Multiple sequence alignment - TraesCS2D01G397500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G397500 chr2D 100.000 2769 0 0 903 3671 509229163 509231931 0.000000e+00 5114.0
1 TraesCS2D01G397500 chr2D 100.000 383 0 0 1 383 509228261 509228643 0.000000e+00 708.0
2 TraesCS2D01G397500 chr2B 95.546 2380 57 14 903 3263 598560599 598562948 0.000000e+00 3762.0
3 TraesCS2D01G397500 chr2B 90.000 390 21 9 1 383 598559880 598560258 4.260000e-134 488.0
4 TraesCS2D01G397500 chr2B 89.433 388 40 1 3285 3671 623546064 623546451 4.260000e-134 488.0
5 TraesCS2D01G397500 chr2A 96.027 2039 46 8 903 2916 652999988 653002016 0.000000e+00 3284.0
6 TraesCS2D01G397500 chr2A 92.969 384 17 2 3285 3668 712419330 712419703 5.360000e-153 551.0
7 TraesCS2D01G397500 chr2A 90.146 274 13 9 1 265 652998923 652999191 9.760000e-91 344.0
8 TraesCS2D01G397500 chr2A 93.785 177 3 2 2918 3090 653002068 653002240 3.640000e-65 259.0
9 TraesCS2D01G397500 chr2A 85.271 129 10 4 263 383 652999504 652999631 1.380000e-24 124.0
10 TraesCS2D01G397500 chr6A 84.240 1453 229 0 1116 2568 476000065 476001517 0.000000e+00 1415.0
11 TraesCS2D01G397500 chr6B 83.838 1454 233 2 1116 2568 484101010 484099558 0.000000e+00 1382.0
12 TraesCS2D01G397500 chr6D 83.758 1453 236 0 1116 2568 336366395 336367847 0.000000e+00 1376.0
13 TraesCS2D01G397500 chr1A 76.132 1303 259 41 1263 2533 339915537 339914255 1.440000e-178 636.0
14 TraesCS2D01G397500 chr1D 76.074 1304 260 42 1263 2534 260588604 260589887 1.860000e-177 632.0
15 TraesCS2D01G397500 chr5D 91.538 390 33 0 3282 3671 500872053 500872442 4.170000e-149 538.0
16 TraesCS2D01G397500 chr5D 75.794 504 110 12 1937 2434 412077656 412078153 1.020000e-60 244.0
17 TraesCS2D01G397500 chr7A 91.237 388 34 0 3284 3671 591616960 591617347 2.510000e-146 529.0
18 TraesCS2D01G397500 chr7A 87.404 389 46 3 3284 3671 510622519 510622133 9.350000e-121 444.0
19 TraesCS2D01G397500 chr5B 90.698 387 36 0 3285 3671 648146889 648147275 1.950000e-142 516.0
20 TraesCS2D01G397500 chr5B 76.031 509 100 20 1937 2434 495020569 495021066 1.020000e-60 244.0
21 TraesCS2D01G397500 chr5B 80.864 162 29 2 2274 2434 684230631 684230791 3.850000e-25 126.0
22 TraesCS2D01G397500 chr5B 80.392 102 18 2 1910 2010 684228701 684228801 3.930000e-10 76.8
23 TraesCS2D01G397500 chr1B 89.922 387 39 0 3285 3671 476913706 476914092 1.970000e-137 499.0
24 TraesCS2D01G397500 chr4A 89.119 386 40 2 3284 3668 594186928 594187312 2.560000e-131 479.0
25 TraesCS2D01G397500 chr7D 87.887 388 44 3 3285 3671 161190989 161191374 1.550000e-123 453.0
26 TraesCS2D01G397500 chr5A 76.621 509 97 20 1937 2434 523816357 523816854 1.010000e-65 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G397500 chr2D 509228261 509231931 3670 False 2911.00 5114 100.00000 1 3671 2 chr2D.!!$F1 3670
1 TraesCS2D01G397500 chr2B 598559880 598562948 3068 False 2125.00 3762 92.77300 1 3263 2 chr2B.!!$F2 3262
2 TraesCS2D01G397500 chr2A 652998923 653002240 3317 False 1002.75 3284 91.30725 1 3090 4 chr2A.!!$F2 3089
3 TraesCS2D01G397500 chr6A 476000065 476001517 1452 False 1415.00 1415 84.24000 1116 2568 1 chr6A.!!$F1 1452
4 TraesCS2D01G397500 chr6B 484099558 484101010 1452 True 1382.00 1382 83.83800 1116 2568 1 chr6B.!!$R1 1452
5 TraesCS2D01G397500 chr6D 336366395 336367847 1452 False 1376.00 1376 83.75800 1116 2568 1 chr6D.!!$F1 1452
6 TraesCS2D01G397500 chr1A 339914255 339915537 1282 True 636.00 636 76.13200 1263 2533 1 chr1A.!!$R1 1270
7 TraesCS2D01G397500 chr1D 260588604 260589887 1283 False 632.00 632 76.07400 1263 2534 1 chr1D.!!$F1 1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 48 1.818674 ACCAAAATCTCGTCCAATGCC 59.181 47.619 0.00 0.00 0.00 4.40 F
73 77 2.306341 ATGCACAGCTAGCACTACTG 57.694 50.000 18.83 8.49 45.95 2.74 F
1746 2092 1.595311 TCCACCTGCCCATCAACTAT 58.405 50.000 0.00 0.00 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1972 1.895886 ATGCCTGGAGGAGGAGGTCT 61.896 60.000 0.00 0.0 46.33 3.85 R
2232 2590 2.741985 TCGGCCGTGAACATGCTG 60.742 61.111 27.15 0.0 0.00 4.41 R
3594 4024 0.032815 GAGAGGCTTGCGGTAGGATC 59.967 60.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.181449 TGGAGAACCAAAATCTCGTCCAA 60.181 43.478 0.00 0.00 43.43 3.53
44 48 1.818674 ACCAAAATCTCGTCCAATGCC 59.181 47.619 0.00 0.00 0.00 4.40
60 64 4.338964 CCAATGCCTACATTCTAATGCACA 59.661 41.667 2.60 0.00 44.83 4.57
63 67 3.209410 GCCTACATTCTAATGCACAGCT 58.791 45.455 2.60 0.00 40.04 4.24
64 68 4.141733 TGCCTACATTCTAATGCACAGCTA 60.142 41.667 2.60 0.00 40.04 3.32
65 69 4.450419 GCCTACATTCTAATGCACAGCTAG 59.550 45.833 2.60 0.00 40.04 3.42
66 70 4.450419 CCTACATTCTAATGCACAGCTAGC 59.550 45.833 6.62 6.62 40.04 3.42
73 77 2.306341 ATGCACAGCTAGCACTACTG 57.694 50.000 18.83 8.49 45.95 2.74
82 86 4.719997 GCACTACTGCTCTAGCCG 57.280 61.111 0.00 0.00 40.63 5.52
133 138 7.373617 TGCCATGTTTTCTAGTATCTGGATA 57.626 36.000 0.00 0.00 0.00 2.59
172 181 4.737054 ACAAAATGCATCCGATCAAGAAC 58.263 39.130 0.00 0.00 0.00 3.01
341 674 9.394477 GTTACTGAGTTAGTTAAGGCAAAATTG 57.606 33.333 0.00 0.00 40.89 2.32
344 677 8.824079 ACTGAGTTAGTTAAGGCAAAATTGGCA 61.824 37.037 20.00 0.00 46.06 4.92
996 1342 2.815647 GGCGCTCCTCTGTTTCCG 60.816 66.667 7.64 0.00 0.00 4.30
1626 1972 2.042259 CATTCTTGCCTCGCTGCCA 61.042 57.895 0.00 0.00 0.00 4.92
1746 2092 1.595311 TCCACCTGCCCATCAACTAT 58.405 50.000 0.00 0.00 0.00 2.12
2633 2991 3.330853 GCGGCTGCTTATCGACGG 61.331 66.667 11.21 0.00 38.39 4.79
2634 2992 2.411701 CGGCTGCTTATCGACGGA 59.588 61.111 0.00 0.00 0.00 4.69
2635 2993 1.658717 CGGCTGCTTATCGACGGAG 60.659 63.158 0.00 0.00 0.00 4.63
2681 3039 1.479323 TCGGTGTTGATAGCTACCACC 59.521 52.381 17.53 17.53 32.75 4.61
2682 3040 1.206132 CGGTGTTGATAGCTACCACCA 59.794 52.381 23.04 7.70 32.75 4.17
2683 3041 2.629051 GGTGTTGATAGCTACCACCAC 58.371 52.381 20.52 15.44 33.42 4.16
2684 3042 2.027561 GGTGTTGATAGCTACCACCACA 60.028 50.000 16.81 3.39 33.42 4.17
2762 3129 4.427956 ACCATTTTTATTTCCTCCCCCA 57.572 40.909 0.00 0.00 0.00 4.96
2763 3130 4.361783 ACCATTTTTATTTCCTCCCCCAG 58.638 43.478 0.00 0.00 0.00 4.45
2871 3238 7.795047 TGCTGATTGTTATTAGAGAAGATGGA 58.205 34.615 0.00 0.00 0.00 3.41
2872 3239 7.930325 TGCTGATTGTTATTAGAGAAGATGGAG 59.070 37.037 0.00 0.00 0.00 3.86
2873 3240 8.147058 GCTGATTGTTATTAGAGAAGATGGAGA 58.853 37.037 0.00 0.00 0.00 3.71
2979 3404 3.127533 CCCTTTCGCTTGCTCCGG 61.128 66.667 0.00 0.00 0.00 5.14
2980 3405 3.804193 CCTTTCGCTTGCTCCGGC 61.804 66.667 0.00 0.00 39.26 6.13
2981 3406 3.804193 CTTTCGCTTGCTCCGGCC 61.804 66.667 0.00 0.00 37.74 6.13
3093 3522 0.741221 CGTGGCTTCCTTGGCTAGAC 60.741 60.000 0.00 0.00 0.00 2.59
