Multiple sequence alignment - TraesCS2D01G396900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G396900 chr2D 100.000 2952 0 0 1 2952 508058173 508055222 0.000000e+00 5452.0
1 TraesCS2D01G396900 chr2D 100.000 2334 0 0 3182 5515 508054992 508052659 0.000000e+00 4311.0
2 TraesCS2D01G396900 chr2B 93.291 1416 86 7 3322 4730 596928408 596926995 0.000000e+00 2080.0
3 TraesCS2D01G396900 chr2B 90.797 1456 68 23 1018 2438 596930753 596929329 0.000000e+00 1886.0
4 TraesCS2D01G396900 chr2B 91.706 844 36 13 170 983 596931595 596930756 0.000000e+00 1140.0
5 TraesCS2D01G396900 chr2B 89.826 806 67 7 4722 5515 596926957 596926155 0.000000e+00 1020.0
6 TraesCS2D01G396900 chr2B 96.296 81 3 0 1 81 596931729 596931649 3.470000e-27 134.0
7 TraesCS2D01G396900 chr2B 98.077 52 1 0 77 128 596931629 596931578 2.120000e-14 91.6
8 TraesCS2D01G396900 chr2A 93.283 1191 77 2 3308 4496 652530950 652529761 0.000000e+00 1753.0
9 TraesCS2D01G396900 chr2A 92.685 998 38 12 1018 1999 652533857 652532879 0.000000e+00 1406.0
10 TraesCS2D01G396900 chr2A 89.648 966 72 15 4518 5475 652529772 652528827 0.000000e+00 1205.0
11 TraesCS2D01G396900 chr2A 92.361 720 47 7 2118 2833 652532164 652531449 0.000000e+00 1018.0
12 TraesCS2D01G396900 chr2A 91.549 355 20 7 170 518 652535733 652535383 1.070000e-131 481.0
13 TraesCS2D01G396900 chr2A 86.957 253 9 7 755 983 652534112 652533860 4.240000e-66 263.0
14 TraesCS2D01G396900 chr2A 86.000 200 12 1 557 756 652535385 652535202 3.370000e-47 200.0
15 TraesCS2D01G396900 chr2A 91.736 121 10 0 2832 2952 652531415 652531295 9.500000e-38 169.0
16 TraesCS2D01G396900 chr2A 87.586 145 1 1 1 128 652535860 652535716 9.570000e-33 152.0
17 TraesCS2D01G396900 chr2A 96.341 82 2 1 5434 5515 652528826 652528746 3.470000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G396900 chr2D 508052659 508058173 5514 True 4881.5 5452 100.000000 1 5515 2 chr2D.!!$R1 5514
1 TraesCS2D01G396900 chr2B 596926155 596931729 5574 True 1058.6 2080 93.332167 1 5515 6 chr2B.!!$R1 5514
2 TraesCS2D01G396900 chr2A 652528746 652535860 7114 True 678.1 1753 90.814600 1 5515 10 chr2A.!!$R1 5514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 197 0.098376 CGGCTTCTGCATCTGAAAGC 59.902 55.0 3.07 3.07 41.91 3.51 F
1995 3186 0.035630 AAGACCAGGCTAGCTGCTTG 60.036 55.0 15.72 7.19 46.70 4.01 F
2399 4201 0.038310 AGAAAAAGGAGCGGGGGAAG 59.962 55.0 0.00 0.00 0.00 3.46 F
3215 5106 0.839946 AGCGTTGGAGATGCCCTTAT 59.160 50.0 0.00 0.00 41.38 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 3556 0.314618 TGCAGCACGTACGGTTAGAA 59.685 50.0 21.06 0.0 0.00 2.10 R
3194 5085 0.107654 AAGGGCATCTCCAACGCTAC 60.108 55.0 0.00 0.0 36.21 3.58 R
3343 5270 0.654683 CCGAGTCTACGTACCCTTCG 59.345 60.0 0.00 0.0 0.00 3.79 R
5112 7098 0.105593 ATGAGGCGGCTCATGTGTAG 59.894 55.0 42.97 0.0 41.95 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 150 2.177038 CGAAGCGAGACGTGAGCT 59.823 61.111 0.00 0.00 43.90 4.09
129 154 3.290776 AGCGAGACGTGAGCTTTTT 57.709 47.368 0.00 0.00 38.13 1.94
153 178 7.786046 TTTTAAGAAAAGGAAGAATACCCCC 57.214 36.000 0.00 0.00 0.00 5.40
154 179 3.646736 AGAAAAGGAAGAATACCCCCG 57.353 47.619 0.00 0.00 0.00 5.73
155 180 2.241430 AGAAAAGGAAGAATACCCCCGG 59.759 50.000 0.00 0.00 0.00 5.73
156 181 0.257905 AAAGGAAGAATACCCCCGGC 59.742 55.000 0.00 0.00 0.00 6.13
157 182 0.623617 AAGGAAGAATACCCCCGGCT 60.624 55.000 0.00 0.00 0.00 5.52
158 183 0.623617 AGGAAGAATACCCCCGGCTT 60.624 55.000 0.00 0.00 0.00 4.35
159 184 0.179026 GGAAGAATACCCCCGGCTTC 60.179 60.000 0.00 1.05 35.44 3.86
160 185 0.837940 GAAGAATACCCCCGGCTTCT 59.162 55.000 0.00 0.00 33.87 2.85
161 186 0.546598 AAGAATACCCCCGGCTTCTG 59.453 55.000 0.00 0.00 31.34 3.02
162 187 1.526225 GAATACCCCCGGCTTCTGC 60.526 63.158 0.00 0.00 38.76 4.26
163 188 2.265467 GAATACCCCCGGCTTCTGCA 62.265 60.000 0.00 0.00 41.91 4.41
164 189 1.645402 AATACCCCCGGCTTCTGCAT 61.645 55.000 0.00 0.00 41.91 3.96
165 190 2.056906 ATACCCCCGGCTTCTGCATC 62.057 60.000 0.00 0.00 41.91 3.91
166 191 3.801997 CCCCCGGCTTCTGCATCT 61.802 66.667 0.00 0.00 41.91 2.90
167 192 2.515523 CCCCGGCTTCTGCATCTG 60.516 66.667 0.00 0.00 41.91 2.90
168 193 2.586245 CCCGGCTTCTGCATCTGA 59.414 61.111 0.00 0.00 41.91 3.27
169 194 1.078214 CCCGGCTTCTGCATCTGAA 60.078 57.895 0.00 0.00 41.91 3.02
170 195 0.677731 CCCGGCTTCTGCATCTGAAA 60.678 55.000 0.00 0.00 41.91 2.69
171 196 0.731417 CCGGCTTCTGCATCTGAAAG 59.269 55.000 0.00 0.00 41.91 2.62
172 197 0.098376 CGGCTTCTGCATCTGAAAGC 59.902 55.000 3.07 3.07 41.91 3.51
173 198 1.461559 GGCTTCTGCATCTGAAAGCT 58.538 50.000 9.98 0.00 41.91 3.74
