGCATAGAACTTGAAAAGGC 57.498 37.500 0.00 0.00 45.75 4.35
5349 6980 5.902613 CTTGAAAAGGCAATGGTCAGATA 57.097 39.130 0.00 0.00 41.27 1.98
5382 7013 6.319658 TGGAGGAGAAATATGAAACAGCAATC 59.680 38.462 0.00 0.00 0.00 2.67
5383 7014 6.369059 AGGAGAAATATGAAACAGCAATCG 57.631 37.500 0.00 0.00 0.00 3.34
5397 7028 4.764823 ACAGCAATCGTTATTTTCTTGGGA 59.235 37.500 0.00 0.00 0.00 4.37
5402 7033 2.158058 TCGTTATTTTCTTGGGAACGCG 59.842 45.455 3.53 3.53 41.89 6.01
5419 7050 1.349234 GCGCCCAAATGTGTCATTTC 58.651 50.000 0.00 0.00 0.00 2.17
5449 7080 6.060788 AGAAGAAAACAGCAAGAGACTGAAT 58.939 36.000 0.00 0.00 38.55 2.57
5481 7112 8.732746 AGTAAATTAGGATGTGTGTTGGTATC 57.267 34.615 0.00 0.00 0.00 2.24
5484 7115 3.973206 AGGATGTGTGTTGGTATCGAA 57.027 42.857 0.00 0.00 0.00 3.71
5485 7116 3.861840 AGGATGTGTGTTGGTATCGAAG 58.138 45.455 0.00 0.00 0.00 3.79
5487 7118 4.000988 GGATGTGTGTTGGTATCGAAGTT 58.999 43.478 0.00 0.00 0.00 2.66
5488 7119 4.092968 GGATGTGTGTTGGTATCGAAGTTC 59.907 45.833 0.00 0.00 0.00 3.01
5489 7120 4.330944 TGTGTGTTGGTATCGAAGTTCT 57.669 40.909 0.56 0.00 0.00 3.01
5490 7121 4.699637 TGTGTGTTGGTATCGAAGTTCTT 58.300 39.130 0.56 0.00 0.00 2.52
5491 7122 5.120399 TGTGTGTTGGTATCGAAGTTCTTT 58.880 37.500 0.56 0.00 0.00 2.52
5492 7123 5.587043 TGTGTGTTGGTATCGAAGTTCTTTT 59.413 36.000 0.56 0.00 0.00 2.27
5493 7124 6.134061 GTGTGTTGGTATCGAAGTTCTTTTC 58.866 40.000 0.56 0.00 0.00 2.29
5494 7125 5.237779 TGTGTTGGTATCGAAGTTCTTTTCC 59.762 40.000 0.56 0.00 0.00 3.13
5495 7126 5.237779 GTGTTGGTATCGAAGTTCTTTTCCA 59.762 40.000 0.56 2.47 0.00 3.53
5512 7143 8.885494 TCTTTTCCAAAACCAAATTAGATGTG 57.115 30.769 0.00 0.00 0.00 3.21
5528 7159 4.579869 AGATGTGCTTTTAGGATTCGTGT 58.420 39.130 0.00 0.00 0.00 4.49
5550 7182 5.762711 TGTAGTCAAGCTTGAATTACTGCAA 59.237 36.000 31.71 16.65 39.21 4.08
5572 7204 5.741388 ATTCGTGCTTTTAGATGCTTAGG 57.259 39.130 0.00 0.00 0.00 2.69
5573 7205 4.465632 TCGTGCTTTTAGATGCTTAGGA 57.534 40.909 0.00 0.00 0.00 2.94
5574 7206 4.181578 TCGTGCTTTTAGATGCTTAGGAC 58.818 43.478 0.00 0.00 0.00 3.85
5575 7207 3.000322 CGTGCTTTTAGATGCTTAGGACG 60.000 47.826 0.00 0.00 42.48 4.79
5576 7208 3.309954 GTGCTTTTAGATGCTTAGGACGG 59.690 47.826 0.00 0.00 0.00 4.79
5577 7209 3.196901 TGCTTTTAGATGCTTAGGACGGA 59.803 43.478 0.00 0.00 0.00 4.69
5578 7210 3.804873 GCTTTTAGATGCTTAGGACGGAG 59.195 47.826 0.00 0.00 0.00 4.63
5579 7211 4.372656 CTTTTAGATGCTTAGGACGGAGG 58.627 47.826 0.00 0.00 0.00 4.30
5580 7212 1.996798 TAGATGCTTAGGACGGAGGG 58.003 55.000 0.00 0.00 0.00 4.30
5581 7213 0.261991 AGATGCTTAGGACGGAGGGA 59.738 55.000 0.00 0.00 0.00 4.20
5582 7214 0.676736 GATGCTTAGGACGGAGGGAG 59.323 60.000 0.00 0.00 0.00 4.30
5621 7253 1.798813 AGTGCTCGAAATCAAACGTCC 59.201 47.619 0.00 0.00 0.00 4.79
5623 7255 2.159627 GTGCTCGAAATCAAACGTCCAT 59.840 45.455 0.00 0.00 0.00 3.41
5626 7258 5.233476 GTGCTCGAAATCAAACGTCCATATA 59.767 40.000 0.00 0.00 0.00 0.86
5627 7259 5.989168 TGCTCGAAATCAAACGTCCATATAT 59.011 36.000 0.00 0.00 0.00 0.86
5628 7260 6.073819 TGCTCGAAATCAAACGTCCATATATG 60.074 38.462 5.68 5.68 0.00 1.78
5631 7263 8.426881 TCGAAATCAAACGTCCATATATGAAA 57.573 30.769 14.54 0.00 0.00 2.69
5632 7264 8.884726 TCGAAATCAAACGTCCATATATGAAAA 58.115 29.630 14.54 0.00 0.00 2.29
5634 7266 9.781834 GAAATCAAACGTCCATATATGAAAACA 57.218 29.630 14.54 0.00 0.00 2.83
5635 7267 9.787532 AAATCAAACGTCCATATATGAAAACAG 57.212 29.630 14.54 8.13 0.00 3.16
5636 7268 6.781138 TCAAACGTCCATATATGAAAACAGC 58.219 36.000 14.54 0.00 0.00 4.40
5637 7269 6.372937 TCAAACGTCCATATATGAAAACAGCA 59.627 34.615 14.54 0.00 0.00 4.41