3190 3619 1.683011 CCGCCCAGAAATGAATCCAGT 60.683 52.381 0.00 0.00 0.00 4.00
3216 3645 8.676454 TTATATACCACGTGATTTGTTTTTGC 57.324 30.769 19.30 0.00 0.00 3.68
3217 3646 3.518634 ACCACGTGATTTGTTTTTGCT 57.481 38.095 19.30 0.00 0.00 3.91
3218 3647 4.640789 ACCACGTGATTTGTTTTTGCTA 57.359 36.364 19.30 0.00 0.00 3.49
3219 3648 4.606961 ACCACGTGATTTGTTTTTGCTAG 58.393 39.130 19.30 0.00 0.00 3.42
3222 3651 5.173131 CCACGTGATTTGTTTTTGCTAGAAC 59.827 40.000 19.30 0.00 0.00 3.01
3255 3685 3.057736 GTGGAGTAAGCGACTGTTGTCTA 60.058 47.826 0.00 0.00 39.06 2.59
3263 3693 5.073311 AGCGACTGTTGTCTAACATGTAT 57.927 39.130 0.00 0.00 45.16 2.29
3264 3694 6.203808 AGCGACTGTTGTCTAACATGTATA 57.796 37.500 0.00 0.00 45.16 1.47
3265 3695 6.266323 AGCGACTGTTGTCTAACATGTATAG 58.734 40.000 0.00 3.86 45.16 1.31
3266 3696 5.051641 GCGACTGTTGTCTAACATGTATAGC 60.052 44.000 0.00 1.70 45.16 2.97
3267 3697 6.033966 CGACTGTTGTCTAACATGTATAGCA 58.966 40.000 0.00 4.01 45.16 3.49
3268 3698 6.530181 CGACTGTTGTCTAACATGTATAGCAA 59.470 38.462 0.00 9.02 45.16 3.91
3269 3699 7.253783 CGACTGTTGTCTAACATGTATAGCAAG 60.254 40.741 0.00 4.90 45.16 4.01
3270 3700 7.611770 ACTGTTGTCTAACATGTATAGCAAGA 58.388 34.615 0.00 9.26 45.16 3.02
3271 3701 8.260818 ACTGTTGTCTAACATGTATAGCAAGAT 58.739 33.333 0.00 0.00 45.16 2.40
3272 3702 9.102757 CTGTTGTCTAACATGTATAGCAAGATT 57.897 33.333 0.00 0.00 45.16 2.40
3273 3703 9.448438 TGTTGTCTAACATGTATAGCAAGATTT 57.552 29.630 0.00 0.00 41.66 2.17
3282 3712 9.890629 ACATGTATAGCAAGATTTAAAGAGTGA 57.109 29.630 0.00 0.00 0.00 3.41
3285 3715 9.330063 TGTATAGCAAGATTTAAAGAGTGATGG 57.670 33.333 0.00 0.00 0.00 3.51
3286 3716 7.814264 ATAGCAAGATTTAAAGAGTGATGGG 57.186 36.000 0.00 0.00 0.00 4.00
3287 3717 5.574188 AGCAAGATTTAAAGAGTGATGGGT 58.426 37.500 0.00 0.00 0.00 4.51
3288 3718 5.649831 AGCAAGATTTAAAGAGTGATGGGTC 59.350 40.000 0.00 0.00 0.00 4.46
3289 3719 5.163612 GCAAGATTTAAAGAGTGATGGGTCC 60.164 44.000 0.00 0.00 0.00 4.46
3290 3720 5.779241 AGATTTAAAGAGTGATGGGTCCA 57.221 39.130 0.00 0.00 0.00 4.02
3291 3721 5.501156 AGATTTAAAGAGTGATGGGTCCAC 58.499 41.667 0.00 0.00 34.89 4.02
3292 3722 3.713826 TTAAAGAGTGATGGGTCCACC 57.286 47.619 0.00 0.00 40.81 4.61
3321 3751 3.389206 GCTAAGCGGCGACTGAAG 58.611 61.111 12.98 9.90 0.00 3.02
3322 3752 2.167861 GCTAAGCGGCGACTGAAGG 61.168 63.158 12.98 0.59 0.00 3.46
3323 3753 1.511305 CTAAGCGGCGACTGAAGGA 59.489 57.895 12.98 0.00 0.00 3.36
3324 3754 0.108804 CTAAGCGGCGACTGAAGGAA 60.109 55.000 12.98 0.00 0.00 3.36
3325 3755 0.319083 TAAGCGGCGACTGAAGGAAA 59.681 50.000 12.98 0.00 0.00 3.13
3326 3756 0.534203 AAGCGGCGACTGAAGGAAAA 60.534 50.000 12.98 0.00 0.00 2.29
3327 3757 0.321653 AGCGGCGACTGAAGGAAAAT 60.322 50.000 12.98 0.00 0.00 1.82
3328 3758 0.521735 GCGGCGACTGAAGGAAAATT 59.478 50.000 12.98 0.00 0.00 1.82
3329 3759 1.729149 GCGGCGACTGAAGGAAAATTG 60.729 52.381 12.98 0.00 0.00 2.32
3330 3760 1.729149 CGGCGACTGAAGGAAAATTGC 60.729 52.381 0.00 0.00 0.00 3.56
3331 3761 1.606606 GCGACTGAAGGAAAATTGCG 58.393 50.000 0.00 0.00 0.00 4.85
3332 3762 1.196808 GCGACTGAAGGAAAATTGCGA 59.803 47.619 0.00 0.00 0.00 5.10
3333 3763 2.726066 GCGACTGAAGGAAAATTGCGAG 60.726 50.000 0.00 0.00 0.00 5.03
3334 3764 2.159653 CGACTGAAGGAAAATTGCGAGG 60.160 50.000 0.00 0.00 0.00 4.63
3335 3765 1.541588 ACTGAAGGAAAATTGCGAGGC 59.458 47.619 0.00 0.00 0.00 4.70
3336 3766 0.521291 TGAAGGAAAATTGCGAGGCG 59.479 50.000 0.00 0.00 0.00 5.52
3337 3767 0.802494 GAAGGAAAATTGCGAGGCGA 59.198 50.000 0.00 0.00 0.00 5.54
3338 3768 1.401905 GAAGGAAAATTGCGAGGCGAT 59.598 47.619 0.00 0.00 33.55 4.58
3339 3769 1.017387 AGGAAAATTGCGAGGCGATC 58.983 50.000 0.00 0.00 30.45 3.69
3340 3770 1.017387 GGAAAATTGCGAGGCGATCT 58.983 50.000 0.00 0.00 30.45 2.75
3341 3771 1.003438 GGAAAATTGCGAGGCGATCTC 60.003 52.381 0.00 0.00 39.10 2.75
3342 3772 1.003438 GAAAATTGCGAGGCGATCTCC 60.003 52.381 0.00 0.00 39.30 3.71
3343 3773 0.179000 AAATTGCGAGGCGATCTCCT 59.821 50.000 3.23 3.23 39.30 3.69
3344 3774 0.531532 AATTGCGAGGCGATCTCCTG 60.532 55.000 9.52 3.03 39.30 3.86
3345 3775 1.395045 ATTGCGAGGCGATCTCCTGA 61.395 55.000 9.52 0.00 39.30 3.86
3346 3776 2.026879 GCGAGGCGATCTCCTGAC 59.973 66.667 9.52 0.00 39.30 3.51
3347 3777 2.329690 CGAGGCGATCTCCTGACG 59.670 66.667 9.52 3.57 39.30 4.35
3348 3778 2.725008 GAGGCGATCTCCTGACGG 59.275 66.667 9.52 0.00 36.38 4.79
3350 3780 4.933064 GGCGATCTCCTGACGGCG 62.933 72.222 4.80 4.80 41.89 6.46
3352 3782 3.893763 CGATCTCCTGACGGCGCT 61.894 66.667 6.90 0.00 0.00 5.92
3353 3783 2.543802 CGATCTCCTGACGGCGCTA 61.544 63.158 6.90 0.00 0.00 4.26
3354 3784 1.284408 GATCTCCTGACGGCGCTAG 59.716 63.158 6.90 5.27 0.00 3.42
3355 3785 2.136196 GATCTCCTGACGGCGCTAGG 62.136 65.000 20.24 20.24 0.00 3.02
3356 3786 3.905678 CTCCTGACGGCGCTAGGG 61.906 72.222 24.10 14.31 32.39 3.53
3357 3787 4.753662 TCCTGACGGCGCTAGGGT 62.754 66.667 24.10 0.00 32.39 4.34
3358 3788 3.771160 CCTGACGGCGCTAGGGTT 61.771 66.667 18.97 0.00 0.00 4.11
3359 3789 2.420568 CCTGACGGCGCTAGGGTTA 61.421 63.158 18.97 0.00 0.00 2.85
3360 3790 1.065928 CTGACGGCGCTAGGGTTAG 59.934 63.158 6.90 3.19 0.00 2.34
3361 3791 2.351336 CTGACGGCGCTAGGGTTAGG 62.351 65.000 6.90 0.00 0.00 2.69
3362 3792 3.148031 GACGGCGCTAGGGTTAGGG 62.148 68.421 6.90 0.00 41.44 3.53
3363 3793 3.152400 CGGCGCTAGGGTTAGGGT 61.152 66.667 7.64 0.00 40.82 4.34
3364 3794 2.728435 CGGCGCTAGGGTTAGGGTT 61.728 63.158 7.64 0.00 40.82 4.11
3365 3795 1.605992 GGCGCTAGGGTTAGGGTTT 59.394 57.895 7.64 0.00 40.82 3.27
3366 3796 0.034767 GGCGCTAGGGTTAGGGTTTT 60.035 55.000 7.64 0.00 40.82 2.43
3367 3797 1.092348 GCGCTAGGGTTAGGGTTTTG 58.908 55.000 8.77 0.00 40.82 2.44
3368 3798 1.339342 GCGCTAGGGTTAGGGTTTTGA 60.339 52.381 8.77 0.00 40.82 2.69
3369 3799 2.353323 CGCTAGGGTTAGGGTTTTGAC 58.647 52.381 0.00 0.00 35.67 3.18
3370 3800 2.027469 CGCTAGGGTTAGGGTTTTGACT 60.027 50.000 0.00 0.00 35.67 3.41
3371 3801 3.196254 CGCTAGGGTTAGGGTTTTGACTA 59.804 47.826 0.00 0.00 35.67 2.59
3372 3802 4.511527 GCTAGGGTTAGGGTTTTGACTAC 58.488 47.826 0.00 0.00 0.00 2.73
3373 3803 3.690475 AGGGTTAGGGTTTTGACTACG 57.310 47.619 0.00 0.00 0.00 3.51
3374 3804 2.303890 AGGGTTAGGGTTTTGACTACGG 59.696 50.000 0.00 0.00 0.00 4.02
3375 3805 2.616256 GGGTTAGGGTTTTGACTACGGG 60.616 54.545 0.00 0.00 0.00 5.28
3376 3806 2.616256 GGTTAGGGTTTTGACTACGGGG 60.616 54.545 0.00 0.00 0.00 5.73
3377 3807 1.278537 TAGGGTTTTGACTACGGGGG 58.721 55.000 0.00 0.00 0.00 5.40
3378 3808 0.769386 AGGGTTTTGACTACGGGGGT 60.769 55.000 0.00 0.00 0.00 4.95
3379 3809 0.607217 GGGTTTTGACTACGGGGGTG 60.607 60.000 0.00 0.00 0.00 4.61