174 199 1.132643 GGCTTCTGCATCTGAAAGCTG 59.867 52.381 9.98 8.04 41.91 4.24
175 200 2.082231 GCTTCTGCATCTGAAAGCTGA 58.918 47.619 9.74 9.74 39.41 4.26
176 201 2.096174 GCTTCTGCATCTGAAAGCTGAG 59.904 50.000 12.29 9.40 39.36 3.35
226 251 3.553828 TTGAGTTCGAAAGTTGGAGGT 57.446 42.857 0.00 0.00 0.00 3.85
249 275 1.842562 CATCTTCCATGGACAGAGGGT 59.157 52.381 15.91 3.65 0.00 4.34
262 288 1.536662 GAGGGTGGTGGTCCTGTCT 60.537 63.158 0.00 0.00 32.74 3.41
302 329 2.569853 TCGGGCTATGGAAGTCTTTTGA 59.430 45.455 0.00 0.00 0.00 2.69
337 364 0.176910 TCGATGCATGTTCGCCCTAA 59.823 50.000 2.46 0.00 36.56 2.69
503 537 8.642885 CACTGATAAGCTTATATAGTTTCTGCG 58.357 37.037 23.32 13.23 0.00 5.18
523 557 4.001652 GCGGTTCTAGCTAATTAATCCCC 58.998 47.826 0.00 0.00 0.00 4.81
532 566 8.065007 TCTAGCTAATTAATCCCCCACAAAAAT 58.935 33.333 0.00 0.00 0.00 1.82
604 649 1.757682 ACGGACACACCACATGTTTT 58.242 45.000 0.00 0.00 40.64 2.43
672 720 1.741145 ACCCAGTGAAACACGACAAAC 59.259 47.619 0.00 0.00 41.43 2.93
792 1931 0.524862 GCAAACATCCTCTGCACCTG 59.475 55.000 0.00 0.00 36.09 4.00
831 1990 8.536340 AAATTTTACTACACTACCACCCAAAA 57.464 30.769 0.00 0.00 0.00 2.44
872 2033 1.053048 CTAACTCGTGCGTGTCACAG 58.947 55.000 3.42 0.00 45.92 3.66
942 2104 1.142870 TCTGTTCACCACCCTCCAAAG 59.857 52.381 0.00 0.00 0.00 2.77
943 2105 0.184933 TGTTCACCACCCTCCAAAGG 59.815 55.000 0.00 0.00 42.95 3.11
949 2118 1.903404 CACCCTCCAAAGGCCACAC 60.903 63.158 5.01 0.00 41.85 3.82
972 2141 0.257328 TCTCGTCTCCTCTGCTCCAT 59.743 55.000 0.00 0.00 0.00 3.41
983 2152 4.477413 GCTCCATCAGCCATCAGG 57.523 61.111 0.00 0.00 43.17 3.86
984 2153 1.228184 GCTCCATCAGCCATCAGGG 60.228 63.158 0.00 0.00 43.17 4.45
994 2163 3.091318 CCATCAGGGCACAAGCTAG 57.909 57.895 0.00 0.00 41.70 3.42
995 2164 1.099879 CCATCAGGGCACAAGCTAGC 61.100 60.000 6.62 6.62 41.70 3.42
1000 2169 3.724494 GGCACAAGCTAGCCGATC 58.276 61.111 12.13 0.00 41.70 3.69
1001 2170 2.240500 GGCACAAGCTAGCCGATCG 61.241 63.158 12.13 8.51 41.70 3.69
1002 2171 1.519455 GCACAAGCTAGCCGATCGT 60.519 57.895 15.09 0.00 37.91 3.73
1003 2172 1.084370 GCACAAGCTAGCCGATCGTT 61.084 55.000 15.09 4.44 37.91 3.85
1004 2173 1.801395 GCACAAGCTAGCCGATCGTTA 60.801 52.381 15.09 5.44 37.91 3.18
1005 2174 2.743938 CACAAGCTAGCCGATCGTTAT 58.256 47.619 15.09 1.68 0.00 1.89
1006 2175 3.855895 GCACAAGCTAGCCGATCGTTATA 60.856 47.826 15.09 2.85 37.91 0.98
1007 2176 4.486090 CACAAGCTAGCCGATCGTTATAT 58.514 43.478 15.09 0.00 0.00 0.86
1008 2177 4.923871 CACAAGCTAGCCGATCGTTATATT 59.076 41.667 15.09 0.00 0.00 1.28
1009 2178 5.061064 CACAAGCTAGCCGATCGTTATATTC 59.939 44.000 15.09 0.00 0.00 1.75
1010 2179 5.047943 ACAAGCTAGCCGATCGTTATATTCT 60.048 40.000 15.09 0.00 0.00 2.40
1011 2180 5.238006 AGCTAGCCGATCGTTATATTCTC 57.762 43.478 15.09 0.00 0.00 2.87
1012 2181 4.944930 AGCTAGCCGATCGTTATATTCTCT 59.055 41.667 15.09 0.00 0.00 3.10
1013 2182 5.031578 GCTAGCCGATCGTTATATTCTCTG 58.968 45.833 15.09 0.00 0.00 3.35
1014 2183 4.442375 AGCCGATCGTTATATTCTCTGG 57.558 45.455 15.09 0.00 0.00 3.86
1015 2184 3.193691 AGCCGATCGTTATATTCTCTGGG 59.806 47.826 15.09 0.00 0.00 4.45
1016 2185 3.192844 GCCGATCGTTATATTCTCTGGGA 59.807 47.826 15.09 0.00 0.00 4.37
1022 2191 4.038042 TCGTTATATTCTCTGGGAGTGCAG 59.962 45.833 0.00 0.00 0.00 4.41
1031 2200 0.819259 TGGGAGTGCAGTTCAGTTGC 60.819 55.000 1.33 0.00 41.86 4.17
1189 2358 3.450115 GCCGAGCTCCGTACCACT 61.450 66.667 8.47 0.00 36.31 4.00
1521 2702 1.625818 AGTGCACTCTTTTCCCGAGAT 59.374 47.619 15.25 0.00 32.87 2.75
1531 2712 3.334583 TTTCCCGAGATTTCACCTCAG 57.665 47.619 0.00 0.00 0.00 3.35
1537 2718 2.757868 CGAGATTTCACCTCAGGTCTCT 59.242 50.000 0.00 0.00 31.02 3.10
1538 2719 3.948473 CGAGATTTCACCTCAGGTCTCTA 59.052 47.826 0.00 0.00 31.02 2.43
1539 2720 4.399618 CGAGATTTCACCTCAGGTCTCTAA 59.600 45.833 0.00 0.00 31.02 2.10
1540 2721 5.068460 CGAGATTTCACCTCAGGTCTCTAAT 59.932 44.000 0.00 0.00 31.02 1.73
1541 2722 6.406400 CGAGATTTCACCTCAGGTCTCTAATT 60.406 42.308 0.00 0.00 31.02 1.40
1542 2723 6.883744 AGATTTCACCTCAGGTCTCTAATTC 58.116 40.000 0.00 0.00 31.02 2.17
1543 2724 6.671779 AGATTTCACCTCAGGTCTCTAATTCT 59.328 38.462 0.00 0.00 31.02 2.40
1544 2725 5.667539 TTCACCTCAGGTCTCTAATTCTG 57.332 43.478 0.00 0.00 31.02 3.02
1545 2726 4.678256 TCACCTCAGGTCTCTAATTCTGT 58.322 43.478 0.00 0.00 31.02 3.41
1550 2731 5.988561 CCTCAGGTCTCTAATTCTGTATTGC 59.011 44.000 0.00 0.00 0.00 3.56
1554 2735 6.481644 CAGGTCTCTAATTCTGTATTGCCTTC 59.518 42.308 0.00 0.00 0.00 3.46
1565 2746 3.134623 TGTATTGCCTTCTCCGATCATGT 59.865 43.478 0.00 0.00 0.00 3.21
