Multiple sequence alignment - TraesCS2D01G398000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G398000 chr2D 100.000 4389 0 0 1 4389 509952622 509957010 0.000000e+00 8106.0
1 TraesCS2D01G398000 chr2D 91.808 708 46 6 1 704 286455210 286454511 0.000000e+00 976.0
2 TraesCS2D01G398000 chr2D 77.344 128 24 4 4260 4384 114815389 114815514 2.190000e-08 71.3
3 TraesCS2D01G398000 chr2A 95.026 2352 70 24 2041 4389 653687437 653689744 0.000000e+00 3651.0
4 TraesCS2D01G398000 chr2A 92.910 677 27 12 980 1647 653686192 653686856 0.000000e+00 965.0
5 TraesCS2D01G398000 chr2A 93.333 195 6 2 1793 1983 653686898 653687089 9.290000e-72 281.0
6 TraesCS2D01G398000 chr2A 90.083 121 7 2 1668 1783 748822474 748822354 7.600000e-33 152.0
7 TraesCS2D01G398000 chr2A 92.857 42 2 1 3612 3653 8561560 8561520 4.740000e-05 60.2
8 TraesCS2D01G398000 chr2B 90.294 1226 60 16 1793 2993 599666340 599667531 0.000000e+00 1550.0
9 TraesCS2D01G398000 chr2B 87.408 953 63 31 723 1664 599665409 599666315 0.000000e+00 1042.0
10 TraesCS2D01G398000 chr2B 96.178 628 19 3 3040 3665 599667536 599668160 0.000000e+00 1022.0
11 TraesCS2D01G398000 chr2B 86.966 445 36 9 266 707 774960250 774960675 8.540000e-132 481.0
12 TraesCS2D01G398000 chr2B 91.667 120 3 4 1669 1781 475485531 475485650 4.540000e-35 159.0
13 TraesCS2D01G398000 chr2B 97.561 41 1 0 723 763 599663649 599663689 2.190000e-08 71.3
14 TraesCS2D01G398000 chr4D 91.972 710 46 5 1 707 462814076 462814777 0.000000e+00 985.0
15 TraesCS2D01G398000 chr4D 86.628 172 20 3 3650 3819 117421182 117421352 2.080000e-43 187.0
16 TraesCS2D01G398000 chr4D 90.833 120 6 2 1666 1780 17759567 17759686 5.880000e-34 156.0
17 TraesCS2D01G398000 chr1D 91.525 708 51 5 1 707 60167851 60167152 0.000000e+00 966.0
18 TraesCS2D01G398000 chr1D 91.255 709 49 6 1 707 77646769 77647466 0.000000e+00 953.0
19 TraesCS2D01G398000 chr1D 87.719 171 18 3 3652 3820 286378489 286378320 3.460000e-46 196.0
20 TraesCS2D01G398000 chr7A 91.384 708 56 3 1 707 59428450 59427747 0.000000e+00 965.0
21 TraesCS2D01G398000 chr3A 91.384 708 54 2 2 709 11897486 11898186 0.000000e+00 963.0
22 TraesCS2D01G398000 chr3A 88.462 130 8 4 1659 1781 583676569 583676698 2.730000e-32 150.0
23 TraesCS2D01G398000 chr5D 90.616 714 54 6 1 707 105117110 105116403 0.000000e+00 935.0
24 TraesCS2D01G398000 chr5D 88.957 163 15 3 3658 3819 495547271 495547111 9.630000e-47 198.0
25 TraesCS2D01G398000 chr5A 90.563 710 53 9 1 704 208808231 208808932 0.000000e+00 928.0
26 TraesCS2D01G398000 chr5A 87.356 174 19 3 3652 3823 320214237 320214409 3.460000e-46 196.0
27 TraesCS2D01G398000 chr3D 90.295 711 48 9 1 708 446117712 446117020 0.000000e+00 911.0
28 TraesCS2D01G398000 chr3D 88.372 172 18 2 3658 3828 549066952 549066782 5.750000e-49 206.0
29 TraesCS2D01G398000 chr3D 87.135 171 20 2 3657 3826 552772517 552772348 4.480000e-45 193.0
30 TraesCS2D01G398000 chr3D 90.164 122 7 2 1671 1787 434177498 434177619 2.110000e-33 154.0
31 TraesCS2D01G398000 chr3B 91.781 146 10 2 536 681 817862155 817862012 7.440000e-48 202.0
32 TraesCS2D01G398000 chr7B 88.554 166 17 2 3658 3822 102234317 102234481 2.680000e-47 200.0
33 TraesCS2D01G398000 chr7D 87.500 168 19 2 3658 3824 397554916 397555082 4.480000e-45 193.0
34 TraesCS2D01G398000 chr7D 94.690 113 0 3 1678 1785 364631128 364631239 2.100000e-38 171.0
35 TraesCS2D01G398000 chr6D 93.162 117 2 3 1670 1780 3196498 3196382 2.720000e-37 167.0
36 TraesCS2D01G398000 chr6A 92.920 113 3 2 1678 1785 542057056 542057168 4.540000e-35 159.0
37 TraesCS2D01G398000 chr6B 91.379 116 5 2 1670 1780 120355388 120355503 2.110000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G398000 chr2D 509952622 509957010 4388 False 8106.000000 8106 100.000000 1 4389 1 chr2D.!!$F2 4388
1 TraesCS2D01G398000 chr2D 286454511 286455210 699 True 976.000000 976 91.808000 1 704 1 chr2D.!!$R1 703
2 TraesCS2D01G398000 chr2A 653686192 653689744 3552 False 1632.333333 3651 93.756333 980 4389 3 chr2A.!!$F1 3409
3 TraesCS2D01G398000 chr2B 599663649 599668160 4511 False 921.325000 1550 92.860250 723 3665 4 chr2B.!!$F3 2942
4 TraesCS2D01G398000 chr4D 462814076 462814777 701 False 985.000000 985 91.972000 1 707 1 chr4D.!!$F3 706
5 TraesCS2D01G398000 chr1D 60167152 60167851 699 True 966.000000 966 91.525000 1 707 1 chr1D.!!$R1 706
6 TraesCS2D01G398000 chr1D 77646769 77647466 697 False 953.000000 953 91.255000 1 707 1 chr1D.!!$F1 706
7 TraesCS2D01G398000 chr7A 59427747 59428450 703 True 965.000000 965 91.384000 1 707 1 chr7A.!!$R1 706
8 TraesCS2D01G398000 chr3A 11897486 11898186 700 False 963.000000 963 91.384000 2 709 1 chr3A.!!$F1 707
9 TraesCS2D01G398000 chr5D 105116403 105117110 707 True 935.000000 935 90.616000 1 707 1 chr5D.!!$R1 706
10 TraesCS2D01G398000 chr5A 208808231 208808932 701 False 928.000000 928 90.563000 1 704 1 chr5A.!!$F1 703
11 TraesCS2D01G398000 chr3D 446117020 446117712 692 True 911.000000 911 90.295000 1 708 1 chr3D.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 415 0.248990 GGTGAGCGCAGATCTCTGAG 60.249 60.0 11.47 8.85 46.78 3.35 F
1158 2952 0.036294 CGTTCCAGTTCTTCTCCCCC 60.036 60.0 0.00 0.00 0.00 5.40 F
2066 4158 0.036388 TTTCAGGGACGGATGAGTGC 60.036 55.0 0.00 0.00 29.39 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 3470 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.0 46.06 2.73 R
2946 5040 0.038744 AGTTGGGCATTGAGGTCCAG 59.961 55.000 0.00 0.0 44.71 3.86 R
