Multiple sequence alignment - TraesCS2D01G397100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G397100 chr2D 100.000 2202 0 0 1 2202 508094161 508091960 0.000000e+00 4067
1 TraesCS2D01G397100 chr2D 100.000 197 0 0 2401 2597 508091761 508091565 5.280000e-97 364
2 TraesCS2D01G397100 chr2D 88.929 280 23 5 180 455 204409333 204409608 3.200000e-89 339
3 TraesCS2D01G397100 chr2D 91.282 195 13 4 180 373 155625145 155624954 1.980000e-66 263
4 TraesCS2D01G397100 chr2B 97.241 1667 29 10 541 2202 597225820 597224166 0.000000e+00 2808
5 TraesCS2D01G397100 chr2B 93.878 196 7 3 2401 2596 597224174 597223984 9.090000e-75 291
6 TraesCS2D01G397100 chr2B 85.766 274 32 5 180 450 361748488 361748219 1.520000e-72 283
7 TraesCS2D01G397100 chr2A 90.132 1672 84 43 586 2202 652595241 652593596 0.000000e+00 2098
8 TraesCS2D01G397100 chr5B 85.881 1027 97 29 838 1833 570380634 570379625 0.000000e+00 1050
9 TraesCS2D01G397100 chr5D 89.068 805 68 11 836 1628 463635602 463634806 0.000000e+00 981
10 TraesCS2D01G397100 chr5D 86.364 132 12 3 1706 1833 463634790 463634661 3.480000e-29 139
11 TraesCS2D01G397100 chr5A 87.366 839 77 11 853 1688 583687196 583686384 0.000000e+00 935
12 TraesCS2D01G397100 chr3B 89.493 276 23 4 180 452 544928797 544928525 6.880000e-91 344
13 TraesCS2D01G397100 chr3B 88.768 276 25 4 180 452 544836426 544836154 1.490000e-87 333
14 TraesCS2D01G397100 chr3D 89.493 276 21 5 180 452 418444278 418444008 2.470000e-90 342
15 TraesCS2D01G397100 chr3D 88.768 276 25 4 180 452 418561705 418561433 1.490000e-87 333
16 TraesCS2D01G397100 chr3D 88.824 170 18 1 13 181 149291966 149291797 9.420000e-50 207
17 TraesCS2D01G397100 chr7D 86.861 274 23 10 180 450 205555542 205555805 7.030000e-76 294
18 TraesCS2D01G397100 chr3A 86.232 276 31 5 181 452 532627821 532628093 2.530000e-75 292
19 TraesCS2D01G397100 chr7A 84.706 170 25 1 13 181 686222968 686223137 4.440000e-38 169
20 TraesCS2D01G397100 chr1D 82.703 185 28 3 1 181 478883997 478883813 7.440000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G397100 chr2D 508091565 508094161 2596 True 2215.5 4067 100.0000 1 2597 2 chr2D.!!$R2 2596
1 TraesCS2D01G397100 chr2B 597223984 597225820 1836 True 1549.5 2808 95.5595 541 2596 2 chr2B.!!$R2 2055
2 TraesCS2D01G397100 chr2A 652593596 652595241 1645 True 2098.0 2098 90.1320 586 2202 1 chr2A.!!$R1 1616
3 TraesCS2D01G397100 chr5B 570379625 570380634 1009 True 1050.0 1050 85.8810 838 1833 1 chr5B.!!$R1 995
4 TraesCS2D01G397100 chr5D 463634661 463635602 941 True 560.0 981 87.7160 836 1833 2 chr5D.!!$R1 997
5 TraesCS2D01G397100 chr5A 583686384 583687196 812 True 935.0 935 87.3660 853 1688 1 chr5A.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.104304 AGCCGGCTGTTAATCTACCG 59.896 55.0 32.33 0.0 43.44 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1799 2.713967 GGTACGCGCCTCCTTACCA 61.714 63.158 5.73 0.0 35.08 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.659652 GTATTACTTCATTAGATGGCTCACC 57.340 40.000 0.00 0.00 0.00 4.02
25 26 5.957771 TTACTTCATTAGATGGCTCACCT 57.042 39.130 0.00 0.00 36.63 4.00
26 27 4.851639 ACTTCATTAGATGGCTCACCTT 57.148 40.909 0.00 0.00 36.63 3.50
27 28 5.957771 ACTTCATTAGATGGCTCACCTTA 57.042 39.130 0.00 0.00 36.63 2.69
28 29 5.675538 ACTTCATTAGATGGCTCACCTTAC 58.324 41.667 0.00 0.00 36.63 2.34
29 30 5.189736 ACTTCATTAGATGGCTCACCTTACA 59.810 40.000 0.00 0.00 36.63 2.41
30 31 5.023533 TCATTAGATGGCTCACCTTACAC 57.976 43.478 0.00 0.00 36.63 2.90
31 32 4.716784 TCATTAGATGGCTCACCTTACACT 59.283 41.667 0.00 0.00 36.63 3.55
32 33 4.737855 TTAGATGGCTCACCTTACACTC 57.262 45.455 0.00 0.00 36.63 3.51
33 34 2.826488 AGATGGCTCACCTTACACTCT 58.174 47.619 0.00 0.00 36.63 3.24
34 35 2.763448 AGATGGCTCACCTTACACTCTC 59.237 50.000 0.00 0.00 36.63 3.20
35 36 2.009681 TGGCTCACCTTACACTCTCA 57.990 50.000 0.00 0.00 36.63 3.27
36 37 1.618837 TGGCTCACCTTACACTCTCAC 59.381 52.381 0.00 0.00 36.63 3.51
37 38 1.618837 GGCTCACCTTACACTCTCACA 59.381 52.381 0.00 0.00 0.00 3.58
38 39 2.234908 GGCTCACCTTACACTCTCACAT 59.765 50.000 0.00 0.00 0.00 3.21
39 40 3.307059 GGCTCACCTTACACTCTCACATT 60.307 47.826 0.00 0.00 0.00 2.71
40 41 3.681897 GCTCACCTTACACTCTCACATTG 59.318 47.826 0.00 0.00 0.00 2.82
41 42 4.800914 GCTCACCTTACACTCTCACATTGT 60.801 45.833 0.00 0.00 0.00 2.71
42 43 5.290493 TCACCTTACACTCTCACATTGTT 57.710 39.130 0.00 0.00 0.00 2.83
43 44 5.680619 TCACCTTACACTCTCACATTGTTT 58.319 37.500 0.00 0.00 0.00 2.83
44 45 5.758296 TCACCTTACACTCTCACATTGTTTC 59.242 40.000 0.00 0.00 0.00 2.78
45 46 5.760253 CACCTTACACTCTCACATTGTTTCT 59.240 40.000 0.00 0.00 0.00 2.52
46 47 6.260936 CACCTTACACTCTCACATTGTTTCTT 59.739 38.462 0.00 0.00 0.00 2.52
47 48 6.260936 ACCTTACACTCTCACATTGTTTCTTG 59.739 38.462 0.00 0.00 0.00 3.02
48 49 6.293626 CCTTACACTCTCACATTGTTTCTTGG 60.294 42.308 0.00 0.00 0.00 3.61
49 50 4.780815 ACACTCTCACATTGTTTCTTGGA 58.219 39.130 0.00 0.00 0.00 3.53
50 51 4.818546 ACACTCTCACATTGTTTCTTGGAG 59.181 41.667 0.00 0.00 0.00 3.86
51 52 5.059161 CACTCTCACATTGTTTCTTGGAGA 58.941 41.667 0.00 3.22 0.00 3.71
52 53 5.528690 CACTCTCACATTGTTTCTTGGAGAA 59.471 40.000 4.46 0.00 31.28 2.87
53 54 6.038603 CACTCTCACATTGTTTCTTGGAGAAA 59.961 38.462 0.00 0.00 41.51 2.52
54 55 6.261826 ACTCTCACATTGTTTCTTGGAGAAAG 59.738 38.462 3.51 0.00 44.07 2.62
55 56 6.122277 TCTCACATTGTTTCTTGGAGAAAGT 58.878 36.000 3.51 0.00 44.07 2.66
56 57 6.038603 TCTCACATTGTTTCTTGGAGAAAGTG 59.961 38.462 3.51 8.24 44.07 3.16
57 58 4.741676 CACATTGTTTCTTGGAGAAAGTGC 59.258 41.667 3.51 0.00 44.07 4.40
58 59 4.646492 ACATTGTTTCTTGGAGAAAGTGCT 59.354 37.500 3.51 0.00 44.07 4.40
59 60 4.637483 TTGTTTCTTGGAGAAAGTGCTG 57.363 40.909 3.51 0.00 44.07 4.41
60 61 2.358898 TGTTTCTTGGAGAAAGTGCTGC 59.641 45.455 3.51 0.00 44.07 5.25
61 62 2.346766 TTCTTGGAGAAAGTGCTGCA 57.653 45.000 0.00 0.00 37.18 4.41
62 63 1.888215 TCTTGGAGAAAGTGCTGCAG 58.112 50.000 10.11 10.11 37.53 4.41
63 64 0.240411 CTTGGAGAAAGTGCTGCAGC 59.760 55.000 31.89 31.89 37.53 5.25
64 65 1.174712 TTGGAGAAAGTGCTGCAGCC 61.175 55.000 34.64 24.89 37.53 4.85
65 66 2.684843 GGAGAAAGTGCTGCAGCCG 61.685 63.158 34.64 0.75 41.18 5.52
66 67 2.670934 AGAAAGTGCTGCAGCCGG 60.671 61.111 34.64 0.00 41.18 6.13
67 68 4.410743 GAAAGTGCTGCAGCCGGC 62.411 66.667 34.64 21.89 43.83 6.13
68 69 4.962836 AAAGTGCTGCAGCCGGCT 62.963 61.111 34.64 27.08 43.91 5.52
72 73 4.328025 TGCTGCAGCCGGCTGTTA 62.328 61.111 46.58 36.02 45.24 2.41
73 74 3.055719 GCTGCAGCCGGCTGTTAA 61.056 61.111 46.58 33.70 45.24 2.01