3380 3810 0.607217 GGTTTTGACTACGGGGGTGG 60.607 60.000 0.00 0.00 0.00 4.61
3381 3811 0.109153 GTTTTGACTACGGGGGTGGT 59.891 55.000 0.00 0.00 0.00 4.16
3382 3812 0.108963 TTTTGACTACGGGGGTGGTG 59.891 55.000 0.00 0.00 0.00 4.17
3383 3813 0.763604 TTTGACTACGGGGGTGGTGA 60.764 55.000 0.00 0.00 0.00 4.02
3384 3814 1.189524 TTGACTACGGGGGTGGTGAG 61.190 60.000 0.00 0.00 0.00 3.51
3385 3815 1.304713 GACTACGGGGGTGGTGAGA 60.305 63.158 0.00 0.00 0.00 3.27
3386 3816 0.686769 GACTACGGGGGTGGTGAGAT 60.687 60.000 0.00 0.00 0.00 2.75
3387 3817 0.252558 ACTACGGGGGTGGTGAGATT 60.253 55.000 0.00 0.00 0.00 2.40
3388 3818 1.007479 ACTACGGGGGTGGTGAGATTA 59.993 52.381 0.00 0.00 0.00 1.75
3389 3819 1.411612 CTACGGGGGTGGTGAGATTAC 59.588 57.143 0.00 0.00 0.00 1.89
3390 3820 1.143183 CGGGGGTGGTGAGATTACG 59.857 63.158 0.00 0.00 0.00 3.18
3391 3821 1.525442 GGGGGTGGTGAGATTACGG 59.475 63.158 0.00 0.00 0.00 4.02
3392 3822 1.269703 GGGGGTGGTGAGATTACGGT 61.270 60.000 0.00 0.00 0.00 4.83
3393 3823 0.107848 GGGGTGGTGAGATTACGGTG 60.108 60.000 0.00 0.00 0.00 4.94
3394 3824 0.107848 GGGTGGTGAGATTACGGTGG 60.108 60.000 0.00 0.00 0.00 4.61
3395 3825 0.611714 GGTGGTGAGATTACGGTGGT 59.388 55.000 0.00 0.00 0.00 4.16
3396 3826 1.674817 GGTGGTGAGATTACGGTGGTG 60.675 57.143 0.00 0.00 0.00 4.17
3397 3827 1.001633 GTGGTGAGATTACGGTGGTGT 59.998 52.381 0.00 0.00 0.00 4.16
3398 3828 1.274167 TGGTGAGATTACGGTGGTGTC 59.726 52.381 0.00 0.00 0.00 3.67
3399 3829 1.549170 GGTGAGATTACGGTGGTGTCT 59.451 52.381 0.00 0.00 0.00 3.41
3400 3830 2.607187 GTGAGATTACGGTGGTGTCTG 58.393 52.381 0.00 0.00 0.00 3.51
3401 3831 1.548719 TGAGATTACGGTGGTGTCTGG 59.451 52.381 0.00 0.00 0.00 3.86
3402 3832 0.902531 AGATTACGGTGGTGTCTGGG 59.097 55.000 0.00 0.00 0.00 4.45
3403 3833 0.107848 GATTACGGTGGTGTCTGGGG 60.108 60.000 0.00 0.00 0.00 4.96
3404 3834 2.193087 ATTACGGTGGTGTCTGGGGC 62.193 60.000 0.00 0.00 0.00 5.80
3422 3852 4.500116 GGCGACTGCGTCTCCCTC 62.500 72.222 6.48 0.00 44.10 4.30
3423 3853 4.838486 GCGACTGCGTCTCCCTCG 62.838 72.222 7.03 0.00 40.36 4.63
3424 3854 3.125573 CGACTGCGTCTCCCTCGA 61.126 66.667 7.03 0.00 0.00 4.04
3425 3855 2.486042 GACTGCGTCTCCCTCGAC 59.514 66.667 2.10 0.00 0.00 4.20
3426 3856 2.282251 ACTGCGTCTCCCTCGACA 60.282 61.111 0.00 0.00 33.54 4.35
3427 3857 2.179517 CTGCGTCTCCCTCGACAC 59.820 66.667 0.00 0.00 33.54 3.67
3428 3858 3.669036 CTGCGTCTCCCTCGACACG 62.669 68.421 0.00 0.00 33.98 4.49
3429 3859 4.477975 GCGTCTCCCTCGACACGG 62.478 72.222 0.00 0.00 31.77 4.94
3430 3860 2.745100 CGTCTCCCTCGACACGGA 60.745 66.667 0.00 0.00 33.54 4.69
3431 3861 2.876219 GTCTCCCTCGACACGGAC 59.124 66.667 0.00 0.00 34.11 4.79
3432 3862 1.674980 GTCTCCCTCGACACGGACT 60.675 63.158 0.00 0.00 34.11 3.85
3433 3863 1.674651 TCTCCCTCGACACGGACTG 60.675 63.158 0.00 0.00 0.00 3.51
3434 3864 2.675423 TCCCTCGACACGGACTGG 60.675 66.667 0.00 0.00 0.00 4.00
3435 3865 2.989824 CCCTCGACACGGACTGGT 60.990 66.667 0.00 0.00 0.00 4.00
3436 3866 2.258591 CCTCGACACGGACTGGTG 59.741 66.667 0.00 0.00 43.54 4.17
3442 3872 3.377656 CACGGACTGGTGTAGCCT 58.622 61.111 0.00 0.00 38.35 4.58
3443 3873 1.215647 CACGGACTGGTGTAGCCTC 59.784 63.158 0.00 0.00 38.35 4.70
3444 3874 1.982938 ACGGACTGGTGTAGCCTCC 60.983 63.158 0.00 0.00 38.35 4.30
3445 3875 2.722201 CGGACTGGTGTAGCCTCCC 61.722 68.421 0.00 0.00 38.35 4.30
3446 3876 1.306226 GGACTGGTGTAGCCTCCCT 60.306 63.158 0.00 0.00 38.35 4.20
3447 3877 1.331399 GGACTGGTGTAGCCTCCCTC 61.331 65.000 0.00 0.00 38.35 4.30
3448 3878 1.306226 ACTGGTGTAGCCTCCCTCC 60.306 63.158 0.00 0.00 38.35 4.30
3449 3879 1.002274 CTGGTGTAGCCTCCCTCCT 59.998 63.158 0.00 0.00 38.35 3.69
3450 3880 1.001760 TGGTGTAGCCTCCCTCCTC 59.998 63.158 0.00 0.00 38.35 3.71
3451 3881 1.762858 GGTGTAGCCTCCCTCCTCC 60.763 68.421 0.00 0.00 0.00 4.30
3452 3882 1.001760 GTGTAGCCTCCCTCCTCCA 59.998 63.158 0.00 0.00 0.00 3.86
3453 3883 1.001760 TGTAGCCTCCCTCCTCCAC 59.998 63.158 0.00 0.00 0.00 4.02
3454 3884 2.128507 GTAGCCTCCCTCCTCCACG 61.129 68.421 0.00 0.00 0.00 4.94
3455 3885 3.375443 TAGCCTCCCTCCTCCACGG 62.375 68.421 0.00 0.00 0.00 4.94
3457 3887 3.077556 CCTCCCTCCTCCACGGTG 61.078 72.222 0.00 0.00 0.00 4.94
3458 3888 3.775654 CTCCCTCCTCCACGGTGC 61.776 72.222 1.68 0.00 0.00 5.01
3480 3910 4.161295 CCATGGCGGAGAAGGCGA 62.161 66.667 0.00 0.00 39.82 5.54
3481 3911 2.109799 CATGGCGGAGAAGGCGAT 59.890 61.111 0.00 0.00 39.82 4.58
3482 3912 2.109799 ATGGCGGAGAAGGCGATG 59.890 61.111 0.00 0.00 39.82 3.84
3483 3913 3.466791 ATGGCGGAGAAGGCGATGG 62.467 63.158 0.00 0.00 39.82 3.51
3484 3914 4.162690 GGCGGAGAAGGCGATGGT 62.163 66.667 0.00 0.00 0.00 3.55
3485 3915 2.892425 GCGGAGAAGGCGATGGTG 60.892 66.667 0.00 0.00 0.00 4.17
3486 3916 2.892425 CGGAGAAGGCGATGGTGC 60.892 66.667 0.00 0.00 0.00 5.01
3487 3917 2.268920 GGAGAAGGCGATGGTGCA 59.731 61.111 0.00 0.00 36.28 4.57
3488 3918 1.377202 GGAGAAGGCGATGGTGCAA 60.377 57.895 0.00 0.00 36.28 4.08
3489 3919 0.749454 GGAGAAGGCGATGGTGCAAT 60.749 55.000 0.00 0.00 36.28 3.56
3490 3920 0.659957 GAGAAGGCGATGGTGCAATC 59.340 55.000 0.00 0.00 36.28 2.67
3491 3921 0.254178 AGAAGGCGATGGTGCAATCT 59.746 50.000 0.00 0.00 36.28 2.40
3492 3922 0.379669 GAAGGCGATGGTGCAATCTG 59.620 55.000 0.00 0.00 36.28 2.90
3493 3923 1.660560 AAGGCGATGGTGCAATCTGC 61.661 55.000 0.00 0.00 45.29 4.26
3502 3932 4.055654 GCAATCTGCGGAGATCCC 57.944 61.111 20.43 10.15 38.03 3.85
3511 3941 2.582436 GGAGATCCCGGCGACAAA 59.418 61.111 9.30 0.00 0.00 2.83
3512 3942 1.521681 GGAGATCCCGGCGACAAAG 60.522 63.158 9.30 0.00 0.00 2.77
3513 3943 1.521681 GAGATCCCGGCGACAAAGG 60.522 63.158 9.30 0.00 0.00 3.11
3514 3944 3.202706 GATCCCGGCGACAAAGGC 61.203 66.667 9.30 0.00 0.00 4.35
3515 3945 3.969250 GATCCCGGCGACAAAGGCA 62.969 63.158 9.30 0.00 36.37 4.75
3516 3946 3.561120 ATCCCGGCGACAAAGGCAA 62.561 57.895 9.30 0.00 36.37 4.52
3517 3947 3.291383 CCCGGCGACAAAGGCAAA 61.291 61.111 9.30 0.00 36.37 3.68
3518 3948 2.050442 CCGGCGACAAAGGCAAAC 60.050 61.111 9.30 0.00 36.37 2.93
3519 3949 2.050442 CGGCGACAAAGGCAAACC 60.050 61.111 0.00 0.00 36.37 3.27
3520 3950 2.338620 GGCGACAAAGGCAAACCC 59.661 61.111 0.00 0.00 36.11 4.11
3521 3951 2.050442 GCGACAAAGGCAAACCCG 60.050 61.111 0.00 0.00 39.21 5.28
3522 3952 2.548295 GCGACAAAGGCAAACCCGA 61.548 57.895 0.00 0.00 39.21 5.14
3523 3953 1.281656 CGACAAAGGCAAACCCGAC 59.718 57.895 0.00 0.00 39.21 4.79
3524 3954 1.281656 GACAAAGGCAAACCCGACG 59.718 57.895 0.00 0.00 39.21 5.12
3525 3955 2.125202 GACAAAGGCAAACCCGACGG 62.125 60.000 6.99 6.99 39.21 4.79
3526 3956 3.292159 AAAGGCAAACCCGACGGC 61.292 61.111 8.86 0.00 39.21 5.68
3531 3961 2.968156 CAAACCCGACGGCGACAA 60.968 61.111 15.16 0.00 40.82 3.18