3826 5925 1.206371 GGAGAAACTTACTAGGCCGCA 59.794 52.381 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 88 3.111098 CCGTCGTAGGTATTTGCTACAC 58.889 50.000 0.00 0.00 31.44 2.90
161 173 1.871039 GAGCTACAACCAGCGAAAACA 59.129 47.619 0.00 0.00 46.52 2.83
162 174 2.289547 GAGCTACAACCAGCGAAAACAA 59.710 45.455 0.00 0.00 46.52 2.83
172 184 1.106933 GCGAAAACAACGACGTTTCC 58.893 50.000 11.24 0.00 38.13 3.13
400 415 0.248990 GGTGAGCGCAGATCTCTGAG 60.249 60.000 11.47 8.85 46.78 3.35
405 420 2.014064 GCGCAGATCTCTGAGGAGCA 62.014 60.000 11.34 0.00 46.59 4.26
451 466 4.514577 CGCGGATCTCGGGCAAGT 62.515 66.667 0.00 0.00 44.45 3.16
709 727 3.850095 GAGCCTAGCGTCGCCCATC 62.850 68.421 14.86 1.67 0.00 3.51
710 728 4.971125 GCCTAGCGTCGCCCATCC 62.971 72.222 14.86 0.00 0.00 3.51
711 729 3.536917 CCTAGCGTCGCCCATCCA 61.537 66.667 14.86 0.00 0.00 3.41
712 730 2.028190 CTAGCGTCGCCCATCCAG 59.972 66.667 14.86 0.00 0.00 3.86
713 731 4.221422 TAGCGTCGCCCATCCAGC 62.221 66.667 14.86 0.00 0.00 4.85
716 734 2.514592 CGTCGCCCATCCAGCATT 60.515 61.111 0.00 0.00 0.00 3.56
717 735 2.827051 CGTCGCCCATCCAGCATTG 61.827 63.158 0.00 0.00 0.00 2.82
718 736 2.829914 TCGCCCATCCAGCATTGC 60.830 61.111 0.00 0.00 0.00 3.56
719 737 3.908081 CGCCCATCCAGCATTGCC 61.908 66.667 4.70 0.00 0.00 4.52
720 738 2.760799 GCCCATCCAGCATTGCCA 60.761 61.111 4.70 0.00 0.00 4.92
721 739 2.792947 GCCCATCCAGCATTGCCAG 61.793 63.158 4.70 0.00 0.00 4.85
726 744 1.610554 ATCCAGCATTGCCAGTTGCC 61.611 55.000 4.70 0.00 39.72 4.52
763 781 2.092968 AGTCAAGCAACCACTGTTCTCA 60.093 45.455 0.00 0.00 30.42 3.27
764 782 2.289002 GTCAAGCAACCACTGTTCTCAG 59.711 50.000 0.00 0.00 46.18 3.35
787 2561 4.514066 GTCCTCACAACCTTTACGTTTGAT 59.486 41.667 0.00 0.00 0.00 2.57
812 2586 2.835431 CACCCAAACCACGCCCAA 60.835 61.111 0.00 0.00 0.00 4.12
839 2613 1.852895 GTCCGCTGCTCTTTACATACG 59.147 52.381 0.00 0.00 0.00 3.06
888 2670 0.782384 GTTATCCGTTAGCCGATGCG 59.218 55.000 0.00 0.00 44.33 4.73
926 2708 3.303132 CGATCGATCACACGAGACATGTA 60.303 47.826 24.40 0.00 45.22 2.29
929 2711 3.309954 TCGATCACACGAGACATGTAGAG 59.690 47.826 0.00 0.00 37.37 2.43
931 2713 4.024472 CGATCACACGAGACATGTAGAGAT 60.024 45.833 0.00 0.00 35.09 2.75
932 2714 4.622701 TCACACGAGACATGTAGAGATG 57.377 45.455 0.00 0.00 0.00 2.90
933 2715 3.378427 TCACACGAGACATGTAGAGATGG 59.622 47.826 0.00 0.00 0.00 3.51
934 2716 3.378427 CACACGAGACATGTAGAGATGGA 59.622 47.826 0.00 0.00 0.00 3.41
935 2717 3.378742 ACACGAGACATGTAGAGATGGAC 59.621 47.826 0.00 0.00 0.00 4.02
937 2719 2.603412 CGAGACATGTAGAGATGGACGC 60.603 54.545 0.00 0.00 0.00 5.19
939 2721 1.683917 GACATGTAGAGATGGACGCCT 59.316 52.381 0.00 0.00 0.00 5.52
940 2722 2.101582 GACATGTAGAGATGGACGCCTT 59.898 50.000 0.00 0.00 0.00 4.35
941 2723 2.159043 ACATGTAGAGATGGACGCCTTG 60.159 50.000 0.00 0.00 0.00 3.61
942 2724 0.824109 TGTAGAGATGGACGCCTTGG 59.176 55.000 0.00 0.00 0.00 3.61
943 2725 0.530870 GTAGAGATGGACGCCTTGGC 60.531 60.000 0.75 0.75 0.00 4.52
944 2726 2.016393 TAGAGATGGACGCCTTGGCG 62.016 60.000 29.32 29.32 39.31 5.69
945 2727 4.473520 AGATGGACGCCTTGGCGG 62.474 66.667 32.83 17.77 37.53 6.13
960 2742 1.666209 GGCGGCCATGCACTGTATTT 61.666 55.000 15.62 0.00 36.28 1.40
972 2754 4.746115 TGCACTGTATTTAGTTCGTCGTTT 59.254 37.500 0.00 0.00 0.00 3.60
973 2755 5.919707 TGCACTGTATTTAGTTCGTCGTTTA 59.080 36.000 0.00 0.00 0.00 2.01
975 2757 6.129115 GCACTGTATTTAGTTCGTCGTTTACA 60.129 38.462 0.00 0.00 0.00 2.41
985 2767 0.651326 GTCGTTTACACGCGCGTTTT 60.651 50.000 35.90 25.25 46.70 2.43
994 2776 1.131826 CGCGCGTTTTCAACCTAGG 59.868 57.895 24.19 7.41 0.00 3.02
999 2781 2.921754 CGCGTTTTCAACCTAGGTAGAG 59.078 50.000 16.67 8.72 0.00 2.43
1001 2783 4.677250 CGCGTTTTCAACCTAGGTAGAGAT 60.677 45.833 16.67 0.00 0.00 2.75
1002 2784 4.567159 GCGTTTTCAACCTAGGTAGAGATG 59.433 45.833 16.67 9.66 0.00 2.90
1003 2785 5.109903 CGTTTTCAACCTAGGTAGAGATGG 58.890 45.833 16.67 0.00 0.00 3.51
1004 2786 5.105473 CGTTTTCAACCTAGGTAGAGATGGA 60.105 44.000 16.67 0.26 0.00 3.41
1005 2787 6.573680 CGTTTTCAACCTAGGTAGAGATGGAA 60.574 42.308 16.67 7.54 0.00 3.53
1006 2788 5.934402 TTCAACCTAGGTAGAGATGGAAC 57.066 43.478 16.67 0.00 0.00 3.62
1009 2797 2.240279 CCTAGGTAGAGATGGAACCCG 58.760 57.143 0.00 0.00 0.00 5.28
1158 2952 0.036294 CGTTCCAGTTCTTCTCCCCC 60.036 60.000 0.00 0.00 0.00 5.40
1214 3008 1.589196 GGCTCACGAGGTACGCATC 60.589 63.158 0.00 0.00 46.94 3.91
1269 3063 1.405105 CGGATTACATGGGCCAGTTTG 59.595 52.381 13.78 8.39 0.00 2.93
1275 3069 3.386932 ACATGGGCCAGTTTGTCATAT 57.613 42.857 13.78 0.00 0.00 1.78
1288 3082 5.648092 AGTTTGTCATATAGGCTTTGGTGAC 59.352 40.000 14.04 14.04 37.18 3.67
1290 3084 3.521531 TGTCATATAGGCTTTGGTGACCA 59.478 43.478 0.00 0.00 36.14 4.02
1298 3092 2.625790 GGCTTTGGTGACCATTTGTGTA 59.374 45.455 4.56 0.00 31.53 2.90
1305 3099 3.370978 GGTGACCATTTGTGTACGAGATG 59.629 47.826 0.00 0.00 0.00 2.90
1307 3101 3.993736 TGACCATTTGTGTACGAGATGTG 59.006 43.478 0.00 0.00 0.00 3.21
1309 3103 5.142061 ACCATTTGTGTACGAGATGTGTA 57.858 39.130 0.00 0.00 0.00 2.90
1310 3104 5.730550 ACCATTTGTGTACGAGATGTGTAT 58.269 37.500 0.00 0.00 0.00 2.29
1311 3105 6.869695 ACCATTTGTGTACGAGATGTGTATA 58.130 36.000 0.00 0.00 0.00 1.47
1410 3204 2.209809 TTCCAGCAGGAGGGGGAA 59.790 61.111 0.00 0.00 46.74 3.97
1479 3273 1.079127 CAACGTCGGGGAGCAGAAT 60.079 57.895 0.00 0.00 0.00 2.40
1480 3274 1.084370 CAACGTCGGGGAGCAGAATC 61.084 60.000 0.00 0.00 0.00 2.52
1482 3276 2.893398 GTCGGGGAGCAGAATCGT 59.107 61.111 0.00 0.00 0.00 3.73
1507 3301 4.152402 CCATGTTCAAGTACCTCAAGAACG 59.848 45.833 0.00 0.00 40.95 3.95
