Multiple sequence alignment - TraesCS2D01G398300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G398300 chr2D 100.000 4087 0 0 1 4087 511436219 511440305 0.000000e+00 7548.0
1 TraesCS2D01G398300 chr2B 89.752 2342 136 39 1 2282 600439871 600442168 0.000000e+00 2900.0
2 TraesCS2D01G398300 chr2B 94.853 816 24 3 2297 3112 600442222 600443019 0.000000e+00 1258.0
3 TraesCS2D01G398300 chr2B 89.406 623 31 14 3182 3798 600443016 600443609 0.000000e+00 752.0
4 TraesCS2D01G398300 chr2B 91.026 156 4 3 3799 3948 600443640 600443791 6.930000e-48 202.0
5 TraesCS2D01G398300 chr2B 88.764 89 2 6 3942 4024 600443814 600443900 7.230000e-18 102.0
6 TraesCS2D01G398300 chr7A 87.616 541 52 6 1879 2409 494862390 494862925 7.510000e-172 614.0
7 TraesCS2D01G398300 chrUn 93.617 282 13 2 2566 2847 10654149 10654425 2.270000e-112 416.0
8 TraesCS2D01G398300 chr3B 89.161 286 24 3 2566 2847 20463715 20463997 2.340000e-92 350.0
9 TraesCS2D01G398300 chr3B 97.500 40 1 0 2350 2389 20463659 20463698 7.330000e-08 69.4
10 TraesCS2D01G398300 chr1A 95.349 86 4 0 2566 2651 574396554 574396639 1.980000e-28 137.0
11 TraesCS2D01G398300 chr1A 96.491 57 2 0 2399 2455 574396499 574396555 1.210000e-15 95.3
12 TraesCS2D01G398300 chr1A 100.000 28 0 0 2811 2838 574396679 574396706 7.000000e-03 52.8
13 TraesCS2D01G398300 chr3A 93.976 83 5 0 2566 2648 676883599 676883681 4.290000e-25 126.0
14 TraesCS2D01G398300 chr3A 96.491 57 2 0 2399 2455 676883544 676883600 1.210000e-15 95.3
15 TraesCS2D01G398300 chr3A 100.000 28 0 0 2811 2838 676883736 676883763 7.000000e-03 52.8
16 TraesCS2D01G398300 chr2A 91.860 86 7 0 2566 2651 448541088 448541003 2.000000e-23 121.0
17 TraesCS2D01G398300 chr2A 96.296 54 2 0 2402 2455 448541140 448541087 5.630000e-14 89.8
18 TraesCS2D01G398300 chr2A 100.000 28 0 0 2811 2838 448540951 448540924 7.000000e-03 52.8
19 TraesCS2D01G398300 chr5D 88.406 69 8 0 2844 2912 457007677 457007609 2.620000e-12 84.2
20 TraesCS2D01G398300 chr5A 86.957 69 9 0 2844 2912 574932564 574932496 1.220000e-10 78.7
21 TraesCS2D01G398300 chr6B 95.000 40 2 0 2350 2389 712335953 712335992 3.410000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G398300 chr2D 511436219 511440305 4086 False 7548.0 7548 100.0000 1 4087 1 chr2D.!!$F1 4086
1 TraesCS2D01G398300 chr2B 600439871 600443900 4029 False 1042.8 2900 90.7602 1 4024 5 chr2B.!!$F1 4023
2 TraesCS2D01G398300 chr7A 494862390 494862925 535 False 614.0 614 87.6160 1879 2409 1 chr7A.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 730 0.256752 CCCATCTCACCATGGAAGCA 59.743 55.0 21.47 6.19 45.79 3.91 F
848 873 0.685097 TCCTTTCCGTCCTGAACCTG 59.315 55.0 0.00 0.00 0.00 4.00 F
2290 2354 0.107410 TCAGTTTGCGTCTGTTGGGT 60.107 50.0 3.31 0.00 34.86 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1597 0.035915 TAGCTTGCATACACGGCCAA 60.036 50.0 2.24 0.0 0.00 4.52 R
2293 2357 0.525761 ACCACGGCCATTGAAAATCG 59.474 50.0 2.24 0.0 0.00 3.34 R
4063 4241 0.039074 GATAGGATCACGCGGTGGAG 60.039 60.0 12.47 0.0 33.87 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.548208 GCTTCTTTAGTTTATTTTGTAGCTCTG 57.452 33.333 0.00 0.00 0.00 3.35
33 34 9.548208 CTTCTTTAGTTTATTTTGTAGCTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
46 47 5.292765 TGTAGCTCTGCAGTTCTAATATGC 58.707 41.667 14.67 5.64 40.40 3.14
55 56 5.761726 TGCAGTTCTAATATGCTCATTCCTG 59.238 40.000 0.00 0.00 40.62 3.86
78 79 5.038033 GCTGAAGACTATGTTTCCGAGTAG 58.962 45.833 0.00 0.00 0.00 2.57
79 80 5.163642 GCTGAAGACTATGTTTCCGAGTAGA 60.164 44.000 0.00 0.00 0.00 2.59
111 112 2.515429 TCTCCTACACCCCTATAACCGT 59.485 50.000 0.00 0.00 0.00 4.83
112 113 3.721575 TCTCCTACACCCCTATAACCGTA 59.278 47.826 0.00 0.00 0.00 4.02
114 115 5.078683 TCCTACACCCCTATAACCGTATT 57.921 43.478 0.00 0.00 0.00 1.89
115 116 6.045459 TCTCCTACACCCCTATAACCGTATTA 59.955 42.308 0.00 0.00 0.00 0.98
116 117 6.010219 TCCTACACCCCTATAACCGTATTAC 58.990 44.000 0.00 0.00 0.00 1.89
117 118 5.185828 CCTACACCCCTATAACCGTATTACC 59.814 48.000 0.00 0.00 0.00 2.85
119 120 5.218959 ACACCCCTATAACCGTATTACCTT 58.781 41.667 0.00 0.00 0.00 3.50
120 121 5.070847 ACACCCCTATAACCGTATTACCTTG 59.929 44.000 0.00 0.00 0.00 3.61
121 122 5.305128 CACCCCTATAACCGTATTACCTTGA 59.695 44.000 0.00 0.00 0.00 3.02
123 124 5.279657 CCCCTATAACCGTATTACCTTGACC 60.280 48.000 0.00 0.00 0.00 4.02
124 125 5.541484 CCCTATAACCGTATTACCTTGACCT 59.459 44.000 0.00 0.00 0.00 3.85
125 126 6.042437 CCCTATAACCGTATTACCTTGACCTT 59.958 42.308 0.00 0.00 0.00 3.50
126 127 7.233348 CCCTATAACCGTATTACCTTGACCTTA 59.767 40.741 0.00 0.00 0.00 2.69
127 128 8.084684 CCTATAACCGTATTACCTTGACCTTAC 58.915 40.741 0.00 0.00 0.00 2.34
128 129 5.743636 AACCGTATTACCTTGACCTTACA 57.256 39.130 0.00 0.00 0.00 2.41
129 130 5.334724 ACCGTATTACCTTGACCTTACAG 57.665 43.478 0.00 0.00 0.00 2.74
130 131 4.117685 CCGTATTACCTTGACCTTACAGC 58.882 47.826 0.00 0.00 0.00 4.40
131 132 4.142004 CCGTATTACCTTGACCTTACAGCT 60.142 45.833 0.00 0.00 0.00 4.24
132 133 5.416947 CGTATTACCTTGACCTTACAGCTT 58.583 41.667 0.00 0.00 0.00 3.74
134 135 6.474751 CGTATTACCTTGACCTTACAGCTTAC 59.525 42.308 0.00 0.00 0.00 2.34
135 136 5.811796 TTACCTTGACCTTACAGCTTACA 57.188 39.130 0.00 0.00 0.00 2.41
137 138 4.386711 ACCTTGACCTTACAGCTTACAAC 58.613 43.478 0.00 0.00 0.00 3.32
139 140 4.213482 CCTTGACCTTACAGCTTACAACAC 59.787 45.833 0.00 0.00 0.00 3.32
140 141 4.409718 TGACCTTACAGCTTACAACACA 57.590 40.909 0.00 0.00 0.00 3.72
141 142 4.968259 TGACCTTACAGCTTACAACACAT 58.032 39.130 0.00 0.00 0.00 3.21
142 143 4.994852 TGACCTTACAGCTTACAACACATC 59.005 41.667 0.00 0.00 0.00 3.06
143 144 4.968259 ACCTTACAGCTTACAACACATCA 58.032 39.130 0.00 0.00 0.00 3.07
145 146 4.154195 CCTTACAGCTTACAACACATCACC 59.846 45.833 0.00 0.00 0.00 4.02
146 147 3.207265 ACAGCTTACAACACATCACCA 57.793 42.857 0.00 0.00 0.00 4.17
148 149 4.144297 ACAGCTTACAACACATCACCAAT 58.856 39.130 0.00 0.00 0.00 3.16
149 150 5.312895 ACAGCTTACAACACATCACCAATA 58.687 37.500 0.00 0.00 0.00 1.90
150 151 5.412594 ACAGCTTACAACACATCACCAATAG 59.587 40.000 0.00 0.00 0.00 1.73
161 164 4.202461 ACATCACCAATAGAACCACACAGT 60.202 41.667 0.00 0.00 0.00 3.55
172 175 1.142870 ACCACACAGTTAGCACACCAT 59.857 47.619 0.00 0.00 0.00 3.55
185 189 0.329931 ACACCATTAACCATCGGGCA 59.670 50.000 0.00 0.00 37.90 5.36
187 191 2.173782 ACACCATTAACCATCGGGCATA 59.826 45.455 0.00 0.00 37.90 3.14
195 199 0.947244 CCATCGGGCATAGCTCAAAC 59.053 55.000 0.00 0.00 0.00 2.93
204 208 2.611292 GCATAGCTCAAACTGCACTAGG 59.389 50.000 0.00 0.00 34.77 3.02
207 211 1.277557 AGCTCAAACTGCACTAGGAGG 59.722 52.381 0.00 0.00 37.55 4.30