1566 2747 2.787473 TTGCCTTCTCCGATCATGTT 57.213 45.000 0.00 0.00 0.00 2.71
1567 2748 2.315925 TGCCTTCTCCGATCATGTTC 57.684 50.000 0.00 0.00 0.00 3.18
1581 2762 6.415280 CCGATCATGTTCTTCTTAGTCTAACG 59.585 42.308 2.44 0.00 0.00 3.18
1583 2764 8.121086 CGATCATGTTCTTCTTAGTCTAACGTA 58.879 37.037 0.00 0.00 0.00 3.57
1628 2809 0.808755 GACAATAACAGGTTGCGGGG 59.191 55.000 0.00 0.00 0.00 5.73
1730 2911 0.675837 AGGATGAAGACGACGACGGA 60.676 55.000 12.58 0.00 44.46 4.69
1934 3121 2.932614 AGTCTCGCACATGCTGATTTAC 59.067 45.455 1.82 1.63 39.32 2.01
1995 3186 0.035630 AAGACCAGGCTAGCTGCTTG 60.036 55.000 15.72 7.19 46.70 4.01
2008 3474 2.586357 GCTTGGGCGACTCGATCC 60.586 66.667 1.63 3.57 0.00 3.36
2014 3480 2.185494 GGCGACTCGATCCCGTAGT 61.185 63.158 1.63 0.00 37.05 2.73
2066 3556 1.223187 CAACGTTTTCTACCACGGCT 58.777 50.000 0.00 0.00 40.84 5.52
2087 3577 0.388134 CTAACCGTACGTGCTGCAGT 60.388 55.000 16.64 6.28 0.00 4.40
2116 3606 5.747565 GCAATTAAAGTTGCCTTTTGGTTC 58.252 37.500 2.89 0.00 46.69 3.62
2117 3607 5.558083 GCAATTAAAGTTGCCTTTTGGTTCG 60.558 40.000 2.89 0.00 46.69 3.95
2118 3608 4.722361 TTAAAGTTGCCTTTTGGTTCGT 57.278 36.364 0.00 0.00 41.18 3.85
2119 3609 5.831702 TTAAAGTTGCCTTTTGGTTCGTA 57.168 34.783 0.00 0.00 41.18 3.43
2200 3996 8.035394 CACTAATCAATGTAGGTCAAGTACAGT 58.965 37.037 0.00 0.00 33.94 3.55
2228 4024 3.983988 GCCCTGATCGATGTATATATGCG 59.016 47.826 0.54 0.00 0.00 4.73
2269 4065 6.696042 TTAGGCTATGGCTATGATAACCAA 57.304 37.500 0.00 0.00 40.30 3.67
2293 4089 3.118920 TGCCACGAATATATATCCGGTGG 60.119 47.826 22.96 22.96 0.00 4.61
2369 4165 3.186613 GTGCAAGTAAGGAACAGTGTAGC 59.813 47.826 0.00 0.00 0.00 3.58
2374 4170 5.388408 AGTAAGGAACAGTGTAGCAGTAC 57.612 43.478 0.00 0.00 0.00 2.73
2377 4173 4.682778 AGGAACAGTGTAGCAGTACAAA 57.317 40.909 0.00 0.00 40.94 2.83
2378 4174 4.632153 AGGAACAGTGTAGCAGTACAAAG 58.368 43.478 0.00 0.00 40.94 2.77
2380 4176 5.054477 GGAACAGTGTAGCAGTACAAAGAA 58.946 41.667 0.00 0.00 40.94 2.52
2381 4177 5.177696 GGAACAGTGTAGCAGTACAAAGAAG 59.822 44.000 0.00 0.00 40.94 2.85
2399 4201 0.038310 AGAAAAAGGAGCGGGGGAAG 59.962 55.000 0.00 0.00 0.00 3.46
2416 4218 3.047280 GCGTGACGTTGATGGCCA 61.047 61.111 8.56 8.56 0.00 5.36
2451 4253 2.198827 ATGGTTGCGTGGAGAATTGA 57.801 45.000 0.00 0.00 0.00 2.57
2452 4254 1.974265 TGGTTGCGTGGAGAATTGAA 58.026 45.000 0.00 0.00 0.00 2.69
2457 4259 4.498009 GGTTGCGTGGAGAATTGAATATGG 60.498 45.833 0.00 0.00 0.00 2.74
2503 4305 1.408822 GGGGCCAACTTGATTCTCGAT 60.409 52.381 4.39 0.00 0.00 3.59
2531 4333 3.446161 CCTACACCATCGGAAAGTACAGA 59.554 47.826 0.00 0.00 0.00 3.41
2553 4355 7.063544 ACAGAGCATGTCGTATTCTAAAGTTTC 59.936 37.037 0.00 0.00 37.75 2.78
2591 4393 3.202151 AGCGAAAAGGAGGGGAAATGATA 59.798 43.478 0.00 0.00 0.00 2.15
2595 4397 5.629133 CGAAAAGGAGGGGAAATGATAGACA 60.629 44.000 0.00 0.00 0.00 3.41
2680 4482 4.041840 TCCATCTGGTGCTCGTTCAGAG 62.042 54.545 0.00 0.00 40.32 3.35
2705 4507 4.340894 TCTTGCTTTAGCTTTGCATACG 57.659 40.909 8.41 0.00 42.66 3.06
2706 4508 3.751175 TCTTGCTTTAGCTTTGCATACGT 59.249 39.130 8.41 0.00 42.66 3.57
2707 4509 4.932799 TCTTGCTTTAGCTTTGCATACGTA 59.067 37.500 0.00 0.00 42.66 3.57
2727 4529 7.999699 ACGTATATATGTTAGTAGCGTTTCG 57.000 36.000 1.51 0.00 0.00 3.46
2742 4544 1.199327 GTTTCGTAGCTCAAAAGGGGC 59.801 52.381 0.00 0.00 0.00 5.80
2746 4548 2.438021 TCGTAGCTCAAAAGGGGCATAT 59.562 45.455 0.00 0.00 0.00 1.78
2747 4549 3.644265 TCGTAGCTCAAAAGGGGCATATA 59.356 43.478 0.00 0.00 0.00 0.86
2772 4575 3.307242 GGCTGTCGACTATGATTGTGTTC 59.693 47.826 17.92 0.00 0.00 3.18
2778 4581 7.375834 TGTCGACTATGATTGTGTTCTTTAGT 58.624 34.615 17.92 0.00 0.00 2.24
2811 4614 5.131594 TGCAGTTAACAATTTAGCATGCA 57.868 34.783 21.98 8.67 33.97 3.96
2814 4617 5.468592 CAGTTAACAATTTAGCATGCACCA 58.531 37.500 21.98 2.42 0.00 4.17
2830 4633 2.061773 CACCAGCTCGTTAAGTGTCAG 58.938 52.381 0.00 0.00 0.00 3.51
2855 4693 3.869912 GCAGTGAGTAAGGGCATCTTCAA 60.870 47.826 0.00 0.00 36.93 2.69
2857 4695 3.327757 AGTGAGTAAGGGCATCTTCAACA 59.672 43.478 0.00 0.00 36.93 3.33
2865 4703 1.398390 GGCATCTTCAACACGGATCAC 59.602 52.381 0.00 0.00 0.00 3.06
2868 4706 2.920724 TCTTCAACACGGATCACCAA 57.079 45.000 0.00 0.00 35.59 3.67
2871 4709 4.900684 TCTTCAACACGGATCACCAAATA 58.099 39.130 0.00 0.00 35.59 1.40
2879 4717 4.881273 CACGGATCACCAAATATTTCCTCA 59.119 41.667 0.00 0.00 35.59 3.86
2881 4719 5.104527 ACGGATCACCAAATATTTCCTCAGA 60.105 40.000 0.00 0.00 35.59 3.27
2882 4720 6.000219 CGGATCACCAAATATTTCCTCAGAT 59.000 40.000 0.00 0.00 35.59 2.90
2938 4776 4.039973 TCCTCAAATTACACGAACTGGTCT 59.960 41.667 0.00 0.00 0.00 3.85