1648 3442 1.874345 CGTCTCCACCGTAAGCCTGT 61.874 60.000 0.00 0.00 0.00 4.00
1654 3448 1.270625 CCACCGTAAGCCTGTTCTTCA 60.271 52.381 0.00 0.00 0.00 3.02
1659 3453 2.542595 CGTAAGCCTGTTCTTCAAACGT 59.457 45.455 0.00 0.00 0.00 3.99
1664 3458 4.448210 AGCCTGTTCTTCAAACGTTCTAA 58.552 39.130 0.00 0.00 0.00 2.10
1665 3459 4.272748 AGCCTGTTCTTCAAACGTTCTAAC 59.727 41.667 0.00 3.00 0.00 2.34
1681 3475 7.518731 CGTTCTAACGTTCTAGACTAGTACT 57.481 40.000 2.82 0.00 46.63 2.73
1682 3476 7.608755 CGTTCTAACGTTCTAGACTAGTACTC 58.391 42.308 2.82 0.00 46.63 2.59
1683 3477 7.253950 CGTTCTAACGTTCTAGACTAGTACTCC 60.254 44.444 2.82 0.00 46.63 3.85
1684 3478 6.578023 TCTAACGTTCTAGACTAGTACTCCC 58.422 44.000 2.82 0.00 0.00 4.30
1685 3479 5.434182 AACGTTCTAGACTAGTACTCCCT 57.566 43.478 14.95 0.00 0.00 4.20
1686 3480 5.022282 ACGTTCTAGACTAGTACTCCCTC 57.978 47.826 14.95 0.00 0.00 4.30
1687 3481 4.141733 ACGTTCTAGACTAGTACTCCCTCC 60.142 50.000 14.95 0.00 0.00 4.30
1688 3482 4.379652 GTTCTAGACTAGTACTCCCTCCG 58.620 52.174 9.33 0.00 0.00 4.63
1689 3483 3.652055 TCTAGACTAGTACTCCCTCCGT 58.348 50.000 9.33 0.00 0.00 4.69
1690 3484 4.036518 TCTAGACTAGTACTCCCTCCGTT 58.963 47.826 9.33 0.00 0.00 4.44
1691 3485 3.280197 AGACTAGTACTCCCTCCGTTC 57.720 52.381 0.00 0.00 0.00 3.95
1692 3486 1.939255 GACTAGTACTCCCTCCGTTCG 59.061 57.143 0.00 0.00 0.00 3.95
1693 3487 1.307097 CTAGTACTCCCTCCGTTCGG 58.693 60.000 0.00 4.74 0.00 4.30
1694 3488 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
1695 3489 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1696 3490 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1697 3491 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1698 3492 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1699 3493 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1700 3494 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1701 3495 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1702 3496 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1703 3497 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1704 3498 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1705 3499 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1706 3500 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1707 3501 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
1708 3502 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
1709 3503 3.612860 CGTTCGGAATTACTTGTCTCAGG 59.387 47.826 0.00 0.00 0.00 3.86
1710 3504 4.617530 CGTTCGGAATTACTTGTCTCAGGA 60.618 45.833 0.00 0.00 0.00 3.86
1711 3505 5.420409 GTTCGGAATTACTTGTCTCAGGAT 58.580 41.667 0.00 0.00 0.00 3.24
1712 3506 5.011090 TCGGAATTACTTGTCTCAGGATG 57.989 43.478 0.00 0.00 37.54 3.51
1713 3507 4.466370 TCGGAATTACTTGTCTCAGGATGT 59.534 41.667 0.00 0.00 37.40 3.06
1714 3508 5.655090 TCGGAATTACTTGTCTCAGGATGTA 59.345 40.000 0.00 0.00 37.40 2.29
1715 3509 6.323996 TCGGAATTACTTGTCTCAGGATGTAT 59.676 38.462 0.00 0.00 37.40 2.29
1716 3510 6.422100 CGGAATTACTTGTCTCAGGATGTATG 59.578 42.308 0.00 0.00 37.40 2.39
1717 3511 7.275920 GGAATTACTTGTCTCAGGATGTATGT 58.724 38.462 0.00 0.00 37.40 2.29
1718 3512 8.421784 GGAATTACTTGTCTCAGGATGTATGTA 58.578 37.037 0.00 0.00 37.40 2.29
1719 3513 9.469807 GAATTACTTGTCTCAGGATGTATGTAG 57.530 37.037 0.00 0.00 37.40 2.74
1720 3514 8.768501 ATTACTTGTCTCAGGATGTATGTAGA 57.231 34.615 0.00 0.00 37.40 2.59
1721 3515 8.589701 TTACTTGTCTCAGGATGTATGTAGAA 57.410 34.615 0.00 0.00 37.40 2.10
1722 3516 6.868622 ACTTGTCTCAGGATGTATGTAGAAC 58.131 40.000 0.00 0.00 37.40 3.01
1723 3517 6.665680 ACTTGTCTCAGGATGTATGTAGAACT 59.334 38.462 0.00 0.00 37.40 3.01
1724 3518 7.834681 ACTTGTCTCAGGATGTATGTAGAACTA 59.165 37.037 0.00 0.00 37.40 2.24
1725 3519 8.589701 TTGTCTCAGGATGTATGTAGAACTAA 57.410 34.615 0.00 0.00 37.40 2.24
1726 3520 8.589701 TGTCTCAGGATGTATGTAGAACTAAA 57.410 34.615 0.00 0.00 37.40 1.85
1727 3521 9.031537 TGTCTCAGGATGTATGTAGAACTAAAA 57.968 33.333 0.00 0.00 37.40 1.52
1731 3525 9.961265 TCAGGATGTATGTAGAACTAAAATACG 57.039 33.333 0.00 0.00 37.40 3.06
1732 3526 9.745880 CAGGATGTATGTAGAACTAAAATACGT 57.254 33.333 0.00 0.00 0.00 3.57
1733 3527 9.962783 AGGATGTATGTAGAACTAAAATACGTC 57.037 33.333 18.12 18.12 0.00 4.34
1734 3528 9.962783 GGATGTATGTAGAACTAAAATACGTCT 57.037 33.333 21.43 0.00 32.61 4.18
1750 3544 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
1751 3545 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
1752 3546 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
1753 3547 3.921021 GTCTAGATACATCCATTTCCGCG 59.079 47.826 0.00 0.00 0.00 6.46
1754 3548 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
1755 3549 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
1756 3550 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
1757 3551 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
1758 3552 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
1759 3553 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
1760 3554 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
1761 3555 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
1762 3556 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
1763 3557 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
1764 3558 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
1765 3559 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
1766 3560 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
1767 3561 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
1768 3562 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