223 227 1.686741 GGAGGAACCTCGAGACCAGAT 60.687 57.143 15.71 0.00 43.59 2.90
224 228 2.104170 GAGGAACCTCGAGACCAGATT 58.896 52.381 15.71 0.00 33.06 2.40
237 241 5.287674 AGACCAGATTGAGACCATGTATG 57.712 43.478 0.00 0.00 0.00 2.39
305 309 1.295423 CCGCCGGAGAGGAAGAAAA 59.705 57.895 5.05 0.00 45.00 2.29
328 332 2.515057 GCGAGGAGCGAGAGAGGA 60.515 66.667 0.00 0.00 44.57 3.71
329 333 2.542907 GCGAGGAGCGAGAGAGGAG 61.543 68.421 0.00 0.00 44.57 3.69
333 337 1.152963 GGAGCGAGAGAGGAGAGCT 60.153 63.158 0.00 0.00 41.29 4.09
347 351 2.030981 GGAGAGCTATCCTTTACGTCCG 60.031 54.545 20.39 0.00 36.35 4.79
367 371 2.285220 CGTGAGACCAATTTATGAGCGG 59.715 50.000 0.00 0.00 0.00 5.52
375 379 7.257722 AGACCAATTTATGAGCGGTATTTTTG 58.742 34.615 0.00 0.00 0.00 2.44
389 393 6.753279 GCGGTATTTTTGTTATTTTAGGGGAC 59.247 38.462 0.00 0.00 0.00 4.46
399 403 8.801882 TGTTATTTTAGGGGACAATAGTTCAG 57.198 34.615 0.00 0.00 0.00 3.02
400 404 8.387813 TGTTATTTTAGGGGACAATAGTTCAGT 58.612 33.333 0.00 0.00 0.00 3.41
405 409 7.743116 TTAGGGGACAATAGTTCAGTTCATA 57.257 36.000 0.00 0.00 0.00 2.15
408 412 5.338871 GGGGACAATAGTTCAGTTCATACCA 60.339 44.000 0.00 0.00 0.00 3.25
468 473 8.766000 TGCGAGAAGTTCAAAACATATTAGTA 57.234 30.769 5.50 0.00 0.00 1.82
502 507 6.519353 TTGTTATTATGTACTCCGCAATCG 57.481 37.500 0.00 0.00 0.00 3.34
527 532 8.020819 CGGAGTTTTCAAATAACAAATAGCTCA 58.979 33.333 0.00 0.00 0.00 4.26
544 549 5.702349 AGCTCAAAAAGGATGTCAAGAAG 57.298 39.130 0.00 0.00 0.00 2.85
632 651 6.485171 AGTTATTACCACTTGAGCAAGGAAT 58.515 36.000 14.14 9.87 42.53 3.01
658 677 4.389576 CAGCCGGCGCTCAAACAC 62.390 66.667 23.20 0.00 43.95 3.32
673 692 1.161563 AACACCCACCACTTTACGCG 61.162 55.000 3.53 3.53 0.00 6.01
700 719 2.507058 CCCTCAAGTTGATCCCATCTCA 59.493 50.000 5.91 0.00 0.00 3.27
703 722 2.912295 TCAAGTTGATCCCATCTCACCA 59.088 45.455 0.08 0.00 0.00 4.17
705 724 3.572632 AGTTGATCCCATCTCACCATG 57.427 47.619 0.00 0.00 0.00 3.66
706 725 2.174210 AGTTGATCCCATCTCACCATGG 59.826 50.000 11.19 11.19 42.91 3.66
707 726 2.173356 GTTGATCCCATCTCACCATGGA 59.827 50.000 21.47 0.00 45.79 3.41
708 727 2.490961 TGATCCCATCTCACCATGGAA 58.509 47.619 21.47 4.97 45.79 3.53
709 728 2.440627 TGATCCCATCTCACCATGGAAG 59.559 50.000 21.47 15.30 45.79 3.46
710 729 0.548031 TCCCATCTCACCATGGAAGC 59.452 55.000 21.47 0.00 45.79 3.86
711 730 0.256752 CCCATCTCACCATGGAAGCA 59.743 55.000 21.47 6.19 45.79 3.91
712 731 1.133575 CCCATCTCACCATGGAAGCAT 60.134 52.381 21.47 8.08 45.79 3.79
713 732 2.662866 CCATCTCACCATGGAAGCATT 58.337 47.619 21.47 0.00 45.79 3.56
714 733 3.435457 CCCATCTCACCATGGAAGCATTA 60.435 47.826 21.47 0.00 45.79 1.90
715 734 3.819337 CCATCTCACCATGGAAGCATTAG 59.181 47.826 21.47 4.09 45.79 1.73
716 735 2.923121 TCTCACCATGGAAGCATTAGC 58.077 47.619 21.47 0.00 42.56 3.09
717 736 2.239402 TCTCACCATGGAAGCATTAGCA 59.761 45.455 21.47 0.00 45.49 3.49
718 737 2.617308 CTCACCATGGAAGCATTAGCAG 59.383 50.000 21.47 0.00 45.49 4.24
719 738 2.025981 TCACCATGGAAGCATTAGCAGT 60.026 45.455 21.47 0.00 45.49 4.40
720 739 2.756760 CACCATGGAAGCATTAGCAGTT 59.243 45.455 21.47 0.00 45.49 3.16
721 740 3.194116 CACCATGGAAGCATTAGCAGTTT 59.806 43.478 21.47 0.00 45.49 2.66
722 741 4.398988 CACCATGGAAGCATTAGCAGTTTA 59.601 41.667 21.47 0.00 45.49 2.01
723 742 4.641989 ACCATGGAAGCATTAGCAGTTTAG 59.358 41.667 21.47 0.00 45.49 1.85
724 743 4.498682 CCATGGAAGCATTAGCAGTTTAGC 60.499 45.833 5.56 0.00 45.49 3.09
725 744 3.684908 TGGAAGCATTAGCAGTTTAGCA 58.315 40.909 0.00 0.00 45.49 3.49
726 745 3.440173 TGGAAGCATTAGCAGTTTAGCAC 59.560 43.478 0.00 0.00 45.49 4.40
727 746 3.440173 GGAAGCATTAGCAGTTTAGCACA 59.560 43.478 0.00 0.00 45.49 4.57
728 747 4.082787 GGAAGCATTAGCAGTTTAGCACAA 60.083 41.667 0.00 0.00 45.49 3.33
729 748 4.691860 AGCATTAGCAGTTTAGCACAAG 57.308 40.909 0.00 0.00 45.49 3.16
730 749 3.119708 AGCATTAGCAGTTTAGCACAAGC 60.120 43.478 0.00 0.00 45.49 4.01
731 750 3.366273 GCATTAGCAGTTTAGCACAAGCA 60.366 43.478 0.00 0.00 41.72 3.91
755 774 2.676342 CCCGAATAAGAACCAACCTTCG 59.324 50.000 0.00 0.00 36.25 3.79
831 856 2.855660 GTCTTCGCCTAGACTCTTCC 57.144 55.000 5.79 0.00 41.07 3.46
833 858 2.756207 GTCTTCGCCTAGACTCTTCCTT 59.244 50.000 5.79 0.00 41.07 3.36
843 868 1.893801 GACTCTTCCTTTCCGTCCTGA 59.106 52.381 0.00 0.00 0.00 3.86
848 873 0.685097 TCCTTTCCGTCCTGAACCTG 59.315 55.000 0.00 0.00 0.00 4.00
916 941 2.969628 TTCATCTCCCGCTCTTTCTC 57.030 50.000 0.00 0.00 0.00 2.87
919 944 1.051556 ATCTCCCGCTCTTTCTCCCC 61.052 60.000 0.00 0.00 0.00 4.81
988 1013 3.461773 GGCGGAGGAGCAGTAGCA 61.462 66.667 0.00 0.00 45.49 3.49
991 1016 2.790791 CGGAGGAGCAGTAGCAGGG 61.791 68.421 0.00 0.00 45.49 4.45
1426 1463 4.033014 CGTCCTTTCGGCTCTAATTCTTTC 59.967 45.833 0.00 0.00 0.00 2.62
1516 1553 5.606348 AGGGCTCACATTTTTGTTACAAA 57.394 34.783 6.41 6.41 0.00 2.83
1533 1570 8.202745 TGTTACAAAATTTTCGGATTTTTGCT 57.797 26.923 0.00 9.30 40.04 3.91
1535 1572 9.153952 GTTACAAAATTTTCGGATTTTTGCTTC 57.846 29.630 0.00 7.31 40.04 3.86
1560 1597 0.538746 AAGAAATTCCCGTGCCCGTT 60.539 50.000 0.00 0.00 0.00 4.44
1695 1732 1.665282 TCGCCGCTTTAACTTCGCA 60.665 52.632 0.00 0.00 0.00 5.10
1697 1734 1.058057 CGCCGCTTTAACTTCGCAAC 61.058 55.000 0.00 0.00 0.00 4.17
1715 1752 2.887152 CAACCCCCTTCTCAAGAACAAG 59.113 50.000 0.00 0.00 0.00 3.16
1722 1759 0.321671 TCTCAAGAACAAGGGAGCCG 59.678 55.000 0.00 0.00 0.00 5.52
1727 1764 1.003233 GAACAAGGGAGCCGCTTCT 60.003 57.895 0.00 0.00 34.44 2.85
1764 1801 3.059884 ACAATGCGACTCTGTTACTGTG 58.940 45.455 0.00 0.00 0.00 3.66
1787 1824 2.046892 AAGCTGCTGGTAGTGCGG 60.047 61.111 1.35 0.00 39.61 5.69
1838 1875 1.847798 AACCTCCGGCCTACAATGCA 61.848 55.000 0.00 0.00 0.00 3.96
2085 2135 2.038269 AGCACACCCGGTAATTGCG 61.038 57.895 0.00 0.00 38.26 4.85
2129 2189 3.476552 TGCGAATTAATCTCCCATGTCC 58.523 45.455 0.00 0.00 0.00 4.02
2152 2216 0.454452 GCGCGTTCTGATGGGTTTTC 60.454 55.000 8.43 0.00 0.00 2.29
2155 2219 0.168128 CGTTCTGATGGGTTTTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
2157 2221 1.468914 GTTCTGATGGGTTTTCGGCTC 59.531 52.381 0.00 0.00 0.00 4.70
2277 2341 5.371526 TCATTGCTCTCTCTGTTTCAGTTT 58.628 37.500 0.00 0.00 32.61 2.66
2282 2346 3.123804 TCTCTCTGTTTCAGTTTGCGTC 58.876 45.455 0.00 0.00 32.61 5.19
2283 2347 3.126831 CTCTCTGTTTCAGTTTGCGTCT 58.873 45.455 0.00 0.00 32.61 4.18
2284 2348 2.866156 TCTCTGTTTCAGTTTGCGTCTG 59.134 45.455 0.00 0.00 32.61 3.51
2286 2350 3.006940 TCTGTTTCAGTTTGCGTCTGTT 58.993 40.909 3.31 0.00 34.86 3.16
2287 2351 3.100817 CTGTTTCAGTTTGCGTCTGTTG 58.899 45.455 3.31 0.00 34.86 3.33
2288 2352 2.159448 TGTTTCAGTTTGCGTCTGTTGG 60.159 45.455 3.31 0.00 34.86 3.77