5639 7271 6.363577 ACGTCCATATATGAAAACAGCAAG 57.636 37.500 14.54 0.00 0.00 4.01
5640 7272 5.296780 ACGTCCATATATGAAAACAGCAAGG 59.703 40.000 14.54 0.00 0.00 3.61
5641 7273 5.523369 GTCCATATATGAAAACAGCAAGGC 58.477 41.667 14.54 0.00 0.00 4.35
5642 7274 5.300286 GTCCATATATGAAAACAGCAAGGCT 59.700 40.000 14.54 0.00 40.77 4.58
5643 7275 5.532406 TCCATATATGAAAACAGCAAGGCTC 59.468 40.000 14.54 0.00 36.40 4.70
5644 7276 5.446709 CATATATGAAAACAGCAAGGCTCG 58.553 41.667 6.92 0.00 36.40 5.03
5645 7277 1.896220 ATGAAAACAGCAAGGCTCGA 58.104 45.000 0.00 0.00 36.40 4.04
5646 7278 1.229428 TGAAAACAGCAAGGCTCGAG 58.771 50.000 8.45 8.45 36.40 4.04
5647 7279 1.202639 TGAAAACAGCAAGGCTCGAGA 60.203 47.619 18.75 0.00 36.40 4.04
5648 7280 2.079925 GAAAACAGCAAGGCTCGAGAT 58.920 47.619 18.75 0.00 36.40 2.75
5649 7281 1.731720 AAACAGCAAGGCTCGAGATC 58.268 50.000 18.75 7.39 36.40 2.75
5650 7282 0.610174 AACAGCAAGGCTCGAGATCA 59.390 50.000 18.75 0.00 36.40 2.92
5651 7283 0.610174 ACAGCAAGGCTCGAGATCAA 59.390 50.000 18.75 0.00 36.40 2.57
5652 7284 1.002430 ACAGCAAGGCTCGAGATCAAA 59.998 47.619 18.75 0.00 36.40 2.69
5653 7285 2.286872 CAGCAAGGCTCGAGATCAAAT 58.713 47.619 18.75 0.00 36.40 2.32
5654 7286 2.031807 CAGCAAGGCTCGAGATCAAATG 59.968 50.000 18.75 6.66 36.40 2.32
5686 7373 6.446781 AATAATTCATGCAGTCAAGTGGAG 57.553 37.500 0.00 0.00 0.00 3.86
5707 7394 6.543465 TGGAGACATATATGAAAACAGCAAGG 59.457 38.462 19.63 0.00 33.40 3.61
5785 7477 4.160065 TGTGCCATTTTGGGTGATCATAAG 59.840 41.667 0.00 0.00 38.19 1.73
5796 7492 6.840527 TGGGTGATCATAAGCATCTAATTGA 58.159 36.000 0.00 0.00 0.00 2.57
5823 7519 4.749245 AACCTCATCGTGTTGTTTGATC 57.251 40.909 0.00 0.00 0.00 2.92
5824 7520 3.738982 ACCTCATCGTGTTGTTTGATCA 58.261 40.909 0.00 0.00 0.00 2.92
5848 7544 3.797039 TCTGGCTTCAGGATGTTAATCG 58.203 45.455 0.00 0.00 38.96 3.34
5866 7577 2.426522 TCGTGCTTGATTTCTTCCTGG 58.573 47.619 0.00 0.00 0.00 4.45
5890 7601 4.523173 CCTTCCTTTTTCTTACCTCAACCC 59.477 45.833 0.00 0.00 0.00 4.11
5929 7649 2.917227 CAGGCCCCAAACACCCAC 60.917 66.667 0.00 0.00 0.00 4.61
6121 7841 3.371063 ATGTCTGGCGACGACGGT 61.371 61.111 9.87 0.00 43.21 4.83
6133 7853 0.387929 ACGACGGTCACAAGACATGT 59.612 50.000 9.10 0.00 46.80 3.21
6292 8012 1.153667 CTGAGCGAGCTTGGAGACC 60.154 63.158 2.37 0.00 0.00 3.85
6340 8060 2.047179 GCAGACGGTGAAGGGTCC 60.047 66.667 0.00 0.00 33.66 4.46
6342 8062 1.255667 GCAGACGGTGAAGGGTCCTA 61.256 60.000 0.00 0.00 33.66 2.94
6343 8063 1.263356 CAGACGGTGAAGGGTCCTAA 58.737 55.000 0.00 0.00 33.66 2.69
6447 8200 1.475403 CTTCTCCCGGCTGTTCTCTA 58.525 55.000 0.00 0.00 0.00 2.43
6453 8206 0.179073 CCGGCTGTTCTCTACCATGG 60.179 60.000 11.19 11.19 0.00 3.66
6557 8310 5.066505 GGTAGCTATGAGGTTCCATGTTTTG 59.933 44.000 0.00 0.00 33.95 2.44
6559 8312 3.131046 GCTATGAGGTTCCATGTTTTGGG 59.869 47.826 0.00 0.00 46.45 4.12
6560 8313 2.008242 TGAGGTTCCATGTTTTGGGG 57.992 50.000 0.00 0.00 46.45 4.96
6564 8317 4.202727 TGAGGTTCCATGTTTTGGGGATAA 60.203 41.667 0.00 0.00 46.45 1.75
6605 8358 1.092345 GGAACTCGCTCTGAATGGCC 61.092 60.000 0.00 0.00 0.00 5.36
6653 8406 2.087646 CTTTTGAGGCAGCCTTAGGTC 58.912 52.381 17.46 2.56 31.76 3.85
6679 8432 5.052693 AGAATGGTATCCAGCAAGCAATA 57.947 39.130 0.00 0.00 36.75 1.90
6680 8433 5.068636 AGAATGGTATCCAGCAAGCAATAG 58.931 41.667 0.00 0.00 36.75 1.73
6681 8434 3.931907 TGGTATCCAGCAAGCAATAGT 57.068 42.857 0.00 0.00 0.00 2.12
6682 8435 3.808728 TGGTATCCAGCAAGCAATAGTC 58.191 45.455 0.00 0.00 0.00 2.59
6683 8436 3.199727 TGGTATCCAGCAAGCAATAGTCA 59.800 43.478 0.00 0.00 0.00 3.41
6686 8439 3.920231 TCCAGCAAGCAATAGTCATCT 57.080 42.857 0.00 0.00 0.00 2.90