3532 3962 2.968697 AAACCCGACGGCGACAAC 60.969 61.111 15.16 0.69 40.82 3.32
3543 3973 3.993584 CGACAACGACCCCGGGAA 61.994 66.667 26.32 0.00 42.66 3.97
3544 3974 2.426887 GACAACGACCCCGGGAAA 59.573 61.111 26.32 0.00 40.78 3.13
3545 3975 1.227913 GACAACGACCCCGGGAAAA 60.228 57.895 26.32 0.00 40.78 2.29
3546 3976 1.228033 ACAACGACCCCGGGAAAAG 60.228 57.895 26.32 12.99 40.78 2.27
3547 3977 2.281970 AACGACCCCGGGAAAAGC 60.282 61.111 26.32 4.92 40.78 3.51
3548 3978 3.122727 AACGACCCCGGGAAAAGCA 62.123 57.895 26.32 0.00 40.78 3.91
3549 3979 2.281900 CGACCCCGGGAAAAGCAA 60.282 61.111 26.32 0.00 0.00 3.91
3550 3980 2.622962 CGACCCCGGGAAAAGCAAC 61.623 63.158 26.32 2.64 0.00 4.17
3551 3981 2.596338 ACCCCGGGAAAAGCAACG 60.596 61.111 26.32 3.59 0.00 4.10
3552 3982 2.281900 CCCCGGGAAAAGCAACGA 60.282 61.111 26.32 0.00 0.00 3.85
3553 3983 2.332654 CCCCGGGAAAAGCAACGAG 61.333 63.158 26.32 0.00 0.00 4.18
3554 3984 1.599797 CCCGGGAAAAGCAACGAGT 60.600 57.895 18.48 0.00 0.00 4.18
3555 3985 1.574428 CCGGGAAAAGCAACGAGTG 59.426 57.895 0.00 0.00 0.00 3.51
3556 3986 1.574428 CGGGAAAAGCAACGAGTGG 59.426 57.895 0.00 0.00 0.00 4.00
3557 3987 1.852067 CGGGAAAAGCAACGAGTGGG 61.852 60.000 0.00 0.00 0.00 4.61
3558 3988 1.524008 GGGAAAAGCAACGAGTGGGG 61.524 60.000 0.00 0.00 0.00 4.96
3559 3989 1.524008 GGAAAAGCAACGAGTGGGGG 61.524 60.000 0.00 0.00 0.00 5.40
3560 3990 2.142357 GAAAAGCAACGAGTGGGGGC 62.142 60.000 0.00 0.00 0.00 5.80
3561 3991 2.640581 AAAAGCAACGAGTGGGGGCT 62.641 55.000 0.00 0.00 36.13 5.19
3562 3992 3.553095 AAGCAACGAGTGGGGGCTC 62.553 63.158 0.00 0.00 32.84 4.70
3563 3993 4.021925 GCAACGAGTGGGGGCTCT 62.022 66.667 0.00 0.00 33.55 4.09
3564 3994 2.750350 CAACGAGTGGGGGCTCTT 59.250 61.111 0.00 0.00 33.55 2.85
3565 3995 1.376037 CAACGAGTGGGGGCTCTTC 60.376 63.158 0.00 0.00 33.55 2.87
3566 3996 1.536662 AACGAGTGGGGGCTCTTCT 60.537 57.895 0.00 0.00 33.55 2.85
3567 3997 0.252103 AACGAGTGGGGGCTCTTCTA 60.252 55.000 0.00 0.00 33.55 2.10
3568 3998 0.684805 ACGAGTGGGGGCTCTTCTAG 60.685 60.000 0.00 0.00 33.55 2.43
3579 4009 1.988293 CTCTTCTAGCTCCCCGATCA 58.012 55.000 0.00 0.00 0.00 2.92
3580 4010 1.611491 CTCTTCTAGCTCCCCGATCAC 59.389 57.143 0.00 0.00 0.00 3.06
3581 4011 1.063942 TCTTCTAGCTCCCCGATCACA 60.064 52.381 0.00 0.00 0.00 3.58
3582 4012 1.967066 CTTCTAGCTCCCCGATCACAT 59.033 52.381 0.00 0.00 0.00 3.21
3583 4013 1.332195 TCTAGCTCCCCGATCACATG 58.668 55.000 0.00 0.00 0.00 3.21
3584 4014 0.320247 CTAGCTCCCCGATCACATGC 60.320 60.000 0.00 0.00 0.00 4.06
3585 4015 1.048160 TAGCTCCCCGATCACATGCA 61.048 55.000 0.00 0.00 0.00 3.96
3586 4016 1.451927 GCTCCCCGATCACATGCAA 60.452 57.895 0.00 0.00 0.00 4.08
3587 4017 1.442526 GCTCCCCGATCACATGCAAG 61.443 60.000 0.00 0.00 0.00 4.01
3588 4018 0.178767 CTCCCCGATCACATGCAAGA 59.821 55.000 0.00 0.00 0.00 3.02
3589 4019 0.107703 TCCCCGATCACATGCAAGAC 60.108 55.000 0.00 0.00 0.00 3.01
3590 4020 1.431488 CCCCGATCACATGCAAGACG 61.431 60.000 0.00 0.00 0.00 4.18
3591 4021 1.349627 CCGATCACATGCAAGACGC 59.650 57.895 0.00 0.00 42.89 5.19
3592 4022 1.349627 CGATCACATGCAAGACGCC 59.650 57.895 0.00 0.00 41.33 5.68
3593 4023 1.360931 CGATCACATGCAAGACGCCA 61.361 55.000 0.00 0.00 41.33 5.69
3594 4024 0.376152 GATCACATGCAAGACGCCAG 59.624 55.000 0.00 0.00 41.33 4.85
3595 4025 0.036105 ATCACATGCAAGACGCCAGA 60.036 50.000 0.00 0.00 41.33 3.86
3596 4026 0.036105 TCACATGCAAGACGCCAGAT 60.036 50.000 0.00 0.00 41.33 2.90
3597 4027 0.376152 CACATGCAAGACGCCAGATC 59.624 55.000 0.00 0.00 41.33 2.75
3598 4028 0.745845 ACATGCAAGACGCCAGATCC 60.746 55.000 0.00 0.00 41.33 3.36
3599 4029 0.463295 CATGCAAGACGCCAGATCCT 60.463 55.000 0.00 0.00 41.33 3.24
3600 4030 1.123077 ATGCAAGACGCCAGATCCTA 58.877 50.000 0.00 0.00 41.33 2.94
3601 4031 0.175760 TGCAAGACGCCAGATCCTAC 59.824 55.000 0.00 0.00 41.33 3.18
3602 4032 0.530870 GCAAGACGCCAGATCCTACC 60.531 60.000 0.00 0.00 32.94 3.18
3603 4033 0.249073 CAAGACGCCAGATCCTACCG 60.249 60.000 0.00 0.00 0.00 4.02
3604 4034 2.017559 AAGACGCCAGATCCTACCGC 62.018 60.000 0.00 0.00 0.00 5.68
3605 4035 2.758327 ACGCCAGATCCTACCGCA 60.758 61.111 0.00 0.00 0.00 5.69
3606 4036 2.292794 GACGCCAGATCCTACCGCAA 62.293 60.000 0.00 0.00 0.00 4.85
3607 4037 1.592669 CGCCAGATCCTACCGCAAG 60.593 63.158 0.00 0.00 0.00 4.01
3608 4038 1.889573 GCCAGATCCTACCGCAAGC 60.890 63.158 0.00 0.00 0.00 4.01
3609 4039 1.227674 CCAGATCCTACCGCAAGCC 60.228 63.158 0.00 0.00 0.00 4.35
3610 4040 1.690219 CCAGATCCTACCGCAAGCCT 61.690 60.000 0.00 0.00 0.00 4.58
3611 4041 0.249657 CAGATCCTACCGCAAGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
3612 4042 0.397816 AGATCCTACCGCAAGCCTCT 60.398 55.000 0.00 0.00 0.00 3.69
3613 4043 0.032815 GATCCTACCGCAAGCCTCTC 59.967 60.000 0.00 0.00 0.00 3.20
3614 4044 0.687757 ATCCTACCGCAAGCCTCTCA 60.688 55.000 0.00 0.00 0.00 3.27
3615 4045 1.142748 CCTACCGCAAGCCTCTCAG 59.857 63.158 0.00 0.00 0.00 3.35
3616 4046 1.520342 CTACCGCAAGCCTCTCAGC 60.520 63.158 0.00 0.00 0.00 4.26
3618 4048 0.683179 TACCGCAAGCCTCTCAGCTA 60.683 55.000 0.00 0.00 44.11 3.32
3619 4049 1.227205 CCGCAAGCCTCTCAGCTAG 60.227 63.158 0.00 0.00 44.11 3.42
3620 4050 1.227205 CGCAAGCCTCTCAGCTAGG 60.227 63.158 0.00 0.00 44.11 3.02
3621 4051 1.670949 CGCAAGCCTCTCAGCTAGGA 61.671 60.000 5.13 0.00 44.11 2.94
3622 4052 0.758123 GCAAGCCTCTCAGCTAGGAT 59.242 55.000 5.13 0.00 44.11 3.24
3623 4053 1.540797 GCAAGCCTCTCAGCTAGGATG 60.541 57.143 5.13 4.40 44.11 3.51
3624 4054 1.070445 CAAGCCTCTCAGCTAGGATGG 59.930 57.143 5.13 0.00 44.11 3.51
3625 4055 0.471591 AGCCTCTCAGCTAGGATGGG 60.472 60.000 5.13 0.00 42.70 4.00
3626 4056 0.470833 GCCTCTCAGCTAGGATGGGA 60.471 60.000 5.13 0.00 36.08 4.37
3627 4057 1.631405 CCTCTCAGCTAGGATGGGAG 58.369 60.000 5.78 5.78 43.65 4.30
3628 4058 1.631405 CTCTCAGCTAGGATGGGAGG 58.369 60.000 4.93 0.00 40.89 4.30
3629 4059 0.189574 TCTCAGCTAGGATGGGAGGG 59.810 60.000 0.00 0.00 0.00 4.30
3630 4060 0.189574 CTCAGCTAGGATGGGAGGGA 59.810 60.000 0.00 0.00 0.00 4.20
3631 4061 0.870313 TCAGCTAGGATGGGAGGGAT 59.130 55.000 0.00 0.00 0.00 3.85
3632 4062 0.982704 CAGCTAGGATGGGAGGGATG 59.017 60.000 0.00 0.00 0.00 3.51
3633 4063 0.178879 AGCTAGGATGGGAGGGATGG 60.179 60.000 0.00 0.00 0.00 3.51
3634 4064 0.474660 GCTAGGATGGGAGGGATGGT 60.475 60.000 0.00 0.00 0.00 3.55
3635 4065 2.047742 GCTAGGATGGGAGGGATGGTT 61.048 57.143 0.00 0.00 0.00 3.67
3636 4066 2.422746 CTAGGATGGGAGGGATGGTTT 58.577 52.381 0.00 0.00 0.00 3.27
3637 4067 1.698874 AGGATGGGAGGGATGGTTTT 58.301 50.000 0.00 0.00 0.00 2.43
3638 4068 1.288932 AGGATGGGAGGGATGGTTTTG 59.711 52.381 0.00 0.00 0.00 2.44