2289 2353 1.021202 TTCAGTTTGCGTCTGTTGGG 58.979 50.000 3.31 0.00 34.86 4.12
2290 2354 0.107410 TCAGTTTGCGTCTGTTGGGT 60.107 50.000 3.31 0.00 34.86 4.51
2292 2356 0.393808 AGTTTGCGTCTGTTGGGTGT 60.394 50.000 0.00 0.00 0.00 4.16
2293 2357 0.028902 GTTTGCGTCTGTTGGGTGTC 59.971 55.000 0.00 0.00 0.00 3.67
2294 2358 1.433053 TTTGCGTCTGTTGGGTGTCG 61.433 55.000 0.00 0.00 0.00 4.35
2345 2448 2.505982 CGGTGTATGCAGGGAGGG 59.494 66.667 0.00 0.00 0.00 4.30
2552 2655 2.801162 CACCAGTCGTCGTGCTCG 60.801 66.667 0.81 0.81 38.55 5.03
2564 2667 3.371063 TGCTCGACCAGGACGTCC 61.371 66.667 27.67 27.67 0.00 4.79
2618 2721 4.671590 TCGCCGTCCAGGGACTCA 62.672 66.667 15.95 0.00 42.54 3.41
2621 2724 2.663196 CCGTCCAGGGACTCAACC 59.337 66.667 15.95 0.00 42.54 3.77
3026 3129 2.186160 CCTGCACGCCAAGTTCACA 61.186 57.895 0.00 0.00 0.00 3.58
3088 3191 3.012518 GCATGCCTGTCAAGTACTGAAT 58.987 45.455 6.36 0.00 35.22 2.57
3094 3197 3.055530 CCTGTCAAGTACTGAATCCTGCT 60.056 47.826 0.00 0.00 35.22 4.24
3104 3207 1.022735 GAATCCTGCTGCCATGTGAG 58.977 55.000 0.00 0.00 0.00 3.51
3111 3214 4.905240 TGCCATGTGAGCAGTGTT 57.095 50.000 0.00 0.00 34.69 3.32
3112 3215 2.333291 TGCCATGTGAGCAGTGTTG 58.667 52.632 0.00 0.00 34.69 3.33
3113 3216 0.179023 TGCCATGTGAGCAGTGTTGA 60.179 50.000 0.00 0.00 34.69 3.18
3114 3217 0.520404 GCCATGTGAGCAGTGTTGAG 59.480 55.000 0.00 0.00 0.00 3.02
3115 3218 1.879372 GCCATGTGAGCAGTGTTGAGA 60.879 52.381 0.00 0.00 0.00 3.27
3116 3219 2.497138 CCATGTGAGCAGTGTTGAGAA 58.503 47.619 0.00 0.00 0.00 2.87
3117 3220 2.225019 CCATGTGAGCAGTGTTGAGAAC 59.775 50.000 0.00 0.00 0.00 3.01
3118 3221 2.689553 TGTGAGCAGTGTTGAGAACA 57.310 45.000 0.00 0.00 39.52 3.18
3119 3222 2.554142 TGTGAGCAGTGTTGAGAACAG 58.446 47.619 0.00 0.00 43.10 3.16
3120 3223 1.869767 GTGAGCAGTGTTGAGAACAGG 59.130 52.381 0.00 0.00 43.10 4.00
3121 3224 1.202687 TGAGCAGTGTTGAGAACAGGG 60.203 52.381 0.00 0.00 43.10 4.45
3122 3225 0.839946 AGCAGTGTTGAGAACAGGGT 59.160 50.000 0.00 0.00 43.10 4.34
3123 3226 1.212935 AGCAGTGTTGAGAACAGGGTT 59.787 47.619 0.00 0.00 43.10 4.11
3124 3227 1.604278 GCAGTGTTGAGAACAGGGTTC 59.396 52.381 0.94 0.94 43.10 3.62
3125 3228 2.917933 CAGTGTTGAGAACAGGGTTCA 58.082 47.619 11.28 0.00 43.10 3.18
3126 3229 2.874701 CAGTGTTGAGAACAGGGTTCAG 59.125 50.000 11.28 0.00 43.10 3.02
3127 3230 2.158755 AGTGTTGAGAACAGGGTTCAGG 60.159 50.000 11.28 0.00 43.10 3.86
3128 3231 1.843851 TGTTGAGAACAGGGTTCAGGT 59.156 47.619 11.28 0.00 36.25 4.00
3129 3232 2.158813 TGTTGAGAACAGGGTTCAGGTC 60.159 50.000 11.28 1.79 36.25 3.85
3130 3233 1.801242 TGAGAACAGGGTTCAGGTCA 58.199 50.000 11.28 4.15 0.00 4.02
3131 3234 1.694150 TGAGAACAGGGTTCAGGTCAG 59.306 52.381 11.28 0.00 0.00 3.51
3132 3235 1.694696 GAGAACAGGGTTCAGGTCAGT 59.305 52.381 11.28 0.00 0.00 3.41
3133 3236 1.417890 AGAACAGGGTTCAGGTCAGTG 59.582 52.381 11.28 0.00 0.00 3.66
3134 3237 1.141053 GAACAGGGTTCAGGTCAGTGT 59.859 52.381 4.33 0.00 0.00 3.55
3135 3238 0.469917 ACAGGGTTCAGGTCAGTGTG 59.530 55.000 0.00 0.00 0.00 3.82
3136 3239 0.469917 CAGGGTTCAGGTCAGTGTGT 59.530 55.000 0.00 0.00 0.00 3.72
3137 3240 0.759346 AGGGTTCAGGTCAGTGTGTC 59.241 55.000 0.00 0.00 0.00 3.67
3138 3241 0.250338 GGGTTCAGGTCAGTGTGTCC 60.250 60.000 0.00 0.00 0.00 4.02
3139 3242 0.250338 GGTTCAGGTCAGTGTGTCCC 60.250 60.000 0.00 0.00 0.00 4.46
3140 3243 0.468226 GTTCAGGTCAGTGTGTCCCA 59.532 55.000 0.00 0.00 0.00 4.37
3141 3244 1.134220 GTTCAGGTCAGTGTGTCCCAA 60.134 52.381 0.00 0.00 0.00 4.12
3142 3245 0.758734 TCAGGTCAGTGTGTCCCAAG 59.241 55.000 0.00 0.00 0.00 3.61
3143 3246 0.758734 CAGGTCAGTGTGTCCCAAGA 59.241 55.000 0.00 0.00 0.00 3.02
3144 3247 0.759346 AGGTCAGTGTGTCCCAAGAC 59.241 55.000 0.00 0.00 43.83 3.01
3145 3248 0.250338 GGTCAGTGTGTCCCAAGACC 60.250 60.000 0.00 0.00 42.81 3.85
3146 3249 0.250338 GTCAGTGTGTCCCAAGACCC 60.250 60.000 0.00 0.00 42.81 4.46
3147 3250 1.073199 CAGTGTGTCCCAAGACCCC 59.927 63.158 0.00 0.00 42.81 4.95
3148 3251 1.385347 AGTGTGTCCCAAGACCCCA 60.385 57.895 0.00 0.00 42.81 4.96
3149 3252 0.991355 AGTGTGTCCCAAGACCCCAA 60.991 55.000 0.00 0.00 42.81 4.12
3150 3253 0.822121 GTGTGTCCCAAGACCCCAAC 60.822 60.000 0.00 0.00 42.81 3.77
3151 3254 1.599797 GTGTCCCAAGACCCCAACG 60.600 63.158 0.00 0.00 42.81 4.10
3152 3255 1.766864 TGTCCCAAGACCCCAACGA 60.767 57.895 0.00 0.00 42.81 3.85
3153 3256 1.003718 GTCCCAAGACCCCAACGAG 60.004 63.158 0.00 0.00 37.00 4.18
3154 3257 2.221299 TCCCAAGACCCCAACGAGG 61.221 63.158 0.00 0.00 37.03 4.63
3166 3269 3.121738 CCAACGAGGGTGAAGTAAAGT 57.878 47.619 0.00 0.00 0.00 2.66
3167 3270 3.473625 CCAACGAGGGTGAAGTAAAGTT 58.526 45.455 0.00 0.00 0.00 2.66
3168 3271 4.634199 CCAACGAGGGTGAAGTAAAGTTA 58.366 43.478 0.00 0.00 0.00 2.24
3169 3272 4.689345 CCAACGAGGGTGAAGTAAAGTTAG 59.311 45.833 0.00 0.00 0.00 2.34
3170 3273 5.295152 CAACGAGGGTGAAGTAAAGTTAGT 58.705 41.667 0.00 0.00 0.00 2.24
3171 3274 6.449698 CAACGAGGGTGAAGTAAAGTTAGTA 58.550 40.000 0.00 0.00 0.00 1.82
3172 3275 6.264841 ACGAGGGTGAAGTAAAGTTAGTAG 57.735 41.667 0.00 0.00 0.00 2.57
3173 3276 5.100943 CGAGGGTGAAGTAAAGTTAGTAGC 58.899 45.833 0.00 0.00 0.00 3.58
3174 3277 5.069501 AGGGTGAAGTAAAGTTAGTAGCG 57.930 43.478 0.00 0.00 0.00 4.26
3175 3278 4.081807 AGGGTGAAGTAAAGTTAGTAGCGG 60.082 45.833 0.00 0.00 0.00 5.52
3176 3279 3.615937 GGTGAAGTAAAGTTAGTAGCGGC 59.384 47.826 0.00 0.00 0.00 6.53
3177 3280 4.240096 GTGAAGTAAAGTTAGTAGCGGCA 58.760 43.478 1.45 0.00 0.00 5.69
3178 3281 4.326548 GTGAAGTAAAGTTAGTAGCGGCAG 59.673 45.833 1.45 0.00 0.00 4.85
3179 3282 4.021719 TGAAGTAAAGTTAGTAGCGGCAGT 60.022 41.667 1.45 0.00 0.00 4.40
3180 3283 4.532314 AGTAAAGTTAGTAGCGGCAGTT 57.468 40.909 1.45 0.00 0.00 3.16
3202 3305 4.647424 TGTTAGGTTTGAGCTTTTGTGG 57.353 40.909 0.00 0.00 0.00 4.17
3203 3306 4.020543 TGTTAGGTTTGAGCTTTTGTGGT 58.979 39.130 0.00 0.00 0.00 4.16
3204 3307 4.142271 TGTTAGGTTTGAGCTTTTGTGGTG 60.142 41.667 0.00 0.00 0.00 4.17
3249 3352 3.313012 TCCTGTTAATGACCGTGACTG 57.687 47.619 0.00 0.00 0.00 3.51
3341 3450 4.383052 GTGTGAACTGTGTCAAGATCGTAG 59.617 45.833 0.00 0.00 0.00 3.51
3346 3455 1.067142 TGTGTCAAGATCGTAGGCACC 60.067 52.381 14.29 1.86 0.00 5.01
3347 3456 1.067142 GTGTCAAGATCGTAGGCACCA 60.067 52.381 8.13 0.00 0.00 4.17
3364 3473 4.217118 GGCACCAATAGGCAATCTTCTATG 59.783 45.833 0.00 0.00 39.06 2.23
3365 3474 5.065914 GCACCAATAGGCAATCTTCTATGA 58.934 41.667 0.00 0.00 39.06 2.15
3379 3488 3.111853 TCTATGATGCACGGATGGAAC 57.888 47.619 0.00 0.00 0.00 3.62
3441 3550 2.520458 TGGCAACAGGGACCTTGG 59.480 61.111 8.68 0.00 46.17 3.61
3442 3551 2.991540 GGCAACAGGGACCTTGGC 60.992 66.667 8.68 5.69 35.53 4.52