2941 4779 2.094762 ATTACACGAACTGGTCTGGC 57.905 50.000 0.00 0.00 0.00 4.85
3215 5106 0.839946 AGCGTTGGAGATGCCCTTAT 59.160 50.000 0.00 0.00 41.38 1.73
3217 5108 1.604278 GCGTTGGAGATGCCCTTATTC 59.396 52.381 0.00 0.00 34.03 1.75
3219 5110 2.614057 CGTTGGAGATGCCCTTATTCAC 59.386 50.000 0.00 0.00 34.97 3.18
3261 5188 8.564574 CATGTTAAGTTATGCCGTAATATGGTT 58.435 33.333 0.00 0.00 0.00 3.67
3288 5215 3.248125 GGTACGTAGACTCGGATTCTCTG 59.752 52.174 0.68 0.00 34.94 3.35
3303 5230 5.397334 GGATTCTCTGGAGTTTTGGATAGCT 60.397 44.000 0.00 0.00 0.00 3.32
3304 5231 4.478206 TCTCTGGAGTTTTGGATAGCTG 57.522 45.455 0.00 0.00 0.00 4.24
3305 5232 4.096681 TCTCTGGAGTTTTGGATAGCTGA 58.903 43.478 0.00 0.00 0.00 4.26
3306 5233 4.532126 TCTCTGGAGTTTTGGATAGCTGAA 59.468 41.667 0.00 0.00 0.00 3.02
3307 5234 4.836825 TCTGGAGTTTTGGATAGCTGAAG 58.163 43.478 0.00 0.00 0.00 3.02
3308 5235 4.532126 TCTGGAGTTTTGGATAGCTGAAGA 59.468 41.667 0.00 0.00 0.00 2.87
3309 5236 4.579869 TGGAGTTTTGGATAGCTGAAGAC 58.420 43.478 0.00 0.00 0.00 3.01
3310 5237 4.287067 TGGAGTTTTGGATAGCTGAAGACT 59.713 41.667 0.00 0.00 0.00 3.24
3311 5238 5.221925 TGGAGTTTTGGATAGCTGAAGACTT 60.222 40.000 0.00 0.00 0.00 3.01
3312 5239 5.707764 GGAGTTTTGGATAGCTGAAGACTTT 59.292 40.000 0.00 0.00 0.00 2.66
3313 5240 6.879458 GGAGTTTTGGATAGCTGAAGACTTTA 59.121 38.462 0.00 0.00 0.00 1.85
3314 5241 7.554476 GGAGTTTTGGATAGCTGAAGACTTTAT 59.446 37.037 0.00 0.00 0.00 1.40
3315 5242 8.870075 AGTTTTGGATAGCTGAAGACTTTATT 57.130 30.769 0.00 0.00 0.00 1.40
3316 5243 9.959721 AGTTTTGGATAGCTGAAGACTTTATTA 57.040 29.630 0.00 0.00 0.00 0.98
3317 5244 9.989869 GTTTTGGATAGCTGAAGACTTTATTAC 57.010 33.333 0.00 0.00 0.00 1.89
3318 5245 8.420374 TTTGGATAGCTGAAGACTTTATTACG 57.580 34.615 0.00 0.00 0.00 3.18
3319 5246 7.108841 TGGATAGCTGAAGACTTTATTACGT 57.891 36.000 0.00 0.00 0.00 3.57
3320 5247 6.978659 TGGATAGCTGAAGACTTTATTACGTG 59.021 38.462 0.00 0.00 0.00 4.49
3321 5248 6.979238 GGATAGCTGAAGACTTTATTACGTGT 59.021 38.462 0.00 0.00 0.00 4.49
3322 5249 7.491696 GGATAGCTGAAGACTTTATTACGTGTT 59.508 37.037 0.00 0.00 0.00 3.32
3323 5250 9.512435 GATAGCTGAAGACTTTATTACGTGTTA 57.488 33.333 0.00 0.00 0.00 2.41
3324 5251 9.865321 ATAGCTGAAGACTTTATTACGTGTTAA 57.135 29.630 0.00 0.00 0.00 2.01
3325 5252 8.240883 AGCTGAAGACTTTATTACGTGTTAAG 57.759 34.615 0.00 0.00 0.00 1.85
3326 5253 7.871463 AGCTGAAGACTTTATTACGTGTTAAGT 59.129 33.333 0.00 2.50 0.00 2.24
3327 5254 8.493547 GCTGAAGACTTTATTACGTGTTAAGTT 58.506 33.333 0.00 0.00 0.00 2.66
3332 5259 9.649167 AGACTTTATTACGTGTTAAGTTATGCT 57.351 29.630 0.00 0.00 0.00 3.79
3333 5260 9.685005 GACTTTATTACGTGTTAAGTTATGCTG 57.315 33.333 0.00 0.00 0.00 4.41
3334 5261 9.211485 ACTTTATTACGTGTTAAGTTATGCTGT 57.789 29.630 0.00 0.00 0.00 4.40
3341 5268 8.138365 ACGTGTTAAGTTATGCTGTAATATGG 57.862 34.615 0.00 0.00 0.00 2.74
3342 5269 7.767198 ACGTGTTAAGTTATGCTGTAATATGGT 59.233 33.333 0.00 0.00 0.00 3.55
3343 5270 8.273557 CGTGTTAAGTTATGCTGTAATATGGTC 58.726 37.037 0.00 0.00 0.00 4.02
3344 5271 8.273557 GTGTTAAGTTATGCTGTAATATGGTCG 58.726 37.037 0.00 0.00 0.00 4.79
3345 5272 8.198778 TGTTAAGTTATGCTGTAATATGGTCGA 58.801 33.333 0.00 0.00 0.00 4.20
3346 5273 9.037737 GTTAAGTTATGCTGTAATATGGTCGAA 57.962 33.333 0.00 0.00 0.00 3.71
3347 5274 7.715265 AAGTTATGCTGTAATATGGTCGAAG 57.285 36.000 0.00 0.00 0.00 3.79
3348 5275 6.223852 AGTTATGCTGTAATATGGTCGAAGG 58.776 40.000 0.00 0.00 0.00 3.46
3349 5276 3.469008 TGCTGTAATATGGTCGAAGGG 57.531 47.619 0.00 0.00 0.00 3.95
3350 5277 2.769663 TGCTGTAATATGGTCGAAGGGT 59.230 45.455 0.00 0.00 0.00 4.34
3351 5278 3.962063 TGCTGTAATATGGTCGAAGGGTA 59.038 43.478 0.00 0.00 0.00 3.69
3352 5279 4.202182 TGCTGTAATATGGTCGAAGGGTAC 60.202 45.833 0.00 0.00 0.00 3.34
3353 5280 4.543692 CTGTAATATGGTCGAAGGGTACG 58.456 47.826 0.00 0.00 0.00 3.67
3354 5281 3.953612 TGTAATATGGTCGAAGGGTACGT 59.046 43.478 0.00 0.00 0.00 3.57
3355 5282 5.129634 TGTAATATGGTCGAAGGGTACGTA 58.870 41.667 0.00 0.00 0.00 3.57
3356 5283 4.843220 AATATGGTCGAAGGGTACGTAG 57.157 45.455 0.00 0.00 0.00 3.51
3357 5284 2.425143 ATGGTCGAAGGGTACGTAGA 57.575 50.000 0.00 0.00 0.00 2.59
3358 5285 1.453155 TGGTCGAAGGGTACGTAGAC 58.547 55.000 0.00 0.00 34.77 2.59
3359 5286 1.003580 TGGTCGAAGGGTACGTAGACT 59.996 52.381 0.00 0.00 35.46 3.24
3360 5287 1.668237 GGTCGAAGGGTACGTAGACTC 59.332 57.143 0.00 0.00 35.46 3.36
3361 5288 1.325943 GTCGAAGGGTACGTAGACTCG 59.674 57.143 0.00 2.79 33.50 4.18
3362 5289 0.654683 CGAAGGGTACGTAGACTCGG 59.345 60.000 0.00 0.00 34.94 4.63