3639 4069 1.114627 GATGGGAGGGATGGTTTTGC 58.885 55.000 0.00 0.00 0.00 3.68
3640 4070 0.712380 ATGGGAGGGATGGTTTTGCT 59.288 50.000 0.00 0.00 0.00 3.91
3641 4071 0.251742 TGGGAGGGATGGTTTTGCTG 60.252 55.000 0.00 0.00 0.00 4.41
3642 4072 0.972471 GGGAGGGATGGTTTTGCTGG 60.972 60.000 0.00 0.00 0.00 4.85
3643 4073 0.039618 GGAGGGATGGTTTTGCTGGA 59.960 55.000 0.00 0.00 0.00 3.86
3644 4074 1.342374 GGAGGGATGGTTTTGCTGGAT 60.342 52.381 0.00 0.00 0.00 3.41
3645 4075 2.091885 GGAGGGATGGTTTTGCTGGATA 60.092 50.000 0.00 0.00 0.00 2.59
3646 4076 3.627237 GGAGGGATGGTTTTGCTGGATAA 60.627 47.826 0.00 0.00 0.00 1.75
3647 4077 3.633986 GAGGGATGGTTTTGCTGGATAAG 59.366 47.826 0.00 0.00 0.00 1.73
3648 4078 2.695147 GGGATGGTTTTGCTGGATAAGG 59.305 50.000 0.00 0.00 0.00 2.69
3649 4079 3.627237 GGGATGGTTTTGCTGGATAAGGA 60.627 47.826 0.00 0.00 0.00 3.36
3650 4080 3.633986 GGATGGTTTTGCTGGATAAGGAG 59.366 47.826 0.00 0.00 0.00 3.69
3651 4081 3.085952 TGGTTTTGCTGGATAAGGAGG 57.914 47.619 0.00 0.00 0.00 4.30
3652 4082 1.751351 GGTTTTGCTGGATAAGGAGGC 59.249 52.381 0.00 0.00 0.00 4.70
3653 4083 1.401905 GTTTTGCTGGATAAGGAGGCG 59.598 52.381 0.00 0.00 0.00 5.52
3654 4084 0.107214 TTTGCTGGATAAGGAGGCGG 60.107 55.000 0.00 0.00 0.00 6.13
3655 4085 0.980754 TTGCTGGATAAGGAGGCGGA 60.981 55.000 0.00 0.00 0.00 5.54
3656 4086 1.369321 GCTGGATAAGGAGGCGGAG 59.631 63.158 0.00 0.00 0.00 4.63
3657 4087 2.053618 CTGGATAAGGAGGCGGAGG 58.946 63.158 0.00 0.00 0.00 4.30
3658 4088 1.459539 TGGATAAGGAGGCGGAGGG 60.460 63.158 0.00 0.00 0.00 4.30
3659 4089 1.459730 GGATAAGGAGGCGGAGGGT 60.460 63.158 0.00 0.00 0.00 4.34
3660 4090 1.054978 GGATAAGGAGGCGGAGGGTT 61.055 60.000 0.00 0.00 0.00 4.11
3661 4091 0.837940 GATAAGGAGGCGGAGGGTTT 59.162 55.000 0.00 0.00 0.00 3.27
3662 4092 0.837940 ATAAGGAGGCGGAGGGTTTC 59.162 55.000 0.00 0.00 0.00 2.78
3663 4093 1.610554 TAAGGAGGCGGAGGGTTTCG 61.611 60.000 0.00 0.00 0.00 3.46
3664 4094 3.703127 GGAGGCGGAGGGTTTCGT 61.703 66.667 0.00 0.00 0.00 3.85
3665 4095 2.125633 GAGGCGGAGGGTTTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
3666 4096 2.603776 AGGCGGAGGGTTTCGTCT 60.604 61.111 0.00 0.00 36.44 4.18
3667 4097 2.168666 GAGGCGGAGGGTTTCGTCTT 62.169 60.000 0.00 0.00 41.65 3.01
3668 4098 1.740664 GGCGGAGGGTTTCGTCTTC 60.741 63.158 0.00 0.00 0.00 2.87
3669 4099 2.092882 GCGGAGGGTTTCGTCTTCG 61.093 63.158 0.00 0.00 38.55 3.79
3670 4100 1.582968 CGGAGGGTTTCGTCTTCGA 59.417 57.895 0.00 0.00 44.66 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.501950 GCATTGGACGAGATTTTGGTTC 58.498 45.455 0.00 0.00 0.00 3.62
40 41 3.567164 GCTGTGCATTAGAATGTAGGCAT 59.433 43.478 5.24 0.00 38.65 4.40
44 48 5.050499 GTGCTAGCTGTGCATTAGAATGTAG 60.050 44.000 17.23 2.63 42.69 2.74
73 77 0.815734 TTCACAGGTACGGCTAGAGC 59.184 55.000 0.00 0.00 41.14 4.09
142 147 2.792196 CGGATGCATTTTGTCATGTCCG 60.792 50.000 0.00 1.60 36.83 4.79
172 181 6.351286 CCAAATTTTAAGAGGATTGGACAGGG 60.351 42.308 0.00 0.00 39.69 4.45
304 637 4.422546 AACTCAGTAACAGTCGCTAGTC 57.577 45.455 0.00 0.00 0.00 2.59
310 643 5.572126 GCCTTAACTAACTCAGTAACAGTCG 59.428 44.000 0.00 0.00 36.04 4.18
352 685 4.452795 ACCTTCGCTTTAGCTTCTCTTTTC 59.547 41.667 0.00 0.00 39.32 2.29
359 692 2.143925 ACACACCTTCGCTTTAGCTTC 58.856 47.619 0.00 0.00 39.32 3.86
1626 1972 1.895886 ATGCCTGGAGGAGGAGGTCT 61.896 60.000 0.00 0.00 46.33 3.85
2232 2590 2.741985 TCGGCCGTGAACATGCTG 60.742 61.111 27.15 0.00 0.00 4.41
2633 2991 2.652496 GCTCGATGTCCGCGTCTC 60.652 66.667 4.92 0.00 38.37 3.36
2634 2992 4.538283 CGCTCGATGTCCGCGTCT 62.538 66.667 4.92 0.00 41.78 4.18
2681 3039 1.280746 CGGCTCAAGCTGTGTTGTG 59.719 57.895 2.53 0.00 42.29 3.33
2682 3040 1.893808 CCGGCTCAAGCTGTGTTGT 60.894 57.895 9.84 0.00 45.66 3.32
2683 3041 2.620112 CCCGGCTCAAGCTGTGTTG 61.620 63.158 9.84 0.00 45.66 3.33
2684 3042 2.281761 CCCGGCTCAAGCTGTGTT 60.282 61.111 9.84 0.00 45.66 3.32
2871 3238 6.967897 AGGAGGAGCAGATATTTTCTTTTCT 58.032 36.000 0.00 0.00 29.93 2.52
2872 3239 7.990314 ACTAGGAGGAGCAGATATTTTCTTTTC 59.010 37.037 0.00 0.00 29.93 2.29
2873 3240 7.866870 ACTAGGAGGAGCAGATATTTTCTTTT 58.133 34.615 0.00 0.00 29.93 2.27
2874 3241 7.444703 ACTAGGAGGAGCAGATATTTTCTTT 57.555 36.000 0.00 0.00 29.93 2.52
2875 3242 7.255660 CGTACTAGGAGGAGCAGATATTTTCTT 60.256 40.741 0.00 0.00 29.93 2.52
2876 3243 6.207810 CGTACTAGGAGGAGCAGATATTTTCT 59.792 42.308 0.00 0.00 33.90 2.52
2887 3255 2.220313 CCACTACGTACTAGGAGGAGC 58.780 57.143 0.58 0.00 0.00 4.70
2981 3406 4.065281 GGACCAGACACCGACCCG 62.065 72.222 0.00 0.00 0.00 5.28
2982 3407 2.920912 TGGACCAGACACCGACCC 60.921 66.667 0.00 0.00 0.00 4.46
3190 3619 9.130312 GCAAAAACAAATCACGTGGTATATAAA 57.870 29.630 17.00 0.00 0.00 1.40
3215 3644 3.455619 CACAAATCACGTGGTTCTAGC 57.544 47.619 15.69 0.00 0.00 3.42
3263 3693 6.721318 ACCCATCACTCTTTAAATCTTGCTA 58.279 36.000 0.00 0.00 0.00 3.49
3264 3694 5.574188 ACCCATCACTCTTTAAATCTTGCT 58.426 37.500 0.00 0.00 0.00 3.91
3265 3695 5.163612 GGACCCATCACTCTTTAAATCTTGC 60.164 44.000 0.00 0.00 0.00 4.01
3266 3696 5.945784 TGGACCCATCACTCTTTAAATCTTG 59.054 40.000 0.00 0.00 0.00 3.02
3267 3697 5.946377 GTGGACCCATCACTCTTTAAATCTT 59.054 40.000 0.00 0.00 32.78 2.40
3268 3698 5.501156 GTGGACCCATCACTCTTTAAATCT 58.499 41.667 0.00 0.00 32.78 2.40
3269 3699 4.640647 GGTGGACCCATCACTCTTTAAATC 59.359 45.833 0.00 0.00 35.61 2.17
3270 3700 4.044065 TGGTGGACCCATCACTCTTTAAAT 59.956 41.667 0.00 0.00 38.72 1.40
3271 3701 3.396276 TGGTGGACCCATCACTCTTTAAA 59.604 43.478 0.00 0.00 38.72 1.52
3272 3702 2.983192 TGGTGGACCCATCACTCTTTAA 59.017 45.455 0.00 0.00 38.72 1.52
3273 3703 2.626785 TGGTGGACCCATCACTCTTTA 58.373 47.619 0.00 0.00 38.72 1.85
3274 3704 1.444933 TGGTGGACCCATCACTCTTT 58.555 50.000 0.00 0.00 38.72 2.52
3275 3705 3.180449 TGGTGGACCCATCACTCTT 57.820 52.632 0.00 0.00 38.72 2.85
3276 3706 4.998839 TGGTGGACCCATCACTCT 57.001 55.556 0.00 0.00 38.72 3.24
3290 3720 0.601841 CTTAGCGTTTCACCCGTGGT 60.602 55.000 0.00 0.00 35.62 4.16
3291 3721 1.908066 GCTTAGCGTTTCACCCGTGG 61.908 60.000 0.00 0.00 0.00 4.94
3292 3722 1.495951 GCTTAGCGTTTCACCCGTG 59.504 57.895 0.00 0.00 0.00 4.94
3293 3723 3.961729 GCTTAGCGTTTCACCCGT 58.038 55.556 0.00 0.00 0.00 5.28
3304 3734 2.167861 CCTTCAGTCGCCGCTTAGC 61.168 63.158 0.00 0.00 0.00 3.09
3305 3735 0.108804 TTCCTTCAGTCGCCGCTTAG 60.109 55.000 0.00 0.00 0.00 2.18
3306 3736 0.319083 TTTCCTTCAGTCGCCGCTTA 59.681 50.000 0.00 0.00 0.00 3.09
3307 3737 0.534203 TTTTCCTTCAGTCGCCGCTT 60.534 50.000 0.00 0.00 0.00 4.68
3308 3738 0.321653 ATTTTCCTTCAGTCGCCGCT 60.322 50.000 0.00 0.00 0.00 5.52
3309 3739 0.521735 AATTTTCCTTCAGTCGCCGC 59.478 50.000 0.00 0.00 0.00 6.53