3452 3561 1.207329 GGGACCTTGGCAGTACTAGTG 59.793 57.143 5.39 0.00 0.00 2.74
3453 3562 1.207329 GGACCTTGGCAGTACTAGTGG 59.793 57.143 5.39 0.00 0.00 4.00
3454 3563 1.900486 GACCTTGGCAGTACTAGTGGT 59.100 52.381 5.39 0.77 0.00 4.16
3455 3564 3.094572 GACCTTGGCAGTACTAGTGGTA 58.905 50.000 5.39 0.00 0.00 3.25
3544 3653 2.742053 CCGTTTGGTATGTCTGTTGAGG 59.258 50.000 0.00 0.00 0.00 3.86
3580 3689 0.814410 CTGCATCCGATGAGCTGCTT 60.814 55.000 12.79 0.00 35.66 3.91
3591 3700 2.430921 GCTGCTTGCTGCTTGCTG 60.431 61.111 15.47 15.50 43.37 4.41
3592 3701 2.430921 CTGCTTGCTGCTTGCTGC 60.431 61.111 15.80 15.80 43.37 5.25
3610 3719 5.527951 TGCTGCAACCTGTGTTAATTAAAG 58.472 37.500 0.00 0.00 32.09 1.85
3614 3723 5.068460 TGCAACCTGTGTTAATTAAAGCAGT 59.932 36.000 19.95 11.19 32.09 4.40
3632 3741 0.464452 GTTAGCTGTCCCGTAGCCAT 59.536 55.000 0.00 0.00 42.07 4.40
3641 3750 2.567615 GTCCCGTAGCCATTGGATCTAT 59.432 50.000 6.95 0.00 0.00 1.98
3643 3752 3.767673 TCCCGTAGCCATTGGATCTATAC 59.232 47.826 6.95 0.00 0.00 1.47
3644 3753 3.769844 CCCGTAGCCATTGGATCTATACT 59.230 47.826 6.95 0.00 0.00 2.12
3645 3754 4.954202 CCCGTAGCCATTGGATCTATACTA 59.046 45.833 6.95 0.00 0.00 1.82
3646 3755 5.163540 CCCGTAGCCATTGGATCTATACTAC 60.164 48.000 6.95 5.70 0.00 2.73
3650 3759 4.840680 AGCCATTGGATCTATACTACTGCA 59.159 41.667 6.95 0.00 0.00 4.41
3652 3761 5.583854 GCCATTGGATCTATACTACTGCATG 59.416 44.000 6.95 0.00 0.00 4.06
3653 3762 5.583854 CCATTGGATCTATACTACTGCATGC 59.416 44.000 11.82 11.82 0.00 4.06
3654 3763 5.806654 TTGGATCTATACTACTGCATGCA 57.193 39.130 21.29 21.29 0.00 3.96
3655 3764 6.364568 TTGGATCTATACTACTGCATGCAT 57.635 37.500 22.97 13.83 0.00 3.96
3656 3765 5.970592 TGGATCTATACTACTGCATGCATC 58.029 41.667 22.97 11.36 0.00 3.91
3657 3766 5.039984 GGATCTATACTACTGCATGCATCG 58.960 45.833 22.97 13.40 0.00 3.84
3658 3767 4.440839 TCTATACTACTGCATGCATCGG 57.559 45.455 22.97 12.59 0.00 4.18
3659 3768 1.800805 ATACTACTGCATGCATCGGC 58.199 50.000 22.97 0.00 41.68 5.54
3660 3769 0.752658 TACTACTGCATGCATCGGCT 59.247 50.000 22.97 5.58 41.91 5.52
3661 3770 0.812811 ACTACTGCATGCATCGGCTG 60.813 55.000 22.97 10.98 41.91 4.85
3671 3780 2.117206 ATCGGCTGGGGCAAAACA 59.883 55.556 0.00 0.00 40.87 2.83
3680 3789 1.047801 GGGGCAAAACACAGTTCCAT 58.952 50.000 0.00 0.00 0.00 3.41
3681 3790 1.416030 GGGGCAAAACACAGTTCCATT 59.584 47.619 0.00 0.00 0.00 3.16
3682 3791 2.158827 GGGGCAAAACACAGTTCCATTT 60.159 45.455 0.00 0.00 0.00 2.32
3683 3792 2.871633 GGGCAAAACACAGTTCCATTTG 59.128 45.455 0.00 0.00 34.84 2.32
3684 3793 2.871633 GGCAAAACACAGTTCCATTTGG 59.128 45.455 0.00 0.00 32.91 3.28
3691 3800 1.416030 ACAGTTCCATTTGGTTTGGCC 59.584 47.619 0.00 0.00 34.06 5.36
3695 3804 2.661997 CATTTGGTTTGGCCCCGG 59.338 61.111 0.00 0.00 36.04 5.73
3714 3823 2.351544 CGGCTAACTACCGCCTTCTATC 60.352 54.545 0.00 0.00 44.90 2.08
3724 3833 3.194116 ACCGCCTTCTATCGTAAACAAGA 59.806 43.478 0.00 0.00 0.00 3.02
3727 3836 4.031426 CGCCTTCTATCGTAAACAAGACAC 59.969 45.833 0.00 0.00 0.00 3.67
3738 3847 2.859165 ACAAGACACCATTCCGTGAT 57.141 45.000 0.00 0.00 37.20 3.06
3743 3852 0.541863 ACACCATTCCGTGATCCTCC 59.458 55.000 0.00 0.00 37.20 4.30
3745 3854 2.039418 CACCATTCCGTGATCCTCCTA 58.961 52.381 0.00 0.00 35.68 2.94
3788 3897 0.613012 AAATCTGCACCCCTGGAAGC 60.613 55.000 0.00 0.00 0.00 3.86
3807 3946 4.357947 GAGCCACGCGTCCTCACA 62.358 66.667 24.01 0.00 0.00 3.58
3851 3990 1.298859 AATGACAGCGCCGAAACTCC 61.299 55.000 2.29 0.00 0.00 3.85
3900 4039 2.782222 TACGGCACAGCGATCTCCC 61.782 63.158 0.00 0.00 0.00 4.30
3913 4052 0.181350 ATCTCCCAGCGGAATGGTTC 59.819 55.000 0.00 0.00 37.86 3.62
3948 4093 2.035442 GTTTCGGGAGGTGAGCAGC 61.035 63.158 0.00 0.00 0.00 5.25
3949 4094 2.515979 TTTCGGGAGGTGAGCAGCA 61.516 57.895 0.00 0.00 0.00 4.41
3950 4095 2.454832 TTTCGGGAGGTGAGCAGCAG 62.455 60.000 0.00 0.00 0.00 4.24
3952 4097 4.106925 GGGAGGTGAGCAGCAGGG 62.107 72.222 0.00 0.00 0.00 4.45
3953 4098 4.792804 GGAGGTGAGCAGCAGGGC 62.793 72.222 0.00 0.00 0.00 5.19
3994 4172 2.941333 CAACGCCTCTGTGCTGTG 59.059 61.111 0.00 0.00 0.00 3.66
4006 4184 1.597854 TGCTGTGCTGACCTTTCCG 60.598 57.895 0.00 0.00 0.00 4.30
4016 4194 1.087501 GACCTTTCCGAGACCATTGC 58.912 55.000 0.00 0.00 0.00 3.56
4024 4202 2.026641 CCGAGACCATTGCCATTTGAT 58.973 47.619 0.00 0.00 0.00 2.57
4025 4203 2.033801 CCGAGACCATTGCCATTTGATC 59.966 50.000 0.00 0.00 0.00 2.92
4026 4204 2.684374 CGAGACCATTGCCATTTGATCA 59.316 45.455 0.00 0.00 0.00 2.92
4027 4205 3.317149 CGAGACCATTGCCATTTGATCAT 59.683 43.478 0.00 0.00 0.00 2.45
4028 4206 4.516321 CGAGACCATTGCCATTTGATCATA 59.484 41.667 0.00 0.00 0.00 2.15
4029 4207 5.182570 CGAGACCATTGCCATTTGATCATAT 59.817 40.000 0.00 0.00 0.00 1.78
4030 4208 6.372381 CGAGACCATTGCCATTTGATCATATA 59.628 38.462 0.00 0.00 0.00 0.86
4031 4209 7.458409 AGACCATTGCCATTTGATCATATAC 57.542 36.000 0.00 0.00 0.00 1.47
4032 4210 7.236529 AGACCATTGCCATTTGATCATATACT 58.763 34.615 0.00 0.00 0.00 2.12
4033 4211 8.385491 AGACCATTGCCATTTGATCATATACTA 58.615 33.333 0.00 0.00 0.00 1.82
4034 4212 9.182214 GACCATTGCCATTTGATCATATACTAT 57.818 33.333 0.00 0.00 0.00 2.12
4039 4217 9.586435 TTGCCATTTGATCATATACTATACTCG 57.414 33.333 0.00 0.00 0.00 4.18
4040 4218 8.749354 TGCCATTTGATCATATACTATACTCGT 58.251 33.333 0.00 0.00 0.00 4.18
4041 4219 9.025020 GCCATTTGATCATATACTATACTCGTG 57.975 37.037 0.00 0.00 0.00 4.35
4042 4220 9.521503 CCATTTGATCATATACTATACTCGTGG 57.478 37.037 0.00 0.00 0.00 4.94
4043 4221 9.521503 CATTTGATCATATACTATACTCGTGGG 57.478 37.037 0.00 0.00 0.00 4.61
4044 4222 7.640597 TTGATCATATACTATACTCGTGGGG 57.359 40.000 0.00 0.00 0.00 4.96
4045 4223 5.593095 TGATCATATACTATACTCGTGGGGC 59.407 44.000 0.00 0.00 0.00 5.80
4046 4224 5.188988 TCATATACTATACTCGTGGGGCT 57.811 43.478 0.00 0.00 0.00 5.19
4047 4225 4.948004 TCATATACTATACTCGTGGGGCTG 59.052 45.833 0.00 0.00 0.00 4.85
4048 4226 1.991121 TACTATACTCGTGGGGCTGG 58.009 55.000 0.00 0.00 0.00 4.85
4049 4227 1.367840 CTATACTCGTGGGGCTGGC 59.632 63.158 0.00 0.00 0.00 4.85
4050 4228 1.075525 TATACTCGTGGGGCTGGCT 60.076 57.895 0.00 0.00 0.00 4.75
4051 4229 1.399744 TATACTCGTGGGGCTGGCTG 61.400 60.000 0.00 0.00 0.00 4.85
4052 4230 3.771531 TATACTCGTGGGGCTGGCTGA 62.772 57.143 0.00 0.00 0.00 4.26
4053 4231 4.020617 CTCGTGGGGCTGGCTGAA 62.021 66.667 0.00 0.00 0.00 3.02
4054 4232 3.329889 TCGTGGGGCTGGCTGAAT 61.330 61.111 0.00 0.00 0.00 2.57
4055 4233 2.361610 CGTGGGGCTGGCTGAATT 60.362 61.111 0.00 0.00 0.00 2.17
4056 4234 1.077787 CGTGGGGCTGGCTGAATTA 60.078 57.895 0.00 0.00 0.00 1.40
4057 4235 1.097547 CGTGGGGCTGGCTGAATTAG 61.098 60.000 0.00 0.00 0.00 1.73