3363 5290 1.740380 CGAAGGGTACGTAGACTCGGA 60.740 57.143 0.00 0.00 34.94 4.55
3364 5291 2.570135 GAAGGGTACGTAGACTCGGAT 58.430 52.381 0.00 0.00 34.94 4.18
3365 5292 2.725221 AGGGTACGTAGACTCGGATT 57.275 50.000 0.00 0.00 34.94 3.01
3366 5293 2.570135 AGGGTACGTAGACTCGGATTC 58.430 52.381 0.00 0.00 34.94 2.52
3367 5294 2.172293 AGGGTACGTAGACTCGGATTCT 59.828 50.000 0.00 3.27 34.94 2.40
3368 5295 3.389329 AGGGTACGTAGACTCGGATTCTA 59.611 47.826 0.00 1.33 34.94 2.10
3369 5296 4.041444 AGGGTACGTAGACTCGGATTCTAT 59.959 45.833 8.14 0.00 34.94 1.98
3370 5297 4.153835 GGGTACGTAGACTCGGATTCTATG 59.846 50.000 18.00 18.00 38.20 2.23
3371 5298 4.153835 GGTACGTAGACTCGGATTCTATGG 59.846 50.000 21.52 13.52 37.04 2.74
3372 5299 4.082665 ACGTAGACTCGGATTCTATGGA 57.917 45.455 21.52 0.00 37.04 3.41
3373 5300 4.066490 ACGTAGACTCGGATTCTATGGAG 58.934 47.826 21.52 11.33 37.04 3.86
3374 5301 4.066490 CGTAGACTCGGATTCTATGGAGT 58.934 47.826 13.85 0.00 42.11 3.85
3375 5302 4.515944 CGTAGACTCGGATTCTATGGAGTT 59.484 45.833 13.85 0.00 39.69 3.01
3376 5303 5.008811 CGTAGACTCGGATTCTATGGAGTTT 59.991 44.000 13.85 0.00 39.69 2.66
3377 5304 5.941555 AGACTCGGATTCTATGGAGTTTT 57.058 39.130 0.00 0.00 39.69 2.43
3378 5305 5.665459 AGACTCGGATTCTATGGAGTTTTG 58.335 41.667 0.00 0.00 39.69 2.44
3379 5306 4.770795 ACTCGGATTCTATGGAGTTTTGG 58.229 43.478 0.00 0.00 36.39 3.28
3380 5307 4.469945 ACTCGGATTCTATGGAGTTTTGGA 59.530 41.667 0.00 0.00 36.39 3.53
3381 5308 5.131142 ACTCGGATTCTATGGAGTTTTGGAT 59.869 40.000 0.00 0.00 36.39 3.41
3382 5309 6.326583 ACTCGGATTCTATGGAGTTTTGGATA 59.673 38.462 0.00 0.00 36.39 2.59
3383 5310 6.759272 TCGGATTCTATGGAGTTTTGGATAG 58.241 40.000 0.00 0.00 0.00 2.08
3386 5313 4.336889 TCTATGGAGTTTTGGATAGCCG 57.663 45.455 0.00 0.00 36.79 5.52
3392 5319 3.374367 GGAGTTTTGGATAGCCGAAGAAC 59.626 47.826 0.00 0.00 38.77 3.01
3417 5344 5.586643 GTGAAAATTAAGCTAGCAGCCTAGT 59.413 40.000 18.83 0.00 43.77 2.57
3568 5495 7.759433 CACCAAGTTTTTGTTGTAAGATGAACT 59.241 33.333 0.00 0.00 32.21 3.01
3593 5520 4.867047 GCGACAATGGACCATCTATCTATG 59.133 45.833 7.63 2.91 0.00 2.23
3788 5717 0.322008 GGCAGTTTGAGCAGCTAGGT 60.322 55.000 0.00 0.00 0.00 3.08
3825 5754 1.518572 GTGGACGATGCTACCACGG 60.519 63.158 0.00 0.00 43.21 4.94
3837 5766 4.530857 CCACGGCCACGGAGGATC 62.531 72.222 2.24 0.00 46.48 3.36
3839 5768 2.125326 CACGGCCACGGAGGATCTA 61.125 63.158 2.24 0.00 46.48 1.98
3887 5816 2.544480 TAGAAGACAGTGACGATGCG 57.456 50.000 0.00 0.00 0.00 4.73
3932 5861 2.106566 CTAGAAGCAAGCTCCTCAGGA 58.893 52.381 0.00 0.00 0.00 3.86
3974 5903 4.508662 AGCTTCTGGTAGATTTCTTTCGG 58.491 43.478 0.00 0.00 0.00 4.30
4138 6067 2.990514 GCCTCAGAGAAGACGAAAAGAC 59.009 50.000 0.00 0.00 0.00 3.01
4155 6084 3.773418 AGACTCTACTAGCCGCTGATA 57.227 47.619 2.16 0.00 0.00 2.15
4249 6178 3.666374 CGATGACTGCTGAAAACTGCTTC 60.666 47.826 0.00 0.00 0.00 3.86
4251 6180 1.867233 GACTGCTGAAAACTGCTTCGA 59.133 47.619 0.00 0.00 0.00 3.71
4326 6255 4.388773 GTGTGTATCATCGAAACAGAAGCA 59.611 41.667 0.00 0.00 0.00 3.91
4363 6292 1.366111 CCTTGCGGGGTATCACAACG 61.366 60.000 0.00 0.00 0.00 4.10
4400 6329 6.359804 ACAATGATGCTACAATACTGGTGAT 58.640 36.000 0.00 0.00 0.00 3.06
4567 6496 1.820519 ACCACATGCATTGCGAGAAAT 59.179 42.857 0.00 0.00 0.00 2.17
4570 6499 4.082300 ACCACATGCATTGCGAGAAATTTA 60.082 37.500 0.00 0.00 0.00 1.40
4652 6581 3.006430 TCTTCCGCAAGTCAAGTCACATA 59.994 43.478 0.00 0.00 0.00 2.29
4656 6585 3.419915 CGCAAGTCAAGTCACATAATGC 58.580 45.455 0.00 0.00 0.00 3.56
4669 6598 9.740239 AAGTCACATAATGCAAATTATCATCAC 57.260 29.630 0.00 0.00 0.00 3.06
4691 6620 4.785376 ACCAAGGAAAGAGGACATACATCT 59.215 41.667 0.00 0.00 41.61 2.90
4692 6621 5.964477 ACCAAGGAAAGAGGACATACATCTA 59.036 40.000 0.00 0.00 38.77 1.98
4732 6665 7.226720 AGTTTCCTATGTAGAACACACACAAAG 59.773 37.037 0.00 0.00 40.86 2.77
4747 6726 6.307800 CACACACAAAGAAGTTTAAACCACAG 59.692 38.462 14.72 3.59 0.00 3.66
4785 6764 1.432514 CGGGTCTCACTCACACAATG 58.567 55.000 0.00 0.00 0.00 2.82
4786 6765 1.000843 CGGGTCTCACTCACACAATGA 59.999 52.381 0.00 0.00 35.45 2.57
4787 6766 2.547855 CGGGTCTCACTCACACAATGAA 60.548 50.000 0.00 0.00 36.69 2.57
4793 6772 2.154462 CACTCACACAATGAACCCTCC 58.846 52.381 0.00 0.00 36.69 4.30
4797 6776 3.891366 CTCACACAATGAACCCTCCTTTT 59.109 43.478 0.00 0.00 36.69 2.27
4798 6777 4.285863 TCACACAATGAACCCTCCTTTTT 58.714 39.130 0.00 0.00 33.02 1.94
4813 6795 1.227664 TTTTTCCTGACGGGGCACA 59.772 52.632 0.00 0.00 35.33 4.57
4839 6821 5.221382 GGGCCACGATCTTAATACTTGAGTA 60.221 44.000 4.39 0.00 34.67 2.59
4868 6850 3.954904 CCCTCTCCTCTAATTCGTCTCAA 59.045 47.826 0.00 0.00 0.00 3.02