74 75 2.409870 GCTGCAGCCGGCTGTTAAT 61.410 57.895 46.58 18.29 45.24 1.40
75 76 1.723870 CTGCAGCCGGCTGTTAATC 59.276 57.895 46.58 33.52 45.24 1.75
76 77 0.745845 CTGCAGCCGGCTGTTAATCT 60.746 55.000 46.58 16.67 45.24 2.40
77 78 0.539518 TGCAGCCGGCTGTTAATCTA 59.460 50.000 46.58 26.11 45.24 1.98
78 79 0.938008 GCAGCCGGCTGTTAATCTAC 59.062 55.000 46.58 29.20 45.24 2.59
79 80 1.583054 CAGCCGGCTGTTAATCTACC 58.417 55.000 42.09 3.28 39.10 3.18
80 81 0.104304 AGCCGGCTGTTAATCTACCG 59.896 55.000 32.33 0.00 43.44 4.02
81 82 0.179092 GCCGGCTGTTAATCTACCGT 60.179 55.000 22.15 0.00 42.29 4.83
82 83 1.849097 CCGGCTGTTAATCTACCGTC 58.151 55.000 0.00 0.00 42.29 4.79
83 84 1.537562 CCGGCTGTTAATCTACCGTCC 60.538 57.143 0.00 0.00 42.29 4.79
84 85 1.135527 CGGCTGTTAATCTACCGTCCA 59.864 52.381 0.00 0.00 39.05 4.02
85 86 2.547826 GGCTGTTAATCTACCGTCCAC 58.452 52.381 0.00 0.00 0.00 4.02
86 87 2.167900 GGCTGTTAATCTACCGTCCACT 59.832 50.000 0.00 0.00 0.00 4.00
87 88 3.369157 GGCTGTTAATCTACCGTCCACTT 60.369 47.826 0.00 0.00 0.00 3.16
88 89 3.617263 GCTGTTAATCTACCGTCCACTTG 59.383 47.826 0.00 0.00 0.00 3.16
89 90 3.592059 TGTTAATCTACCGTCCACTTGC 58.408 45.455 0.00 0.00 0.00 4.01
90 91 2.934553 GTTAATCTACCGTCCACTTGCC 59.065 50.000 0.00 0.00 0.00 4.52
91 92 1.276622 AATCTACCGTCCACTTGCCT 58.723 50.000 0.00 0.00 0.00 4.75
92 93 1.276622 ATCTACCGTCCACTTGCCTT 58.723 50.000 0.00 0.00 0.00 4.35
93 94 0.606604 TCTACCGTCCACTTGCCTTC 59.393 55.000 0.00 0.00 0.00 3.46
94 95 0.608640 CTACCGTCCACTTGCCTTCT 59.391 55.000 0.00 0.00 0.00 2.85
95 96 0.606604 TACCGTCCACTTGCCTTCTC 59.393 55.000 0.00 0.00 0.00 2.87
96 97 1.122019 ACCGTCCACTTGCCTTCTCT 61.122 55.000 0.00 0.00 0.00 3.10
97 98 0.390472 CCGTCCACTTGCCTTCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
98 99 0.605589 CGTCCACTTGCCTTCTCTCT 59.394 55.000 0.00 0.00 0.00 3.10
99 100 1.403514 CGTCCACTTGCCTTCTCTCTC 60.404 57.143 0.00 0.00 0.00 3.20
100 101 1.899142 GTCCACTTGCCTTCTCTCTCT 59.101 52.381 0.00 0.00 0.00 3.10
101 102 2.094234 GTCCACTTGCCTTCTCTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
102 103 2.178580 CCACTTGCCTTCTCTCTCTCT 58.821 52.381 0.00 0.00 0.00 3.10
103 104 2.566724 CCACTTGCCTTCTCTCTCTCTT 59.433 50.000 0.00 0.00 0.00 2.85
104 105 3.368323 CCACTTGCCTTCTCTCTCTCTTC 60.368 52.174 0.00 0.00 0.00 2.87
105 106 3.511146 CACTTGCCTTCTCTCTCTCTTCT 59.489 47.826 0.00 0.00 0.00 2.85
106 107 3.763897 ACTTGCCTTCTCTCTCTCTTCTC 59.236 47.826 0.00 0.00 0.00 2.87
107 108 3.737559 TGCCTTCTCTCTCTCTTCTCT 57.262 47.619 0.00 0.00 0.00 3.10
108 109 3.620488 TGCCTTCTCTCTCTCTTCTCTC 58.380 50.000 0.00 0.00 0.00 3.20
109 110 3.266772 TGCCTTCTCTCTCTCTTCTCTCT 59.733 47.826 0.00 0.00 0.00 3.10
110 111 3.879892 GCCTTCTCTCTCTCTTCTCTCTC 59.120 52.174 0.00 0.00 0.00 3.20
111 112 4.626287 GCCTTCTCTCTCTCTTCTCTCTCA 60.626 50.000 0.00 0.00 0.00 3.27
112 113 5.688807 CCTTCTCTCTCTCTTCTCTCTCAT 58.311 45.833 0.00 0.00 0.00 2.90
113 114 5.762218 CCTTCTCTCTCTCTTCTCTCTCATC 59.238 48.000 0.00 0.00 0.00 2.92
114 115 5.296151 TCTCTCTCTCTTCTCTCTCATCC 57.704 47.826 0.00 0.00 0.00 3.51
115 116 4.721274 TCTCTCTCTCTTCTCTCTCATCCA 59.279 45.833 0.00 0.00 0.00 3.41
116 117 5.191522 TCTCTCTCTCTTCTCTCTCATCCAA 59.808 44.000 0.00 0.00 0.00 3.53
117 118 5.192927 TCTCTCTCTTCTCTCTCATCCAAC 58.807 45.833 0.00 0.00 0.00 3.77
118 119 4.928263 TCTCTCTTCTCTCTCATCCAACA 58.072 43.478 0.00 0.00 0.00 3.33
119 120 4.704540 TCTCTCTTCTCTCTCATCCAACAC 59.295 45.833 0.00 0.00 0.00 3.32
120 121 4.411013 TCTCTTCTCTCTCATCCAACACA 58.589 43.478 0.00 0.00 0.00 3.72
121 122 4.462132 TCTCTTCTCTCTCATCCAACACAG 59.538 45.833 0.00 0.00 0.00 3.66
122 123 3.056250 TCTTCTCTCTCATCCAACACAGC 60.056 47.826 0.00 0.00 0.00 4.40
123 124 2.250924 TCTCTCTCATCCAACACAGCA 58.749 47.619 0.00 0.00 0.00 4.41
124 125 2.634453 TCTCTCTCATCCAACACAGCAA 59.366 45.455 0.00 0.00 0.00 3.91
125 126 3.071457 TCTCTCTCATCCAACACAGCAAA 59.929 43.478 0.00 0.00 0.00 3.68
126 127 3.141398 TCTCTCATCCAACACAGCAAAC 58.859 45.455 0.00 0.00 0.00 2.93
127 128 2.880268 CTCTCATCCAACACAGCAAACA 59.120 45.455 0.00 0.00 0.00 2.83
128 129 3.489355 TCTCATCCAACACAGCAAACAT 58.511 40.909 0.00 0.00 0.00 2.71
129 130 3.253921 TCTCATCCAACACAGCAAACATG 59.746 43.478 0.00 0.00 0.00 3.21
130 131 2.063266 CATCCAACACAGCAAACATGC 58.937 47.619 0.00 0.00 0.00 4.06
131 132 1.109609 TCCAACACAGCAAACATGCA 58.890 45.000 3.41 0.00 37.25 3.96
132 133 1.479730 TCCAACACAGCAAACATGCAA 59.520 42.857 3.41 0.00 37.25 4.08
133 134 2.102757 TCCAACACAGCAAACATGCAAT 59.897 40.909 3.41 0.00 37.25 3.56
134 135 3.320256 TCCAACACAGCAAACATGCAATA 59.680 39.130 3.41 0.00 37.25 1.90
135 136 4.021280 TCCAACACAGCAAACATGCAATAT 60.021 37.500 3.41 0.00 37.25 1.28
136 137 4.691685 CCAACACAGCAAACATGCAATATT 59.308 37.500 3.41 0.00 37.25 1.28
137 138 5.179742 CCAACACAGCAAACATGCAATATTT 59.820 36.000 3.41 0.00 37.25 1.40
138 139 6.293516 CCAACACAGCAAACATGCAATATTTT 60.294 34.615 3.41 0.00 37.25 1.82
139 140 7.095313 CCAACACAGCAAACATGCAATATTTTA 60.095 33.333 3.41 0.00 37.25 1.52
140 141 7.959689 ACACAGCAAACATGCAATATTTTAA 57.040 28.000 3.41 0.00 37.25 1.52
141 142 8.550710 ACACAGCAAACATGCAATATTTTAAT 57.449 26.923 3.41 0.00 37.25 1.40
142 143 9.001542 ACACAGCAAACATGCAATATTTTAATT 57.998 25.926 3.41 0.00 37.25 1.40
143 144 9.480538 CACAGCAAACATGCAATATTTTAATTC 57.519 29.630 3.41 0.00 37.25 2.17
144 145 9.439500 ACAGCAAACATGCAATATTTTAATTCT 57.561 25.926 3.41 0.00 37.25 2.40
151 152 9.533253 ACATGCAATATTTTAATTCTTACAGCC 57.467 29.630 0.00 0.00 0.00 4.85
152 153 9.754382 CATGCAATATTTTAATTCTTACAGCCT 57.246 29.630 0.00 0.00 0.00 4.58
163 164 5.640189 TTCTTACAGCCTACTGACTGTAC 57.360 43.478 2.51 0.00 46.25 2.90
164 165 4.919793 TCTTACAGCCTACTGACTGTACT 58.080 43.478 2.51 0.00 46.25 2.73
165 166 5.322754 TCTTACAGCCTACTGACTGTACTT 58.677 41.667 2.51 0.00 46.25 2.24
166 167 5.773680 TCTTACAGCCTACTGACTGTACTTT 59.226 40.000 2.51 0.00 46.25 2.66
167 168 6.944290 TCTTACAGCCTACTGACTGTACTTTA 59.056 38.462 2.51 0.00 46.25 1.85
168 169 7.614583 TCTTACAGCCTACTGACTGTACTTTAT 59.385 37.037 2.51 0.00 46.25 1.40
169 170 8.130671 TTACAGCCTACTGACTGTACTTTATT 57.869 34.615 2.51 0.00 46.25 1.40
170 171 9.246670 TTACAGCCTACTGACTGTACTTTATTA 57.753 33.333 2.51 0.00 46.25 0.98
174 175 9.643735 AGCCTACTGACTGTACTTTATTATACT 57.356 33.333 0.00 0.00 0.00 2.12
179 180 9.804758 ACTGACTGTACTTTATTATACTTGCTC 57.195 33.333 0.00 0.00 0.00 4.26
181 182 9.803315 TGACTGTACTTTATTATACTTGCTCTG 57.197 33.333 0.00 0.00 0.00 3.35
185 186 9.764363 TGTACTTTATTATACTTGCTCTGATGG 57.236 33.333 0.00 0.00 0.00 3.51