4058 4236 0.753111 GTGGGGCTGGCTGAATTAGG 60.753 60.000 0.00 0.00 0.00 2.69
4066 4244 2.552599 GGCTGAATTAGGCCTACTCC 57.447 55.000 13.46 4.74 45.75 3.85
4067 4245 1.768870 GGCTGAATTAGGCCTACTCCA 59.231 52.381 13.46 9.33 45.75 3.86
4068 4246 2.485657 GGCTGAATTAGGCCTACTCCAC 60.486 54.545 13.46 6.88 45.75 4.02
4069 4247 2.485657 GCTGAATTAGGCCTACTCCACC 60.486 54.545 13.46 0.00 0.00 4.61
4070 4248 1.760613 TGAATTAGGCCTACTCCACCG 59.239 52.381 13.46 0.00 0.00 4.94
4071 4249 0.468648 AATTAGGCCTACTCCACCGC 59.531 55.000 13.46 0.00 0.00 5.68
4072 4250 1.745320 ATTAGGCCTACTCCACCGCG 61.745 60.000 13.46 0.00 0.00 6.46
4073 4251 3.650298 TAGGCCTACTCCACCGCGT 62.650 63.158 8.91 0.00 0.00 6.01
4074 4252 4.814294 GGCCTACTCCACCGCGTG 62.814 72.222 4.92 3.32 0.00 5.34
4075 4253 3.755628 GCCTACTCCACCGCGTGA 61.756 66.667 4.92 0.00 35.23 4.35
4076 4254 3.077519 GCCTACTCCACCGCGTGAT 62.078 63.158 4.92 0.00 35.23 3.06
4077 4255 1.065928 CCTACTCCACCGCGTGATC 59.934 63.158 4.92 0.00 35.23 2.92
4078 4256 1.065928 CTACTCCACCGCGTGATCC 59.934 63.158 4.92 0.00 35.23 3.36
4079 4257 1.379443 TACTCCACCGCGTGATCCT 60.379 57.895 4.92 0.00 35.23 3.24
4080 4258 0.107066 TACTCCACCGCGTGATCCTA 60.107 55.000 4.92 0.00 35.23 2.94
4081 4259 0.755698 ACTCCACCGCGTGATCCTAT 60.756 55.000 4.92 0.00 35.23 2.57
4082 4260 0.039074 CTCCACCGCGTGATCCTATC 60.039 60.000 4.92 0.00 35.23 2.08
4083 4261 1.006102 CCACCGCGTGATCCTATCC 60.006 63.158 4.92 0.00 35.23 2.59
4084 4262 1.464376 CCACCGCGTGATCCTATCCT 61.464 60.000 4.92 0.00 35.23 3.24
4085 4263 0.319040 CACCGCGTGATCCTATCCTG 60.319 60.000 4.92 0.00 35.23 3.86
4086 4264 0.755698 ACCGCGTGATCCTATCCTGT 60.756 55.000 4.92 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.507249 ACTGCAGAGCTACAAAATAAACTAAAG 58.493 33.333 23.35 0.00 0.00 1.85
19 20 8.834465 CATATTAGAACTGCAGAGCTACAAAAT 58.166 33.333 23.35 14.11 0.00 1.82
32 33 5.334724 GCAGGAATGAGCATATTAGAACTGC 60.335 44.000 0.00 0.00 39.44 4.40
33 34 5.996513 AGCAGGAATGAGCATATTAGAACTG 59.003 40.000 0.00 0.00 0.00 3.16
46 47 5.021033 ACATAGTCTTCAGCAGGAATGAG 57.979 43.478 0.00 0.00 34.32 2.90
55 56 3.851098 ACTCGGAAACATAGTCTTCAGC 58.149 45.455 0.00 0.00 0.00 4.26
91 92 2.954792 ACGGTTATAGGGGTGTAGGAG 58.045 52.381 0.00 0.00 0.00 3.69
99 100 5.279657 GGTCAAGGTAATACGGTTATAGGGG 60.280 48.000 0.00 0.00 0.00 4.79
102 103 8.632679 TGTAAGGTCAAGGTAATACGGTTATAG 58.367 37.037 0.00 0.00 0.00 1.31
123 124 4.754618 TGGTGATGTGTTGTAAGCTGTAAG 59.245 41.667 0.00 0.00 0.00 2.34
124 125 4.709250 TGGTGATGTGTTGTAAGCTGTAA 58.291 39.130 0.00 0.00 0.00 2.41
125 126 4.344359 TGGTGATGTGTTGTAAGCTGTA 57.656 40.909 0.00 0.00 0.00 2.74
126 127 3.207265 TGGTGATGTGTTGTAAGCTGT 57.793 42.857 0.00 0.00 0.00 4.40
127 128 4.771590 ATTGGTGATGTGTTGTAAGCTG 57.228 40.909 0.00 0.00 0.00 4.24
128 129 5.804639 TCTATTGGTGATGTGTTGTAAGCT 58.195 37.500 0.00 0.00 0.00 3.74
129 130 6.314784 GTTCTATTGGTGATGTGTTGTAAGC 58.685 40.000 0.00 0.00 0.00 3.09
130 131 6.429692 TGGTTCTATTGGTGATGTGTTGTAAG 59.570 38.462 0.00 0.00 0.00 2.34
131 132 6.205853 GTGGTTCTATTGGTGATGTGTTGTAA 59.794 38.462 0.00 0.00 0.00 2.41
132 133 5.703592 GTGGTTCTATTGGTGATGTGTTGTA 59.296 40.000 0.00 0.00 0.00 2.41
134 135 4.518590 TGTGGTTCTATTGGTGATGTGTTG 59.481 41.667 0.00 0.00 0.00 3.33
135 136 4.518970 GTGTGGTTCTATTGGTGATGTGTT 59.481 41.667 0.00 0.00 0.00 3.32
137 138 4.071423 TGTGTGGTTCTATTGGTGATGTG 58.929 43.478 0.00 0.00 0.00 3.21
139 140 4.326826 ACTGTGTGGTTCTATTGGTGATG 58.673 43.478 0.00 0.00 0.00 3.07
140 141 4.640771 ACTGTGTGGTTCTATTGGTGAT 57.359 40.909 0.00 0.00 0.00 3.06
141 142 4.431416 AACTGTGTGGTTCTATTGGTGA 57.569 40.909 0.00 0.00 0.00 4.02
142 143 4.154195 GCTAACTGTGTGGTTCTATTGGTG 59.846 45.833 0.00 0.00 0.00 4.17
143 144 4.202419 TGCTAACTGTGTGGTTCTATTGGT 60.202 41.667 0.00 0.00 0.00 3.67
145 146 4.754618 TGTGCTAACTGTGTGGTTCTATTG 59.245 41.667 0.00 0.00 0.00 1.90
146 147 4.755123 GTGTGCTAACTGTGTGGTTCTATT 59.245 41.667 0.00 0.00 0.00 1.73
148 149 3.493699 GGTGTGCTAACTGTGTGGTTCTA 60.494 47.826 0.00 0.00 0.00 2.10
149 150 2.561569 GTGTGCTAACTGTGTGGTTCT 58.438 47.619 0.00 0.00 0.00 3.01
150 151 1.602377 GGTGTGCTAACTGTGTGGTTC 59.398 52.381 0.00 0.00 0.00 3.62
161 164 3.275143 CCGATGGTTAATGGTGTGCTAA 58.725 45.455 0.00 0.00 0.00 3.09
172 175 1.765904 TGAGCTATGCCCGATGGTTAA 59.234 47.619 0.00 0.00 0.00 2.01
185 189 3.133721 CCTCCTAGTGCAGTTTGAGCTAT 59.866 47.826 0.00 0.00 0.00 2.97
187 191 1.277557 CCTCCTAGTGCAGTTTGAGCT 59.722 52.381 0.00 0.00 0.00 4.09
204 208 1.770294 ATCTGGTCTCGAGGTTCCTC 58.230 55.000 13.56 8.66 0.00 3.71
207 211 2.755655 TCTCAATCTGGTCTCGAGGTTC 59.244 50.000 13.56 3.70 0.00 3.62
214 218 3.902881 ACATGGTCTCAATCTGGTCTC 57.097 47.619 0.00 0.00 0.00 3.36
218 222 5.917462 TGTACATACATGGTCTCAATCTGG 58.083 41.667 0.00 0.00 0.00 3.86
237 241 0.811281 GGCTCAAGTTGGCCATGTAC 59.189 55.000 22.94 0.84 46.84 2.90
269 273 3.826754 TGCCGTCGCCTAGAGCAG 61.827 66.667 0.00 0.00 44.04 4.24
284 288 4.821589 CTTCCTCTCCGGCGGTGC 62.822 72.222 27.32 0.00 0.00 5.01
305 309 2.219325 CTCTCGCTCCTCGCACCTTT 62.219 60.000 0.00 0.00 39.08 3.11
312 316 0.880278 CTCTCCTCTCTCGCTCCTCG 60.880 65.000 0.00 0.00 40.15 4.63
315 319 0.107831 TAGCTCTCCTCTCTCGCTCC 59.892 60.000 0.00 0.00 32.49 4.70
316 320 2.076863 GATAGCTCTCCTCTCTCGCTC 58.923 57.143 0.00 0.00 32.49 5.03
317 321 1.271379 GGATAGCTCTCCTCTCTCGCT 60.271 57.143 10.83 0.00 32.18 4.93
318 322 1.165270 GGATAGCTCTCCTCTCTCGC 58.835 60.000 10.83 0.00 32.18 5.03
319 323 2.859165 AGGATAGCTCTCCTCTCTCG 57.141 55.000 14.73 0.00 42.12 4.04
320 324 4.454504 CGTAAAGGATAGCTCTCCTCTCTC 59.545 50.000 20.15 10.58 45.15 3.20
321 325 4.141344 ACGTAAAGGATAGCTCTCCTCTCT 60.141 45.833 20.15 10.86 45.15 3.10
322 326 4.139038 ACGTAAAGGATAGCTCTCCTCTC 58.861 47.826 20.15 12.37 45.15 3.20
323 327 4.139038 GACGTAAAGGATAGCTCTCCTCT 58.861 47.826 20.15 10.08 45.15 3.69
324 328 3.253921 GGACGTAAAGGATAGCTCTCCTC 59.746 52.174 20.15 8.00 45.15 3.71
326 330 2.030981 CGGACGTAAAGGATAGCTCTCC 60.031 54.545 10.13 10.13 35.37 3.71
327 331 2.617774 ACGGACGTAAAGGATAGCTCTC 59.382 50.000 0.00 0.00 0.00 3.20
328 332 2.358267 CACGGACGTAAAGGATAGCTCT 59.642 50.000 0.00 0.00 0.00 4.09
329 333 2.357009 TCACGGACGTAAAGGATAGCTC 59.643 50.000 0.00 0.00 0.00 4.09
333 337 2.684881 GGTCTCACGGACGTAAAGGATA 59.315 50.000 0.00 0.00 45.35 2.59
347 351 3.270877 ACCGCTCATAAATTGGTCTCAC 58.729 45.455 0.00 0.00 0.00 3.51
375 379 8.803397 ACTGAACTATTGTCCCCTAAAATAAC 57.197 34.615 0.00 0.00 0.00 1.89
475 480 6.656314 TGCGGAGTACATAATAACAAACAG 57.344 37.500 0.00 0.00 0.00 3.16