1769 3563 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
1770 3564 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
1771 3565 1.987770 GCGACAAGTAATTCCGAACGA 59.012 47.619 0.00 0.00 0.00 3.85
1772 3566 2.409378 GCGACAAGTAATTCCGAACGAA 59.591 45.455 0.00 0.00 34.14 3.85
1773 3567 3.481467 GCGACAAGTAATTCCGAACGAAG 60.481 47.826 0.00 0.00 32.78 3.79
1774 3568 3.060363 CGACAAGTAATTCCGAACGAAGG 59.940 47.826 0.00 0.00 32.78 3.46
1777 3571 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
1783 3577 5.803237 ATTCCGAACGAAGGGAGTATTAT 57.197 39.130 0.00 0.00 32.78 1.28
1800 3601 9.436957 GGAGTATTATACATGGTATTCAGGTTG 57.563 37.037 5.11 0.00 41.07 3.77
1816 3617 1.802365 GGTTGTGTTGCTACCTTACGG 59.198 52.381 0.00 0.00 39.42 4.02
1818 3619 2.157834 TGTGTTGCTACCTTACGGTG 57.842 50.000 0.10 0.00 45.18 4.94
1819 3620 1.413445 TGTGTTGCTACCTTACGGTGT 59.587 47.619 0.10 0.00 45.18 4.16
1820 3621 2.627221 TGTGTTGCTACCTTACGGTGTA 59.373 45.455 0.10 0.00 45.18 2.90
1821 3622 3.069300 TGTGTTGCTACCTTACGGTGTAA 59.931 43.478 0.10 0.00 45.18 2.41
1827 3629 5.172934 TGCTACCTTACGGTGTAATTTGAG 58.827 41.667 0.10 0.00 45.18 3.02
1961 3763 1.277557 CTCTACTTGCCAGGAACAGCT 59.722 52.381 0.00 0.00 0.00 4.24
1994 3796 0.735978 TGCAGGTGCGTATCACGAAG 60.736 55.000 2.35 0.00 46.05 3.79
1995 3797 0.736325 GCAGGTGCGTATCACGAAGT 60.736 55.000 2.35 0.00 46.05 3.01
1997 3799 0.179171 AGGTGCGTATCACGAAGTCG 60.179 55.000 2.35 0.00 46.05 4.18
1998 3800 1.138047 GGTGCGTATCACGAAGTCGG 61.138 60.000 5.60 0.00 46.05 4.79
1999 3801 1.515519 TGCGTATCACGAAGTCGGC 60.516 57.895 5.60 0.00 46.05 5.54
2019 3839 0.245266 CTGTTCAGCCATGCATGCAA 59.755 50.000 26.68 8.49 0.00 4.08
2020 3840 0.038067 TGTTCAGCCATGCATGCAAC 60.038 50.000 26.68 16.64 0.00 4.17
2022 3842 0.899019 TTCAGCCATGCATGCAACAT 59.101 45.000 26.68 5.25 0.00 2.71
2024 3844 0.108377 CAGCCATGCATGCAACATGT 60.108 50.000 26.68 4.34 42.74 3.21
2031 3851 4.870991 CCATGCATGCAACATGTTCATTAA 59.129 37.500 26.68 6.51 42.74 1.40
2032 3852 5.525745 CCATGCATGCAACATGTTCATTAAT 59.474 36.000 26.68 0.00 42.74 1.40
2033 3853 6.037720 CCATGCATGCAACATGTTCATTAATT 59.962 34.615 26.68 0.00 42.74 1.40
2034 3854 7.414651 CCATGCATGCAACATGTTCATTAATTT 60.415 33.333 26.68 0.00 42.74 1.82
2035 3855 6.832804 TGCATGCAACATGTTCATTAATTTG 58.167 32.000 20.30 5.63 0.00 2.32
2037 3857 7.041303 TGCATGCAACATGTTCATTAATTTGTT 60.041 29.630 20.30 0.00 0.00 2.83
2038 3858 7.479291 GCATGCAACATGTTCATTAATTTGTTC 59.521 33.333 14.21 0.00 0.00 3.18
2039 3859 7.418840 TGCAACATGTTCATTAATTTGTTCC 57.581 32.000 8.48 0.00 0.00 3.62
2040 3860 6.145209 TGCAACATGTTCATTAATTTGTTCCG 59.855 34.615 8.48 0.00 0.00 4.30
2042 3862 7.410728 GCAACATGTTCATTAATTTGTTCCGAG 60.411 37.037 8.48 0.00 0.00 4.63
2044 3864 7.305474 ACATGTTCATTAATTTGTTCCGAGTC 58.695 34.615 0.00 0.00 0.00 3.36
2066 4158 0.036388 TTTCAGGGACGGATGAGTGC 60.036 55.000 0.00 0.00 29.39 4.40
2196 4288 1.672356 CACCAAGGAGAAGCCGGTG 60.672 63.158 1.90 0.00 40.37 4.94
2313 4405 2.126031 GACAACCCTCGCGTCCTC 60.126 66.667 5.77 0.00 0.00 3.71
2324 4416 2.485795 GCGTCCTCGAGGAGCTCAT 61.486 63.158 34.41 8.81 46.49 2.90
2332 4424 1.064685 TCGAGGAGCTCATGGTGAGTA 60.065 52.381 17.19 0.00 45.94 2.59
2333 4425 1.959985 CGAGGAGCTCATGGTGAGTAT 59.040 52.381 17.19 0.00 45.94 2.12
2334 4426 2.363680 CGAGGAGCTCATGGTGAGTATT 59.636 50.000 17.19 0.00 45.94 1.89
2335 4427 3.726607 GAGGAGCTCATGGTGAGTATTG 58.273 50.000 17.19 0.00 45.94 1.90
2336 4428 2.158842 AGGAGCTCATGGTGAGTATTGC 60.159 50.000 17.19 0.00 45.94 3.56
2337 4429 2.216898 GAGCTCATGGTGAGTATTGCC 58.783 52.381 9.40 0.00 45.94 4.52
2338 4430 1.842562 AGCTCATGGTGAGTATTGCCT 59.157 47.619 8.58 0.00 45.94 4.75
2339 4431 1.945394 GCTCATGGTGAGTATTGCCTG 59.055 52.381 8.58 0.00 45.94 4.85
2340 4432 1.945394 CTCATGGTGAGTATTGCCTGC 59.055 52.381 0.00 0.00 39.58 4.85
2341 4433 1.027357 CATGGTGAGTATTGCCTGCC 58.973 55.000 0.00 0.00 0.00 4.85
2342 4434 0.106519 ATGGTGAGTATTGCCTGCCC 60.107 55.000 0.00 0.00 0.00 5.36
2343 4435 1.819632 GGTGAGTATTGCCTGCCCG 60.820 63.158 0.00 0.00 0.00 6.13
2344 4436 2.124736 TGAGTATTGCCTGCCCGC 60.125 61.111 0.00 0.00 0.00 6.13
2345 4437 3.272334 GAGTATTGCCTGCCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
2346 4438 4.096003 AGTATTGCCTGCCCGCGT 62.096 61.111 4.92 0.00 0.00 6.01
2347 4439 2.202960 GTATTGCCTGCCCGCGTA 60.203 61.111 4.92 0.00 0.00 4.42
2348 4440 2.202960 TATTGCCTGCCCGCGTAC 60.203 61.111 4.92 0.00 0.00 3.67
2349 4441 3.743534 TATTGCCTGCCCGCGTACC 62.744 63.158 4.92 0.00 0.00 3.34
2352 4444 4.886121 GCCTGCCCGCGTACCTAC 62.886 72.222 4.92 0.00 0.00 3.18
2368 4460 2.959707 ACCTACGTCCTGGATGATCTTC 59.040 50.000 22.36 0.00 0.00 2.87
2384 4476 1.571215 CTTCACGTGCATGCAGAGCA 61.571 55.000 23.41 12.11 44.86 4.26
2408 4500 5.619625 AGCAGCTTCTAAATCTTTGTGAC 57.380 39.130 0.00 0.00 0.00 3.67
2421 4513 1.391157 TTGTGACTTGGCTTGGGTGC 61.391 55.000 0.00 0.00 0.00 5.01
2450 4542 3.181506 GGAGCATGAAACGATTCTGAACC 60.182 47.826 6.98 6.17 36.48 3.62
2479 4571 3.838271 GGCGGCGAGTCTGATGGA 61.838 66.667 12.98 0.00 0.00 3.41
2552 4644 6.245890 TCATAATCCATGACACACATACCA 57.754 37.500 0.00 0.00 38.79 3.25
2603 4695 3.582714 TGCTGCGATCGATAATCAGAT 57.417 42.857 21.57 0.00 33.65 2.90
2621 4713 3.666730 GCGCATGCATCACGTTTC 58.333 55.556 19.57 1.02 42.15 2.78
2747 4839 3.564511 CAAAACATTGTGTCCCGATGTC 58.435 45.455 0.00 0.00 45.70 3.06
2776 4870 7.787215 GATCTAAATCATGCATCCTGCGAAAAT 60.787 37.037 0.00 0.00 37.78 1.82
2785 4879 5.640732 GCATCCTGCGAAAATAAAAGAGAA 58.359 37.500 0.00 0.00 31.71 2.87