186 187 7.736447 ACTTTATTATACTTGCTCTGATGGC 57.264 36.000 0.00 0.00 0.00 4.40
187 188 7.512992 ACTTTATTATACTTGCTCTGATGGCT 58.487 34.615 0.00 0.00 0.00 4.75
188 189 8.651389 ACTTTATTATACTTGCTCTGATGGCTA 58.349 33.333 0.00 0.00 0.00 3.93
189 190 8.833231 TTTATTATACTTGCTCTGATGGCTAC 57.167 34.615 0.00 0.00 0.00 3.58
190 191 5.869649 TTATACTTGCTCTGATGGCTACA 57.130 39.130 0.00 0.00 0.00 2.74
191 192 4.760530 ATACTTGCTCTGATGGCTACAA 57.239 40.909 0.00 0.00 0.00 2.41
192 193 2.983229 ACTTGCTCTGATGGCTACAAG 58.017 47.619 0.00 0.00 40.19 3.16
193 194 2.568956 ACTTGCTCTGATGGCTACAAGA 59.431 45.455 7.49 0.00 38.26 3.02
194 195 3.008375 ACTTGCTCTGATGGCTACAAGAA 59.992 43.478 7.49 0.00 38.26 2.52
195 196 3.701205 TGCTCTGATGGCTACAAGAAA 57.299 42.857 0.00 0.00 0.00 2.52
196 197 3.338249 TGCTCTGATGGCTACAAGAAAC 58.662 45.455 0.00 0.00 0.00 2.78
197 198 3.008375 TGCTCTGATGGCTACAAGAAACT 59.992 43.478 0.00 0.00 0.00 2.66
198 199 3.373439 GCTCTGATGGCTACAAGAAACTG 59.627 47.826 0.00 0.00 0.00 3.16
199 200 3.338249 TCTGATGGCTACAAGAAACTGC 58.662 45.455 0.00 0.00 0.00 4.40
200 201 2.421424 CTGATGGCTACAAGAAACTGCC 59.579 50.000 0.00 0.00 43.49 4.85
203 204 2.927553 GGCTACAAGAAACTGCCATG 57.072 50.000 0.00 0.00 42.79 3.66
204 205 2.162681 GGCTACAAGAAACTGCCATGT 58.837 47.619 0.00 0.00 42.79 3.21
205 206 2.162408 GGCTACAAGAAACTGCCATGTC 59.838 50.000 0.00 0.00 42.79 3.06
206 207 2.813754 GCTACAAGAAACTGCCATGTCA 59.186 45.455 0.00 0.00 0.00 3.58
207 208 3.441572 GCTACAAGAAACTGCCATGTCAT 59.558 43.478 0.00 0.00 0.00 3.06
208 209 3.928727 ACAAGAAACTGCCATGTCATG 57.071 42.857 5.79 5.79 0.00 3.07
209 210 3.225104 ACAAGAAACTGCCATGTCATGT 58.775 40.909 11.84 0.00 0.00 3.21
210 211 4.397420 ACAAGAAACTGCCATGTCATGTA 58.603 39.130 11.84 0.04 0.00 2.29
211 212 5.012239 ACAAGAAACTGCCATGTCATGTAT 58.988 37.500 11.84 0.00 0.00 2.29
212 213 6.179756 ACAAGAAACTGCCATGTCATGTATA 58.820 36.000 11.84 0.00 0.00 1.47
213 214 6.317140 ACAAGAAACTGCCATGTCATGTATAG 59.683 38.462 11.84 8.84 0.00 1.31
214 215 4.818546 AGAAACTGCCATGTCATGTATAGC 59.181 41.667 11.84 8.22 0.00 2.97
215 216 3.131709 ACTGCCATGTCATGTATAGCC 57.868 47.619 11.84 0.00 0.00 3.93
216 217 2.439135 ACTGCCATGTCATGTATAGCCA 59.561 45.455 11.84 0.00 0.00 4.75
217 218 3.073503 ACTGCCATGTCATGTATAGCCAT 59.926 43.478 11.84 0.00 0.00 4.40
218 219 3.678289 TGCCATGTCATGTATAGCCATC 58.322 45.455 11.84 0.00 0.00 3.51
219 220 3.072768 TGCCATGTCATGTATAGCCATCA 59.927 43.478 11.84 0.00 0.00 3.07
220 221 4.263594 TGCCATGTCATGTATAGCCATCAT 60.264 41.667 11.84 0.00 0.00 2.45
221 222 4.334759 GCCATGTCATGTATAGCCATCATC 59.665 45.833 11.84 0.00 0.00 2.92
222 223 5.742063 CCATGTCATGTATAGCCATCATCT 58.258 41.667 11.84 0.00 0.00 2.90
223 224 6.631088 GCCATGTCATGTATAGCCATCATCTA 60.631 42.308 11.84 0.00 0.00 1.98
224 225 7.506971 CCATGTCATGTATAGCCATCATCTAT 58.493 38.462 11.84 0.00 0.00 1.98
225 226 8.645110 CCATGTCATGTATAGCCATCATCTATA 58.355 37.037 11.84 0.00 0.00 1.31
226 227 9.694137 CATGTCATGTATAGCCATCATCTATAG 57.306 37.037 4.53 0.00 31.71 1.31
227 228 8.829373 TGTCATGTATAGCCATCATCTATAGT 57.171 34.615 0.00 0.00 31.71 2.12
228 229 8.907885 TGTCATGTATAGCCATCATCTATAGTC 58.092 37.037 0.00 0.00 31.71 2.59
229 230 8.907885 GTCATGTATAGCCATCATCTATAGTCA 58.092 37.037 0.00 0.00 31.71 3.41
230 231 8.907885 TCATGTATAGCCATCATCTATAGTCAC 58.092 37.037 0.00 0.00 31.71 3.67
231 232 8.911965 CATGTATAGCCATCATCTATAGTCACT 58.088 37.037 0.00 0.00 31.71 3.41
232 233 8.512966 TGTATAGCCATCATCTATAGTCACTC 57.487 38.462 0.00 0.00 31.71 3.51
233 234 8.109634 TGTATAGCCATCATCTATAGTCACTCA 58.890 37.037 0.00 0.00 31.71 3.41
234 235 9.130661 GTATAGCCATCATCTATAGTCACTCAT 57.869 37.037 0.00 0.00 31.71 2.90
236 237 9.880254 ATAGCCATCATCTATAGTCACTCATAT 57.120 33.333 0.00 0.00 0.00 1.78
238 239 9.353431 AGCCATCATCTATAGTCACTCATATAG 57.647 37.037 0.00 0.00 34.59 1.31
239 240 9.130661 GCCATCATCTATAGTCACTCATATAGT 57.869 37.037 0.00 0.00 39.81 2.12
249 250 9.854668 ATAGTCACTCATATAGTAGTGTGAGTT 57.145 33.333 13.92 6.89 44.81 3.01
251 252 9.854668 AGTCACTCATATAGTAGTGTGAGTTAT 57.145 33.333 13.92 0.00 44.81 1.89
260 261 5.731591 AGTAGTGTGAGTTATAAGGTTGGC 58.268 41.667 0.00 0.00 0.00 4.52
261 262 4.910458 AGTGTGAGTTATAAGGTTGGCT 57.090 40.909 0.00 0.00 0.00 4.75
262 263 6.666546 AGTAGTGTGAGTTATAAGGTTGGCTA 59.333 38.462 0.00 0.00 0.00 3.93
263 264 6.561519 AGTGTGAGTTATAAGGTTGGCTAT 57.438 37.500 0.00 0.00 0.00 2.97
264 265 7.670605 AGTGTGAGTTATAAGGTTGGCTATA 57.329 36.000 0.00 0.00 0.00 1.31
265 266 8.086143 AGTGTGAGTTATAAGGTTGGCTATAA 57.914 34.615 0.00 0.00 0.00 0.98
266 267 8.714906 AGTGTGAGTTATAAGGTTGGCTATAAT 58.285 33.333 0.00 0.00 0.00 1.28
267 268 9.991906 GTGTGAGTTATAAGGTTGGCTATAATA 57.008 33.333 0.00 0.00 0.00 0.98
341 342 6.539649 TTTGTCTACAAATCCGCATATAGC 57.460 37.500 4.19 0.00 40.55 2.97
342 343 5.468540 TGTCTACAAATCCGCATATAGCT 57.531 39.130 0.00 0.00 42.61 3.32
343 344 6.584185 TGTCTACAAATCCGCATATAGCTA 57.416 37.500 0.00 0.00 42.61 3.32
344 345 6.621613 TGTCTACAAATCCGCATATAGCTAG 58.378 40.000 0.00 0.00 42.61 3.42
345 346 6.037098 GTCTACAAATCCGCATATAGCTAGG 58.963 44.000 0.00 0.00 42.61 3.02
346 347 3.600388 ACAAATCCGCATATAGCTAGGC 58.400 45.455 0.00 2.15 42.61 3.93
347 348 3.261897 ACAAATCCGCATATAGCTAGGCT 59.738 43.478 0.00 0.00 43.41 4.58
348 349 3.810310 AATCCGCATATAGCTAGGCTC 57.190 47.619 0.00 0.00 40.44 4.70
349 350 2.516227 TCCGCATATAGCTAGGCTCT 57.484 50.000 0.00 0.00 40.44 4.09
350 351 2.808919 TCCGCATATAGCTAGGCTCTT 58.191 47.619 0.00 0.00 40.44 2.85
351 352 2.493675 TCCGCATATAGCTAGGCTCTTG 59.506 50.000 0.00 0.00 40.44 3.02
352 353 2.266554 CGCATATAGCTAGGCTCTTGC 58.733 52.381 0.00 3.71 40.44 4.01
353 354 2.353109 CGCATATAGCTAGGCTCTTGCA 60.353 50.000 15.83 0.00 40.44 4.08
354 355 3.678252 CGCATATAGCTAGGCTCTTGCAT 60.678 47.826 15.83 5.62 40.44 3.96
355 356 3.622163 GCATATAGCTAGGCTCTTGCATG 59.378 47.826 0.00 0.00 40.44 4.06
356 357 4.622457 GCATATAGCTAGGCTCTTGCATGA 60.622 45.833 0.00 1.92 40.44 3.07
357 358 5.485620 CATATAGCTAGGCTCTTGCATGAA 58.514 41.667 0.00 0.00 40.44 2.57
358 359 2.795231 AGCTAGGCTCTTGCATGAAA 57.205 45.000 0.00 0.00 41.91 2.69
359 360 2.641305 AGCTAGGCTCTTGCATGAAAG 58.359 47.619 7.16 7.16 41.91 2.62
360 361 2.026449 AGCTAGGCTCTTGCATGAAAGT 60.026 45.455 13.35 0.00 41.91 2.66
361 362 2.354199 GCTAGGCTCTTGCATGAAAGTC 59.646 50.000 13.35 6.62 41.91 3.01
362 363 1.831580 AGGCTCTTGCATGAAAGTCC 58.168 50.000 13.35 14.58 41.91 3.85