502 507 9.691362 TTGAGCTATTTGTTATTTGAAAACTCC 57.309 29.630 0.00 0.00 0.00 3.85
544 549 3.907894 TTGCTGTTTCGGTTTATGTCC 57.092 42.857 0.00 0.00 0.00 4.02
658 677 1.015607 GGTACGCGTAAAGTGGTGGG 61.016 60.000 22.44 0.00 33.90 4.61
673 692 2.355818 GGGATCAACTTGAGGGTGGTAC 60.356 54.545 0.00 0.00 32.53 3.34
700 719 2.814805 ACTGCTAATGCTTCCATGGT 57.185 45.000 12.58 0.00 40.48 3.55
703 722 4.096984 GTGCTAAACTGCTAATGCTTCCAT 59.903 41.667 0.00 0.00 40.48 3.41
705 724 3.440173 TGTGCTAAACTGCTAATGCTTCC 59.560 43.478 0.00 0.00 40.48 3.46
706 725 4.685169 TGTGCTAAACTGCTAATGCTTC 57.315 40.909 0.00 0.00 40.48 3.86
707 726 4.616835 GCTTGTGCTAAACTGCTAATGCTT 60.617 41.667 0.00 0.00 36.79 3.91
708 727 3.119708 GCTTGTGCTAAACTGCTAATGCT 60.120 43.478 0.00 0.00 36.79 3.79
709 728 3.174375 GCTTGTGCTAAACTGCTAATGC 58.826 45.455 0.00 0.00 36.55 3.56
710 729 4.424061 TGCTTGTGCTAAACTGCTAATG 57.576 40.909 0.00 0.00 40.48 1.90
711 730 4.321230 GGTTGCTTGTGCTAAACTGCTAAT 60.321 41.667 0.00 0.00 40.48 1.73
712 731 3.004315 GGTTGCTTGTGCTAAACTGCTAA 59.996 43.478 0.00 0.00 40.48 3.09
713 732 2.552315 GGTTGCTTGTGCTAAACTGCTA 59.448 45.455 0.00 0.00 40.48 3.49
714 733 1.338020 GGTTGCTTGTGCTAAACTGCT 59.662 47.619 0.00 0.00 40.48 4.24
715 734 1.602920 GGGTTGCTTGTGCTAAACTGC 60.603 52.381 0.00 0.00 40.48 4.40
716 735 1.000274 GGGGTTGCTTGTGCTAAACTG 60.000 52.381 0.00 0.00 40.48 3.16
717 736 1.328279 GGGGTTGCTTGTGCTAAACT 58.672 50.000 0.00 0.00 40.48 2.66
718 737 0.039527 CGGGGTTGCTTGTGCTAAAC 60.040 55.000 0.00 0.00 40.48 2.01
719 738 0.179015 TCGGGGTTGCTTGTGCTAAA 60.179 50.000 0.00 0.00 40.48 1.85
720 739 0.179015 TTCGGGGTTGCTTGTGCTAA 60.179 50.000 0.00 0.00 40.48 3.09
721 740 0.037590 ATTCGGGGTTGCTTGTGCTA 59.962 50.000 0.00 0.00 40.48 3.49
722 741 0.037590 TATTCGGGGTTGCTTGTGCT 59.962 50.000 0.00 0.00 40.48 4.40
723 742 0.885196 TTATTCGGGGTTGCTTGTGC 59.115 50.000 0.00 0.00 40.20 4.57
724 743 2.432444 TCTTATTCGGGGTTGCTTGTG 58.568 47.619 0.00 0.00 0.00 3.33
725 744 2.817844 GTTCTTATTCGGGGTTGCTTGT 59.182 45.455 0.00 0.00 0.00 3.16
726 745 2.163613 GGTTCTTATTCGGGGTTGCTTG 59.836 50.000 0.00 0.00 0.00 4.01
727 746 2.224917 TGGTTCTTATTCGGGGTTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
728 747 1.353022 TGGTTCTTATTCGGGGTTGCT 59.647 47.619 0.00 0.00 0.00 3.91
729 748 1.828979 TGGTTCTTATTCGGGGTTGC 58.171 50.000 0.00 0.00 0.00 4.17
730 749 2.490509 GGTTGGTTCTTATTCGGGGTTG 59.509 50.000 0.00 0.00 0.00 3.77
731 750 2.377531 AGGTTGGTTCTTATTCGGGGTT 59.622 45.455 0.00 0.00 0.00 4.11
755 774 3.628989 GGTGGGGCCCTTTTATGC 58.371 61.111 25.93 2.81 0.00 3.14
831 856 2.256117 AACAGGTTCAGGACGGAAAG 57.744 50.000 0.00 0.00 0.00 2.62
833 858 1.766496 AGAAACAGGTTCAGGACGGAA 59.234 47.619 0.00 0.00 38.86 4.30
843 868 3.217626 CTTGCCAGAGAAGAAACAGGTT 58.782 45.455 0.00 0.00 0.00 3.50
848 873 1.538950 CAGGCTTGCCAGAGAAGAAAC 59.461 52.381 14.54 0.00 0.00 2.78
881 906 0.382515 TGAAAACCAAAACGGCGAGG 59.617 50.000 16.62 12.35 39.03 4.63
883 908 1.950909 AGATGAAAACCAAAACGGCGA 59.049 42.857 16.62 0.00 39.03 5.54
895 920 3.600388 GAGAAAGAGCGGGAGATGAAAA 58.400 45.455 0.00 0.00 0.00 2.29
1426 1463 4.407365 AGTGGATTTTGGAGTGTAAAGGG 58.593 43.478 0.00 0.00 0.00 3.95
1494 1531 5.606348 TTTGTAACAAAAATGTGAGCCCT 57.394 34.783 0.00 0.00 0.00 5.19
1496 1533 9.220635 GAAAATTTTGTAACAAAAATGTGAGCC 57.779 29.630 8.47 0.00 39.20 4.70
1497 1534 8.932963 CGAAAATTTTGTAACAAAAATGTGAGC 58.067 29.630 8.47 0.00 39.20 4.26
1498 1535 9.419737 CCGAAAATTTTGTAACAAAAATGTGAG 57.580 29.630 8.47 2.39 39.20 3.51
1516 1553 3.993736 CGGGAAGCAAAAATCCGAAAATT 59.006 39.130 0.00 0.00 42.94 1.82
1560 1597 0.035915 TAGCTTGCATACACGGCCAA 60.036 50.000 2.24 0.00 0.00 4.52
1695 1732 2.158460 CCTTGTTCTTGAGAAGGGGGTT 60.158 50.000 0.00 0.00 43.40 4.11
1697 1734 2.206576 CCTTGTTCTTGAGAAGGGGG 57.793 55.000 0.00 0.00 43.40 5.40
1750 1787 3.386768 TCCAAGCACAGTAACAGAGTC 57.613 47.619 0.00 0.00 0.00 3.36
1787 1824 2.035576 CCACCTCCGCCATTACTACTAC 59.964 54.545 0.00 0.00 0.00 2.73
1838 1875 3.053395 ACAACATAACCATGGGCATCTCT 60.053 43.478 18.09 0.00 36.39 3.10
1874 1911 1.510623 CGCAACGACAAGCATCAGC 60.511 57.895 0.00 0.00 42.56 4.26
2111 2171 4.319177 CCGAGGACATGGGAGATTAATTC 58.681 47.826 0.00 0.00 0.00 2.17
2129 2189 3.257561 CCATCAGAACGCGCCGAG 61.258 66.667 5.73 0.00 0.00 4.63
2152 2216 2.515523 CCCTGCAATGGAGAGCCG 60.516 66.667 2.50 0.00 36.79 5.52
2155 2219 3.207669 GCGCCCTGCAATGGAGAG 61.208 66.667 2.50 0.00 45.45 3.20
2203 2267 1.595109 CCTGAGCGCGCCATCATAA 60.595 57.895 30.33 0.00 0.00 1.90
2233 2297 1.482593 AGGAATACCTTCAGTGAGCCG 59.517 52.381 0.00 0.00 45.36 5.52
2256 2320 4.023365 GCAAACTGAAACAGAGAGAGCAAT 60.023 41.667 5.76 0.00 35.18 3.56
2277 2341 2.094757 ATCGACACCCAACAGACGCA 62.095 55.000 0.00 0.00 0.00 5.24
2282 2346 3.980646 TTGAAAATCGACACCCAACAG 57.019 42.857 0.00 0.00 0.00 3.16
2283 2347 3.005261 CCATTGAAAATCGACACCCAACA 59.995 43.478 0.00 0.00 0.00 3.33
2284 2348 3.574614 CCATTGAAAATCGACACCCAAC 58.425 45.455 0.00 0.00 0.00 3.77
2286 2350 1.543802 GCCATTGAAAATCGACACCCA 59.456 47.619 0.00 0.00 0.00 4.51
2287 2351 1.135112 GGCCATTGAAAATCGACACCC 60.135 52.381 0.00 0.00 0.00 4.61
2288 2352 1.467374 CGGCCATTGAAAATCGACACC 60.467 52.381 2.24 0.00 0.00 4.16
2289 2353 1.199097 ACGGCCATTGAAAATCGACAC 59.801 47.619 2.24 0.00 0.00 3.67
2290 2354 1.198867 CACGGCCATTGAAAATCGACA 59.801 47.619 2.24 0.00 0.00 4.35
2292 2356 0.808125 CCACGGCCATTGAAAATCGA 59.192 50.000 2.24 0.00 0.00 3.59
2293 2357 0.525761 ACCACGGCCATTGAAAATCG 59.474 50.000 2.24 0.00 0.00 3.34
2294 2358 1.543802 TCACCACGGCCATTGAAAATC 59.456 47.619 2.24 0.00 0.00 2.17
2345 2448 2.315386 GCCCGGTGTCTTTGACGAC 61.315 63.158 0.00 0.00 34.95 4.34
2501 2604 1.451028 GCTGCTTCGCCTCTTGGAT 60.451 57.895 0.00 0.00 34.57 3.41
2536 2639 2.976350 TCGAGCACGACGACTGGT 60.976 61.111 0.88 0.00 43.81 4.00
2552 2655 3.343788 CTGCTCGGACGTCCTGGTC 62.344 68.421 30.92 17.36 36.18 4.02
2561 2664 2.811317 CGGCTGTTCTGCTCGGAC 60.811 66.667 2.15 0.00 0.00 4.79
2564 2667 2.507992 CTCCGGCTGTTCTGCTCG 60.508 66.667 0.00 4.33 0.00 5.03
3019 3122 3.008704 AGGGTACGCCTTATTTGTGAACT 59.991 43.478 6.27 0.00 34.45 3.01
3026 3129 0.916809 AGCCAGGGTACGCCTTATTT 59.083 50.000 6.27 0.00 34.45 1.40
3088 3191 2.045634 GCTCACATGGCAGCAGGA 60.046 61.111 12.11 0.00 35.56 3.86
3094 3197 0.179023 TCAACACTGCTCACATGGCA 60.179 50.000 0.00 0.00 38.10 4.92
3104 3207 1.604278 GAACCCTGTTCTCAACACTGC 59.396 52.381 0.00 0.00 36.25 4.40
3108 3211 1.843851 ACCTGAACCCTGTTCTCAACA 59.156 47.619 8.30 0.00 39.52 3.33