6687 8440 5.557576 ATCCAGCAAGCAATAGTCATCTA 57.442 39.130 0.00 0.00 0.00 1.98
6695 8450 8.428063 AGCAAGCAATAGTCATCTACTAGAAAT 58.572 33.333 0.00 0.00 43.90 2.17
6732 8494 3.562141 TGTTGTTTTGTCATGTACTCCCG 59.438 43.478 0.00 0.00 0.00 5.14
6748 8510 1.200484 TCCCGCCGTTTCAAAATAAGC 59.800 47.619 0.00 0.00 0.00 3.09
6752 8514 1.902504 GCCGTTTCAAAATAAGCGTCG 59.097 47.619 0.00 0.00 32.02 5.12
6782 8559 1.993956 TCCACCACACTCATTTTGGG 58.006 50.000 0.00 0.00 34.41 4.12
6793 8570 1.065709 TCATTTTGGGACGTAGGGAGC 60.066 52.381 0.00 0.00 0.00 4.70
6869 8652 3.260884 TGGGACATGGAGTTTCTACACTC 59.739 47.826 0.00 0.00 42.34 3.51
6878 8661 5.221722 TGGAGTTTCTACACTCAGCTCAAAT 60.222 40.000 3.39 0.00 44.53 2.32
6892 8679 2.858344 GCTCAAATGCATCATGAACAGC 59.142 45.455 14.07 5.31 0.00 4.40
6895 8682 4.884247 TCAAATGCATCATGAACAGCAAA 58.116 34.783 20.08 7.82 40.76 3.68
6896 8683 5.298347 TCAAATGCATCATGAACAGCAAAA 58.702 33.333 20.08 7.55 40.76 2.44
6897 8684 5.935206 TCAAATGCATCATGAACAGCAAAAT 59.065 32.000 20.08 10.18 40.76 1.82
6898 8685 7.097834 TCAAATGCATCATGAACAGCAAAATA 58.902 30.769 20.08 8.07 40.76 1.40
6899 8686 7.603024 TCAAATGCATCATGAACAGCAAAATAA 59.397 29.630 20.08 7.03 40.76 1.40
6900 8687 7.908827 AATGCATCATGAACAGCAAAATAAA 57.091 28.000 20.08 1.25 40.76 1.40
6901 8688 7.908827 ATGCATCATGAACAGCAAAATAAAA 57.091 28.000 20.08 0.67 40.76 1.52
6902 8689 7.725818 TGCATCATGAACAGCAAAATAAAAA 57.274 28.000 15.69 0.00 33.48 1.94
7025 8812 2.474735 CCGGGCAAAAGAAACAAAATCG 59.525 45.455 0.00 0.00 0.00 3.34
7035 8822 5.051891 AGAAACAAAATCGATGCTCCAAG 57.948 39.130 0.00 0.00 0.00 3.61
7040 8828 6.029346 ACAAAATCGATGCTCCAAGAAAAT 57.971 33.333 0.00 0.00 0.00 1.82
7077 8865 7.933033 AGCATTTTGGAGTGTTGATTTTGTTAT 59.067 29.630 0.00 0.00 0.00 1.89
7098 8886 3.396260 TTTTTACCGAGACCTCCACAG 57.604 47.619 0.00 0.00 0.00 3.66
7103 8891 1.607801 CCGAGACCTCCACAGATGCA 61.608 60.000 0.00 0.00 0.00 3.96
7110 8898 3.499338 ACCTCCACAGATGCAATTTCAA 58.501 40.909 0.00 0.00 0.00 2.69
7113 8901 4.482386 CTCCACAGATGCAATTTCAACAG 58.518 43.478 0.00 0.00 0.00 3.16
7114 8902 3.890756 TCCACAGATGCAATTTCAACAGT 59.109 39.130 0.00 0.00 0.00 3.55
7115 8903 4.341806 TCCACAGATGCAATTTCAACAGTT 59.658 37.500 0.00 0.00 0.00 3.16
7116 8904 5.051816 CCACAGATGCAATTTCAACAGTTT 58.948 37.500 0.00 0.00 0.00 2.66
7117 8905 5.050634 CCACAGATGCAATTTCAACAGTTTG 60.051 40.000 0.00 0.00 0.00 2.93
7118 8906 4.508861 ACAGATGCAATTTCAACAGTTTGC 59.491 37.500 0.00 0.62 43.60 3.68
7121 8909 2.602211 TGCAATTTCAACAGTTTGCACG 59.398 40.909 5.63 0.00 46.76 5.34
7210 9007 7.781548 TTTTCAGATTTTACTATCCGTAGCC 57.218 36.000 0.00 0.00 0.00 3.93
7239 9036 5.745312 TTTGAGCTCAGGATTAGAAGACA 57.255 39.130 17.43 0.00 0.00 3.41
7263 9067 8.885722 ACAACTTTCGTAAACTCTGTTCATAAA 58.114 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 197 5.617528 AATGCATTTAATTGCCATGGAGA 57.382 34.783 18.40 2.33 42.06 3.71
192 198 6.687081 AAAATGCATTTAATTGCCATGGAG 57.313 33.333 24.35 0.00 42.06 3.86
255 262 5.948758 TGTAATGGCCATGACAAACATTCTA 59.051 36.000 30.67 6.72 37.07 2.10
608 631 5.046448 TGCCATGGACTTTTGCAATTCTATT 60.046 36.000 18.40 0.00 0.00 1.73
784 2135 1.202758 AGCATGGACCGAACAAACTCA 60.203 47.619 0.00 0.00 0.00 3.41
849 2206 0.801067 CGATGACTCCCGAACGTTCC 60.801 60.000 22.07 7.79 0.00 3.62
864 2221 4.741185 TCCGTTAAAATATGGACGTCGATG 59.259 41.667 21.67 2.26 33.95 3.84
992 2350 2.124151 CCCTCGGCATTTGGGAGG 60.124 66.667 0.00 0.00 45.56 4.30
993 2351 2.998097 TCCCTCGGCATTTGGGAG 59.002 61.111 0.00 0.00 44.37 4.30
998 2356 1.257750 GCCCTTTTCCCTCGGCATTT 61.258 55.000 0.00 0.00 41.25 2.32