3310 3740 1.729149 GCAATTTTCCTTCAGTCGCCG 60.729 52.381 0.00 0.00 0.00 6.46
3311 3741 1.729149 CGCAATTTTCCTTCAGTCGCC 60.729 52.381 0.00 0.00 0.00 5.54
3312 3742 1.196808 TCGCAATTTTCCTTCAGTCGC 59.803 47.619 0.00 0.00 0.00 5.19
3313 3743 2.159653 CCTCGCAATTTTCCTTCAGTCG 60.160 50.000 0.00 0.00 0.00 4.18
3314 3744 2.414691 GCCTCGCAATTTTCCTTCAGTC 60.415 50.000 0.00 0.00 0.00 3.51
3315 3745 1.541588 GCCTCGCAATTTTCCTTCAGT 59.458 47.619 0.00 0.00 0.00 3.41
3316 3746 1.466360 CGCCTCGCAATTTTCCTTCAG 60.466 52.381 0.00 0.00 0.00 3.02
3317 3747 0.521291 CGCCTCGCAATTTTCCTTCA 59.479 50.000 0.00 0.00 0.00 3.02
3318 3748 0.802494 TCGCCTCGCAATTTTCCTTC 59.198 50.000 0.00 0.00 0.00 3.46
3319 3749 1.401905 GATCGCCTCGCAATTTTCCTT 59.598 47.619 0.00 0.00 0.00 3.36
3320 3750 1.017387 GATCGCCTCGCAATTTTCCT 58.983 50.000 0.00 0.00 0.00 3.36
3321 3751 1.003438 GAGATCGCCTCGCAATTTTCC 60.003 52.381 0.00 0.00 31.32 3.13
3322 3752 1.003438 GGAGATCGCCTCGCAATTTTC 60.003 52.381 8.44 0.00 42.89 2.29
3323 3753 1.017387 GGAGATCGCCTCGCAATTTT 58.983 50.000 8.44 0.00 42.89 1.82
3324 3754 0.179000 AGGAGATCGCCTCGCAATTT 59.821 50.000 12.90 0.00 42.89 1.82
3325 3755 0.531532 CAGGAGATCGCCTCGCAATT 60.532 55.000 16.00 0.00 42.89 2.32
3326 3756 1.068753 CAGGAGATCGCCTCGCAAT 59.931 57.895 16.00 0.00 42.89 3.56
3327 3757 2.052104 TCAGGAGATCGCCTCGCAA 61.052 57.895 16.00 0.00 42.89 4.85
3328 3758 2.440247 TCAGGAGATCGCCTCGCA 60.440 61.111 16.00 0.00 42.89 5.10
3329 3759 2.026879 GTCAGGAGATCGCCTCGC 59.973 66.667 16.00 7.51 42.89 5.03
3330 3760 2.329690 CGTCAGGAGATCGCCTCG 59.670 66.667 16.00 13.27 42.89 4.63
3331 3761 2.725008 CCGTCAGGAGATCGCCTC 59.275 66.667 16.00 4.55 41.02 4.70
3332 3762 3.532155 GCCGTCAGGAGATCGCCT 61.532 66.667 12.90 12.90 41.02 5.52
3333 3763 4.933064 CGCCGTCAGGAGATCGCC 62.933 72.222 7.52 7.52 39.96 5.54
3335 3765 2.450960 CTAGCGCCGTCAGGAGATCG 62.451 65.000 2.29 0.00 39.96 3.69
3336 3766 1.284408 CTAGCGCCGTCAGGAGATC 59.716 63.158 2.29 0.00 39.96 2.75
3337 3767 2.196925 CCTAGCGCCGTCAGGAGAT 61.197 63.158 2.29 0.00 39.96 2.75
3338 3768 2.829003 CCTAGCGCCGTCAGGAGA 60.829 66.667 2.29 0.00 39.96 3.71
3339 3769 3.905678 CCCTAGCGCCGTCAGGAG 61.906 72.222 14.57 3.71 41.02 3.69
3340 3770 2.842188 TAACCCTAGCGCCGTCAGGA 62.842 60.000 14.57 0.00 41.02 3.86
3341 3771 2.351336 CTAACCCTAGCGCCGTCAGG 62.351 65.000 2.29 5.83 41.62 3.86
3342 3772 1.065928 CTAACCCTAGCGCCGTCAG 59.934 63.158 2.29 0.00 0.00 3.51
3343 3773 2.420568 CCTAACCCTAGCGCCGTCA 61.421 63.158 2.29 0.00 0.00 4.35
3344 3774 2.416260 CCTAACCCTAGCGCCGTC 59.584 66.667 2.29 0.00 0.00 4.79
3345 3775 3.152400 CCCTAACCCTAGCGCCGT 61.152 66.667 2.29 0.00 0.00 5.68
3346 3776 2.248086 AAACCCTAACCCTAGCGCCG 62.248 60.000 2.29 0.00 0.00 6.46
3347 3777 0.034767 AAAACCCTAACCCTAGCGCC 60.035 55.000 2.29 0.00 0.00 6.53
3348 3778 1.092348 CAAAACCCTAACCCTAGCGC 58.908 55.000 0.00 0.00 0.00 5.92
3349 3779 2.027469 AGTCAAAACCCTAACCCTAGCG 60.027 50.000 0.00 0.00 0.00 4.26
3350 3780 3.715638 AGTCAAAACCCTAACCCTAGC 57.284 47.619 0.00 0.00 0.00 3.42
3351 3781 4.382362 CCGTAGTCAAAACCCTAACCCTAG 60.382 50.000 0.00 0.00 0.00 3.02
3352 3782 3.515104 CCGTAGTCAAAACCCTAACCCTA 59.485 47.826 0.00 0.00 0.00 3.53
3353 3783 2.303890 CCGTAGTCAAAACCCTAACCCT 59.696 50.000 0.00 0.00 0.00 4.34
3354 3784 2.616256 CCCGTAGTCAAAACCCTAACCC 60.616 54.545 0.00 0.00 0.00 4.11
3355 3785 2.616256 CCCCGTAGTCAAAACCCTAACC 60.616 54.545 0.00 0.00 0.00 2.85
3356 3786 2.616256 CCCCCGTAGTCAAAACCCTAAC 60.616 54.545 0.00 0.00 0.00 2.34
3357 3787 1.629861 CCCCCGTAGTCAAAACCCTAA 59.370 52.381 0.00 0.00 0.00 2.69
3358 3788 1.278537 CCCCCGTAGTCAAAACCCTA 58.721 55.000 0.00 0.00 0.00 3.53
3359 3789 0.769386 ACCCCCGTAGTCAAAACCCT 60.769 55.000 0.00 0.00 0.00 4.34
3360 3790 0.607217 CACCCCCGTAGTCAAAACCC 60.607 60.000 0.00 0.00 0.00 4.11
3361 3791 0.607217 CCACCCCCGTAGTCAAAACC 60.607 60.000 0.00 0.00 0.00 3.27
3362 3792 0.109153 ACCACCCCCGTAGTCAAAAC 59.891 55.000 0.00 0.00 0.00 2.43
3363 3793 0.108963 CACCACCCCCGTAGTCAAAA 59.891 55.000 0.00 0.00 0.00 2.44
3364 3794 0.763604 TCACCACCCCCGTAGTCAAA 60.764 55.000 0.00 0.00 0.00 2.69
3365 3795 1.152290 TCACCACCCCCGTAGTCAA 60.152 57.895 0.00 0.00 0.00 3.18
3366 3796 1.608336 CTCACCACCCCCGTAGTCA 60.608 63.158 0.00 0.00 0.00 3.41
3367 3797 0.686769 ATCTCACCACCCCCGTAGTC 60.687 60.000 0.00 0.00 0.00 2.59
3368 3798 0.252558 AATCTCACCACCCCCGTAGT 60.253 55.000 0.00 0.00 0.00 2.73
3369 3799 1.411612 GTAATCTCACCACCCCCGTAG 59.588 57.143 0.00 0.00 0.00 3.51
3370 3800 1.488390 GTAATCTCACCACCCCCGTA 58.512 55.000 0.00 0.00 0.00 4.02
3371 3801 1.610554 CGTAATCTCACCACCCCCGT 61.611 60.000 0.00 0.00 0.00 5.28
3372 3802 1.143183 CGTAATCTCACCACCCCCG 59.857 63.158 0.00 0.00 0.00 5.73
3373 3803 1.269703 ACCGTAATCTCACCACCCCC 61.270 60.000 0.00 0.00 0.00 5.40
3374 3804 0.107848 CACCGTAATCTCACCACCCC 60.108 60.000 0.00 0.00 0.00 4.95
3375 3805 0.107848 CCACCGTAATCTCACCACCC 60.108 60.000 0.00 0.00 0.00 4.61
3376 3806 0.611714 ACCACCGTAATCTCACCACC 59.388 55.000 0.00 0.00 0.00 4.61
3377 3807 1.001633 ACACCACCGTAATCTCACCAC 59.998 52.381 0.00 0.00 0.00 4.16
3378 3808 1.274167 GACACCACCGTAATCTCACCA 59.726 52.381 0.00 0.00 0.00 4.17
3379 3809 1.549170 AGACACCACCGTAATCTCACC 59.451 52.381 0.00 0.00 0.00 4.02
3380 3810 2.607187 CAGACACCACCGTAATCTCAC 58.393 52.381 0.00 0.00 0.00 3.51
3381 3811 1.548719 CCAGACACCACCGTAATCTCA 59.451 52.381 0.00 0.00 0.00 3.27
3382 3812 1.134788 CCCAGACACCACCGTAATCTC 60.135 57.143 0.00 0.00 0.00 2.75
3383 3813 0.902531 CCCAGACACCACCGTAATCT 59.097 55.000 0.00 0.00 0.00 2.40
3384 3814 0.107848 CCCCAGACACCACCGTAATC 60.108 60.000 0.00 0.00 0.00 1.75
3385 3815 1.988015 CCCCAGACACCACCGTAAT 59.012 57.895 0.00 0.00 0.00 1.89
3386 3816 2.886134 GCCCCAGACACCACCGTAA 61.886 63.158 0.00 0.00 0.00 3.18
3387 3817 3.315949 GCCCCAGACACCACCGTA 61.316 66.667 0.00 0.00 0.00 4.02
3414 3844 1.674980 AGTCCGTGTCGAGGGAGAC 60.675 63.158 0.26 0.00 36.80 3.36
3415 3845 1.674651 CAGTCCGTGTCGAGGGAGA 60.675 63.158 0.26 0.00 36.80 3.71
3416 3846 2.701780 CCAGTCCGTGTCGAGGGAG 61.702 68.421 0.26 0.00 36.80 4.30
3417 3847 2.675423 CCAGTCCGTGTCGAGGGA 60.675 66.667 0.00 0.00 33.58 4.20
3418 3848 2.989824 ACCAGTCCGTGTCGAGGG 60.990 66.667 0.00 0.00 0.00 4.30
3419 3849 1.239296 TACACCAGTCCGTGTCGAGG 61.239 60.000 0.00 0.00 43.50 4.63
3420 3850 0.168348 CTACACCAGTCCGTGTCGAG 59.832 60.000 0.00 0.00 43.50 4.04
3421 3851 1.859427 GCTACACCAGTCCGTGTCGA 61.859 60.000 0.00 0.00 43.50 4.20
3422 3852 1.443872 GCTACACCAGTCCGTGTCG 60.444 63.158 0.00 0.00 43.50 4.35
3423 3853 1.080025 GGCTACACCAGTCCGTGTC 60.080 63.158 0.00 0.00 43.50 3.67