3109 3212 2.158813 TGACCTGAACCCTGTTCTCAAC 60.159 50.000 8.30 0.16 0.00 3.18
3110 3213 2.104792 CTGACCTGAACCCTGTTCTCAA 59.895 50.000 8.30 0.00 0.00 3.02
3111 3214 1.694150 CTGACCTGAACCCTGTTCTCA 59.306 52.381 8.30 3.62 0.00 3.27
3112 3215 1.694696 ACTGACCTGAACCCTGTTCTC 59.305 52.381 8.30 0.00 0.00 2.87
3113 3216 1.417890 CACTGACCTGAACCCTGTTCT 59.582 52.381 8.30 0.00 0.00 3.01
3114 3217 1.141053 ACACTGACCTGAACCCTGTTC 59.859 52.381 0.07 0.07 0.00 3.18
3115 3218 1.134098 CACACTGACCTGAACCCTGTT 60.134 52.381 0.00 0.00 0.00 3.16
3116 3219 0.469917 CACACTGACCTGAACCCTGT 59.530 55.000 0.00 0.00 0.00 4.00
3117 3220 0.469917 ACACACTGACCTGAACCCTG 59.530 55.000 0.00 0.00 0.00 4.45
3118 3221 0.759346 GACACACTGACCTGAACCCT 59.241 55.000 0.00 0.00 0.00 4.34
3119 3222 0.250338 GGACACACTGACCTGAACCC 60.250 60.000 0.00 0.00 0.00 4.11
3120 3223 0.250338 GGGACACACTGACCTGAACC 60.250 60.000 0.00 0.00 32.77 3.62
3121 3224 0.468226 TGGGACACACTGACCTGAAC 59.532 55.000 0.00 0.00 32.77 3.18
3122 3225 1.140852 CTTGGGACACACTGACCTGAA 59.859 52.381 0.00 0.00 39.29 3.02
3123 3226 0.758734 CTTGGGACACACTGACCTGA 59.241 55.000 0.00 0.00 39.29 3.86
3124 3227 0.758734 TCTTGGGACACACTGACCTG 59.241 55.000 0.00 0.00 39.29 4.00
3125 3228 0.759346 GTCTTGGGACACACTGACCT 59.241 55.000 0.00 0.00 39.29 3.85
3126 3229 0.250338 GGTCTTGGGACACACTGACC 60.250 60.000 11.84 11.84 43.77 4.02
3127 3230 0.250338 GGGTCTTGGGACACACTGAC 60.250 60.000 2.33 2.33 44.72 3.51
3128 3231 1.415672 GGGGTCTTGGGACACACTGA 61.416 60.000 0.87 0.00 46.98 3.41
3129 3232 1.073199 GGGGTCTTGGGACACACTG 59.927 63.158 0.87 0.00 46.98 3.66
3130 3233 0.991355 TTGGGGTCTTGGGACACACT 60.991 55.000 0.87 0.00 46.98 3.55
3131 3234 0.822121 GTTGGGGTCTTGGGACACAC 60.822 60.000 0.87 0.00 46.98 3.82
3132 3235 1.534697 GTTGGGGTCTTGGGACACA 59.465 57.895 0.87 0.00 46.98 3.72
3133 3236 1.599797 CGTTGGGGTCTTGGGACAC 60.600 63.158 0.00 0.00 44.62 3.67
3134 3237 1.764571 CTCGTTGGGGTCTTGGGACA 61.765 60.000 0.00 0.00 43.77 4.02
3135 3238 1.003718 CTCGTTGGGGTCTTGGGAC 60.004 63.158 0.00 0.00 41.43 4.46
3136 3239 2.221299 CCTCGTTGGGGTCTTGGGA 61.221 63.158 0.00 0.00 0.00 4.37
3137 3240 2.351276 CCTCGTTGGGGTCTTGGG 59.649 66.667 0.00 0.00 0.00 4.12
3146 3249 3.121738 ACTTTACTTCACCCTCGTTGG 57.878 47.619 0.00 0.00 0.00 3.77
3147 3250 5.295152 ACTAACTTTACTTCACCCTCGTTG 58.705 41.667 0.00 0.00 0.00 4.10
3148 3251 5.541953 ACTAACTTTACTTCACCCTCGTT 57.458 39.130 0.00 0.00 0.00 3.85
3149 3252 5.336293 GCTACTAACTTTACTTCACCCTCGT 60.336 44.000 0.00 0.00 0.00 4.18
3150 3253 5.100943 GCTACTAACTTTACTTCACCCTCG 58.899 45.833 0.00 0.00 0.00 4.63
3151 3254 5.100943 CGCTACTAACTTTACTTCACCCTC 58.899 45.833 0.00 0.00 0.00 4.30
3152 3255 4.081807 CCGCTACTAACTTTACTTCACCCT 60.082 45.833 0.00 0.00 0.00 4.34
3153 3256 4.179298 CCGCTACTAACTTTACTTCACCC 58.821 47.826 0.00 0.00 0.00 4.61
3154 3257 3.615937 GCCGCTACTAACTTTACTTCACC 59.384 47.826 0.00 0.00 0.00 4.02
3155 3258 4.240096 TGCCGCTACTAACTTTACTTCAC 58.760 43.478 0.00 0.00 0.00 3.18
3156 3259 4.021719 ACTGCCGCTACTAACTTTACTTCA 60.022 41.667 0.00 0.00 0.00 3.02
3157 3260 4.492611 ACTGCCGCTACTAACTTTACTTC 58.507 43.478 0.00 0.00 0.00 3.01
3158 3261 4.532314 ACTGCCGCTACTAACTTTACTT 57.468 40.909 0.00 0.00 0.00 2.24
3159 3262 4.532314 AACTGCCGCTACTAACTTTACT 57.468 40.909 0.00 0.00 0.00 2.24
3160 3263 4.450080 ACAAACTGCCGCTACTAACTTTAC 59.550 41.667 0.00 0.00 0.00 2.01
3161 3264 4.634199 ACAAACTGCCGCTACTAACTTTA 58.366 39.130 0.00 0.00 0.00 1.85
3162 3265 3.473625 ACAAACTGCCGCTACTAACTTT 58.526 40.909 0.00 0.00 0.00 2.66
3163 3266 3.121738 ACAAACTGCCGCTACTAACTT 57.878 42.857 0.00 0.00 0.00 2.66
3164 3267 2.833631 ACAAACTGCCGCTACTAACT 57.166 45.000 0.00 0.00 0.00 2.24
3165 3268 3.370061 CCTAACAAACTGCCGCTACTAAC 59.630 47.826 0.00 0.00 0.00 2.34
3166 3269 3.007182 ACCTAACAAACTGCCGCTACTAA 59.993 43.478 0.00 0.00 0.00 2.24
3167 3270 2.564062 ACCTAACAAACTGCCGCTACTA 59.436 45.455 0.00 0.00 0.00 1.82
3168 3271 1.346722 ACCTAACAAACTGCCGCTACT 59.653 47.619 0.00 0.00 0.00 2.57
3169 3272 1.804601 ACCTAACAAACTGCCGCTAC 58.195 50.000 0.00 0.00 0.00 3.58
3170 3273 2.550606 CAAACCTAACAAACTGCCGCTA 59.449 45.455 0.00 0.00 0.00 4.26
3171 3274 1.336755 CAAACCTAACAAACTGCCGCT 59.663 47.619 0.00 0.00 0.00 5.52
3172 3275 1.335496 TCAAACCTAACAAACTGCCGC 59.665 47.619 0.00 0.00 0.00 6.53
3173 3276 2.604614 GCTCAAACCTAACAAACTGCCG 60.605 50.000 0.00 0.00 0.00 5.69
3174 3277 2.623416 AGCTCAAACCTAACAAACTGCC 59.377 45.455 0.00 0.00 0.00 4.85
3175 3278 3.990318 AGCTCAAACCTAACAAACTGC 57.010 42.857 0.00 0.00 0.00 4.40
3176 3279 6.034898 CACAAAAGCTCAAACCTAACAAACTG 59.965 38.462 0.00 0.00 0.00 3.16
3177 3280 6.099341 CACAAAAGCTCAAACCTAACAAACT 58.901 36.000 0.00 0.00 0.00 2.66
3178 3281 5.290885 CCACAAAAGCTCAAACCTAACAAAC 59.709 40.000 0.00 0.00 0.00 2.93
3179 3282 5.046950 ACCACAAAAGCTCAAACCTAACAAA 60.047 36.000 0.00 0.00 0.00 2.83
3180 3283 4.464597 ACCACAAAAGCTCAAACCTAACAA 59.535 37.500 0.00 0.00 0.00 2.83
3202 3305 4.243270 ACTTTCTGACGGTAATAGCACAC 58.757 43.478 0.00 0.00 0.00 3.82
3203 3306 4.530710 ACTTTCTGACGGTAATAGCACA 57.469 40.909 0.00 0.00 0.00 4.57
3204 3307 5.648572 AGTACTTTCTGACGGTAATAGCAC 58.351 41.667 0.00 0.00 0.00 4.40
3237 3340 2.367567 ACACTTAACCAGTCACGGTCAT 59.632 45.455 0.00 0.00 38.76 3.06
3242 3345 4.807304 ACAACTTACACTTAACCAGTCACG 59.193 41.667 0.00 0.00 30.92 4.35
3249 3352 6.051074 ACACCAGTACAACTTACACTTAACC 58.949 40.000 0.00 0.00 0.00 2.85
3341 3450 2.659428 AGAAGATTGCCTATTGGTGCC 58.341 47.619 0.00 0.00 35.27 5.01
3346 3455 6.609533 GTGCATCATAGAAGATTGCCTATTG 58.390 40.000 0.00 0.00 0.00 1.90
3347 3456 5.410746 CGTGCATCATAGAAGATTGCCTATT 59.589 40.000 0.00 0.00 0.00 1.73
3364 3473 0.107703 TCCTGTTCCATCCGTGCATC 60.108 55.000 0.00 0.00 0.00 3.91
3365 3474 0.548031 ATCCTGTTCCATCCGTGCAT 59.452 50.000 0.00 0.00 0.00 3.96
3379 3488 2.809706 CCATGCGCCCAAATCCTG 59.190 61.111 4.18 0.00 0.00 3.86
3452 3561 2.450609 ATGTCACAGTGAACCGTACC 57.549 50.000 4.32 0.00 0.00 3.34
3453 3562 3.367025 GCTAATGTCACAGTGAACCGTAC 59.633 47.826 4.32 0.00 0.00 3.67
3454 3563 3.581755 GCTAATGTCACAGTGAACCGTA 58.418 45.455 4.32 0.00 0.00 4.02
3455 3564 2.413837 GCTAATGTCACAGTGAACCGT 58.586 47.619 4.32 0.00 0.00 4.83
3456 3565 1.732259 GGCTAATGTCACAGTGAACCG 59.268 52.381 4.32 0.00 0.00 4.44
3457 3566 2.744202 CTGGCTAATGTCACAGTGAACC 59.256 50.000 4.32 1.32 0.00 3.62
3458 3567 3.664107 TCTGGCTAATGTCACAGTGAAC 58.336 45.455 4.32 0.52 32.92 3.18
3459 3568 3.306989 CCTCTGGCTAATGTCACAGTGAA 60.307 47.826 4.32 0.00 32.92 3.18
3587 3696 5.521906 TTTAATTAACACAGGTTGCAGCA 57.478 34.783 2.05 0.00 37.88 4.41