1024 2411 0.872388 CCGTCGAAGAAACCCCAAAG 59.128 55.000 0.00 0.00 39.69 2.77
1143 2536 3.566016 TACCGGGGCAAGGGAGGAA 62.566 63.158 6.32 0.00 0.00 3.36
1190 2583 3.832490 AGAAGAAACCCCAAATAGTTGCC 59.168 43.478 0.00 0.00 33.01 4.52
1198 2591 5.127031 CACAGAAAGAAGAAGAAACCCCAAA 59.873 40.000 0.00 0.00 0.00 3.28
1229 2625 2.742372 CCTTTCGCAGTCACCGGG 60.742 66.667 6.32 0.00 0.00 5.73
1234 2630 3.345808 GCACGCCTTTCGCAGTCA 61.346 61.111 0.00 0.00 43.23 3.41
1261 2658 0.740737 CACGGGAAAGGGATCAATGC 59.259 55.000 0.00 0.00 0.00 3.56
1263 2660 0.395724 GCCACGGGAAAGGGATCAAT 60.396 55.000 0.00 0.00 0.00 2.57
1328 2734 2.509336 GAGGTGGCGTGTCATCGG 60.509 66.667 0.00 0.00 0.00 4.18
1486 2892 2.234896 TGAAGGGACGTATGGGTACA 57.765 50.000 0.00 0.00 0.00 2.90
1699 3131 1.142778 GATCGAGAGTGTTGGAGCGC 61.143 60.000 0.00 0.00 0.00 5.92
1789 3230 0.250467 AACAGCTGGTTCTCGTGCAT 60.250 50.000 19.93 0.00 33.35 3.96
1805 3246 1.375396 CCGTTCTCCGCCATCAACA 60.375 57.895 0.00 0.00 34.38 3.33
2124 3568 1.604593 CACTGTTTGGCTGGAGGGG 60.605 63.158 0.00 0.00 0.00 4.79
2226 3670 0.745486 CCATCTGCGCCATCTTGACA 60.745 55.000 4.18 0.00 0.00 3.58
2355 3799 1.145377 CTCGGATACAAACCCCGGG 59.855 63.158 15.80 15.80 43.16 5.73
2452 3896 2.090267 AGAAGGGAGGGCATAGTGAGAT 60.090 50.000 0.00 0.00 0.00 2.75
2460 3904 1.604378 CAACGAGAAGGGAGGGCAT 59.396 57.895 0.00 0.00 0.00 4.40
2461 3905 3.068881 CAACGAGAAGGGAGGGCA 58.931 61.111 0.00 0.00 0.00 5.36
2462 3906 1.614241 TAGCAACGAGAAGGGAGGGC 61.614 60.000 0.00 0.00 0.00 5.19
2467 3917 1.486726 AGGGAATAGCAACGAGAAGGG 59.513 52.381 0.00 0.00 0.00 3.95
2572 4022 0.810823 AGATCTCCTCGGTCGTCGAC 60.811 60.000 17.16 17.16 43.74 4.20
2580 4030 2.778299 CTCCAGTAGAGATCTCCTCGG 58.222 57.143 19.30 14.17 46.50 4.63
2608 4058 3.304525 GCAGCAATGCACCATCTCTATTC 60.305 47.826 8.35 0.00 34.41 1.75
2610 4060 2.158652 AGCAGCAATGCACCATCTCTAT 60.159 45.455 8.35 0.00 37.25 1.98
2784 4234 4.210331 ACTGTTTGCAGAACCTGAGAAAT 58.790 39.130 1.30 0.00 45.28 2.17
2856 4306 1.228510 GGCTAGGCCTTGCTCCATT 59.771 57.895 33.16 0.00 46.69 3.16
2945 4395 0.875059 GTGTACCTTGCAGAAGCCAC 59.125 55.000 0.00 0.00 41.13 5.01
2990 4440 1.894466 TGCCAACCCAAGAACATGATG 59.106 47.619 0.00 0.00 0.00 3.07
3032 4482 0.321122 AGAAGCAGGCGAGTTTGAGG 60.321 55.000 0.00 0.00 0.00 3.86
3034 4484 0.106708 ACAGAAGCAGGCGAGTTTGA 59.893 50.000 0.00 0.00 0.00 2.69
3056 4507 8.264347 TCATGCAGAACTGGTACTAATAAATGA 58.736 33.333 3.99 0.00 0.00 2.57
3061 4512 5.423931 TGGTCATGCAGAACTGGTACTAATA 59.576 40.000 3.99 0.00 34.06 0.98
3069 4520 1.471287 CATGTGGTCATGCAGAACTGG 59.529 52.381 3.99 0.00 43.66 4.00
3070 4521 2.913777 CATGTGGTCATGCAGAACTG 57.086 50.000 0.00 0.00 43.66 3.16
3078 4529 7.148137 TGAAAAGATCATTCTCATGTGGTCATG 60.148 37.037 11.21 2.27 41.74 3.07
3079 4530 6.888088 TGAAAAGATCATTCTCATGTGGTCAT 59.112 34.615 11.21 0.00 31.50 3.06
3080 4531 6.240145 TGAAAAGATCATTCTCATGTGGTCA 58.760 36.000 11.21 0.00 31.50 4.02
3081 4532 6.596888 TCTGAAAAGATCATTCTCATGTGGTC 59.403 38.462 11.21 0.00 37.44 4.02
3082 4533 6.479006 TCTGAAAAGATCATTCTCATGTGGT 58.521 36.000 11.21 0.00 37.44 4.16
3083 4534 6.997239 TCTGAAAAGATCATTCTCATGTGG 57.003 37.500 11.21 0.00 37.44 4.17
3084 4535 7.432545 GCATTCTGAAAAGATCATTCTCATGTG 59.567 37.037 11.21 0.00 37.44 3.21
3085 4536 7.481642 GCATTCTGAAAAGATCATTCTCATGT 58.518 34.615 11.21 0.00 37.44 3.21
3086 4537 6.633234 CGCATTCTGAAAAGATCATTCTCATG 59.367 38.462 11.21 10.68 37.44 3.07
3087 4538 6.541278 TCGCATTCTGAAAAGATCATTCTCAT 59.459 34.615 11.21 1.07 37.44 2.90
3088 4539 5.876460 TCGCATTCTGAAAAGATCATTCTCA 59.124 36.000 11.21 4.80 37.44 3.27