363 364 1.074405 AGGCTCTTGCATGAAAGTCCA 59.926 47.619 21.51 2.62 41.91 4.02
364 365 1.200948 GGCTCTTGCATGAAAGTCCAC 59.799 52.381 13.35 1.89 41.91 4.02
365 366 2.157738 GCTCTTGCATGAAAGTCCACT 58.842 47.619 13.35 0.00 39.41 4.00
366 367 2.555757 GCTCTTGCATGAAAGTCCACTT 59.444 45.455 13.35 0.00 39.41 3.16
367 368 3.005155 GCTCTTGCATGAAAGTCCACTTT 59.995 43.478 13.35 4.32 42.76 2.66
379 380 6.710597 AAAGTCCACTTTCCTTACCTTTTC 57.289 37.500 0.00 0.00 42.02 2.29
380 381 5.382664 AGTCCACTTTCCTTACCTTTTCA 57.617 39.130 0.00 0.00 0.00 2.69
381 382 5.953571 AGTCCACTTTCCTTACCTTTTCAT 58.046 37.500 0.00 0.00 0.00 2.57
382 383 6.004574 AGTCCACTTTCCTTACCTTTTCATC 58.995 40.000 0.00 0.00 0.00 2.92
383 384 6.004574 GTCCACTTTCCTTACCTTTTCATCT 58.995 40.000 0.00 0.00 0.00 2.90
384 385 6.149640 GTCCACTTTCCTTACCTTTTCATCTC 59.850 42.308 0.00 0.00 0.00 2.75
385 386 6.044404 TCCACTTTCCTTACCTTTTCATCTCT 59.956 38.462 0.00 0.00 0.00 3.10
386 387 6.372937 CCACTTTCCTTACCTTTTCATCTCTC 59.627 42.308 0.00 0.00 0.00 3.20
387 388 7.164803 CACTTTCCTTACCTTTTCATCTCTCT 58.835 38.462 0.00 0.00 0.00 3.10
388 389 7.333174 CACTTTCCTTACCTTTTCATCTCTCTC 59.667 40.741 0.00 0.00 0.00 3.20
389 390 5.941555 TCCTTACCTTTTCATCTCTCTCC 57.058 43.478 0.00 0.00 0.00 3.71
390 391 5.594777 TCCTTACCTTTTCATCTCTCTCCT 58.405 41.667 0.00 0.00 0.00 3.69
391 392 5.659079 TCCTTACCTTTTCATCTCTCTCCTC 59.341 44.000 0.00 0.00 0.00 3.71
392 393 5.163353 CCTTACCTTTTCATCTCTCTCCTCC 60.163 48.000 0.00 0.00 0.00 4.30
393 394 3.796111 ACCTTTTCATCTCTCTCCTCCA 58.204 45.455 0.00 0.00 0.00 3.86
394 395 3.517500 ACCTTTTCATCTCTCTCCTCCAC 59.482 47.826 0.00 0.00 0.00 4.02
395 396 3.517100 CCTTTTCATCTCTCTCCTCCACA 59.483 47.826 0.00 0.00 0.00 4.17
396 397 4.163839 CCTTTTCATCTCTCTCCTCCACAT 59.836 45.833 0.00 0.00 0.00 3.21
397 398 5.365025 CCTTTTCATCTCTCTCCTCCACATA 59.635 44.000 0.00 0.00 0.00 2.29
398 399 6.043012 CCTTTTCATCTCTCTCCTCCACATAT 59.957 42.308 0.00 0.00 0.00 1.78
399 400 6.416631 TTTCATCTCTCTCCTCCACATATG 57.583 41.667 0.00 0.00 0.00 1.78
400 401 3.831333 TCATCTCTCTCCTCCACATATGC 59.169 47.826 1.58 0.00 0.00 3.14
401 402 3.319031 TCTCTCTCCTCCACATATGCA 57.681 47.619 1.58 0.00 0.00 3.96
402 403 3.646534 TCTCTCTCCTCCACATATGCAA 58.353 45.455 1.58 0.00 0.00 4.08
403 404 4.033009 TCTCTCTCCTCCACATATGCAAA 58.967 43.478 1.58 0.00 0.00 3.68
404 405 4.471025 TCTCTCTCCTCCACATATGCAAAA 59.529 41.667 1.58 0.00 0.00 2.44
405 406 5.045651 TCTCTCTCCTCCACATATGCAAAAA 60.046 40.000 1.58 0.00 0.00 1.94
406 407 4.943705 TCTCTCCTCCACATATGCAAAAAC 59.056 41.667 1.58 0.00 0.00 2.43
407 408 3.689161 TCTCCTCCACATATGCAAAAACG 59.311 43.478 1.58 0.00 0.00 3.60
408 409 3.417101 TCCTCCACATATGCAAAAACGT 58.583 40.909 1.58 0.00 0.00 3.99
409 410 3.438781 TCCTCCACATATGCAAAAACGTC 59.561 43.478 1.58 0.00 0.00 4.34
410 411 3.190327 CCTCCACATATGCAAAAACGTCA 59.810 43.478 1.58 0.00 0.00 4.35
411 412 4.142403 CCTCCACATATGCAAAAACGTCAT 60.142 41.667 1.58 0.00 0.00 3.06
412 413 4.731720 TCCACATATGCAAAAACGTCATG 58.268 39.130 1.58 0.00 0.00 3.07
413 414 4.217334 TCCACATATGCAAAAACGTCATGT 59.783 37.500 1.58 0.00 0.00 3.21
414 415 5.412904 TCCACATATGCAAAAACGTCATGTA 59.587 36.000 1.58 0.00 0.00 2.29
415 416 5.511377 CCACATATGCAAAAACGTCATGTAC 59.489 40.000 1.58 0.00 0.00 2.90
423 424 2.410060 CGTCATGTACGCGGGCTA 59.590 61.111 12.47 0.00 46.10 3.93
424 425 1.007734 CGTCATGTACGCGGGCTAT 60.008 57.895 12.47 0.00 46.10 2.97
425 426 0.239082 CGTCATGTACGCGGGCTATA 59.761 55.000 12.47 0.00 46.10 1.31
426 427 1.335233 CGTCATGTACGCGGGCTATAA 60.335 52.381 12.47 0.00 46.10 0.98
427 428 2.325761 GTCATGTACGCGGGCTATAAG 58.674 52.381 12.47 0.00 0.00 1.73
428 429 1.068474 CATGTACGCGGGCTATAAGC 58.932 55.000 12.47 0.00 41.46 3.09
446 447 9.262358 GCTATAAGCCCACTATTATATACTTGC 57.738 37.037 0.00 0.00 34.48 4.01
449 450 7.560796 AAGCCCACTATTATATACTTGCTCT 57.439 36.000 0.00 0.00 0.00 4.09
450 451 8.666129 AAGCCCACTATTATATACTTGCTCTA 57.334 34.615 0.00 0.00 0.00 2.43
451 452 8.666129 AGCCCACTATTATATACTTGCTCTAA 57.334 34.615 0.00 0.00 0.00 2.10
452 453 9.101325 AGCCCACTATTATATACTTGCTCTAAA 57.899 33.333 0.00 0.00 0.00 1.85
453 454 9.372369 GCCCACTATTATATACTTGCTCTAAAG 57.628 37.037 0.00 0.00 0.00 1.85
471 472 9.549078 GCTCTAAAGCTAATCCATAAACTTACT 57.451 33.333 0.00 0.00 45.55 2.24
477 478 9.780186 AAGCTAATCCATAAACTTACTGTATCC 57.220 33.333 0.00 0.00 0.00 2.59
478 479 8.376270 AGCTAATCCATAAACTTACTGTATCCC 58.624 37.037 0.00 0.00 0.00 3.85
479 480 8.154856 GCTAATCCATAAACTTACTGTATCCCA 58.845 37.037 0.00 0.00 0.00 4.37
482 483 9.762381 AATCCATAAACTTACTGTATCCCAAAA 57.238 29.630 0.00 0.00 0.00 2.44
483 484 8.570068 TCCATAAACTTACTGTATCCCAAAAC 57.430 34.615 0.00 0.00 0.00 2.43
484 485 8.164733 TCCATAAACTTACTGTATCCCAAAACA 58.835 33.333 0.00 0.00 0.00 2.83
485 486 8.798402 CCATAAACTTACTGTATCCCAAAACAA 58.202 33.333 0.00 0.00 0.00 2.83
495 496 8.463607 ACTGTATCCCAAAACAAAATATTACCG 58.536 33.333 0.00 0.00 0.00 4.02
496 497 7.259161 TGTATCCCAAAACAAAATATTACCGC 58.741 34.615 0.00 0.00 0.00 5.68
497 498 5.986501 TCCCAAAACAAAATATTACCGCT 57.013 34.783 0.00 0.00 0.00 5.52
498 499 5.715070 TCCCAAAACAAAATATTACCGCTG 58.285 37.500 0.00 0.00 0.00 5.18
499 500 4.867608 CCCAAAACAAAATATTACCGCTGG 59.132 41.667 0.00 0.00 0.00 4.85
500 501 5.474825 CCAAAACAAAATATTACCGCTGGT 58.525 37.500 5.58 5.58 40.16 4.00
501 502 5.929415 CCAAAACAAAATATTACCGCTGGTT 59.071 36.000 5.57 0.00 37.09 3.67
502 503 7.091443 CCAAAACAAAATATTACCGCTGGTTA 58.909 34.615 5.57 0.00 37.09 2.85
503 504 7.762159 CCAAAACAAAATATTACCGCTGGTTAT 59.238 33.333 5.57 5.24 37.09 1.89
504 505 9.790389 CAAAACAAAATATTACCGCTGGTTATA 57.210 29.630 5.57 7.12 37.09 0.98
506 507 8.967664 AACAAAATATTACCGCTGGTTATAGA 57.032 30.769 5.57 0.00 37.09 1.98
507 508 8.967664 ACAAAATATTACCGCTGGTTATAGAA 57.032 30.769 5.57 0.00 37.09 2.10
508 509 9.398538 ACAAAATATTACCGCTGGTTATAGAAA 57.601 29.630 5.57 0.00 37.09 2.52
515 516 9.841295 ATTACCGCTGGTTATAGAAAAATAAGA 57.159 29.630 5.57 0.00 37.09 2.10
516 517 9.669887 TTACCGCTGGTTATAGAAAAATAAGAA 57.330 29.630 5.57 0.00 37.09 2.52
517 518 8.570068 ACCGCTGGTTATAGAAAAATAAGAAA 57.430 30.769 0.00 0.00 27.29 2.52
518 519 9.016438 ACCGCTGGTTATAGAAAAATAAGAAAA 57.984 29.630 0.00 0.00 27.29 2.29
519 520 9.285770 CCGCTGGTTATAGAAAAATAAGAAAAC 57.714 33.333 0.00 0.00 0.00 2.43
520 521 9.834628 CGCTGGTTATAGAAAAATAAGAAAACA 57.165 29.630 0.00 0.00 0.00 2.83
530 531 9.893305 AGAAAAATAAGAAAACATTCCGTGTAG 57.107 29.630 0.00 0.00 41.14 2.74
531 532 9.673454 GAAAAATAAGAAAACATTCCGTGTAGT 57.327 29.630 0.00 0.00 41.14 2.73