2786 4880 6.268566 GCATCCTGCGAAAATAAAAGAGAAT 58.731 36.000 0.00 0.00 31.71 2.40
2787 4881 7.417612 GCATCCTGCGAAAATAAAAGAGAATA 58.582 34.615 0.00 0.00 31.71 1.75
2788 4882 7.589221 GCATCCTGCGAAAATAAAAGAGAATAG 59.411 37.037 0.00 0.00 31.71 1.73
2789 4883 8.616076 CATCCTGCGAAAATAAAAGAGAATAGT 58.384 33.333 0.00 0.00 0.00 2.12
2790 4884 9.832445 ATCCTGCGAAAATAAAAGAGAATAGTA 57.168 29.630 0.00 0.00 0.00 1.82
2792 4886 8.336080 CCTGCGAAAATAAAAGAGAATAGTACC 58.664 37.037 0.00 0.00 0.00 3.34
2793 4887 9.099454 CTGCGAAAATAAAAGAGAATAGTACCT 57.901 33.333 0.00 0.00 0.00 3.08
2823 4917 7.039504 ACAGCACCTCTCAAATGACAATTATTT 60.040 33.333 0.00 0.00 0.00 1.40
2899 4993 3.406764 GGTGCACCTGAATCCAGATATC 58.593 50.000 29.12 0.00 43.02 1.63
2911 5005 2.171840 CCAGATATCTACCCTGACCCG 58.828 57.143 4.54 0.00 0.00 5.28
2944 5038 3.976015 TCCTTCAAGGTTCAAGGTTTGT 58.024 40.909 2.50 0.00 40.28 2.83
2945 5039 5.118729 TCCTTCAAGGTTCAAGGTTTGTA 57.881 39.130 2.50 0.00 40.28 2.41
2946 5040 4.885325 TCCTTCAAGGTTCAAGGTTTGTAC 59.115 41.667 2.50 0.00 40.28 2.90
2992 5089 1.425066 AGATCAAACAGCTCAACCCCA 59.575 47.619 0.00 0.00 0.00 4.96
2993 5090 2.042162 AGATCAAACAGCTCAACCCCAT 59.958 45.455 0.00 0.00 0.00 4.00
2994 5091 1.619654 TCAAACAGCTCAACCCCATG 58.380 50.000 0.00 0.00 0.00 3.66
2995 5092 0.037975 CAAACAGCTCAACCCCATGC 60.038 55.000 0.00 0.00 0.00 4.06
3003 5100 1.958579 CTCAACCCCATGCATGTATGG 59.041 52.381 30.06 30.06 45.83 2.74
3248 5347 4.306600 CACTTGGAGCCCAATTTTGTAAC 58.693 43.478 7.06 0.00 43.07 2.50
3633 5732 1.228644 ATGCTTTGCTGAGGTGGCA 60.229 52.632 0.00 0.00 37.97 4.92
3826 5925 8.755977 TCTAGAAACGAAGGGAGTACAAAATAT 58.244 33.333 0.00 0.00 0.00 1.28
3852 5951 2.694109 CCTAGTAAGTTTCTCCCCTCGG 59.306 54.545 0.00 0.00 0.00 4.63
3893 5992 8.608317 GTTGAAATCTATAAACTCTGAAGCTCC 58.392 37.037 0.00 0.00 0.00 4.70
3904 6003 7.721286 AACTCTGAAGCTCCATATTTTATCG 57.279 36.000 0.00 0.00 0.00 2.92
3953 6052 7.758495 TCTTCGTTTGCTAAAAGAAAGTTTCT 58.242 30.769 12.50 12.50 43.15 2.52
4092 6191 3.117322 TGATGGGGGAGAAAACTTGACAA 60.117 43.478 0.00 0.00 0.00 3.18
4093 6192 3.611025 TGGGGGAGAAAACTTGACAAT 57.389 42.857 0.00 0.00 0.00 2.71
4094 6193 4.733077 TGGGGGAGAAAACTTGACAATA 57.267 40.909 0.00 0.00 0.00 1.90
4095 6194 5.068215 TGGGGGAGAAAACTTGACAATAA 57.932 39.130 0.00 0.00 0.00 1.40
4153 6252 3.081061 AGCGATTCAATTAGCAACACCA 58.919 40.909 2.28 0.00 0.00 4.17
4184 6283 0.179000 ATCCCATGGAGAACACGAGC 59.821 55.000 15.22 0.00 34.05 5.03
4190 6289 2.095252 GGAGAACACGAGCGCCTTC 61.095 63.158 2.29 0.00 0.00 3.46
4205 6304 4.278419 AGCGCCTTCAAATATTTGGGATAC 59.722 41.667 24.40 12.81 38.66 2.24
4270 6369 1.092348 GCATCACGGACCCCTAAAAC 58.908 55.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 173 2.792749 CAGCAAAAAGGAAACGTCGTT 58.207 42.857 4.40 4.40 33.30 3.85
162 174 1.533129 GCAGCAAAAAGGAAACGTCGT 60.533 47.619 0.00 0.00 0.00 4.34
172 184 1.199624 GACACGGTTGCAGCAAAAAG 58.800 50.000 10.11 6.80 0.00 2.27
253 265 2.109126 GCCTCGCTGGTGATTGACC 61.109 63.158 0.00 0.00 46.37 4.02
578 596 4.515191 TCCTCACGAGTCATTTTTCCAAAG 59.485 41.667 0.00 0.00 0.00 2.77
579 597 4.456535 TCCTCACGAGTCATTTTTCCAAA 58.543 39.130 0.00 0.00 0.00 3.28
580 598 4.065088 CTCCTCACGAGTCATTTTTCCAA 58.935 43.478 0.00 0.00 33.51 3.53
581 599 3.557054 CCTCCTCACGAGTCATTTTTCCA 60.557 47.826 0.00 0.00 36.82 3.53
582 600 3.003480 CCTCCTCACGAGTCATTTTTCC 58.997 50.000 0.00 0.00 36.82 3.13
583 601 3.926616 TCCTCCTCACGAGTCATTTTTC 58.073 45.455 0.00 0.00 36.82 2.29
692 710 3.917760 GATGGGCGACGCTAGGCT 61.918 66.667 20.77 0.00 0.00 4.58
717 735 2.417097 GTTGGTGTGGCAACTGGC 59.583 61.111 0.00 0.00 43.74 4.85
718 736 2.498056 GGGTTGGTGTGGCAACTGG 61.498 63.158 0.00 0.00 37.61 4.00
719 737 2.498056 GGGGTTGGTGTGGCAACTG 61.498 63.158 0.00 0.00 37.61 3.16
720 738 2.123468 GGGGTTGGTGTGGCAACT 60.123 61.111 0.00 0.00 37.61 3.16
721 739 2.060980 TTGGGGTTGGTGTGGCAAC 61.061 57.895 0.00 0.00 0.00 4.17
726 744 1.153046 ACTCGTTGGGGTTGGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
763 781 3.832615 AACGTAAAGGTTGTGAGGACT 57.167 42.857 0.00 0.00 0.00 3.85
764 782 4.205323 CAAACGTAAAGGTTGTGAGGAC 57.795 45.455 0.00 0.00 42.44 3.85
787 2561 0.539438 GTGGTTTGGGTGAGCCATCA 60.539 55.000 3.35 0.79 36.17 3.07
820 2594 1.202371 CCGTATGTAAAGAGCAGCGGA 60.202 52.381 0.00 0.00 39.17 5.54
822 2596 2.203800 TCCGTATGTAAAGAGCAGCG 57.796 50.000 0.00 0.00 0.00 5.18
888 2670 3.373565 CGAAAGCCAGCCAACCCC 61.374 66.667 0.00 0.00 0.00 4.95
889 2671 1.657751 GATCGAAAGCCAGCCAACCC 61.658 60.000 0.00 0.00 0.00 4.11
890 2672 1.803289 GATCGAAAGCCAGCCAACC 59.197 57.895 0.00 0.00 0.00 3.77
926 2708 2.586792 GCCAAGGCGTCCATCTCT 59.413 61.111 0.00 0.00 0.00 3.10
939 2721 2.835317 ATACAGTGCATGGCCGCCAA 62.835 55.000 18.00 0.00 36.95 4.52
940 2722 2.835317 AATACAGTGCATGGCCGCCA 62.835 55.000 16.17 16.17 38.19 5.69
941 2723 1.666209 AAATACAGTGCATGGCCGCC 61.666 55.000 1.04 1.04 0.00 6.13
942 2724 1.002468 CTAAATACAGTGCATGGCCGC 60.002 52.381 0.00 0.00 0.00 6.53
943 2725 2.288666 ACTAAATACAGTGCATGGCCG 58.711 47.619 0.00 0.00 0.00 6.13
944 2726 3.242739 CGAACTAAATACAGTGCATGGCC 60.243 47.826 0.00 0.00 0.00 5.36
945 2727 3.374058 ACGAACTAAATACAGTGCATGGC 59.626 43.478 0.00 0.00 0.00 4.40
946 2728 4.259810 CGACGAACTAAATACAGTGCATGG 60.260 45.833 0.00 0.00 0.00 3.66
947 2729 4.326278 ACGACGAACTAAATACAGTGCATG 59.674 41.667 0.00 0.00 0.00 4.06
948 2730 4.491676 ACGACGAACTAAATACAGTGCAT 58.508 39.130 0.00 0.00 0.00 3.96