3090 4541 6.748333 TTCGCATTCTGAAAAGATCATTCT 57.252 33.333 11.21 0.00 37.44 2.40
3091 4542 7.514747 GCATTTCGCATTCTGAAAAGATCATTC 60.515 37.037 0.00 0.00 38.68 2.67
3093 4544 5.747197 GCATTTCGCATTCTGAAAAGATCAT 59.253 36.000 0.00 0.00 38.68 2.45
3094 4545 5.097529 GCATTTCGCATTCTGAAAAGATCA 58.902 37.500 0.00 0.00 38.68 2.92
3095 4546 5.617028 GCATTTCGCATTCTGAAAAGATC 57.383 39.130 0.00 0.00 38.68 2.75
3105 4556 6.748972 TGGAACAAACTTGCATTTCGCATTC 61.749 40.000 0.00 0.00 44.66 2.67
3106 4557 4.977132 TGGAACAAACTTGCATTTCGCATT 60.977 37.500 0.00 0.00 44.66 3.56
3107 4558 3.492309 TGGAACAAACTTGCATTTCGCAT 60.492 39.130 0.00 0.00 44.66 4.73
3135 4642 5.824904 AGAACATTCTCATGTGGTTATGC 57.175 39.130 0.00 0.00 43.34 3.14
3139 4646 6.547141 TCTGAAAAGAACATTCTCATGTGGTT 59.453 34.615 0.00 0.00 43.34 3.67
3168 4675 9.581099 AATAACACACTAAACCAACTGAAAAAG 57.419 29.630 0.00 0.00 0.00 2.27
3173 4680 7.011950 CAGTCAATAACACACTAAACCAACTGA 59.988 37.037 0.00 0.00 31.83 3.41
3174 4681 7.011950 TCAGTCAATAACACACTAAACCAACTG 59.988 37.037 0.00 0.00 0.00 3.16
3202 4709 5.333299 TGTGAATACTATACAGCACGGTT 57.667 39.130 0.00 0.00 0.00 4.44
3288 4795 5.810587 GCTGACAATCGATTACCTAACTTGA 59.189 40.000 10.97 0.00 0.00 3.02
3313 4820 4.583073 ACAAATCACTTGTTTACCCTGTCC 59.417 41.667 0.00 0.00 46.49 4.02
3316 4823 5.766150 TCACAAATCACTTGTTTACCCTG 57.234 39.130 0.00 0.00 46.49 4.45
3393 4902 7.279615 TCAAGAACTGGACTCAAGATTAAACA 58.720 34.615 0.00 0.00 0.00 2.83
3411 4920 7.430992 AGTATAGGGTTTTCGTTTCAAGAAC 57.569 36.000 0.00 0.00 0.00 3.01
3420 4929 4.383444 GGGCAGTTAGTATAGGGTTTTCGT 60.383 45.833 0.00 0.00 0.00 3.85
3427 4936 4.706842 ATTGTGGGCAGTTAGTATAGGG 57.293 45.455 0.00 0.00 0.00 3.53
3451 4960 6.653273 TCTCGACAATGAGACAAATTGATC 57.347 37.500 0.00 0.00 40.01 2.92
3593 5104 5.521735 GTCAACTTATGGACAGATAGCACAG 59.478 44.000 0.00 0.00 34.22 3.66
3594 5105 5.046663 TGTCAACTTATGGACAGATAGCACA 60.047 40.000 0.00 0.00 39.00 4.57
3666 5177 3.870274 TGATCCTTCTTCAGATGCACTG 58.130 45.455 9.27 9.27 46.97 3.66
3667 5178 3.682155 GCTGATCCTTCTTCAGATGCACT 60.682 47.826 4.93 0.00 42.63 4.40
3668 5179 2.613133 GCTGATCCTTCTTCAGATGCAC 59.387 50.000 4.93 0.00 42.63 4.57
3669 5180 2.504585 AGCTGATCCTTCTTCAGATGCA 59.495 45.455 4.93 0.00 42.63 3.96
3670 5181 2.873472 CAGCTGATCCTTCTTCAGATGC 59.127 50.000 8.42 0.00 46.70 3.91
3672 5183 4.680172 CGAACAGCTGATCCTTCTTCAGAT 60.680 45.833 23.35 0.00 42.63 2.90
3673 5184 3.367806 CGAACAGCTGATCCTTCTTCAGA 60.368 47.826 23.35 0.00 42.63 3.27
3674 5185 2.928757 CGAACAGCTGATCCTTCTTCAG 59.071 50.000 23.35 4.83 42.83 3.02
3697 5208 7.336679 CAGGAAACCACATAACATGACTGATAA 59.663 37.037 0.00 0.00 0.00 1.75
3762 5291 1.317613 TCCCACACTGTTGATTGCAC 58.682 50.000 0.00 0.00 0.00 4.57
3929 5541 7.738345 AGCAAATCATATTTTTACGTTTTGCC 58.262 30.769 18.24 6.10 45.28 4.52
3936 5548 8.523464 GCAGTGTTAGCAAATCATATTTTTACG 58.477 33.333 0.00 0.00 0.00 3.18
3956 5568 6.472887 AGTGTAAGTATTTGGTATGCAGTGT 58.527 36.000 0.00 0.00 0.00 3.55
3961 5573 8.488651 AACACTAGTGTAAGTATTTGGTATGC 57.511 34.615 28.13 0.00 44.13 3.14
3962 5574 9.095065 GGAACACTAGTGTAAGTATTTGGTATG 57.905 37.037 28.13 0.00 44.13 2.39
3966 5578 6.092259 GCTGGAACACTAGTGTAAGTATTTGG 59.908 42.308 28.13 12.33 44.13 3.28
3967 5579 6.649141 TGCTGGAACACTAGTGTAAGTATTTG 59.351 38.462 28.13 13.65 44.13 2.32
3968 5580 6.765403 TGCTGGAACACTAGTGTAAGTATTT 58.235 36.000 28.13 11.32 44.13 1.40
4002 5614 9.702494 GTCAGGTACACTAGTGTAAGTATTTTT 57.298 33.333 32.02 12.25 46.33 1.94
4003 5615 8.863086 TGTCAGGTACACTAGTGTAAGTATTTT 58.137 33.333 32.02 13.13 46.33 1.82