602 603 4.746611 CCATGCAGAAAACAGAAGGAAAAC 59.253 41.667 0.00 0.00 0.00 2.43
918 975 0.318762 GTCAGTCACCACTCTCACCC 59.681 60.000 0.00 0.00 0.00 4.61
951 1008 4.047822 CGACTGATACTGCATTCCTTCTC 58.952 47.826 0.00 0.00 0.00 2.87
1715 1799 3.199946 TGGAGCCTGAAATAACGAGGATT 59.800 43.478 0.00 0.00 0.00 3.01
1809 1902 1.203441 TGCCCTGATCTCCTTGCACT 61.203 55.000 0.00 0.00 0.00 4.40
1815 1908 3.307269 CCTGATCTCCTTGCACTTCTTCA 60.307 47.826 0.00 0.00 0.00 3.02
1817 1910 2.550830 TCTCCTTGCACTTCTTCACC 57.449 50.000 0.00 0.00 0.00 4.02
1907 2003 3.039252 TGAAAGCCAGAAGGGGAAAAA 57.961 42.857 0.00 0.00 37.04 1.94
1912 2008 1.924731 CCAGAAGGGGAAAAAGGTCC 58.075 55.000 0.00 0.00 36.90 4.46
2200 2311 0.886043 TGTGCTGATGTGCGAGCTTT 60.886 50.000 0.00 0.00 36.11 3.51
2201 2312 0.239347 GTGCTGATGTGCGAGCTTTT 59.761 50.000 0.00 0.00 36.11 2.27
2419 2530 1.237285 CGAGCTTTTGACCTGGGGTG 61.237 60.000 0.00 0.00 35.25 4.61
2529 2640 3.067742 TCCTACATGTAACTTAGCTCGCC 59.932 47.826 7.06 0.00 0.00 5.54
2531 2642 1.209128 CATGTAACTTAGCTCGCCGG 58.791 55.000 0.00 0.00 0.00 6.13
2542 2653 2.152830 AGCTCGCCGGTTACTATCTAG 58.847 52.381 1.90 0.00 0.00 2.43
2543 2654 1.878734 GCTCGCCGGTTACTATCTAGT 59.121 52.381 1.90 0.00 40.24 2.57
2545 2656 3.688673 GCTCGCCGGTTACTATCTAGTAT 59.311 47.826 1.90 0.00 38.48 2.12
2548 2659 6.128172 GCTCGCCGGTTACTATCTAGTATAAA 60.128 42.308 1.90 0.00 38.48 1.40
2550 2661 8.165239 TCGCCGGTTACTATCTAGTATAAAAA 57.835 34.615 1.90 0.00 38.48 1.94
2551 2662 8.796475 TCGCCGGTTACTATCTAGTATAAAAAT 58.204 33.333 1.90 0.00 38.48 1.82
2552 2663 8.857216 CGCCGGTTACTATCTAGTATAAAAATG 58.143 37.037 1.90 0.00 38.48 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.445945 AGGTGAGCCATCTAATGAAGTAATAC 58.554 38.462 0.00 0.00 37.19 1.89
1 2 7.618019 AGGTGAGCCATCTAATGAAGTAATA 57.382 36.000 0.00 0.00 37.19 0.98
2 3 6.506538 AGGTGAGCCATCTAATGAAGTAAT 57.493 37.500 0.00 0.00 37.19 1.89
3 4 5.957771 AGGTGAGCCATCTAATGAAGTAA 57.042 39.130 0.00 0.00 37.19 2.24
4 5 5.957771 AAGGTGAGCCATCTAATGAAGTA 57.042 39.130 0.00 0.00 37.19 2.24
5 6 4.851639 AAGGTGAGCCATCTAATGAAGT 57.148 40.909 0.00 0.00 37.19 3.01
6 7 5.525378 GTGTAAGGTGAGCCATCTAATGAAG 59.475 44.000 0.00 0.00 37.19 3.02
7 8 5.189736 AGTGTAAGGTGAGCCATCTAATGAA 59.810 40.000 0.00 0.00 37.19 2.57
8 9 4.716784 AGTGTAAGGTGAGCCATCTAATGA 59.283 41.667 0.00 0.00 37.19 2.57
9 10 5.028549 AGTGTAAGGTGAGCCATCTAATG 57.971 43.478 0.00 0.00 37.19 1.90
10 11 4.965532 AGAGTGTAAGGTGAGCCATCTAAT 59.034 41.667 0.00 0.00 37.19 1.73
11 12 4.353777 AGAGTGTAAGGTGAGCCATCTAA 58.646 43.478 0.00 0.00 37.19 2.10
12 13 3.954904 GAGAGTGTAAGGTGAGCCATCTA 59.045 47.826 0.00 0.00 37.19 1.98
13 14 2.763448 GAGAGTGTAAGGTGAGCCATCT 59.237 50.000 0.00 0.00 37.19 2.90
14 15 2.497675 TGAGAGTGTAAGGTGAGCCATC 59.502 50.000 0.00 0.00 37.19 3.51
15 16 2.234908 GTGAGAGTGTAAGGTGAGCCAT 59.765 50.000 0.00 0.00 37.19 4.40
16 17 1.618837 GTGAGAGTGTAAGGTGAGCCA 59.381 52.381 0.00 0.00 37.19 4.75
17 18 1.618837 TGTGAGAGTGTAAGGTGAGCC 59.381 52.381 0.00 0.00 0.00 4.70
18 19 3.601443 ATGTGAGAGTGTAAGGTGAGC 57.399 47.619 0.00 0.00 0.00 4.26
19 20 4.887748 ACAATGTGAGAGTGTAAGGTGAG 58.112 43.478 0.00 0.00 28.87 3.51
20 21 4.955811 ACAATGTGAGAGTGTAAGGTGA 57.044 40.909 0.00 0.00 28.87 4.02
21 22 5.760253 AGAAACAATGTGAGAGTGTAAGGTG 59.240 40.000 0.00 0.00 31.02 4.00
22 23 5.930135 AGAAACAATGTGAGAGTGTAAGGT 58.070 37.500 0.00 0.00 31.02 3.50
23 24 6.293626 CCAAGAAACAATGTGAGAGTGTAAGG 60.294 42.308 0.00 0.00 31.02 2.69
24 25 6.483307 TCCAAGAAACAATGTGAGAGTGTAAG 59.517 38.462 0.00 0.00 31.02 2.34
25 26 6.353323 TCCAAGAAACAATGTGAGAGTGTAA 58.647 36.000 0.00 0.00 31.02 2.41
26 27 5.924356 TCCAAGAAACAATGTGAGAGTGTA 58.076 37.500 0.00 0.00 31.02 2.90
27 28 4.780815 TCCAAGAAACAATGTGAGAGTGT 58.219 39.130 0.00 0.00 33.17 3.55
28 29 5.059161 TCTCCAAGAAACAATGTGAGAGTG 58.941 41.667 0.00 0.00 0.00 3.51
29 30 5.296151 TCTCCAAGAAACAATGTGAGAGT 57.704 39.130 0.00 0.00 0.00 3.24
30 31 6.261826 ACTTTCTCCAAGAAACAATGTGAGAG 59.738 38.462 0.00 0.00 39.13 3.20
31 32 6.038603 CACTTTCTCCAAGAAACAATGTGAGA 59.961 38.462 11.26 0.00 39.13 3.27
32 33 6.204359 CACTTTCTCCAAGAAACAATGTGAG 58.796 40.000 11.26 0.00 39.13 3.51
33 34 5.450412 GCACTTTCTCCAAGAAACAATGTGA 60.450 40.000 17.02 0.00 39.13 3.58
34 35 4.741676 GCACTTTCTCCAAGAAACAATGTG 59.258 41.667 11.93 11.93 39.13 3.21
35 36 4.646492 AGCACTTTCTCCAAGAAACAATGT 59.354 37.500 0.00 0.00 39.13 2.71
36 37 4.980434 CAGCACTTTCTCCAAGAAACAATG 59.020 41.667 0.00 0.34 39.13 2.82
37 38 4.500375 GCAGCACTTTCTCCAAGAAACAAT 60.500 41.667 0.00 0.00 39.13 2.71
38 39 3.181487 GCAGCACTTTCTCCAAGAAACAA 60.181 43.478 0.00 0.00 39.13 2.83
39 40 2.358898 GCAGCACTTTCTCCAAGAAACA 59.641 45.455 0.00 0.00 39.13 2.83
40 41 2.358898 TGCAGCACTTTCTCCAAGAAAC 59.641 45.455 0.00 0.00 39.13 2.78
41 42 2.620115 CTGCAGCACTTTCTCCAAGAAA 59.380 45.455 0.00 2.44 41.51 2.52
42 43 2.224606 CTGCAGCACTTTCTCCAAGAA 58.775 47.619 0.00 0.00 36.21 2.52
43 44 1.888215 CTGCAGCACTTTCTCCAAGA 58.112 50.000 0.00 0.00 36.21 3.02
44 45 0.240411 GCTGCAGCACTTTCTCCAAG 59.760 55.000 33.36 0.00 41.59 3.61
45 46 1.174712 GGCTGCAGCACTTTCTCCAA 61.175 55.000 37.63 0.00 44.36 3.53
46 47 1.601759 GGCTGCAGCACTTTCTCCA 60.602 57.895 37.63 0.00 44.36 3.86
47 48 2.684843 CGGCTGCAGCACTTTCTCC 61.685 63.158 37.63 18.00 44.36 3.71
48 49 2.684843 CCGGCTGCAGCACTTTCTC 61.685 63.158 37.63 18.73 44.36 2.87
49 50 2.670934 CCGGCTGCAGCACTTTCT 60.671 61.111 37.63 0.00 44.36 2.52
50 51 4.410743 GCCGGCTGCAGCACTTTC 62.411 66.667 37.63 20.18 44.36 2.62
51 52 4.962836 AGCCGGCTGCAGCACTTT 62.963 61.111 37.63 18.77 44.83 2.66
61 62 0.104304 CGGTAGATTAACAGCCGGCT 59.896 55.000 27.08 27.08 38.86 5.52
62 63 0.179092 ACGGTAGATTAACAGCCGGC 60.179 55.000 21.89 21.89 45.85 6.13
63 64 1.537562 GGACGGTAGATTAACAGCCGG 60.538 57.143 0.00 0.00 45.85 6.13
64 65 1.135527 TGGACGGTAGATTAACAGCCG 59.864 52.381 0.00 0.00 46.83 5.52
65 66 2.167900 AGTGGACGGTAGATTAACAGCC 59.832 50.000 0.00 0.00 0.00 4.85
66 67 3.521947 AGTGGACGGTAGATTAACAGC 57.478 47.619 0.00 0.00 0.00 4.40
67 68 3.617263 GCAAGTGGACGGTAGATTAACAG 59.383 47.826 0.00 0.00 0.00 3.16
68 69 3.592059 GCAAGTGGACGGTAGATTAACA 58.408 45.455 0.00 0.00 0.00 2.41
69 70 2.934553 GGCAAGTGGACGGTAGATTAAC 59.065 50.000 0.00 0.00 0.00 2.01
70 71 2.835764 AGGCAAGTGGACGGTAGATTAA 59.164 45.455 0.00 0.00 0.00 1.40
71 72 2.463752 AGGCAAGTGGACGGTAGATTA 58.536 47.619 0.00 0.00 0.00 1.75
72 73 1.276622 AGGCAAGTGGACGGTAGATT 58.723 50.000 0.00 0.00 0.00 2.40