3588 3697 4.385748 GCTTTAATTAACACAGGTTGCAGC 59.614 41.667 0.00 0.00 37.88 5.25
3589 3698 5.527951 TGCTTTAATTAACACAGGTTGCAG 58.472 37.500 0.00 0.00 37.88 4.41
3590 3699 5.068460 ACTGCTTTAATTAACACAGGTTGCA 59.932 36.000 21.85 11.63 37.88 4.08
3591 3700 5.528870 ACTGCTTTAATTAACACAGGTTGC 58.471 37.500 21.85 8.84 37.88 4.17
3592 3701 7.326063 GCTAACTGCTTTAATTAACACAGGTTG 59.674 37.037 21.85 18.75 36.91 3.77
3593 3702 7.368059 GCTAACTGCTTTAATTAACACAGGTT 58.632 34.615 21.85 17.05 38.68 3.50
3614 3723 1.134521 CAATGGCTACGGGACAGCTAA 60.135 52.381 0.00 0.00 35.79 3.09
3632 3741 5.806654 TGCATGCAGTAGTATAGATCCAA 57.193 39.130 18.46 0.00 0.00 3.53
3641 3750 0.752658 AGCCGATGCATGCAGTAGTA 59.247 50.000 26.69 0.16 41.13 1.82
3643 3752 1.504647 CCAGCCGATGCATGCAGTAG 61.505 60.000 26.69 18.10 41.13 2.57
3644 3753 1.524393 CCAGCCGATGCATGCAGTA 60.524 57.895 26.69 1.91 41.13 2.74
3645 3754 2.827190 CCAGCCGATGCATGCAGT 60.827 61.111 26.69 14.02 41.13 4.40
3646 3755 3.592814 CCCAGCCGATGCATGCAG 61.593 66.667 26.69 13.73 41.13 4.41
3650 3759 3.961225 TTTGCCCCAGCCGATGCAT 62.961 57.895 0.00 0.00 41.13 3.96
3652 3761 3.381136 TTTTGCCCCAGCCGATGC 61.381 61.111 0.00 0.00 38.69 3.91
3653 3762 2.274645 TGTTTTGCCCCAGCCGATG 61.275 57.895 0.00 0.00 38.69 3.84
3654 3763 2.117206 TGTTTTGCCCCAGCCGAT 59.883 55.556 0.00 0.00 38.69 4.18
3655 3764 2.909965 GTGTTTTGCCCCAGCCGA 60.910 61.111 0.00 0.00 38.69 5.54
3656 3765 3.211564 CTGTGTTTTGCCCCAGCCG 62.212 63.158 0.00 0.00 38.69 5.52
3657 3766 1.685355 AACTGTGTTTTGCCCCAGCC 61.685 55.000 0.00 0.00 38.69 4.85
3658 3767 0.249447 GAACTGTGTTTTGCCCCAGC 60.249 55.000 0.00 0.00 40.48 4.85
3659 3768 0.389025 GGAACTGTGTTTTGCCCCAG 59.611 55.000 0.00 0.00 0.00 4.45
3660 3769 0.324738 TGGAACTGTGTTTTGCCCCA 60.325 50.000 0.00 0.00 0.00 4.96
3661 3770 1.047801 ATGGAACTGTGTTTTGCCCC 58.952 50.000 0.00 0.00 0.00 5.80
3664 3773 3.530535 ACCAAATGGAACTGTGTTTTGC 58.469 40.909 6.42 0.00 38.94 3.68
3671 3780 1.416030 GGCCAAACCAAATGGAACTGT 59.584 47.619 6.42 0.00 40.56 3.55
3680 3789 2.658321 TTAGCCGGGGCCAAACCAAA 62.658 55.000 4.39 0.00 43.17 3.28
3681 3790 3.148184 TTAGCCGGGGCCAAACCAA 62.148 57.895 4.39 0.00 43.17 3.67
3682 3791 3.581338 TTAGCCGGGGCCAAACCA 61.581 61.111 4.39 0.00 43.17 3.67
3683 3792 2.200923 TAGTTAGCCGGGGCCAAACC 62.201 60.000 17.24 0.00 43.17 3.27
3684 3793 1.028330 GTAGTTAGCCGGGGCCAAAC 61.028 60.000 4.39 14.47 43.17 2.93
3695 3804 2.292845 ACGATAGAAGGCGGTAGTTAGC 59.707 50.000 0.00 0.00 41.38 3.09
3714 3823 2.803956 ACGGAATGGTGTCTTGTTTACG 59.196 45.455 0.00 0.00 0.00 3.18
3724 3833 0.541863 GGAGGATCACGGAATGGTGT 59.458 55.000 0.00 0.00 39.00 4.16
3727 3836 2.320781 AGTAGGAGGATCACGGAATGG 58.679 52.381 0.00 0.00 36.25 3.16
3743 3852 5.529791 CACATTCCCGTGTCCTATTAGTAG 58.470 45.833 0.00 0.00 32.00 2.57
3745 3854 3.431766 GCACATTCCCGTGTCCTATTAGT 60.432 47.826 0.00 0.00 39.19 2.24
3813 3952 3.545481 CGTCATCTGCACGCCGAC 61.545 66.667 0.00 0.00 0.00 4.79
3877 4016 1.198608 GATCGCTGTGCCGTACGTAC 61.199 60.000 15.90 15.90 0.00 3.67
3878 4017 1.063006 GATCGCTGTGCCGTACGTA 59.937 57.895 15.21 0.00 0.00 3.57
3879 4018 2.202570 GATCGCTGTGCCGTACGT 60.203 61.111 15.21 0.00 0.00 3.57
3880 4019 1.939785 GAGATCGCTGTGCCGTACG 60.940 63.158 8.69 8.69 0.00 3.67
3948 4093 4.778415 CTCACCGACGTCGCCCTG 62.778 72.222 31.73 23.48 38.18 4.45
3994 4172 0.250513 ATGGTCTCGGAAAGGTCAGC 59.749 55.000 0.00 0.00 0.00 4.26
4006 4184 4.931661 ATGATCAAATGGCAATGGTCTC 57.068 40.909 15.27 6.64 0.00 3.36
4016 4194 9.521503 CCACGAGTATAGTATATGATCAAATGG 57.478 37.037 0.00 0.00 0.00 3.16
4024 4202 4.948004 CAGCCCCACGAGTATAGTATATGA 59.052 45.833 0.00 0.00 0.00 2.15
4025 4203 4.098044 CCAGCCCCACGAGTATAGTATATG 59.902 50.000 0.00 0.00 0.00 1.78
4026 4204 4.279145 CCAGCCCCACGAGTATAGTATAT 58.721 47.826 0.00 0.00 0.00 0.86
4027 4205 3.693807 CCAGCCCCACGAGTATAGTATA 58.306 50.000 0.00 0.00 0.00 1.47
4028 4206 2.526432 CCAGCCCCACGAGTATAGTAT 58.474 52.381 0.00 0.00 0.00 2.12
4029 4207 1.991121 CCAGCCCCACGAGTATAGTA 58.009 55.000 0.00 0.00 0.00 1.82
4030 4208 1.400530 GCCAGCCCCACGAGTATAGT 61.401 60.000 0.00 0.00 0.00 2.12
4031 4209 1.115930 AGCCAGCCCCACGAGTATAG 61.116 60.000 0.00 0.00 0.00 1.31
4032 4210 1.075525 AGCCAGCCCCACGAGTATA 60.076 57.895 0.00 0.00 0.00 1.47
4033 4211 2.365635 AGCCAGCCCCACGAGTAT 60.366 61.111 0.00 0.00 0.00 2.12
4034 4212 3.390521 CAGCCAGCCCCACGAGTA 61.391 66.667 0.00 0.00 0.00 2.59
4036 4214 2.826777 AATTCAGCCAGCCCCACGAG 62.827 60.000 0.00 0.00 0.00 4.18
4037 4215 1.558167 TAATTCAGCCAGCCCCACGA 61.558 55.000 0.00 0.00 0.00 4.35
4038 4216 1.077787 TAATTCAGCCAGCCCCACG 60.078 57.895 0.00 0.00 0.00 4.94
4039 4217 0.753111 CCTAATTCAGCCAGCCCCAC 60.753 60.000 0.00 0.00 0.00 4.61
4040 4218 1.614711 CCTAATTCAGCCAGCCCCA 59.385 57.895 0.00 0.00 0.00 4.96
4041 4219 1.829970 GCCTAATTCAGCCAGCCCC 60.830 63.158 0.00 0.00 0.00 5.80
4042 4220 3.847621 GCCTAATTCAGCCAGCCC 58.152 61.111 0.00 0.00 0.00 5.19
4048 4226 2.485657 GGTGGAGTAGGCCTAATTCAGC 60.486 54.545 29.24 29.24 31.37 4.26
4049 4227 2.224066 CGGTGGAGTAGGCCTAATTCAG 60.224 54.545 21.58 7.39 0.00 3.02
4050 4228 1.760613 CGGTGGAGTAGGCCTAATTCA 59.239 52.381 17.39 17.39 0.00 2.57
4051 4229 1.540580 GCGGTGGAGTAGGCCTAATTC 60.541 57.143 15.83 13.66 0.00 2.17
4052 4230 0.468648 GCGGTGGAGTAGGCCTAATT 59.531 55.000 15.83 5.82 0.00 1.40
4053 4231 1.745320 CGCGGTGGAGTAGGCCTAAT 61.745 60.000 15.83 14.73 0.00 1.73
4054 4232 2.420568 CGCGGTGGAGTAGGCCTAA 61.421 63.158 15.83 0.00 0.00 2.69
4055 4233 2.831742 CGCGGTGGAGTAGGCCTA 60.832 66.667 8.91 8.91 0.00 3.93
4057 4235 4.814294 CACGCGGTGGAGTAGGCC 62.814 72.222 12.47 0.00 0.00 5.19
4058 4236 2.955751 GATCACGCGGTGGAGTAGGC 62.956 65.000 12.47 0.00 33.87 3.93
4059 4237 1.065928 GATCACGCGGTGGAGTAGG 59.934 63.158 12.47 0.00 33.87 3.18
4060 4238 1.065928 GGATCACGCGGTGGAGTAG 59.934 63.158 12.47 0.00 33.87 2.57
4061 4239 0.107066 TAGGATCACGCGGTGGAGTA 60.107 55.000 12.47 0.00 33.87 2.59
4062 4240 0.755698 ATAGGATCACGCGGTGGAGT 60.756 55.000 12.47 0.00 33.87 3.85
4063 4241 0.039074 GATAGGATCACGCGGTGGAG 60.039 60.000 12.47 0.00 33.87 3.86
4064 4242 1.461091 GGATAGGATCACGCGGTGGA 61.461 60.000 12.47 5.31 33.87 4.02
4065 4243 1.006102 GGATAGGATCACGCGGTGG 60.006 63.158 12.47 0.00 33.87 4.61
4066 4244 0.319040 CAGGATAGGATCACGCGGTG 60.319 60.000 12.47 6.71 34.45 4.94
4067 4245 0.755698 ACAGGATAGGATCACGCGGT 60.756 55.000 12.47 0.00 0.00 5.68
4068 4246 2.041976 ACAGGATAGGATCACGCGG 58.958 57.895 12.47 0.00 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.