4873 6856 4.341487 TCCTCTAATTCGTCTCAACTCCA 58.659 43.478 0.00 0.00 0.00 3.86
4903 6886 3.249189 ACGCCCCAAAGCCTCTCA 61.249 61.111 0.00 0.00 0.00 3.27
4912 6895 2.024941 CCAAAGCCTCTCATTAGGGGTT 60.025 50.000 0.00 0.00 46.36 4.11
4921 6904 3.650942 TCTCATTAGGGGTTGTTGACACT 59.349 43.478 0.00 0.00 0.00 3.55
4959 6942 4.457603 TCGGACACCAAAATCGAATTGAAT 59.542 37.500 14.00 1.88 0.00 2.57
5085 7071 7.773224 ACCAGGATACAATGAAAATACATCGAA 59.227 33.333 0.00 0.00 41.41 3.71
5136 7122 2.505982 TGAGCCGCCTCATTAGCC 59.494 61.111 0.00 0.00 42.98 3.93
5204 7190 7.386299 AGCCAATGATTTGATCTCTACGATAAC 59.614 37.037 0.00 0.00 34.60 1.89
5214 7200 4.941657 TCTCTACGATAACTGAGCTCGTA 58.058 43.478 9.64 5.62 43.25 3.43
5233 7219 3.499157 CGTAGTGGACCTATCTCTAGCAC 59.501 52.174 0.00 0.00 0.00 4.40
5234 7220 3.963476 AGTGGACCTATCTCTAGCACT 57.037 47.619 0.00 0.00 0.00 4.40
5236 7222 4.980573 AGTGGACCTATCTCTAGCACTAG 58.019 47.826 0.00 0.00 29.40 2.57
5320 7306 0.877071 CCGAGCAAGAGCAACAACAT 59.123 50.000 0.00 0.00 45.49 2.71
5325 7311 3.709987 AGCAAGAGCAACAACATTTCAC 58.290 40.909 0.00 0.00 45.49 3.18
5353 7339 3.974222 GCTTCAGCAATATTGGGGC 57.026 52.632 17.02 2.91 41.59 5.80
5354 7340 1.113788 GCTTCAGCAATATTGGGGCA 58.886 50.000 17.02 0.00 41.59 5.36
5355 7341 1.481772 GCTTCAGCAATATTGGGGCAA 59.518 47.619 17.02 0.00 41.59 4.52
5387 7381 2.550830 AAGACTGACGACAAGCCATT 57.449 45.000 0.00 0.00 0.00 3.16
5410 7404 3.256879 AGACATGTGCCTCTATGGTATCG 59.743 47.826 1.15 0.00 38.35 2.92
5453 7489 2.752903 GCTCGAAGAAGAGGAGAAGACT 59.247 50.000 0.00 0.00 38.63 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 153 7.039574 CGGGGGTATTCTTCCTTTTCTTAAAAA 60.040 37.037 0.00 0.00 33.42 1.94
129 154 6.434965 CGGGGGTATTCTTCCTTTTCTTAAAA 59.565 38.462 0.00 0.00 0.00 1.52
130 155 5.947566 CGGGGGTATTCTTCCTTTTCTTAAA 59.052 40.000 0.00 0.00 0.00 1.52
131 156 5.503002 CGGGGGTATTCTTCCTTTTCTTAA 58.497 41.667 0.00 0.00 0.00 1.85
132 157 4.080186 CCGGGGGTATTCTTCCTTTTCTTA 60.080 45.833 0.00 0.00 0.00 2.10
133 158 3.308904 CCGGGGGTATTCTTCCTTTTCTT 60.309 47.826 0.00 0.00 0.00 2.52
134 159 2.241430 CCGGGGGTATTCTTCCTTTTCT 59.759 50.000 0.00 0.00 0.00 2.52
135 160 2.651455 CCGGGGGTATTCTTCCTTTTC 58.349 52.381 0.00 0.00 0.00 2.29
136 161 1.341679 GCCGGGGGTATTCTTCCTTTT 60.342 52.381 2.18 0.00 0.00 2.27
137 162 0.257905 GCCGGGGGTATTCTTCCTTT 59.742 55.000 2.18 0.00 0.00 3.11
138 163 0.623617 AGCCGGGGGTATTCTTCCTT 60.624 55.000 2.18 0.00 0.00 3.36
139 164 0.623617 AAGCCGGGGGTATTCTTCCT 60.624 55.000 2.18 0.00 0.00 3.36
140 165 0.179026 GAAGCCGGGGGTATTCTTCC 60.179 60.000 2.18 0.00 0.00 3.46
141 166 0.837940 AGAAGCCGGGGGTATTCTTC 59.162 55.000 2.18 5.56 30.60 2.87
142 167 0.546598 CAGAAGCCGGGGGTATTCTT 59.453 55.000 2.18 0.00 31.76 2.52
143 168 1.984288 GCAGAAGCCGGGGGTATTCT 61.984 60.000 2.18 0.00 33.42 2.40
144 169 1.526225 GCAGAAGCCGGGGGTATTC 60.526 63.158 2.18 0.00 33.58 1.75
145 170 1.645402 ATGCAGAAGCCGGGGGTATT 61.645 55.000 2.18 0.00 41.13 1.89
146 171 2.056906 GATGCAGAAGCCGGGGGTAT 62.057 60.000 2.18 0.00 41.13 2.73
147 172 2.690881 ATGCAGAAGCCGGGGGTA 60.691 61.111 2.18 0.00 41.13 3.69
148 173 4.115199 GATGCAGAAGCCGGGGGT 62.115 66.667 2.18 0.00 41.13 4.95
149 174 3.801997 AGATGCAGAAGCCGGGGG 61.802 66.667 2.18 0.00 41.13 5.40
150 175 2.515523 CAGATGCAGAAGCCGGGG 60.516 66.667 2.18 0.00 41.13 5.73
151 176 0.677731 TTTCAGATGCAGAAGCCGGG 60.678 55.000 2.18 0.00 41.13 5.73
152 177 0.731417 CTTTCAGATGCAGAAGCCGG 59.269 55.000 0.00 0.00 41.13 6.13
153 178 0.098376 GCTTTCAGATGCAGAAGCCG 59.902 55.000 0.00 0.00 41.13 5.52
154 179 1.132643 CAGCTTTCAGATGCAGAAGCC 59.867 52.381 14.10 0.37 41.13 4.35
155 180 2.082231 TCAGCTTTCAGATGCAGAAGC 58.918 47.619 11.32 11.32 42.57 3.86
156 181 3.371591 GTCTCAGCTTTCAGATGCAGAAG 59.628 47.826 0.00 0.00 30.39 2.85
157 182 3.332919 GTCTCAGCTTTCAGATGCAGAA 58.667 45.455 0.00 0.00 30.39 3.02
158 183 2.673326 CGTCTCAGCTTTCAGATGCAGA 60.673 50.000 0.00 0.00 30.39 4.26
159 184 1.659601 CGTCTCAGCTTTCAGATGCAG 59.340 52.381 0.00 0.00 30.39 4.41
160 185 1.718396 CGTCTCAGCTTTCAGATGCA 58.282 50.000 0.00 0.00 30.39 3.96
161 186 0.373024 GCGTCTCAGCTTTCAGATGC 59.627 55.000 13.11 13.11 42.82 3.91
162 187 0.644331 CGCGTCTCAGCTTTCAGATG 59.356 55.000 0.00 0.00 31.83 2.90
163 188 0.528017 TCGCGTCTCAGCTTTCAGAT 59.472 50.000 5.77 0.00 34.40 2.90
164 189 0.109551 CTCGCGTCTCAGCTTTCAGA 60.110 55.000 5.77 0.00 34.40 3.27
165 190 1.681945 GCTCGCGTCTCAGCTTTCAG 61.682 60.000 5.77 0.00 32.48 3.02