949 2731 3.904571 ACGACGAACTAAATACAGTGCA 58.095 40.909 0.00 0.00 0.00 4.57
950 2732 4.898328 AACGACGAACTAAATACAGTGC 57.102 40.909 0.00 0.00 0.00 4.40
951 2733 7.215844 GTGTAAACGACGAACTAAATACAGTG 58.784 38.462 0.00 0.00 0.00 3.66
952 2734 6.086765 CGTGTAAACGACGAACTAAATACAGT 59.913 38.462 0.00 0.00 39.21 3.55
953 2735 6.444566 CGTGTAAACGACGAACTAAATACAG 58.555 40.000 0.00 0.00 39.21 2.74
960 2742 1.317332 CGCGTGTAAACGACGAACTA 58.683 50.000 10.31 0.00 39.21 2.24
972 2754 4.876606 GTTGAAAACGCGCGTGTA 57.123 50.000 38.44 19.80 36.92 2.90
985 2767 4.287552 GGTTCCATCTCTACCTAGGTTGA 58.712 47.826 22.11 22.28 0.00 3.18
994 2776 0.179081 GCCACGGGTTCCATCTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
1054 2848 3.490759 CCGGTGCACGCTTAGCAG 61.491 66.667 11.45 0.00 43.63 4.24
1055 2849 4.308458 ACCGGTGCACGCTTAGCA 62.308 61.111 6.12 0.00 42.52 3.49
1056 2850 3.788766 CACCGGTGCACGCTTAGC 61.789 66.667 24.02 0.00 42.52 3.09
1057 2851 3.118454 CCACCGGTGCACGCTTAG 61.118 66.667 29.75 9.01 42.52 2.18
1058 2852 3.583276 CTCCACCGGTGCACGCTTA 62.583 63.158 29.75 6.54 42.52 3.09
1059 2853 4.988598 CTCCACCGGTGCACGCTT 62.989 66.667 29.75 0.00 42.52 4.68
1158 2952 1.586564 GATGTCGAAGGAGGCGTCG 60.587 63.158 0.00 0.00 38.62 5.12
1170 2964 0.598680 GGATGAAGCGAGGGATGTCG 60.599 60.000 0.00 0.00 43.08 4.35
1251 3045 3.088532 TGACAAACTGGCCCATGTAATC 58.911 45.455 0.00 0.00 0.00 1.75
1269 3063 4.150897 TGGTCACCAAAGCCTATATGAC 57.849 45.455 0.00 0.00 36.55 3.06
1275 3069 2.890311 CACAAATGGTCACCAAAGCCTA 59.110 45.455 0.00 0.00 36.95 3.93
1288 3082 7.042725 CCTTATACACATCTCGTACACAAATGG 60.043 40.741 0.00 0.00 0.00 3.16
1290 3084 7.553334 ACCTTATACACATCTCGTACACAAAT 58.447 34.615 0.00 0.00 0.00 2.32
1298 3092 3.004106 GCCGTACCTTATACACATCTCGT 59.996 47.826 0.00 0.00 0.00 4.18
1305 3099 1.032014 TCGGGCCGTACCTTATACAC 58.968 55.000 27.32 0.00 39.10 2.90
1307 3101 2.165998 AGATCGGGCCGTACCTTATAC 58.834 52.381 27.32 7.70 39.10 1.47
1309 3103 1.617357 GAAGATCGGGCCGTACCTTAT 59.383 52.381 27.32 10.91 39.10 1.73
1310 3104 1.035139 GAAGATCGGGCCGTACCTTA 58.965 55.000 27.32 5.33 39.10 2.69
1311 3105 0.974010 TGAAGATCGGGCCGTACCTT 60.974 55.000 27.32 24.30 39.10 3.50
1479 3273 3.827876 TGAGGTACTTGAACATGGTACGA 59.172 43.478 0.00 0.00 41.55 3.43
1480 3274 4.182693 TGAGGTACTTGAACATGGTACG 57.817 45.455 0.00 0.00 41.55 3.67
1482 3276 6.228258 GTTCTTGAGGTACTTGAACATGGTA 58.772 40.000 0.00 0.00 41.55 3.25
1507 3301 0.389948 CCGAAGTACCTGAGCACCAC 60.390 60.000 0.00 0.00 0.00 4.16
1659 3453 7.044798 GGGAGTACTAGTCTAGAACGTTAGAA 58.955 42.308 14.02 0.00 31.80 2.10
1664 3458 4.141733 GGAGGGAGTACTAGTCTAGAACGT 60.142 50.000 14.02 0.00 0.00 3.99
1665 3459 4.379652 GGAGGGAGTACTAGTCTAGAACG 58.620 52.174 14.02 0.00 0.00 3.95
1666 3460 4.141733 ACGGAGGGAGTACTAGTCTAGAAC 60.142 50.000 14.02 0.00 0.00 3.01
1667 3461 4.036518 ACGGAGGGAGTACTAGTCTAGAA 58.963 47.826 14.02 0.00 0.00 2.10
1668 3462 3.652055 ACGGAGGGAGTACTAGTCTAGA 58.348 50.000 14.02 0.00 0.00 2.43
1669 3463 4.379652 GAACGGAGGGAGTACTAGTCTAG 58.620 52.174 0.00 5.27 0.00 2.43
1670 3464 3.181471 CGAACGGAGGGAGTACTAGTCTA 60.181 52.174 0.00 0.00 0.00 2.59
1671 3465 2.419851 CGAACGGAGGGAGTACTAGTCT 60.420 54.545 0.00 0.00 0.00 3.24
1672 3466 1.939255 CGAACGGAGGGAGTACTAGTC 59.061 57.143 0.00 0.00 0.00 2.59
1673 3467 1.407989 CCGAACGGAGGGAGTACTAGT 60.408 57.143 7.53 0.00 37.50 2.57
1674 3468 1.134280 TCCGAACGGAGGGAGTACTAG 60.134 57.143 12.04 0.00 39.76 2.57
1675 3469 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
1676 3470 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
1677 3471 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1678 3472 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1679 3473 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1680 3474 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1681 3475 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1682 3476 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1683 3477 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1684 3478 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1685 3479 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
1686 3480 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
1687 3481 3.612860 CCTGAGACAAGTAATTCCGAACG 59.387 47.826 0.00 0.00 0.00 3.95
1688 3482 4.817517 TCCTGAGACAAGTAATTCCGAAC 58.182 43.478 0.00 0.00 0.00 3.95
1689 3483 5.046591 ACATCCTGAGACAAGTAATTCCGAA 60.047 40.000 0.00 0.00 0.00 4.30
1690 3484 4.466370 ACATCCTGAGACAAGTAATTCCGA 59.534 41.667 0.00 0.00 0.00 4.55
1691 3485 4.759782 ACATCCTGAGACAAGTAATTCCG 58.240 43.478 0.00 0.00 0.00 4.30
1692 3486 7.275920 ACATACATCCTGAGACAAGTAATTCC 58.724 38.462 0.00 0.00 0.00 3.01
1693 3487 9.469807 CTACATACATCCTGAGACAAGTAATTC 57.530 37.037 0.00 0.00 0.00 2.17
1694 3488 9.201989 TCTACATACATCCTGAGACAAGTAATT 57.798 33.333 0.00 0.00 0.00 1.40
1695 3489 8.768501 TCTACATACATCCTGAGACAAGTAAT 57.231 34.615 0.00 0.00 0.00 1.89
1696 3490 8.467598 GTTCTACATACATCCTGAGACAAGTAA 58.532 37.037 0.00 0.00 0.00 2.24
1697 3491 7.834681 AGTTCTACATACATCCTGAGACAAGTA 59.165 37.037 0.00 0.00 0.00 2.24
1698 3492 6.665680 AGTTCTACATACATCCTGAGACAAGT 59.334 38.462 0.00 0.00 0.00 3.16
1699 3493 7.106439 AGTTCTACATACATCCTGAGACAAG 57.894 40.000 0.00 0.00 0.00 3.16
1700 3494 8.589701 TTAGTTCTACATACATCCTGAGACAA 57.410 34.615 0.00 0.00 0.00 3.18
1701 3495 8.589701 TTTAGTTCTACATACATCCTGAGACA 57.410 34.615 0.00 0.00 0.00 3.41
1705 3499 9.961265 CGTATTTTAGTTCTACATACATCCTGA 57.039 33.333 0.00 0.00 0.00 3.86