4004 5616 8.413309 TGTCAGGTACACTAGTGTAAGTATTT 57.587 34.615 32.02 14.30 46.33 1.40
4062 5674 2.701107 CATGAATGCATGCCCAAAACA 58.299 42.857 16.68 7.34 44.76 2.83
4105 5717 2.989422 ACCTGCAGCGTAAATTCAAC 57.011 45.000 8.66 0.00 0.00 3.18
4116 5728 0.527565 CAACCCATGTAACCTGCAGC 59.472 55.000 8.66 0.00 0.00 5.25
4149 5761 1.154205 GGTGCACGGAGGATTCATCG 61.154 60.000 11.45 0.00 0.00 3.84
4230 5842 1.135139 CAGTCATACTGGCGCTGTAGT 59.865 52.381 7.64 12.29 42.35 2.73
4304 5916 3.626217 AGCATGTCACATAGATGTTGCAG 59.374 43.478 15.70 0.00 41.07 4.41
4320 5932 5.163519 GGAAGCAATACCATACAAAGCATGT 60.164 40.000 0.00 0.67 46.36 3.21
4330 5942 8.830915 TTTAATTCCAAGGAAGCAATACCATA 57.169 30.769 7.69 0.00 37.56 2.74
4643 6255 0.322546 GTCCCATTCAGCTCGGGTTT 60.323 55.000 6.87 0.00 41.12 3.27
4647 6259 0.533755 GGATGTCCCATTCAGCTCGG 60.534 60.000 0.00 0.00 34.14 4.63
4650 6262 2.158696 GCTTAGGATGTCCCATTCAGCT 60.159 50.000 0.00 0.00 37.41 4.24
4728 6340 1.681793 GCCTTCAGTAGAGATACGGCA 59.318 52.381 0.00 0.00 36.37 5.69
4871 6487 2.173782 TGTTCCCAAGACTAAAGCACCA 59.826 45.455 0.00 0.00 0.00 4.17
4935 6553 7.151999 TCAGAGCACAGAAACAAGTTTTAAA 57.848 32.000 0.00 0.00 32.11 1.52
4936 6554 6.751514 TCAGAGCACAGAAACAAGTTTTAA 57.248 33.333 0.00 0.00 32.11 1.52
5030 6657 2.213499 CCCGCCTCTACATCATTTGAC 58.787 52.381 0.00 0.00 0.00 3.18
5033 6660 0.179018 GCCCCGCCTCTACATCATTT 60.179 55.000 0.00 0.00 0.00 2.32
5048 6676 0.323451 AAAAAGGAGGATCACGCCCC 60.323 55.000 0.00 0.00 40.38 5.80
5143 6772 4.798574 CAAGGCTGGTGAAAACATCTTAC 58.201 43.478 0.00 0.00 0.00 2.34
5337 6968 9.964354 TCCTCCAATAAATATATCTGACCATTG 57.036 33.333 0.00 0.00 0.00 2.82
5382 7013 2.501881 CGCGTTCCCAAGAAAATAACG 58.498 47.619 0.00 0.00 44.18 3.18
5383 7014 2.247637 GCGCGTTCCCAAGAAAATAAC 58.752 47.619 8.43 0.00 32.58 1.89
5397 7028 1.523154 ATGACACATTTGGGCGCGTT 61.523 50.000 8.43 0.00 0.00 4.84
5402 7033 2.723124 ACGAAATGACACATTTGGGC 57.277 45.000 18.02 4.96 0.00 5.36
5419 7050 7.329717 AGTCTCTTGCTGTTTTCTTCTATTACG 59.670 37.037 0.00 0.00 0.00 3.18
5449 7080 7.913789 ACACACATCCTAATTTACTTCCTACA 58.086 34.615 0.00 0.00 0.00 2.74
5481 7112 6.902224 ATTTGGTTTTGGAAAAGAACTTCG 57.098 33.333 0.00 0.00 0.00 3.79
5484 7115 9.546428 CATCTAATTTGGTTTTGGAAAAGAACT 57.454 29.630 0.00 0.00 0.00 3.01
5485 7116 9.325198 ACATCTAATTTGGTTTTGGAAAAGAAC 57.675 29.630 0.00 0.00 0.00 3.01
5487 7118 7.440856 GCACATCTAATTTGGTTTTGGAAAAGA 59.559 33.333 0.00 0.00 0.00 2.52
5488 7119 7.442062 AGCACATCTAATTTGGTTTTGGAAAAG 59.558 33.333 0.00 0.00 0.00 2.27
5489 7120 7.278875 AGCACATCTAATTTGGTTTTGGAAAA 58.721 30.769 0.00 0.00 0.00 2.29
5490 7121 6.825610 AGCACATCTAATTTGGTTTTGGAAA 58.174 32.000 0.00 0.00 0.00 3.13
5491 7122 6.418057 AGCACATCTAATTTGGTTTTGGAA 57.582 33.333 0.00 0.00 0.00 3.53
5492 7123 6.418057 AAGCACATCTAATTTGGTTTTGGA 57.582 33.333 0.00 0.00 0.00 3.53
5493 7124 7.495135 AAAAGCACATCTAATTTGGTTTTGG 57.505 32.000 13.40 0.00 44.82 3.28
5494 7125 8.711457 CCTAAAAGCACATCTAATTTGGTTTTG 58.289 33.333 19.67 12.72 45.59 2.44
5495 7126 8.646900 TCCTAAAAGCACATCTAATTTGGTTTT 58.353 29.630 16.68 16.68 46.85 2.43
5512 7143 5.446073 GCTTGACTACACGAATCCTAAAAGC 60.446 44.000 0.00 0.00 0.00 3.51
5528 7159 7.452880 AATTGCAGTAATTCAAGCTTGACTA 57.547 32.000 28.46 18.92 33.79 2.59
5550 7182 5.294552 GTCCTAAGCATCTAAAAGCACGAAT 59.705 40.000 0.00 0.00 0.00 3.34
5553 7185 3.000322 CGTCCTAAGCATCTAAAAGCACG 60.000 47.826 0.00 0.00 0.00 5.34
5554 7186 3.309954 CCGTCCTAAGCATCTAAAAGCAC 59.690 47.826 0.00 0.00 0.00 4.40
5555 7187 3.196901 TCCGTCCTAAGCATCTAAAAGCA 59.803 43.478 0.00 0.00 0.00 3.91