3425 3855 1.215647 GAGGCTACACCAGTCCGTG 59.784 63.158 0.00 0.00 43.14 4.94
3426 3856 1.982938 GGAGGCTACACCAGTCCGT 60.983 63.158 0.00 0.00 43.14 4.69
3427 3857 2.722201 GGGAGGCTACACCAGTCCG 61.722 68.421 0.00 0.00 43.14 4.79
3428 3858 1.306226 AGGGAGGCTACACCAGTCC 60.306 63.158 0.00 0.00 43.14 3.85
3429 3859 1.331399 GGAGGGAGGCTACACCAGTC 61.331 65.000 0.00 0.00 43.14 3.51
3430 3860 1.306226 GGAGGGAGGCTACACCAGT 60.306 63.158 0.00 0.00 43.14 4.00
3431 3861 1.002274 AGGAGGGAGGCTACACCAG 59.998 63.158 13.34 0.00 43.14 4.00
3432 3862 1.001760 GAGGAGGGAGGCTACACCA 59.998 63.158 13.34 0.00 43.14 4.17
3433 3863 1.762858 GGAGGAGGGAGGCTACACC 60.763 68.421 0.00 1.03 39.61 4.16
3434 3864 1.001760 TGGAGGAGGGAGGCTACAC 59.998 63.158 0.00 0.00 0.00 2.90
3435 3865 1.001760 GTGGAGGAGGGAGGCTACA 59.998 63.158 0.00 0.00 0.00 2.74
3436 3866 2.128507 CGTGGAGGAGGGAGGCTAC 61.129 68.421 0.00 0.00 0.00 3.58
3437 3867 2.279073 CGTGGAGGAGGGAGGCTA 59.721 66.667 0.00 0.00 0.00 3.93
3438 3868 4.787280 CCGTGGAGGAGGGAGGCT 62.787 72.222 0.00 0.00 45.00 4.58
3440 3870 3.077556 CACCGTGGAGGAGGGAGG 61.078 72.222 0.00 0.00 45.00 4.30
3441 3871 3.775654 GCACCGTGGAGGAGGGAG 61.776 72.222 0.00 0.00 45.00 4.30
3458 3888 4.161295 TTCTCCGCCATGGCTCCG 62.161 66.667 33.07 20.20 39.32 4.63
3459 3889 2.203126 CTTCTCCGCCATGGCTCC 60.203 66.667 33.07 6.46 39.32 4.70
3460 3890 2.203126 CCTTCTCCGCCATGGCTC 60.203 66.667 33.07 7.26 39.32 4.70
3461 3891 4.496336 GCCTTCTCCGCCATGGCT 62.496 66.667 33.07 0.00 40.36 4.75
3463 3893 3.466791 ATCGCCTTCTCCGCCATGG 62.467 63.158 7.63 7.63 40.09 3.66
3464 3894 2.109799 ATCGCCTTCTCCGCCATG 59.890 61.111 0.00 0.00 0.00 3.66
3465 3895 2.109799 CATCGCCTTCTCCGCCAT 59.890 61.111 0.00 0.00 0.00 4.40
3466 3896 4.161295 CCATCGCCTTCTCCGCCA 62.161 66.667 0.00 0.00 0.00 5.69
3467 3897 4.162690 ACCATCGCCTTCTCCGCC 62.163 66.667 0.00 0.00 0.00 6.13
3468 3898 2.892425 CACCATCGCCTTCTCCGC 60.892 66.667 0.00 0.00 0.00 5.54
3469 3899 2.892425 GCACCATCGCCTTCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
3470 3900 0.749454 ATTGCACCATCGCCTTCTCC 60.749 55.000 0.00 0.00 0.00 3.71
3471 3901 0.659957 GATTGCACCATCGCCTTCTC 59.340 55.000 0.00 0.00 0.00 2.87
3472 3902 0.254178 AGATTGCACCATCGCCTTCT 59.746 50.000 0.00 0.00 0.00 2.85
3473 3903 0.379669 CAGATTGCACCATCGCCTTC 59.620 55.000 0.00 0.00 0.00 3.46
3474 3904 1.660560 GCAGATTGCACCATCGCCTT 61.661 55.000 0.00 0.00 44.26 4.35
3475 3905 2.117156 GCAGATTGCACCATCGCCT 61.117 57.895 0.00 0.00 44.26 5.52
3476 3906 2.410469 GCAGATTGCACCATCGCC 59.590 61.111 0.00 0.00 44.26 5.54
3477 3907 2.023741 CGCAGATTGCACCATCGC 59.976 61.111 1.69 0.00 45.36 4.58
3478 3908 1.769098 CTCCGCAGATTGCACCATCG 61.769 60.000 1.69 0.00 45.36 3.84
3479 3909 0.462581 TCTCCGCAGATTGCACCATC 60.463 55.000 1.69 0.00 45.36 3.51
3480 3910 0.182061 ATCTCCGCAGATTGCACCAT 59.818 50.000 1.69 0.00 45.36 3.55
3481 3911 0.462581 GATCTCCGCAGATTGCACCA 60.463 55.000 0.00 0.00 45.36 4.17
3482 3912 1.162800 GGATCTCCGCAGATTGCACC 61.163 60.000 0.00 0.00 45.36 5.01
3483 3913 1.162800 GGGATCTCCGCAGATTGCAC 61.163 60.000 0.00 0.00 45.36 4.57
3484 3914 1.146930 GGGATCTCCGCAGATTGCA 59.853 57.895 0.00 0.00 45.36 4.08
3485 3915 4.055654 GGGATCTCCGCAGATTGC 57.944 61.111 0.00 0.00 39.71 3.56
3494 3924 1.521681 CTTTGTCGCCGGGATCTCC 60.522 63.158 2.18 0.00 0.00 3.71
3495 3925 1.521681 CCTTTGTCGCCGGGATCTC 60.522 63.158 2.18 0.00 0.00 2.75
3496 3926 2.584608 CCTTTGTCGCCGGGATCT 59.415 61.111 2.18 0.00 0.00 2.75
3497 3927 3.202706 GCCTTTGTCGCCGGGATC 61.203 66.667 2.18 0.00 0.00 3.36
3498 3928 3.561120 TTGCCTTTGTCGCCGGGAT 62.561 57.895 2.18 0.00 0.00 3.85
3499 3929 3.776347 TTTGCCTTTGTCGCCGGGA 62.776 57.895 2.18 0.00 0.00 5.14
3500 3930 3.291383 TTTGCCTTTGTCGCCGGG 61.291 61.111 2.18 0.00 0.00 5.73
3501 3931 2.050442 GTTTGCCTTTGTCGCCGG 60.050 61.111 0.00 0.00 0.00 6.13
3502 3932 2.050442 GGTTTGCCTTTGTCGCCG 60.050 61.111 0.00 0.00 0.00 6.46
3503 3933 2.338620 GGGTTTGCCTTTGTCGCC 59.661 61.111 0.00 0.00 34.45 5.54
3504 3934 2.050442 CGGGTTTGCCTTTGTCGC 60.050 61.111 0.00 0.00 34.45 5.19
3505 3935 1.281656 GTCGGGTTTGCCTTTGTCG 59.718 57.895 0.00 0.00 34.45 4.35
3506 3936 1.281656 CGTCGGGTTTGCCTTTGTC 59.718 57.895 0.00 0.00 34.45 3.18
3507 3937 2.190841 CCGTCGGGTTTGCCTTTGT 61.191 57.895 2.34 0.00 34.45 2.83
3508 3938 2.642700 CCGTCGGGTTTGCCTTTG 59.357 61.111 2.34 0.00 34.45 2.77
3509 3939 3.292159 GCCGTCGGGTTTGCCTTT 61.292 61.111 14.38 0.00 34.97 3.11
3514 3944 2.968156 TTGTCGCCGTCGGGTTTG 60.968 61.111 14.38 0.00 36.13 2.93
3515 3945 2.968697 GTTGTCGCCGTCGGGTTT 60.969 61.111 14.38 0.00 36.13 3.27
3526 3956 2.992607 TTTTCCCGGGGTCGTTGTCG 62.993 60.000 23.50 0.00 38.55 4.35
3527 3957 1.227913 TTTTCCCGGGGTCGTTGTC 60.228 57.895 23.50 0.00 33.95 3.18
3528 3958 1.228033 CTTTTCCCGGGGTCGTTGT 60.228 57.895 23.50 0.00 33.95 3.32
3529 3959 2.622962 GCTTTTCCCGGGGTCGTTG 61.623 63.158 23.50 7.69 33.95 4.10
3530 3960 2.281970 GCTTTTCCCGGGGTCGTT 60.282 61.111 23.50 0.00 33.95 3.85
3531 3961 3.122727 TTGCTTTTCCCGGGGTCGT 62.123 57.895 23.50 0.00 33.95 4.34
3532 3962 2.281900 TTGCTTTTCCCGGGGTCG 60.282 61.111 23.50 8.17 0.00 4.79
3533 3963 2.622962 CGTTGCTTTTCCCGGGGTC 61.623 63.158 23.50 6.03 0.00 4.46
3534 3964 2.596338 CGTTGCTTTTCCCGGGGT 60.596 61.111 23.50 0.00 0.00 4.95
3535 3965 2.281900 TCGTTGCTTTTCCCGGGG 60.282 61.111 23.50 6.77 0.00 5.73
3536 3966 1.599797 ACTCGTTGCTTTTCCCGGG 60.600 57.895 16.85 16.85 0.00 5.73
3537 3967 1.574428 CACTCGTTGCTTTTCCCGG 59.426 57.895 0.00 0.00 0.00 5.73
3538 3968 1.574428 CCACTCGTTGCTTTTCCCG 59.426 57.895 0.00 0.00 0.00 5.14
3539 3969 1.524008 CCCCACTCGTTGCTTTTCCC 61.524 60.000 0.00 0.00 0.00 3.97
3540 3970 1.524008 CCCCCACTCGTTGCTTTTCC 61.524 60.000 0.00 0.00 0.00 3.13
3541 3971 1.956802 CCCCCACTCGTTGCTTTTC 59.043 57.895 0.00 0.00 0.00 2.29
3542 3972 2.200337 GCCCCCACTCGTTGCTTTT 61.200 57.895 0.00 0.00 0.00 2.27
3543 3973 2.597510 GCCCCCACTCGTTGCTTT 60.598 61.111 0.00 0.00 0.00 3.51
3544 3974 3.553095 GAGCCCCCACTCGTTGCTT 62.553 63.158 0.00 0.00 31.23 3.91
3545 3975 4.021925 GAGCCCCCACTCGTTGCT 62.022 66.667 0.00 0.00 34.40 3.91
3546 3976 3.553095 AAGAGCCCCCACTCGTTGC 62.553 63.158 0.00 0.00 41.77 4.17
3547 3977 1.376037 GAAGAGCCCCCACTCGTTG 60.376 63.158 0.00 0.00 41.77 4.10
3548 3978 0.252103 TAGAAGAGCCCCCACTCGTT 60.252 55.000 0.00 0.00 41.77 3.85
3549 3979 0.684805 CTAGAAGAGCCCCCACTCGT 60.685 60.000 0.00 0.00 41.77 4.18
3550 3980 2.022240 GCTAGAAGAGCCCCCACTCG 62.022 65.000 0.00 0.00 46.41 4.18
3551 3981 1.826709 GCTAGAAGAGCCCCCACTC 59.173 63.158 0.00 0.00 46.41 3.51