166 191 1.734477 GCTCGCGTCTCAGCTTTCA 60.734 57.895 5.77 0.00 32.48 2.69
167 192 1.445238 AGCTCGCGTCTCAGCTTTC 60.445 57.895 13.69 0.00 43.80 2.62
168 193 2.653702 AGCTCGCGTCTCAGCTTT 59.346 55.556 13.69 0.00 43.80 3.51
171 196 2.774774 CAAAGCTCGCGTCTCAGC 59.225 61.111 5.77 7.86 35.73 4.26
172 197 2.734673 GGCAAAGCTCGCGTCTCAG 61.735 63.158 5.77 0.00 0.00 3.35
173 198 2.738521 GGCAAAGCTCGCGTCTCA 60.739 61.111 5.77 0.00 0.00 3.27
174 199 2.738521 TGGCAAAGCTCGCGTCTC 60.739 61.111 5.77 0.00 0.00 3.36
175 200 3.044305 GTGGCAAAGCTCGCGTCT 61.044 61.111 5.77 1.28 0.00 4.18
176 201 4.430423 CGTGGCAAAGCTCGCGTC 62.430 66.667 5.77 0.00 31.80 5.19
249 275 1.507140 ACTTGAAGACAGGACCACCA 58.493 50.000 0.00 0.00 38.94 4.17
262 288 5.479306 CCCGAGTCAGATCTTTTACTTGAA 58.521 41.667 14.52 0.00 0.00 2.69
302 329 4.989797 TGCATCGAAGCAACAAAAATTGAT 59.010 33.333 13.73 0.00 42.46 2.57
337 364 1.230324 GCCGCTGAGAGACACTTTTT 58.770 50.000 0.00 0.00 0.00 1.94
503 537 5.163131 TGTGGGGGATTAATTAGCTAGAACC 60.163 44.000 0.00 0.00 0.00 3.62
672 720 1.225376 TAGGCCGTTTTCACGCACTG 61.225 55.000 0.00 0.00 45.72 3.66
792 1931 6.918892 AGTAAAATTTTGTTTGGAAGCCAC 57.081 33.333 13.76 0.00 30.78 5.01
831 1990 1.123928 GGAGATTCGGAGTGGGATGT 58.876 55.000 0.00 0.00 0.00 3.06
942 2104 2.048127 GACGAGACCTGTGTGGCC 60.048 66.667 0.00 0.00 40.22 5.36
943 2105 1.080434 GAGACGAGACCTGTGTGGC 60.080 63.158 0.00 0.00 40.22 5.01
949 2118 0.679640 AGCAGAGGAGACGAGACCTG 60.680 60.000 0.00 0.00 36.57 4.00
983 2152 2.240500 CGATCGGCTAGCTTGTGCC 61.241 63.158 15.72 13.11 45.25 5.01
984 2153 1.084370 AACGATCGGCTAGCTTGTGC 61.084 55.000 20.98 0.00 40.05 4.57
985 2154 2.203800 TAACGATCGGCTAGCTTGTG 57.796 50.000 20.98 3.93 0.00 3.33
986 2155 4.785511 ATATAACGATCGGCTAGCTTGT 57.214 40.909 20.98 1.79 0.00 3.16
987 2156 5.403246 AGAATATAACGATCGGCTAGCTTG 58.597 41.667 20.98 7.94 0.00 4.01
988 2157 5.416326 AGAGAATATAACGATCGGCTAGCTT 59.584 40.000 20.98 5.84 0.00 3.74
989 2158 4.944930 AGAGAATATAACGATCGGCTAGCT 59.055 41.667 20.98 7.42 0.00 3.32
990 2159 5.031578 CAGAGAATATAACGATCGGCTAGC 58.968 45.833 20.98 6.04 0.00 3.42
991 2160 5.449314 CCCAGAGAATATAACGATCGGCTAG 60.449 48.000 20.98 0.00 0.00 3.42
992 2161 4.398358 CCCAGAGAATATAACGATCGGCTA 59.602 45.833 20.98 10.74 0.00 3.93
993 2162 3.193691 CCCAGAGAATATAACGATCGGCT 59.806 47.826 20.98 8.66 0.00 5.52
994 2163 3.192844 TCCCAGAGAATATAACGATCGGC 59.807 47.826 20.98 0.00 0.00 5.54
995 2164 4.459685 ACTCCCAGAGAATATAACGATCGG 59.540 45.833 20.98 1.23 33.32 4.18
996 2165 5.394802 CACTCCCAGAGAATATAACGATCG 58.605 45.833 14.88 14.88 33.32 3.69
997 2166 5.164954 GCACTCCCAGAGAATATAACGATC 58.835 45.833 0.00 0.00 33.32 3.69
998 2167 4.588951 TGCACTCCCAGAGAATATAACGAT 59.411 41.667 0.00 0.00 33.32 3.73
999 2168 3.958147 TGCACTCCCAGAGAATATAACGA 59.042 43.478 0.00 0.00 33.32 3.85
1000 2169 4.202161 ACTGCACTCCCAGAGAATATAACG 60.202 45.833 0.00 0.00 36.67 3.18
1001 2170 5.283457 ACTGCACTCCCAGAGAATATAAC 57.717 43.478 0.00 0.00 36.67 1.89
1002 2171 5.425217 TGAACTGCACTCCCAGAGAATATAA 59.575 40.000 0.00 0.00 36.67 0.98
1003 2172 4.962362 TGAACTGCACTCCCAGAGAATATA 59.038 41.667 0.00 0.00 36.67 0.86
1004 2173 3.776969 TGAACTGCACTCCCAGAGAATAT 59.223 43.478 0.00 0.00 36.67 1.28
1005 2174 3.173151 TGAACTGCACTCCCAGAGAATA 58.827 45.455 0.00 0.00 36.67 1.75
1006 2175 1.980765 TGAACTGCACTCCCAGAGAAT 59.019 47.619 0.00 0.00 36.67 2.40
1007 2176 1.345741 CTGAACTGCACTCCCAGAGAA 59.654 52.381 0.00 0.00 36.67 2.87
1008 2177 0.972134 CTGAACTGCACTCCCAGAGA 59.028 55.000 0.00 0.00 36.67 3.10
1009 2178 0.683973 ACTGAACTGCACTCCCAGAG 59.316 55.000 0.00 0.00 36.67 3.35
1010 2179 1.131638 AACTGAACTGCACTCCCAGA 58.868 50.000 0.00 0.00 36.67 3.86
1011 2180 1.233019 CAACTGAACTGCACTCCCAG 58.767 55.000 0.00 0.00 38.78 4.45
1012 2181 0.819259 GCAACTGAACTGCACTCCCA 60.819 55.000 0.00 0.00 39.69 4.37
1013 2182 1.845809 CGCAACTGAACTGCACTCCC 61.846 60.000 0.00 0.00 39.91 4.30
1014 2183 1.571460 CGCAACTGAACTGCACTCC 59.429 57.895 0.00 0.00 39.91 3.85
1015 2184 1.082496 GCGCAACTGAACTGCACTC 60.082 57.895 0.30 0.00 39.91 3.51
1016 2185 1.779025 CTGCGCAACTGAACTGCACT 61.779 55.000 13.05 0.00 39.91 4.40
1022 2191 3.649986 ACGGCTGCGCAACTGAAC 61.650 61.111 25.58 4.28 0.00 3.18
1096 2265 0.959372 CCAGCTCAAGCCACTCCTTG 60.959 60.000 0.00 0.00 43.38 3.61
1387 2562 2.797278 CGAACCATCCCTCCTCCCG 61.797 68.421 0.00 0.00 0.00 5.14
1516 2697 2.757868 AGAGACCTGAGGTGAAATCTCG 59.242 50.000 9.89 0.00 35.25 4.04
1521 2702 5.544176 ACAGAATTAGAGACCTGAGGTGAAA 59.456 40.000 9.89 0.00 35.25 2.69