1706 3500 9.745880 ACGTATTTTAGTTCTACATACATCCTG 57.254 33.333 0.00 0.00 0.00 3.86
1707 3501 9.962783 GACGTATTTTAGTTCTACATACATCCT 57.037 33.333 0.00 0.00 0.00 3.24
1708 3502 9.962783 AGACGTATTTTAGTTCTACATACATCC 57.037 33.333 0.00 0.00 0.00 3.51
1724 3518 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
1725 3519 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
1726 3520 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
1727 3521 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
1728 3522 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
1729 3523 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
1730 3524 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
1731 3525 3.921021 CGCGGAAATGGATGTATCTAGAC 59.079 47.826 0.00 0.00 0.00 2.59
1732 3526 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
1733 3527 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
1734 3528 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
1735 3529 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
1736 3530 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
1737 3531 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
1738 3532 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
1739 3533 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
1740 3534 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
1741 3535 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
1742 3536 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
1743 3537 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
1744 3538 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
1745 3539 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
1746 3540 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
1747 3541 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
1748 3542 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
1749 3543 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
1750 3544 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
1751 3545 1.987770 TCGTTCGGAATTACTTGTCGC 59.012 47.619 0.00 0.00 0.00 5.19
1752 3546 3.060363 CCTTCGTTCGGAATTACTTGTCG 59.940 47.826 0.00 0.00 33.26 4.35
1753 3547 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
1754 3548 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
1755 3549 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
1756 3550 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
1757 3551 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
1758 3552 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
1759 3553 5.603170 AATACTCCCTTCGTTCGGAATTA 57.397 39.130 0.00 0.00 33.26 1.40
1760 3554 4.482952 AATACTCCCTTCGTTCGGAATT 57.517 40.909 0.00 0.00 33.26 2.17
1761 3555 5.803237 ATAATACTCCCTTCGTTCGGAAT 57.197 39.130 0.00 0.00 33.26 3.01
1762 3556 5.593909 TGTATAATACTCCCTTCGTTCGGAA 59.406 40.000 0.00 0.00 0.00 4.30
1763 3557 5.132502 TGTATAATACTCCCTTCGTTCGGA 58.867 41.667 0.00 0.00 0.00 4.55
1764 3558 5.443185 TGTATAATACTCCCTTCGTTCGG 57.557 43.478 0.00 0.00 0.00 4.30
1765 3559 5.862323 CCATGTATAATACTCCCTTCGTTCG 59.138 44.000 0.00 0.00 0.00 3.95
1766 3560 6.756221 ACCATGTATAATACTCCCTTCGTTC 58.244 40.000 0.00 0.00 0.00 3.95
1767 3561 6.742559 ACCATGTATAATACTCCCTTCGTT 57.257 37.500 0.00 0.00 0.00 3.85
1768 3562 8.431910 AATACCATGTATAATACTCCCTTCGT 57.568 34.615 0.00 0.00 0.00 3.85
1769 3563 8.528643 TGAATACCATGTATAATACTCCCTTCG 58.471 37.037 0.00 0.00 0.00 3.79
1770 3564 9.877178 CTGAATACCATGTATAATACTCCCTTC 57.123 37.037 0.00 0.00 0.00 3.46
1771 3565 8.826765 CCTGAATACCATGTATAATACTCCCTT 58.173 37.037 0.00 0.00 0.00 3.95
1772 3566 7.962003 ACCTGAATACCATGTATAATACTCCCT 59.038 37.037 0.00 0.00 0.00 4.20
1773 3567 8.147244 ACCTGAATACCATGTATAATACTCCC 57.853 38.462 0.00 0.00 0.00 4.30
1774 3568 9.436957 CAACCTGAATACCATGTATAATACTCC 57.563 37.037 0.00 0.00 0.00 3.85
1777 3571 9.555727 ACACAACCTGAATACCATGTATAATAC 57.444 33.333 0.00 0.00 0.00 1.89
1783 3577 4.457603 GCAACACAACCTGAATACCATGTA 59.542 41.667 0.00 0.00 0.00 2.29
1813 3614 3.120321 TCTGCACTCAAATTACACCGT 57.880 42.857 0.00 0.00 0.00 4.83
1816 3617 4.216257 ACACCATCTGCACTCAAATTACAC 59.784 41.667 0.00 0.00 0.00 2.90
1817 3618 4.397420 ACACCATCTGCACTCAAATTACA 58.603 39.130 0.00 0.00 0.00 2.41
1818 3619 5.376854 AACACCATCTGCACTCAAATTAC 57.623 39.130 0.00 0.00 0.00 1.89
1819 3620 5.534278 TCAAACACCATCTGCACTCAAATTA 59.466 36.000 0.00 0.00 0.00 1.40
1820 3621 4.341806 TCAAACACCATCTGCACTCAAATT 59.658 37.500 0.00 0.00 0.00 1.82
1821 3622 3.890756 TCAAACACCATCTGCACTCAAAT 59.109 39.130 0.00 0.00 0.00 2.32
1827 3629 3.715628 AAGTTCAAACACCATCTGCAC 57.284 42.857 0.00 0.00 0.00 4.57
1983 3785 0.866061 CAGGCCGACTTCGTGATACG 60.866 60.000 0.00 0.00 44.19 3.06
1984 3786 0.172803 ACAGGCCGACTTCGTGATAC 59.827 55.000 0.00 0.00 37.74 2.24
1985 3787 0.892755 AACAGGCCGACTTCGTGATA 59.107 50.000 0.00 0.00 37.74 2.15
1987 3789 1.006571 GAACAGGCCGACTTCGTGA 60.007 57.895 0.00 0.00 37.74 4.35
1999 3801 1.141019 GCATGCATGGCTGAACAGG 59.859 57.895 27.34 0.00 0.00 4.00
2019 3839 7.040755 TGACTCGGAACAAATTAATGAACATGT 60.041 33.333 0.00 0.00 0.00 3.21
2020 3840 7.271223 GTGACTCGGAACAAATTAATGAACATG 59.729 37.037 0.00 0.00 0.00 3.21
2022 3842 6.485313 AGTGACTCGGAACAAATTAATGAACA 59.515 34.615 0.00 0.00 0.00 3.18
2024 3844 7.504924 AAGTGACTCGGAACAAATTAATGAA 57.495 32.000 0.00 0.00 0.00 2.57
2031 3851 3.815401 CCTGAAAGTGACTCGGAACAAAT 59.185 43.478 0.00 0.00 0.00 2.32