5556 7188 3.793559 TCCGTCCTAAGCATCTAAAAGC 58.206 45.455 0.00 0.00 0.00 3.51
5557 7189 4.372656 CCTCCGTCCTAAGCATCTAAAAG 58.627 47.826 0.00 0.00 0.00 2.27
5558 7190 3.134081 CCCTCCGTCCTAAGCATCTAAAA 59.866 47.826 0.00 0.00 0.00 1.52
5559 7191 2.698797 CCCTCCGTCCTAAGCATCTAAA 59.301 50.000 0.00 0.00 0.00 1.85
5560 7192 2.091499 TCCCTCCGTCCTAAGCATCTAA 60.091 50.000 0.00 0.00 0.00 2.10
5561 7193 1.497716 TCCCTCCGTCCTAAGCATCTA 59.502 52.381 0.00 0.00 0.00 1.98
5563 7195 0.676736 CTCCCTCCGTCCTAAGCATC 59.323 60.000 0.00 0.00 0.00 3.91
5564 7196 0.032017 ACTCCCTCCGTCCTAAGCAT 60.032 55.000 0.00 0.00 0.00 3.79
5565 7197 0.627451 TACTCCCTCCGTCCTAAGCA 59.373 55.000 0.00 0.00 0.00 3.91
5566 7198 1.320507 CTACTCCCTCCGTCCTAAGC 58.679 60.000 0.00 0.00 0.00 3.09
5567 7199 2.732844 ACTACTCCCTCCGTCCTAAG 57.267 55.000 0.00 0.00 0.00 2.18
5568 7200 3.461085 ACATACTACTCCCTCCGTCCTAA 59.539 47.826 0.00 0.00 0.00 2.69
5569 7201 3.051581 ACATACTACTCCCTCCGTCCTA 58.948 50.000 0.00 0.00 0.00 2.94
5571 7203 2.361643 ACATACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
5572 7204 5.068636 TGATAACATACTACTCCCTCCGTC 58.931 45.833 0.00 0.00 0.00 4.79
5573 7205 5.057843 TGATAACATACTACTCCCTCCGT 57.942 43.478 0.00 0.00 0.00 4.69
5574 7206 6.390721 CATTGATAACATACTACTCCCTCCG 58.609 44.000 0.00 0.00 0.00 4.63
5575 7207 6.497259 TCCATTGATAACATACTACTCCCTCC 59.503 42.308 0.00 0.00 0.00 4.30
5576 7208 7.540474 TCCATTGATAACATACTACTCCCTC 57.460 40.000 0.00 0.00 0.00 4.30
5577 7209 7.569111 ACTTCCATTGATAACATACTACTCCCT 59.431 37.037 0.00 0.00 0.00 4.20
5578 7210 7.657761 CACTTCCATTGATAACATACTACTCCC 59.342 40.741 0.00 0.00 0.00 4.30
5579 7211 7.171678 GCACTTCCATTGATAACATACTACTCC 59.828 40.741 0.00 0.00 0.00 3.85
5580 7212 7.928706 AGCACTTCCATTGATAACATACTACTC 59.071 37.037 0.00 0.00 0.00 2.59
5581 7213 7.796054 AGCACTTCCATTGATAACATACTACT 58.204 34.615 0.00 0.00 0.00 2.57
5582 7214 7.096023 CGAGCACTTCCATTGATAACATACTAC 60.096 40.741 0.00 0.00 0.00 2.73
5621 7253 5.237127 TCGAGCCTTGCTGTTTTCATATATG 59.763 40.000 6.36 6.36 39.88 1.78
5623 7255 4.765273 TCGAGCCTTGCTGTTTTCATATA 58.235 39.130 0.00 0.00 39.88 0.86
5626 7258 1.808945 CTCGAGCCTTGCTGTTTTCAT 59.191 47.619 0.00 0.00 39.88 2.57
5627 7259 1.202639 TCTCGAGCCTTGCTGTTTTCA 60.203 47.619 7.81 0.00 39.88 2.69
5628 7260 1.512926 TCTCGAGCCTTGCTGTTTTC 58.487 50.000 7.81 0.00 39.88 2.29
5631 7263 0.610174 TGATCTCGAGCCTTGCTGTT 59.390 50.000 7.81 0.00 39.88 3.16
5632 7264 0.610174 TTGATCTCGAGCCTTGCTGT 59.390 50.000 7.81 0.00 39.88 4.40
5634 7266 2.286872 CATTTGATCTCGAGCCTTGCT 58.713 47.619 7.81 0.00 43.88 3.91
5635 7267 2.012673 ACATTTGATCTCGAGCCTTGC 58.987 47.619 7.81 0.00 0.00 4.01
5636 7268 4.691860 AAACATTTGATCTCGAGCCTTG 57.308 40.909 7.81 2.12 0.00 3.61
5637 7269 5.712152 AAAAACATTTGATCTCGAGCCTT 57.288 34.783 7.81 0.00 0.00 4.35
5686 7373 8.986477 AAAACCTTGCTGTTTTCATATATGTC 57.014 30.769 12.42 3.55 43.09 3.06
5785 7477 6.500684 TGAGGTTTTCTGTCAATTAGATGC 57.499 37.500 0.00 0.00 0.00 3.91
5796 7492 3.541632 ACAACACGATGAGGTTTTCTGT 58.458 40.909 0.00 0.00 0.00 3.41
5823 7519 5.902613 TTAACATCCTGAAGCCAGAAATG 57.097 39.130 0.00 0.00 43.02 2.32
5824 7520 5.297776 CGATTAACATCCTGAAGCCAGAAAT 59.702 40.000 0.00 0.00 43.02 2.17
5848 7544 1.203287 GGCCAGGAAGAAATCAAGCAC 59.797 52.381 0.00 0.00 0.00 4.40
5866 7577 4.022242 GGTTGAGGTAAGAAAAAGGAAGGC 60.022 45.833 0.00 0.00 0.00 4.35
5904 7623 0.039035 GTTTGGGGCCTGTCCATGTA 59.961 55.000 0.84 0.00 36.21 2.29
5929 7649 0.035725 TCAGAATGCTGCTGTCCTGG 60.036 55.000 0.00 0.00 42.01 4.45