73 74 1.207329 GAAGGCAAGTGGACGGTAGAT 59.793 52.381 0.00 0.00 0.00 1.98
74 75 0.606604 GAAGGCAAGTGGACGGTAGA 59.393 55.000 0.00 0.00 0.00 2.59
75 76 0.608640 AGAAGGCAAGTGGACGGTAG 59.391 55.000 0.00 0.00 0.00 3.18
76 77 0.606604 GAGAAGGCAAGTGGACGGTA 59.393 55.000 0.00 0.00 0.00 4.02
77 78 1.122019 AGAGAAGGCAAGTGGACGGT 61.122 55.000 0.00 0.00 0.00 4.83
78 79 0.390472 GAGAGAAGGCAAGTGGACGG 60.390 60.000 0.00 0.00 0.00 4.79
79 80 0.605589 AGAGAGAAGGCAAGTGGACG 59.394 55.000 0.00 0.00 0.00 4.79
80 81 1.899142 AGAGAGAGAAGGCAAGTGGAC 59.101 52.381 0.00 0.00 0.00 4.02
81 82 2.175202 GAGAGAGAGAAGGCAAGTGGA 58.825 52.381 0.00 0.00 0.00 4.02
82 83 2.178580 AGAGAGAGAGAAGGCAAGTGG 58.821 52.381 0.00 0.00 0.00 4.00
83 84 3.511146 AGAAGAGAGAGAGAAGGCAAGTG 59.489 47.826 0.00 0.00 0.00 3.16
84 85 3.763897 GAGAAGAGAGAGAGAAGGCAAGT 59.236 47.826 0.00 0.00 0.00 3.16
85 86 4.019174 AGAGAAGAGAGAGAGAAGGCAAG 58.981 47.826 0.00 0.00 0.00 4.01
86 87 4.016444 GAGAGAAGAGAGAGAGAAGGCAA 58.984 47.826 0.00 0.00 0.00 4.52
87 88 3.266772 AGAGAGAAGAGAGAGAGAAGGCA 59.733 47.826 0.00 0.00 0.00 4.75
88 89 3.879892 GAGAGAGAAGAGAGAGAGAAGGC 59.120 52.174 0.00 0.00 0.00 4.35
89 90 5.102953 TGAGAGAGAAGAGAGAGAGAAGG 57.897 47.826 0.00 0.00 0.00 3.46
90 91 5.762218 GGATGAGAGAGAAGAGAGAGAGAAG 59.238 48.000 0.00 0.00 0.00 2.85
91 92 5.191522 TGGATGAGAGAGAAGAGAGAGAGAA 59.808 44.000 0.00 0.00 0.00 2.87
92 93 4.721274 TGGATGAGAGAGAAGAGAGAGAGA 59.279 45.833 0.00 0.00 0.00 3.10
93 94 5.039920 TGGATGAGAGAGAAGAGAGAGAG 57.960 47.826 0.00 0.00 0.00 3.20
94 95 5.192927 GTTGGATGAGAGAGAAGAGAGAGA 58.807 45.833 0.00 0.00 0.00 3.10
95 96 4.949238 TGTTGGATGAGAGAGAAGAGAGAG 59.051 45.833 0.00 0.00 0.00 3.20
96 97 4.704540 GTGTTGGATGAGAGAGAAGAGAGA 59.295 45.833 0.00 0.00 0.00 3.10
97 98 4.462132 TGTGTTGGATGAGAGAGAAGAGAG 59.538 45.833 0.00 0.00 0.00 3.20
98 99 4.411013 TGTGTTGGATGAGAGAGAAGAGA 58.589 43.478 0.00 0.00 0.00 3.10
99 100 4.746729 CTGTGTTGGATGAGAGAGAAGAG 58.253 47.826 0.00 0.00 0.00 2.85
100 101 3.056250 GCTGTGTTGGATGAGAGAGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
101 102 3.260740 GCTGTGTTGGATGAGAGAGAAG 58.739 50.000 0.00 0.00 0.00 2.85
102 103 2.634453 TGCTGTGTTGGATGAGAGAGAA 59.366 45.455 0.00 0.00 0.00 2.87
103 104 2.250924 TGCTGTGTTGGATGAGAGAGA 58.749 47.619 0.00 0.00 0.00 3.10
104 105 2.756840 TGCTGTGTTGGATGAGAGAG 57.243 50.000 0.00 0.00 0.00 3.20
105 106 3.141398 GTTTGCTGTGTTGGATGAGAGA 58.859 45.455 0.00 0.00 0.00 3.10
106 107 2.880268 TGTTTGCTGTGTTGGATGAGAG 59.120 45.455 0.00 0.00 0.00 3.20
107 108 2.929641 TGTTTGCTGTGTTGGATGAGA 58.070 42.857 0.00 0.00 0.00 3.27
108 109 3.571571 CATGTTTGCTGTGTTGGATGAG 58.428 45.455 0.00 0.00 0.00 2.90
109 110 2.288334 GCATGTTTGCTGTGTTGGATGA 60.288 45.455 0.00 0.00 45.77 2.92
110 111 2.063266 GCATGTTTGCTGTGTTGGATG 58.937 47.619 0.00 0.00 45.77 3.51
111 112 2.443887 GCATGTTTGCTGTGTTGGAT 57.556 45.000 0.00 0.00 45.77 3.41
112 113 3.963676 GCATGTTTGCTGTGTTGGA 57.036 47.368 0.00 0.00 45.77 3.53
125 126 9.533253 GGCTGTAAGAATTAAAATATTGCATGT 57.467 29.630 0.00 0.00 34.07 3.21
126 127 9.754382 AGGCTGTAAGAATTAAAATATTGCATG 57.246 29.630 0.00 0.00 34.07 4.06
134 135 9.167311 CAGTCAGTAGGCTGTAAGAATTAAAAT 57.833 33.333 0.00 0.00 43.05 1.82
135 136 8.154856 ACAGTCAGTAGGCTGTAAGAATTAAAA 58.845 33.333 0.20 0.00 43.30 1.52
136 137 7.676947 ACAGTCAGTAGGCTGTAAGAATTAAA 58.323 34.615 0.20 0.00 43.30 1.52
137 138 7.241042 ACAGTCAGTAGGCTGTAAGAATTAA 57.759 36.000 0.20 0.00 43.30 1.40
138 139 6.852420 ACAGTCAGTAGGCTGTAAGAATTA 57.148 37.500 0.20 0.00 43.30 1.40
139 140 5.746990 ACAGTCAGTAGGCTGTAAGAATT 57.253 39.130 0.20 0.00 43.30 2.17
140 141 5.952947 AGTACAGTCAGTAGGCTGTAAGAAT 59.047 40.000 11.07 0.00 45.94 2.40
141 142 5.322754 AGTACAGTCAGTAGGCTGTAAGAA 58.677 41.667 11.07 0.00 45.94 2.52
142 143 4.919793 AGTACAGTCAGTAGGCTGTAAGA 58.080 43.478 11.07 0.00 45.94 2.10
143 144 5.646577 AAGTACAGTCAGTAGGCTGTAAG 57.353 43.478 11.07 0.00 45.94 2.34
144 145 7.713734 ATAAAGTACAGTCAGTAGGCTGTAA 57.286 36.000 11.07 0.00 45.94 2.41
145 146 7.713734 AATAAAGTACAGTCAGTAGGCTGTA 57.286 36.000 5.90 5.90 43.30 2.74
146 147 6.607004 AATAAAGTACAGTCAGTAGGCTGT 57.393 37.500 7.91 7.91 46.33 4.40
147 148 9.680315 GTATAATAAAGTACAGTCAGTAGGCTG 57.320 37.037 0.00 0.00 43.87 4.85
148 149 9.643735 AGTATAATAAAGTACAGTCAGTAGGCT 57.356 33.333 0.00 0.00 32.19 4.58
153 154 9.804758 GAGCAAGTATAATAAAGTACAGTCAGT 57.195 33.333 0.00 0.00 0.00 3.41
155 156 9.803315 CAGAGCAAGTATAATAAAGTACAGTCA 57.197 33.333 0.00 0.00 0.00 3.41
159 160 9.764363 CCATCAGAGCAAGTATAATAAAGTACA 57.236 33.333 0.00 0.00 0.00 2.90
160 161 8.713271 GCCATCAGAGCAAGTATAATAAAGTAC 58.287 37.037 0.00 0.00 0.00 2.73
161 162 8.651389 AGCCATCAGAGCAAGTATAATAAAGTA 58.349 33.333 0.00 0.00 0.00 2.24
162 163 7.512992 AGCCATCAGAGCAAGTATAATAAAGT 58.487 34.615 0.00 0.00 0.00 2.66
163 164 7.976135 AGCCATCAGAGCAAGTATAATAAAG 57.024 36.000 0.00 0.00 0.00 1.85
164 165 8.428852 TGTAGCCATCAGAGCAAGTATAATAAA 58.571 33.333 0.00 0.00 0.00 1.40
165 166 7.962441 TGTAGCCATCAGAGCAAGTATAATAA 58.038 34.615 0.00 0.00 0.00 1.40
166 167 7.539034 TGTAGCCATCAGAGCAAGTATAATA 57.461 36.000 0.00 0.00 0.00 0.98
167 168 6.425210 TGTAGCCATCAGAGCAAGTATAAT 57.575 37.500 0.00 0.00 0.00 1.28
168 169 5.869649 TGTAGCCATCAGAGCAAGTATAA 57.130 39.130 0.00 0.00 0.00 0.98
169 170 5.598417 TCTTGTAGCCATCAGAGCAAGTATA 59.402 40.000 0.00 0.00 35.96 1.47
170 171 4.406972 TCTTGTAGCCATCAGAGCAAGTAT 59.593 41.667 0.00 0.00 35.96 2.12
171 172 3.769300 TCTTGTAGCCATCAGAGCAAGTA 59.231 43.478 0.00 0.00 35.96 2.24
172 173 2.568956 TCTTGTAGCCATCAGAGCAAGT 59.431 45.455 0.00 0.00 35.96 3.16
173 174 3.257469 TCTTGTAGCCATCAGAGCAAG 57.743 47.619 0.00 0.00 35.86 4.01
174 175 3.701205 TTCTTGTAGCCATCAGAGCAA 57.299 42.857 0.00 0.00 0.00 3.91
175 176 3.008375 AGTTTCTTGTAGCCATCAGAGCA 59.992 43.478 0.00 0.00 0.00 4.26
176 177 3.373439 CAGTTTCTTGTAGCCATCAGAGC 59.627 47.826 0.00 0.00 0.00 4.09
177 178 3.373439 GCAGTTTCTTGTAGCCATCAGAG 59.627 47.826 0.00 0.00 0.00 3.35
178 179 3.338249 GCAGTTTCTTGTAGCCATCAGA 58.662 45.455 0.00 0.00 0.00 3.27
179 180 2.421424 GGCAGTTTCTTGTAGCCATCAG 59.579 50.000 0.00 0.00 44.59 2.90
180 181 2.436417 GGCAGTTTCTTGTAGCCATCA 58.564 47.619 0.00 0.00 44.59 3.07
184 185 2.162408 GACATGGCAGTTTCTTGTAGCC 59.838 50.000 0.00 0.00 45.41 3.93
185 186 2.813754 TGACATGGCAGTTTCTTGTAGC 59.186 45.455 0.00 0.00 0.00 3.58
186 187 4.456911 ACATGACATGGCAGTTTCTTGTAG 59.543 41.667 19.39 0.00 33.60 2.74