2032 3852 3.202906 CCTGAAAGTGACTCGGAACAAA 58.797 45.455 0.00 0.00 0.00 2.83
2033 3853 2.484770 CCCTGAAAGTGACTCGGAACAA 60.485 50.000 0.00 0.00 0.00 2.83
2034 3854 1.070134 CCCTGAAAGTGACTCGGAACA 59.930 52.381 0.00 0.00 0.00 3.18
2035 3855 1.343465 TCCCTGAAAGTGACTCGGAAC 59.657 52.381 0.00 0.00 0.00 3.62
2037 3857 0.966920 GTCCCTGAAAGTGACTCGGA 59.033 55.000 0.00 0.00 0.00 4.55
2038 3858 0.388649 CGTCCCTGAAAGTGACTCGG 60.389 60.000 0.00 0.00 0.00 4.63
2039 3859 0.388649 CCGTCCCTGAAAGTGACTCG 60.389 60.000 0.00 0.00 0.00 4.18
2040 3860 0.966920 TCCGTCCCTGAAAGTGACTC 59.033 55.000 0.00 0.00 0.00 3.36
2042 3862 1.275291 TCATCCGTCCCTGAAAGTGAC 59.725 52.381 0.00 0.00 0.00 3.67
2044 3864 1.276421 ACTCATCCGTCCCTGAAAGTG 59.724 52.381 0.00 0.00 0.00 3.16
2066 4158 2.882876 GCTGCAGCACCTCCATTG 59.117 61.111 33.36 0.00 41.59 2.82
2088 4180 1.142060 GATCTCGTCCTCTCCTCCAGA 59.858 57.143 0.00 0.00 0.00 3.86
2196 4288 2.514824 GCCATTCCCTCCGTCAGC 60.515 66.667 0.00 0.00 0.00 4.26
2324 4416 1.302949 GGGCAGGCAATACTCACCA 59.697 57.895 0.00 0.00 0.00 4.17
2335 4427 4.886121 GTAGGTACGCGGGCAGGC 62.886 72.222 12.47 0.00 0.00 4.85
2336 4428 4.564116 CGTAGGTACGCGGGCAGG 62.564 72.222 12.47 0.00 43.14 4.85
2345 4437 3.488363 AGATCATCCAGGACGTAGGTAC 58.512 50.000 0.00 0.00 0.00 3.34
2346 4438 3.878237 AGATCATCCAGGACGTAGGTA 57.122 47.619 0.00 0.00 0.00 3.08
2347 4439 2.757894 AGATCATCCAGGACGTAGGT 57.242 50.000 0.00 0.00 0.00 3.08
2348 4440 2.959030 TGAAGATCATCCAGGACGTAGG 59.041 50.000 0.00 0.00 0.00 3.18
2349 4441 3.549019 CGTGAAGATCATCCAGGACGTAG 60.549 52.174 0.00 0.00 0.00 3.51
2350 4442 2.357952 CGTGAAGATCATCCAGGACGTA 59.642 50.000 0.00 0.00 0.00 3.57
2351 4443 1.135139 CGTGAAGATCATCCAGGACGT 59.865 52.381 0.00 0.00 0.00 4.34
2352 4444 1.135139 ACGTGAAGATCATCCAGGACG 59.865 52.381 6.91 6.91 0.00 4.79
2353 4445 2.544685 CACGTGAAGATCATCCAGGAC 58.455 52.381 10.90 0.00 0.00 3.85
2354 4446 1.134699 GCACGTGAAGATCATCCAGGA 60.135 52.381 22.23 0.00 0.00 3.86
2359 4451 1.667212 TGCATGCACGTGAAGATCATC 59.333 47.619 22.23 7.48 0.00 2.92
2384 4476 7.108847 AGTCACAAAGATTTAGAAGCTGCTAT 58.891 34.615 1.07 0.00 0.00 2.97
2385 4477 6.467677 AGTCACAAAGATTTAGAAGCTGCTA 58.532 36.000 0.90 0.00 0.00 3.49
2408 4500 0.323725 ACCTATGCACCCAAGCCAAG 60.324 55.000 0.00 0.00 0.00 3.61
2421 4513 2.905075 TCGTTTCATGCTCCACCTATG 58.095 47.619 0.00 0.00 0.00 2.23
2479 4571 6.493802 TGTACTCTTTCCATGTAACTCTGTCT 59.506 38.462 0.00 0.00 0.00 3.41
2621 4713 2.259618 CCGTCTCGTTTATCACCTGTG 58.740 52.381 0.00 0.00 0.00 3.66
2776 4870 9.690913 TGCTGTACTAGGTACTATTCTCTTTTA 57.309 33.333 8.89 0.00 41.70 1.52
2785 4879 5.132312 TGAGAGGTGCTGTACTAGGTACTAT 59.868 44.000 8.89 0.00 41.70 2.12
2786 4880 4.472470 TGAGAGGTGCTGTACTAGGTACTA 59.528 45.833 8.89 0.00 41.75 1.82
2787 4881 3.266254 TGAGAGGTGCTGTACTAGGTACT 59.734 47.826 8.89 0.00 46.37 2.73
2788 4882 3.618351 TGAGAGGTGCTGTACTAGGTAC 58.382 50.000 0.00 1.37 39.24 3.34
2789 4883 4.311520 TTGAGAGGTGCTGTACTAGGTA 57.688 45.455 0.00 0.00 0.00 3.08
2790 4884 2.901338 TGAGAGGTGCTGTACTAGGT 57.099 50.000 0.00 0.00 0.00 3.08
2792 4886 5.105752 GTCATTTGAGAGGTGCTGTACTAG 58.894 45.833 0.00 0.00 0.00 2.57
2793 4887 4.526650 TGTCATTTGAGAGGTGCTGTACTA 59.473 41.667 0.00 0.00 0.00 1.82
2794 4888 3.324846 TGTCATTTGAGAGGTGCTGTACT 59.675 43.478 0.00 0.00 0.00 2.73
2795 4889 3.664107 TGTCATTTGAGAGGTGCTGTAC 58.336 45.455 0.00 0.00 0.00 2.90
2796 4890 4.350368 TTGTCATTTGAGAGGTGCTGTA 57.650 40.909 0.00 0.00 0.00 2.74
2797 4891 2.936919 TGTCATTTGAGAGGTGCTGT 57.063 45.000 0.00 0.00 0.00 4.40
2798 4892 4.778534 AATTGTCATTTGAGAGGTGCTG 57.221 40.909 0.00 0.00 0.00 4.41
2799 4893 7.318141 CAAATAATTGTCATTTGAGAGGTGCT 58.682 34.615 6.37 0.00 43.14 4.40
2800 4894 6.532657 CCAAATAATTGTCATTTGAGAGGTGC 59.467 38.462 11.93 0.00 43.14 5.01
2801 4895 6.532657 GCCAAATAATTGTCATTTGAGAGGTG 59.467 38.462 11.93 0.00 43.14 4.00
2823 4917 2.627945 GAATTGTGTATCCTGTCGCCA 58.372 47.619 0.00 0.00 0.00 5.69
2899 4993 2.722201 GGTGAGCGGGTCAGGGTAG 61.722 68.421 10.61 0.00 35.13 3.18
2944 5038 1.004277 GTTGGGCATTGAGGTCCAGTA 59.996 52.381 0.00 0.00 44.71 2.74
2945 5039 0.251341 GTTGGGCATTGAGGTCCAGT 60.251 55.000 0.00 0.00 44.71 4.00
2946 5040 0.038744 AGTTGGGCATTGAGGTCCAG 59.961 55.000 0.00 0.00 44.71 3.86
2992 5089 6.425210 AGTGTACTATGTCCATACATGCAT 57.575 37.500 0.00 0.00 45.99 3.96
2993 5090 5.869649 AGTGTACTATGTCCATACATGCA 57.130 39.130 0.00 0.00 45.99 3.96
2994 5091 8.833231 ATAAAGTGTACTATGTCCATACATGC 57.167 34.615 0.00 0.00 45.99 4.06
3003 5100 9.733219 GTTGTCCTAGATAAAGTGTACTATGTC 57.267 37.037 0.00 0.00 0.00 3.06
3248 5347 7.337689 TGACAAAGAAATGGAGGATATGAACAG 59.662 37.037 0.00 0.00 0.00 3.16
3596 5695 8.355169 CAAAGCATGCATATAGGTCATAAGTTT 58.645 33.333 21.98 2.50 0.00 2.66
3826 5925 1.206371 GGAGAAACTTACTAGGCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
3885 5984 6.353323 TGGTTCGATAAAATATGGAGCTTCA 58.647 36.000 0.00 0.00 0.00 3.02
3904 6003 7.339466 AGAAAGGGTACAAATGTATCATGGTTC 59.661 37.037 6.20 1.60 33.39 3.62
4022 6121 5.907197 ATGAGTTTTGCGATAATAGGTCG 57.093 39.130 0.00 0.00 41.77 4.79
4134 6233 4.944962 TCTGGTGTTGCTAATTGAATCG 57.055 40.909 0.00 0.00 0.00 3.34
4153 6252 1.285962 CCATGGGATGGGAGTGTTTCT 59.714 52.381 2.85 0.00 46.86 2.52
4184 6283 4.827284 AGGTATCCCAAATATTTGAAGGCG 59.173 41.667 26.32 11.15 40.55 5.52
4205 6304 1.682451 TTACGCGGATGGGGAAGAGG 61.682 60.000 12.47 0.00 0.00 3.69
4366 6465 3.916172 CAGGTTTGCATGAAATTCGTCTG 59.084 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.