5978 7698 1.165270 GTGTACACCACCATTGAGCC 58.835 55.000 15.42 0.00 38.18 4.70
6097 7817 1.375908 GTCGCCAGACATGCTTGGA 60.376 57.895 17.74 0.00 46.32 3.53
6292 8012 0.251430 TAGGCCAAAAAGGTTCCCCG 60.251 55.000 5.01 0.00 40.61 5.73
6340 8060 2.662156 GCGGTTCGTTCTTGACTCTTAG 59.338 50.000 0.00 0.00 0.00 2.18
6342 8062 1.499049 GCGGTTCGTTCTTGACTCTT 58.501 50.000 0.00 0.00 0.00 2.85
6343 8063 0.663568 CGCGGTTCGTTCTTGACTCT 60.664 55.000 0.00 0.00 0.00 3.24
6447 8200 2.040012 TCCAAAATGCAAATGCCATGGT 59.960 40.909 14.67 0.00 41.18 3.55
6453 8206 3.391965 TGTCTGTCCAAAATGCAAATGC 58.608 40.909 0.00 0.00 42.50 3.56
6557 8310 3.825328 AGCATCACATCTTGTTATCCCC 58.175 45.455 0.00 0.00 0.00 4.81
6559 8312 6.094603 ACAGAAAGCATCACATCTTGTTATCC 59.905 38.462 0.00 0.00 0.00 2.59
6560 8313 7.081526 ACAGAAAGCATCACATCTTGTTATC 57.918 36.000 0.00 0.00 0.00 1.75
6564 8317 4.940046 CCTACAGAAAGCATCACATCTTGT 59.060 41.667 0.00 0.00 0.00 3.16
6605 8358 2.023673 ACATATGGCCAACGGAACATG 58.976 47.619 10.96 7.43 0.00 3.21
6695 8450 9.522804 GACAAAACAACATTACAAAGGTGATTA 57.477 29.630 0.00 0.00 0.00 1.75
6701 8456 7.769272 ACATGACAAAACAACATTACAAAGG 57.231 32.000 0.00 0.00 0.00 3.11
6708 8463 5.278266 CGGGAGTACATGACAAAACAACATT 60.278 40.000 0.00 0.00 0.00 2.71
6714 8469 1.467342 GGCGGGAGTACATGACAAAAC 59.533 52.381 0.00 0.00 0.00 2.43
6716 8471 0.390603 CGGCGGGAGTACATGACAAA 60.391 55.000 0.00 0.00 0.00 2.83
6732 8494 1.902504 CGACGCTTATTTTGAAACGGC 59.097 47.619 0.00 0.00 0.00 5.68
6748 8510 2.936050 GTGGAACTAAAACCACGACG 57.064 50.000 0.00 0.00 45.16 5.12
6768 8530 2.742053 CCTACGTCCCAAAATGAGTGTG 59.258 50.000 0.00 0.00 0.00 3.82
6782 8559 0.601558 TGACTGTTGCTCCCTACGTC 59.398 55.000 0.00 0.00 0.00 4.34
6793 8570 0.599558 CCCTTGCACCATGACTGTTG 59.400 55.000 0.00 0.00 0.00 3.33
6809 8592 0.179004 TGTTCACATTTCCGTGCCCT 60.179 50.000 0.00 0.00 36.80 5.19
6816 8599 5.215160 CAGCTACTTTGTGTTCACATTTCC 58.785 41.667 6.47 0.00 0.00 3.13
6869 8652 4.104696 TGTTCATGATGCATTTGAGCTG 57.895 40.909 20.27 6.79 34.99 4.24
6878 8661 7.725818 TTTTTATTTTGCTGTTCATGATGCA 57.274 28.000 12.52 12.52 0.00 3.96
6931 8718 7.856145 ATTCAGTAATGTTTGTTGCCAAAAA 57.144 28.000 0.00 0.00 41.99 1.94
6936 8723 7.566709 CAGAAAATTCAGTAATGTTTGTTGCC 58.433 34.615 0.00 0.00 0.00 4.52
7005 8792 3.376540 TCGATTTTGTTTCTTTTGCCCG 58.623 40.909 0.00 0.00 0.00 6.13
7040 8828 8.729805 ACACTCCAAAATGCTTTCAAAAATAA 57.270 26.923 0.00 0.00 0.00 1.40
7083 8871 1.608717 GCATCTGTGGAGGTCTCGGT 61.609 60.000 0.00 0.00 0.00 4.69
7084 8872 1.142748 GCATCTGTGGAGGTCTCGG 59.857 63.158 0.00 0.00 0.00 4.63
7086 8874 2.706339 ATTGCATCTGTGGAGGTCTC 57.294 50.000 0.00 0.00 0.00 3.36
7103 8891 2.859538 CTGCGTGCAAACTGTTGAAATT 59.140 40.909 0.00 0.00 36.83 1.82
7110 8898 2.828095 TGCCTGCGTGCAAACTGT 60.828 55.556 0.00 0.00 38.56 3.55
7113 8901 1.065600 TTTCTGCCTGCGTGCAAAC 59.934 52.632 1.43 0.00 41.51 2.93
7114 8902 1.065600 GTTTCTGCCTGCGTGCAAA 59.934 52.632 1.43 0.00 41.51 3.68
7115 8903 2.721231 GTTTCTGCCTGCGTGCAA 59.279 55.556 1.43 0.00 41.51 4.08
7116 8904 3.286751 GGTTTCTGCCTGCGTGCA 61.287 61.111 0.00 0.00 39.37 4.57
7117 8905 4.043200 GGGTTTCTGCCTGCGTGC 62.043 66.667 0.00 0.00 0.00 5.34
7118 8906 1.973281 ATGGGTTTCTGCCTGCGTG 60.973 57.895 0.00 0.00 0.00 5.34
7119 8907 1.973281 CATGGGTTTCTGCCTGCGT 60.973 57.895 0.00 0.00 0.00 5.24
7120 8908 2.879907 CATGGGTTTCTGCCTGCG 59.120 61.111 0.00 0.00 0.00 5.18
7121 8909 1.818959 TTGCATGGGTTTCTGCCTGC 61.819 55.000 0.00 0.00 37.59 4.85
7205 9002 2.035530 AGCTCAAATGCTCTGGCTAC 57.964 50.000 0.00 0.00 39.34 3.58



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.