187 188 4.397420 ACATGACATGGCAGTTTCTTGTA 58.603 39.130 19.39 0.00 33.60 2.41
188 189 3.225104 ACATGACATGGCAGTTTCTTGT 58.775 40.909 19.39 1.75 33.60 3.16
189 190 3.928727 ACATGACATGGCAGTTTCTTG 57.071 42.857 19.39 0.99 33.60 3.02
190 191 5.297776 GCTATACATGACATGGCAGTTTCTT 59.702 40.000 19.39 0.00 30.84 2.52
191 192 4.818546 GCTATACATGACATGGCAGTTTCT 59.181 41.667 19.39 0.00 30.84 2.52
192 193 4.023707 GGCTATACATGACATGGCAGTTTC 60.024 45.833 19.39 2.83 31.98 2.78
193 194 3.885297 GGCTATACATGACATGGCAGTTT 59.115 43.478 19.39 3.55 31.98 2.66
194 195 3.117926 TGGCTATACATGACATGGCAGTT 60.118 43.478 19.39 0.00 31.98 3.16
195 196 2.439135 TGGCTATACATGACATGGCAGT 59.561 45.455 19.39 8.13 31.98 4.40
196 197 3.130280 TGGCTATACATGACATGGCAG 57.870 47.619 19.39 13.04 31.98 4.85
197 198 3.072768 TGATGGCTATACATGACATGGCA 59.927 43.478 19.39 2.18 31.98 4.92
198 199 3.678289 TGATGGCTATACATGACATGGC 58.322 45.455 19.39 12.24 33.60 4.40
199 200 5.742063 AGATGATGGCTATACATGACATGG 58.258 41.667 19.39 2.95 33.60 3.66
200 201 9.694137 CTATAGATGATGGCTATACATGACATG 57.306 37.037 14.02 14.02 31.43 3.21
201 202 9.431690 ACTATAGATGATGGCTATACATGACAT 57.568 33.333 6.78 0.00 31.43 3.06
202 203 8.829373 ACTATAGATGATGGCTATACATGACA 57.171 34.615 6.78 0.00 31.43 3.58
203 204 8.907885 TGACTATAGATGATGGCTATACATGAC 58.092 37.037 6.78 0.00 31.43 3.06
204 205 8.907885 GTGACTATAGATGATGGCTATACATGA 58.092 37.037 6.78 0.00 31.43 3.07
205 206 8.911965 AGTGACTATAGATGATGGCTATACATG 58.088 37.037 6.78 0.00 31.43 3.21
206 207 9.130661 GAGTGACTATAGATGATGGCTATACAT 57.869 37.037 6.78 0.00 31.43 2.29
207 208 8.109634 TGAGTGACTATAGATGATGGCTATACA 58.890 37.037 6.78 0.00 31.43 2.29
208 209 8.512966 TGAGTGACTATAGATGATGGCTATAC 57.487 38.462 6.78 0.00 31.43 1.47
210 211 9.880254 ATATGAGTGACTATAGATGATGGCTAT 57.120 33.333 6.78 0.00 33.42 2.97
212 213 9.353431 CTATATGAGTGACTATAGATGATGGCT 57.647 37.037 6.78 0.00 32.12 4.75
213 214 9.130661 ACTATATGAGTGACTATAGATGATGGC 57.869 37.037 6.78 0.00 36.87 4.40
234 235 8.636213 GCCAACCTTATAACTCACACTACTATA 58.364 37.037 0.00 0.00 0.00 1.31
235 236 7.344871 AGCCAACCTTATAACTCACACTACTAT 59.655 37.037 0.00 0.00 0.00 2.12
236 237 6.666546 AGCCAACCTTATAACTCACACTACTA 59.333 38.462 0.00 0.00 0.00 1.82
237 238 5.484290 AGCCAACCTTATAACTCACACTACT 59.516 40.000 0.00 0.00 0.00 2.57
238 239 5.731591 AGCCAACCTTATAACTCACACTAC 58.268 41.667 0.00 0.00 0.00 2.73
239 240 7.670605 ATAGCCAACCTTATAACTCACACTA 57.329 36.000 0.00 0.00 0.00 2.74
240 241 4.910458 AGCCAACCTTATAACTCACACT 57.090 40.909 0.00 0.00 0.00 3.55
241 242 8.904099 ATTATAGCCAACCTTATAACTCACAC 57.096 34.615 0.00 0.00 0.00 3.82
318 319 6.288294 AGCTATATGCGGATTTGTAGACAAA 58.712 36.000 10.10 10.10 46.91 2.83
328 329 7.866003 GCAAGAGCCTAGCTATATGCGGATT 62.866 48.000 0.00 0.00 39.88 3.01
329 330 6.476731 GCAAGAGCCTAGCTATATGCGGAT 62.477 50.000 0.00 0.00 39.88 4.18
330 331 5.234474 GCAAGAGCCTAGCTATATGCGGA 62.234 52.174 0.00 0.00 39.88 5.54
331 332 2.992997 GCAAGAGCCTAGCTATATGCGG 60.993 54.545 0.00 0.00 39.88 5.69
332 333 2.266554 GCAAGAGCCTAGCTATATGCG 58.733 52.381 0.00 0.00 39.88 4.73
333 334 3.325293 TGCAAGAGCCTAGCTATATGC 57.675 47.619 11.58 11.58 39.88 3.14
334 335 5.082251 TCATGCAAGAGCCTAGCTATATG 57.918 43.478 0.00 0.00 39.88 1.78
335 336 5.752036 TTCATGCAAGAGCCTAGCTATAT 57.248 39.130 0.00 0.00 39.88 0.86
336 337 5.070981 ACTTTCATGCAAGAGCCTAGCTATA 59.929 40.000 12.25 0.00 39.88 1.31
337 338 4.141528 ACTTTCATGCAAGAGCCTAGCTAT 60.142 41.667 12.25 0.00 39.88 2.97
338 339 3.198635 ACTTTCATGCAAGAGCCTAGCTA 59.801 43.478 12.25 0.00 39.88 3.32
339 340 2.026449 ACTTTCATGCAAGAGCCTAGCT 60.026 45.455 12.25 0.00 43.88 3.32
340 341 2.354199 GACTTTCATGCAAGAGCCTAGC 59.646 50.000 12.25 0.00 41.13 3.42
341 342 2.941720 GGACTTTCATGCAAGAGCCTAG 59.058 50.000 12.25 0.00 41.13 3.02
342 343 2.305635 TGGACTTTCATGCAAGAGCCTA 59.694 45.455 12.25 2.22 41.13 3.93
343 344 1.074405 TGGACTTTCATGCAAGAGCCT 59.926 47.619 12.25 0.00 41.13 4.58
344 345 1.200948 GTGGACTTTCATGCAAGAGCC 59.799 52.381 12.25 12.21 41.13 4.70
345 346 2.157738 AGTGGACTTTCATGCAAGAGC 58.842 47.619 12.25 3.52 42.57 4.09
346 347 4.843220 AAAGTGGACTTTCATGCAAGAG 57.157 40.909 12.25 0.00 42.02 2.85
357 358 5.762279 TGAAAAGGTAAGGAAAGTGGACTT 58.238 37.500 0.00 0.00 37.91 3.01
358 359 5.382664 TGAAAAGGTAAGGAAAGTGGACT 57.617 39.130 0.00 0.00 0.00 3.85
359 360 6.004574 AGATGAAAAGGTAAGGAAAGTGGAC 58.995 40.000 0.00 0.00 0.00 4.02
360 361 6.044404 AGAGATGAAAAGGTAAGGAAAGTGGA 59.956 38.462 0.00 0.00 0.00 4.02
361 362 6.241645 AGAGATGAAAAGGTAAGGAAAGTGG 58.758 40.000 0.00 0.00 0.00 4.00
362 363 7.164803 AGAGAGATGAAAAGGTAAGGAAAGTG 58.835 38.462 0.00 0.00 0.00 3.16
363 364 7.323052 AGAGAGATGAAAAGGTAAGGAAAGT 57.677 36.000 0.00 0.00 0.00 2.66
364 365 6.821160 GGAGAGAGATGAAAAGGTAAGGAAAG 59.179 42.308 0.00 0.00 0.00 2.62
365 366 6.502158 AGGAGAGAGATGAAAAGGTAAGGAAA 59.498 38.462 0.00 0.00 0.00 3.13
366 367 6.026186 AGGAGAGAGATGAAAAGGTAAGGAA 58.974 40.000 0.00 0.00 0.00 3.36
367 368 5.594777 AGGAGAGAGATGAAAAGGTAAGGA 58.405 41.667 0.00 0.00 0.00 3.36
368 369 5.163353 GGAGGAGAGAGATGAAAAGGTAAGG 60.163 48.000 0.00 0.00 0.00 2.69
369 370 5.423610 TGGAGGAGAGAGATGAAAAGGTAAG 59.576 44.000 0.00 0.00 0.00 2.34
370 371 5.187967 GTGGAGGAGAGAGATGAAAAGGTAA 59.812 44.000 0.00 0.00 0.00 2.85
371 372 4.712337 GTGGAGGAGAGAGATGAAAAGGTA 59.288 45.833 0.00 0.00 0.00 3.08
372 373 3.517500 GTGGAGGAGAGAGATGAAAAGGT 59.482 47.826 0.00 0.00 0.00 3.50
373 374 3.517100 TGTGGAGGAGAGAGATGAAAAGG 59.483 47.826 0.00 0.00 0.00 3.11
374 375 4.815533 TGTGGAGGAGAGAGATGAAAAG 57.184 45.455 0.00 0.00 0.00 2.27
375 376 6.687393 GCATATGTGGAGGAGAGAGATGAAAA 60.687 42.308 4.29 0.00 0.00 2.29
376 377 5.221601 GCATATGTGGAGGAGAGAGATGAAA 60.222 44.000 4.29 0.00 0.00 2.69
377 378 4.282957 GCATATGTGGAGGAGAGAGATGAA 59.717 45.833 4.29 0.00 0.00 2.57
378 379 3.831333 GCATATGTGGAGGAGAGAGATGA 59.169 47.826 4.29 0.00 0.00 2.92
379 380 3.577415 TGCATATGTGGAGGAGAGAGATG 59.423 47.826 4.29 0.00 0.00 2.90
380 381 3.854437 TGCATATGTGGAGGAGAGAGAT 58.146 45.455 4.29 0.00 0.00 2.75
381 382 3.319031 TGCATATGTGGAGGAGAGAGA 57.681 47.619 4.29 0.00 0.00 3.10
382 383 4.412796 TTTGCATATGTGGAGGAGAGAG 57.587 45.455 4.29 0.00 0.00 3.20
383 384 4.842531 TTTTGCATATGTGGAGGAGAGA 57.157 40.909 4.29 0.00 0.00 3.10
384 385 4.201851 CGTTTTTGCATATGTGGAGGAGAG 60.202 45.833 4.29 0.00 0.00 3.20
385 386 3.689161 CGTTTTTGCATATGTGGAGGAGA 59.311 43.478 4.29 0.00 0.00 3.71
386 387 3.440173 ACGTTTTTGCATATGTGGAGGAG 59.560 43.478 4.29 0.00 0.00 3.69