3552 3982 4.058434 GCTAGAAGAGCCCCCACT 57.942 61.111 0.00 0.00 46.41 4.00
3560 3990 1.611491 GTGATCGGGGAGCTAGAAGAG 59.389 57.143 0.00 0.00 0.00 2.85
3561 3991 1.063942 TGTGATCGGGGAGCTAGAAGA 60.064 52.381 0.00 0.00 0.00 2.87
3562 3992 1.403814 TGTGATCGGGGAGCTAGAAG 58.596 55.000 0.00 0.00 0.00 2.85
3563 3993 1.688735 CATGTGATCGGGGAGCTAGAA 59.311 52.381 0.00 0.00 0.00 2.10
3564 3994 1.332195 CATGTGATCGGGGAGCTAGA 58.668 55.000 0.00 0.00 0.00 2.43
3565 3995 0.320247 GCATGTGATCGGGGAGCTAG 60.320 60.000 0.00 0.00 0.00 3.42
3566 3996 1.048160 TGCATGTGATCGGGGAGCTA 61.048 55.000 0.00 0.00 0.00 3.32
3567 3997 1.913951 TTGCATGTGATCGGGGAGCT 61.914 55.000 0.00 0.00 0.00 4.09
3568 3998 1.442526 CTTGCATGTGATCGGGGAGC 61.443 60.000 0.00 0.00 0.00 4.70
3569 3999 0.178767 TCTTGCATGTGATCGGGGAG 59.821 55.000 0.00 0.00 0.00 4.30
3570 4000 0.107703 GTCTTGCATGTGATCGGGGA 60.108 55.000 0.00 0.00 0.00 4.81
3571 4001 1.431488 CGTCTTGCATGTGATCGGGG 61.431 60.000 0.00 0.00 0.00 5.73
3572 4002 2.009108 CGTCTTGCATGTGATCGGG 58.991 57.895 0.00 0.00 0.00 5.14
3573 4003 1.349627 GCGTCTTGCATGTGATCGG 59.650 57.895 0.00 0.00 45.45 4.18
3574 4004 4.961622 GCGTCTTGCATGTGATCG 57.038 55.556 0.00 3.04 45.45 3.69
3583 4013 0.530870 GGTAGGATCTGGCGTCTTGC 60.531 60.000 0.00 0.00 45.38 4.01
3584 4014 0.249073 CGGTAGGATCTGGCGTCTTG 60.249 60.000 0.00 0.00 0.00 3.02
3585 4015 2.017559 GCGGTAGGATCTGGCGTCTT 62.018 60.000 0.00 0.00 0.00 3.01
3586 4016 2.491022 GCGGTAGGATCTGGCGTCT 61.491 63.158 0.00 0.00 0.00 4.18
3587 4017 2.027751 GCGGTAGGATCTGGCGTC 59.972 66.667 0.00 0.00 0.00 5.19
3588 4018 2.298158 CTTGCGGTAGGATCTGGCGT 62.298 60.000 0.00 0.00 0.00 5.68
3589 4019 1.592669 CTTGCGGTAGGATCTGGCG 60.593 63.158 0.00 0.00 0.00 5.69
3590 4020 1.889573 GCTTGCGGTAGGATCTGGC 60.890 63.158 0.00 0.00 0.00 4.85
3591 4021 1.227674 GGCTTGCGGTAGGATCTGG 60.228 63.158 0.00 0.00 0.00 3.86
3592 4022 0.249657 GAGGCTTGCGGTAGGATCTG 60.250 60.000 0.00 0.00 0.00 2.90
3593 4023 0.397816 AGAGGCTTGCGGTAGGATCT 60.398 55.000 0.00 0.00 0.00 2.75
3594 4024 0.032815 GAGAGGCTTGCGGTAGGATC 59.967 60.000 0.00 0.00 0.00 3.36
3595 4025 0.687757 TGAGAGGCTTGCGGTAGGAT 60.688 55.000 0.00 0.00 0.00 3.24
3596 4026 1.304962 TGAGAGGCTTGCGGTAGGA 60.305 57.895 0.00 0.00 0.00 2.94
3597 4027 1.142748 CTGAGAGGCTTGCGGTAGG 59.857 63.158 0.00 0.00 0.00 3.18
3598 4028 1.520342 GCTGAGAGGCTTGCGGTAG 60.520 63.158 0.00 0.00 0.00 3.18
3599 4029 0.683179 TAGCTGAGAGGCTTGCGGTA 60.683 55.000 0.00 0.00 42.97 4.02
3600 4030 1.954362 CTAGCTGAGAGGCTTGCGGT 61.954 60.000 0.00 0.00 42.97 5.68
3601 4031 1.227205 CTAGCTGAGAGGCTTGCGG 60.227 63.158 0.00 0.00 42.97 5.69
3602 4032 1.227205 CCTAGCTGAGAGGCTTGCG 60.227 63.158 0.00 0.00 42.97 4.85
3603 4033 0.758123 ATCCTAGCTGAGAGGCTTGC 59.242 55.000 0.00 0.00 42.97 4.01
3604 4034 1.070445 CCATCCTAGCTGAGAGGCTTG 59.930 57.143 0.00 0.00 42.97 4.01
3605 4035 1.422531 CCATCCTAGCTGAGAGGCTT 58.577 55.000 0.00 0.00 42.97 4.35
3606 4036 0.471591 CCCATCCTAGCTGAGAGGCT 60.472 60.000 0.00 0.00 45.29 4.58
3607 4037 0.470833 TCCCATCCTAGCTGAGAGGC 60.471 60.000 0.00 0.00 33.73 4.70
3608 4038 1.631405 CTCCCATCCTAGCTGAGAGG 58.369 60.000 0.00 0.00 35.17 3.69
3609 4039 1.631405 CCTCCCATCCTAGCTGAGAG 58.369 60.000 0.00 0.00 0.00 3.20
3610 4040 0.189574 CCCTCCCATCCTAGCTGAGA 59.810 60.000 0.00 0.00 0.00 3.27
3611 4041 0.189574 TCCCTCCCATCCTAGCTGAG 59.810 60.000 0.00 0.00 0.00 3.35
3612 4042 0.870313 ATCCCTCCCATCCTAGCTGA 59.130 55.000 0.00 0.00 0.00 4.26
3613 4043 0.982704 CATCCCTCCCATCCTAGCTG 59.017 60.000 0.00 0.00 0.00 4.24
3614 4044 0.178879 CCATCCCTCCCATCCTAGCT 60.179 60.000 0.00 0.00 0.00 3.32
3615 4045 0.474660 ACCATCCCTCCCATCCTAGC 60.475 60.000 0.00 0.00 0.00 3.42
3616 4046 2.124560 AACCATCCCTCCCATCCTAG 57.875 55.000 0.00 0.00 0.00 3.02
3617 4047 2.513738 CAAAACCATCCCTCCCATCCTA 59.486 50.000 0.00 0.00 0.00 2.94
3618 4048 1.288932 CAAAACCATCCCTCCCATCCT 59.711 52.381 0.00 0.00 0.00 3.24
3619 4049 1.780503 CAAAACCATCCCTCCCATCC 58.219 55.000 0.00 0.00 0.00 3.51
3620 4050 1.114627 GCAAAACCATCCCTCCCATC 58.885 55.000 0.00 0.00 0.00 3.51
3621 4051 0.712380 AGCAAAACCATCCCTCCCAT 59.288 50.000 0.00 0.00 0.00 4.00
3622 4052 0.251742 CAGCAAAACCATCCCTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
3623 4053 0.972471 CCAGCAAAACCATCCCTCCC 60.972 60.000 0.00 0.00 0.00 4.30
3624 4054 0.039618 TCCAGCAAAACCATCCCTCC 59.960 55.000 0.00 0.00 0.00 4.30
3625 4055 2.149973 ATCCAGCAAAACCATCCCTC 57.850 50.000 0.00 0.00 0.00 4.30
3626 4056 3.628257 CCTTATCCAGCAAAACCATCCCT 60.628 47.826 0.00 0.00 0.00 4.20
3627 4057 2.695147 CCTTATCCAGCAAAACCATCCC 59.305 50.000 0.00 0.00 0.00 3.85
3628 4058 3.631250 TCCTTATCCAGCAAAACCATCC 58.369 45.455 0.00 0.00 0.00 3.51
3629 4059 3.633986 CCTCCTTATCCAGCAAAACCATC 59.366 47.826 0.00 0.00 0.00 3.51
3630 4060 3.635591 CCTCCTTATCCAGCAAAACCAT 58.364 45.455 0.00 0.00 0.00 3.55
3631 4061 2.883888 GCCTCCTTATCCAGCAAAACCA 60.884 50.000 0.00 0.00 0.00 3.67
3632 4062 1.751351 GCCTCCTTATCCAGCAAAACC 59.249 52.381 0.00 0.00 0.00 3.27
3633 4063 1.401905 CGCCTCCTTATCCAGCAAAAC 59.598 52.381 0.00 0.00 0.00 2.43
3634 4064 1.681780 CCGCCTCCTTATCCAGCAAAA 60.682 52.381 0.00 0.00 0.00 2.44
3635 4065 0.107214 CCGCCTCCTTATCCAGCAAA 60.107 55.000 0.00 0.00 0.00 3.68
3636 4066 0.980754 TCCGCCTCCTTATCCAGCAA 60.981 55.000 0.00 0.00 0.00 3.91
3637 4067 1.382557 TCCGCCTCCTTATCCAGCA 60.383 57.895 0.00 0.00 0.00 4.41
3638 4068 1.369321 CTCCGCCTCCTTATCCAGC 59.631 63.158 0.00 0.00 0.00 4.85
3639 4069 1.476007 CCCTCCGCCTCCTTATCCAG 61.476 65.000 0.00 0.00 0.00 3.86
3640 4070 1.459539 CCCTCCGCCTCCTTATCCA 60.460 63.158 0.00 0.00 0.00 3.41
3641 4071 1.054978 AACCCTCCGCCTCCTTATCC 61.055 60.000 0.00 0.00 0.00 2.59
3642 4072 0.837940 AAACCCTCCGCCTCCTTATC 59.162 55.000 0.00 0.00 0.00 1.75
3643 4073 0.837940 GAAACCCTCCGCCTCCTTAT 59.162 55.000 0.00 0.00 0.00 1.73
3644 4074 1.610554 CGAAACCCTCCGCCTCCTTA 61.611 60.000 0.00 0.00 0.00 2.69
3645 4075 2.955881 CGAAACCCTCCGCCTCCTT 61.956 63.158 0.00 0.00 0.00 3.36
3646 4076 3.391382 CGAAACCCTCCGCCTCCT 61.391 66.667 0.00 0.00 0.00 3.69
3647 4077 3.660732 GACGAAACCCTCCGCCTCC 62.661 68.421 0.00 0.00 0.00 4.30
3648 4078 2.125633 GACGAAACCCTCCGCCTC 60.126 66.667 0.00 0.00 0.00 4.70
3649 4079 2.168666 GAAGACGAAACCCTCCGCCT 62.169 60.000 0.00 0.00 0.00 5.52
3650 4080 1.740664 GAAGACGAAACCCTCCGCC 60.741 63.158 0.00 0.00 0.00 6.13
3651 4081 2.092882 CGAAGACGAAACCCTCCGC 61.093 63.158 0.00 0.00 42.66 5.54
3652 4082 1.582968 TCGAAGACGAAACCCTCCG 59.417 57.895 0.00 0.00 45.74 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.