387 388 3.417101 ACGTTTTTGCATATGTGGAGGA 58.583 40.909 4.29 0.00 0.00 3.71
388 389 3.190327 TGACGTTTTTGCATATGTGGAGG 59.810 43.478 4.29 0.00 0.00 4.30
389 390 4.418013 TGACGTTTTTGCATATGTGGAG 57.582 40.909 4.29 0.00 0.00 3.86
390 391 4.217334 ACATGACGTTTTTGCATATGTGGA 59.783 37.500 0.00 0.00 0.00 4.02
391 392 4.484236 ACATGACGTTTTTGCATATGTGG 58.516 39.130 0.00 0.00 0.00 4.17
392 393 5.224925 CGTACATGACGTTTTTGCATATGTG 59.775 40.000 0.00 0.00 46.86 3.21
393 394 5.320723 CGTACATGACGTTTTTGCATATGT 58.679 37.500 0.00 0.00 46.86 2.29
394 395 5.831764 CGTACATGACGTTTTTGCATATG 57.168 39.130 0.00 0.00 46.86 1.78
407 408 2.325761 CTTATAGCCCGCGTACATGAC 58.674 52.381 4.92 0.00 0.00 3.06
408 409 1.336517 GCTTATAGCCCGCGTACATGA 60.337 52.381 4.92 0.00 34.48 3.07
409 410 1.068474 GCTTATAGCCCGCGTACATG 58.932 55.000 4.92 0.00 34.48 3.21
410 411 3.509388 GCTTATAGCCCGCGTACAT 57.491 52.632 4.92 0.00 34.48 2.29
420 421 9.262358 GCAAGTATATAATAGTGGGCTTATAGC 57.738 37.037 0.00 0.00 41.46 2.97
423 424 9.273137 AGAGCAAGTATATAATAGTGGGCTTAT 57.727 33.333 0.00 0.00 0.00 1.73
424 425 8.666129 AGAGCAAGTATATAATAGTGGGCTTA 57.334 34.615 0.00 0.00 0.00 3.09
425 426 7.560796 AGAGCAAGTATATAATAGTGGGCTT 57.439 36.000 0.00 0.00 0.00 4.35
426 427 8.666129 TTAGAGCAAGTATATAATAGTGGGCT 57.334 34.615 0.00 0.00 0.00 5.19
427 428 9.372369 CTTTAGAGCAAGTATATAATAGTGGGC 57.628 37.037 0.00 0.00 0.00 5.36
451 452 9.780186 GGATACAGTAAGTTTATGGATTAGCTT 57.220 33.333 0.00 0.00 0.00 3.74
452 453 8.376270 GGGATACAGTAAGTTTATGGATTAGCT 58.624 37.037 0.00 0.00 39.74 3.32
453 454 8.154856 TGGGATACAGTAAGTTTATGGATTAGC 58.845 37.037 0.00 0.00 39.74 3.09
456 457 9.762381 TTTTGGGATACAGTAAGTTTATGGATT 57.238 29.630 0.00 0.00 39.74 3.01
457 458 9.185680 GTTTTGGGATACAGTAAGTTTATGGAT 57.814 33.333 0.00 0.00 39.74 3.41
458 459 8.164733 TGTTTTGGGATACAGTAAGTTTATGGA 58.835 33.333 0.00 0.00 39.74 3.41
459 460 8.343168 TGTTTTGGGATACAGTAAGTTTATGG 57.657 34.615 0.00 0.00 39.74 2.74
469 470 8.463607 CGGTAATATTTTGTTTTGGGATACAGT 58.536 33.333 0.00 0.00 39.74 3.55
470 471 7.434013 GCGGTAATATTTTGTTTTGGGATACAG 59.566 37.037 0.00 0.00 39.74 2.74
471 472 7.122948 AGCGGTAATATTTTGTTTTGGGATACA 59.877 33.333 0.00 0.00 39.74 2.29
472 473 7.434013 CAGCGGTAATATTTTGTTTTGGGATAC 59.566 37.037 0.00 0.00 0.00 2.24
473 474 7.416890 CCAGCGGTAATATTTTGTTTTGGGATA 60.417 37.037 0.00 0.00 0.00 2.59
474 475 6.337356 CAGCGGTAATATTTTGTTTTGGGAT 58.663 36.000 0.00 0.00 0.00 3.85
475 476 5.336849 CCAGCGGTAATATTTTGTTTTGGGA 60.337 40.000 0.00 0.00 0.00 4.37
476 477 4.867608 CCAGCGGTAATATTTTGTTTTGGG 59.132 41.667 0.00 0.00 0.00 4.12
477 478 5.474825 ACCAGCGGTAATATTTTGTTTTGG 58.525 37.500 0.00 0.00 32.11 3.28
478 479 8.696410 ATAACCAGCGGTAATATTTTGTTTTG 57.304 30.769 0.00 0.00 33.12 2.44
480 481 9.398538 TCTATAACCAGCGGTAATATTTTGTTT 57.601 29.630 0.00 0.00 33.12 2.83
481 482 8.967664 TCTATAACCAGCGGTAATATTTTGTT 57.032 30.769 0.00 0.00 33.12 2.83
482 483 8.967664 TTCTATAACCAGCGGTAATATTTTGT 57.032 30.769 0.00 0.00 33.12 2.83
489 490 9.841295 TCTTATTTTTCTATAACCAGCGGTAAT 57.159 29.630 0.62 0.00 33.12 1.89
490 491 9.669887 TTCTTATTTTTCTATAACCAGCGGTAA 57.330 29.630 0.62 0.00 33.12 2.85
491 492 9.669887 TTTCTTATTTTTCTATAACCAGCGGTA 57.330 29.630 0.62 0.00 33.12 4.02
492 493 8.570068 TTTCTTATTTTTCTATAACCAGCGGT 57.430 30.769 0.00 0.00 37.65 5.68
493 494 9.285770 GTTTTCTTATTTTTCTATAACCAGCGG 57.714 33.333 0.00 0.00 0.00 5.52
494 495 9.834628 TGTTTTCTTATTTTTCTATAACCAGCG 57.165 29.630 0.00 0.00 0.00 5.18
504 505 9.893305 CTACACGGAATGTTTTCTTATTTTTCT 57.107 29.630 0.00 0.00 43.19 2.52
505 506 9.673454 ACTACACGGAATGTTTTCTTATTTTTC 57.327 29.630 0.00 0.00 43.19 2.29
559 560 3.332187 TGGGTGATGGGATCTTTTGTACA 59.668 43.478 0.00 0.00 0.00 2.90
560 561 3.963129 TGGGTGATGGGATCTTTTGTAC 58.037 45.455 0.00 0.00 0.00 2.90
561 562 4.535781 CATGGGTGATGGGATCTTTTGTA 58.464 43.478 0.00 0.00 0.00 2.41
562 563 3.368248 CATGGGTGATGGGATCTTTTGT 58.632 45.455 0.00 0.00 0.00 2.83
563 564 2.101917 GCATGGGTGATGGGATCTTTTG 59.898 50.000 0.00 0.00 31.99 2.44
564 565 2.292389 TGCATGGGTGATGGGATCTTTT 60.292 45.455 0.00 0.00 31.99 2.27
565 566 1.288633 TGCATGGGTGATGGGATCTTT 59.711 47.619 0.00 0.00 31.99 2.52
566 567 0.928505 TGCATGGGTGATGGGATCTT 59.071 50.000 0.00 0.00 31.99 2.40
567 568 0.477204 CTGCATGGGTGATGGGATCT 59.523 55.000 0.00 0.00 31.99 2.75
568 569 0.475475 TCTGCATGGGTGATGGGATC 59.525 55.000 0.00 0.00 31.99 3.36
602 603 3.066203 AGGCGTAAATATTTGGCCTTTCG 59.934 43.478 28.34 15.22 44.01 3.46
635 636 9.185192 CTCTAATCAATTTGCTCGTTTTCTTTT 57.815 29.630 0.00 0.00 0.00 2.27
636 637 8.567948 TCTCTAATCAATTTGCTCGTTTTCTTT 58.432 29.630 0.00 0.00 0.00 2.52
895 933 0.037790 GAGAGTGGTGACTGACTGCC 60.038 60.000 0.00 0.00 30.16 4.85
897 935 1.000283 GGTGAGAGTGGTGACTGACTG 60.000 57.143 0.00 0.00 30.16 3.51
898 936 1.333177 GGTGAGAGTGGTGACTGACT 58.667 55.000 0.00 0.00 30.16 3.41
899 937 0.318762 GGGTGAGAGTGGTGACTGAC 59.681 60.000 0.00 0.00 30.16 3.51
900 938 0.105709 TGGGTGAGAGTGGTGACTGA 60.106 55.000 0.00 0.00 30.16 3.41
918 975 0.102300 TATCAGTCGATGGGTGCGTG 59.898 55.000 0.00 0.00 32.73 5.34
951 1008 3.126514 CACTACCCGACACTACACTACTG 59.873 52.174 0.00 0.00 0.00 2.74
1715 1799 2.713967 GGTACGCGCCTCCTTACCA 61.714 63.158 5.73 0.00 35.08 3.25
1809 1902 4.788925 TGAGAGAAAAAGGGGTGAAGAA 57.211 40.909 0.00 0.00 0.00 2.52
1815 1908 6.026186 TCTAGAGATTGAGAGAAAAAGGGGT 58.974 40.000 0.00 0.00 0.00 4.95
1817 1910 7.181569 ACTCTAGAGATTGAGAGAAAAAGGG 57.818 40.000 26.57 0.00 41.55 3.95
1857 1953 5.507985 CCAGAAGGTCCAAAACACTTCAATC 60.508 44.000 0.00 0.00 37.51 2.67
1912 2008 3.075307 TGCCAAAGCTAGTGAAACTGGG 61.075 50.000 0.00 0.00 46.68 4.45
2400 2511 1.073199 ACCCCAGGTCAAAAGCTCG 59.927 57.895 0.00 0.00 0.00 5.03
2401 2512 0.895559 CCACCCCAGGTCAAAAGCTC 60.896 60.000 0.00 0.00 31.02 4.09
2402 2513 1.153756 CCACCCCAGGTCAAAAGCT 59.846 57.895 0.00 0.00 31.02 3.74
2403 2514 0.759060 AACCACCCCAGGTCAAAAGC 60.759 55.000 0.00 0.00 42.25 3.51
2404 2515 1.039856 CAACCACCCCAGGTCAAAAG 58.960 55.000 0.00 0.00 42.25 2.27
2405 2516 0.397816 CCAACCACCCCAGGTCAAAA 60.398 55.000 0.00 0.00 42.25 2.44
2406 2517 1.231641 CCAACCACCCCAGGTCAAA 59.768 57.895 0.00 0.00 42.25 2.69
2419 2530 0.898326 ATCCTTTTCCACGGCCAACC 60.898 55.000 2.24 0.00 0.00 3.77
2483 2594 2.449464 CAGCTGATCCCCAAAACATCA 58.551 47.619 8.42 0.00 0.00 3.07
2484 2595 1.753073 CCAGCTGATCCCCAAAACATC 59.247 52.381 17.39 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.