1531 2712 6.587273 AGAAGGCAATACAGAATTAGAGACC 58.413 40.000 0.00 0.00 0.00 3.85
1537 2718 5.607939 TCGGAGAAGGCAATACAGAATTA 57.392 39.130 0.00 0.00 0.00 1.40
1538 2719 4.487714 TCGGAGAAGGCAATACAGAATT 57.512 40.909 0.00 0.00 0.00 2.17
1539 2720 4.101585 TGATCGGAGAAGGCAATACAGAAT 59.898 41.667 0.00 0.00 43.58 2.40
1540 2721 3.450817 TGATCGGAGAAGGCAATACAGAA 59.549 43.478 0.00 0.00 43.58 3.02
1541 2722 3.031013 TGATCGGAGAAGGCAATACAGA 58.969 45.455 0.00 0.00 43.58 3.41
1542 2723 3.459232 TGATCGGAGAAGGCAATACAG 57.541 47.619 0.00 0.00 43.58 2.74
1543 2724 3.134623 ACATGATCGGAGAAGGCAATACA 59.865 43.478 0.00 0.00 43.58 2.29
1544 2725 3.733337 ACATGATCGGAGAAGGCAATAC 58.267 45.455 0.00 0.00 43.58 1.89
1545 2726 4.101585 AGAACATGATCGGAGAAGGCAATA 59.898 41.667 0.00 0.00 43.58 1.90
1550 2731 4.399004 AGAAGAACATGATCGGAGAAGG 57.601 45.455 0.00 0.00 43.58 3.46
1554 2735 6.142818 AGACTAAGAAGAACATGATCGGAG 57.857 41.667 0.00 0.00 0.00 4.63
1581 2762 6.021468 CCGATCGAATGCAAATCAAAAACTAC 60.021 38.462 18.66 0.00 0.00 2.73
1583 2764 4.858692 CCGATCGAATGCAAATCAAAAACT 59.141 37.500 18.66 0.00 0.00 2.66
1660 2841 2.883253 GACGCTGCTTCCGCTCTC 60.883 66.667 0.00 0.00 36.97 3.20
1730 2911 1.372623 GCCGTTCTCGTCCTCGTTT 60.373 57.895 0.00 0.00 38.33 3.60
1861 3048 2.096218 GCAGTGACTGGATCAACGAAAC 60.096 50.000 15.24 0.00 39.72 2.78
1909 3096 2.810887 GCATGTGCGAGACTGCGA 60.811 61.111 0.00 0.00 37.81 5.10
1934 3121 1.636988 CTGGTCTTACGGGCGTTAAG 58.363 55.000 0.00 0.00 0.00 1.85
1995 3186 2.903855 TACGGGATCGAGTCGCCC 60.904 66.667 16.04 16.04 40.11 6.13
2008 3474 5.220815 GGACTACAGTCAACTATCACTACGG 60.221 48.000 11.31 0.00 46.47 4.02
2014 3480 3.021695 CGGGGACTACAGTCAACTATCA 58.978 50.000 11.31 0.00 46.47 2.15
2046 3520 0.385098 GCCGTGGTAGAAAACGTTGC 60.385 55.000 0.00 0.00 38.11 4.17
2066 3556 0.314618 TGCAGCACGTACGGTTAGAA 59.685 50.000 21.06 0.00 0.00 2.10
2228 4024 1.903783 AATACGCCAACGGTTCGTGC 61.904 55.000 15.28 7.06 46.04 5.34
2269 4065 5.116180 CACCGGATATATATTCGTGGCATT 58.884 41.667 19.67 0.00 32.85 3.56
2293 4089 0.179006 GATGGGAGACAGGAATGGGC 60.179 60.000 0.00 0.00 0.00 5.36
2369 4165 5.444122 CGCTCCTTTTTCTTCTTTGTACTG 58.556 41.667 0.00 0.00 0.00 2.74
2374 4170 2.029918 CCCCGCTCCTTTTTCTTCTTTG 60.030 50.000 0.00 0.00 0.00 2.77
2377 4173 0.038310 CCCCCGCTCCTTTTTCTTCT 59.962 55.000 0.00 0.00 0.00 2.85
2378 4174 0.037734 TCCCCCGCTCCTTTTTCTTC 59.962 55.000 0.00 0.00 0.00 2.87
2380 4176 0.038310 CTTCCCCCGCTCCTTTTTCT 59.962 55.000 0.00 0.00 0.00 2.52
2381 4177 1.595993 GCTTCCCCCGCTCCTTTTTC 61.596 60.000 0.00 0.00 0.00 2.29
2399 4201 2.612567 TTGGCCATCAACGTCACGC 61.613 57.895 6.09 0.00 0.00 5.34
2416 4218 1.433064 CATTATGCGCTTGCCGGTT 59.567 52.632 9.73 0.00 38.03 4.44
2418 4220 2.003658 AACCATTATGCGCTTGCCGG 62.004 55.000 9.73 6.57 38.03 6.13
2451 4253 6.603940 ACACTTGTTTAATGTGCCCATATT 57.396 33.333 0.00 0.00 35.33 1.28
2452 4254 6.603940 AACACTTGTTTAATGTGCCCATAT 57.396 33.333 0.00 0.00 33.93 1.78
2457 4259 5.918576 GGAGTTAACACTTGTTTAATGTGCC 59.081 40.000 8.61 0.00 39.31 5.01
2503 4305 3.151710 CGATGGTGTAGGCCGGGA 61.152 66.667 2.18 0.00 0.00 5.14
2531 4333 5.291128 CGGAAACTTTAGAATACGACATGCT 59.709 40.000 0.00 0.00 0.00 3.79
2553 4355 1.730176 CGCTTTTCATATTGCGTCGG 58.270 50.000 0.00 0.00 42.93 4.79
2591 4393 5.992217 GGTTGATAAGGCGATTATTCTGTCT 59.008 40.000 0.00 0.00 34.10 3.41
2595 4397 4.957296 ACGGTTGATAAGGCGATTATTCT 58.043 39.130 0.00 0.00 34.10 2.40
2636 4438 2.494059 GTACGCCCTGCATGATTACAT 58.506 47.619 0.00 0.00 37.19 2.29
2680 4482 6.412072 CGTATGCAAAGCTAAAGCAAGATTAC 59.588 38.462 11.03 8.38 45.16 1.89
2682 4484 5.106157 ACGTATGCAAAGCTAAAGCAAGATT 60.106 36.000 11.03 0.00 45.16 2.40
2705 4507 8.993856 GCTACGAAACGCTACTAACATATATAC 58.006 37.037 0.00 0.00 0.00 1.47
2706 4508 8.939929 AGCTACGAAACGCTACTAACATATATA 58.060 33.333 0.00 0.00 34.11 0.86
2707 4509 7.814642 AGCTACGAAACGCTACTAACATATAT 58.185 34.615 0.00 0.00 34.11 0.86
2719 4521 1.798813 CCTTTTGAGCTACGAAACGCT 59.201 47.619 0.00 0.00 39.61 5.07
2727 4529 4.072839 GGTATATGCCCCTTTTGAGCTAC 58.927 47.826 0.00 0.00 0.00 3.58
2742 4544 3.439129 TCATAGTCGACAGCCGGTATATG 59.561 47.826 19.50 13.54 39.14 1.78
2746 4548 1.977056 ATCATAGTCGACAGCCGGTA 58.023 50.000 19.50 0.00 39.14 4.02
2747 4549 1.112113 AATCATAGTCGACAGCCGGT 58.888 50.000 19.50 0.00 39.14 5.28
2807 4610 1.270839 ACACTTAACGAGCTGGTGCAT 60.271 47.619 0.71 0.00 42.74 3.96
2811 4614 1.961394 TCTGACACTTAACGAGCTGGT 59.039 47.619 0.00 0.00 0.00 4.00
2814 4617 2.029020 TGCATCTGACACTTAACGAGCT 60.029 45.455 0.00 0.00 0.00 4.09
2830 4633 2.338577 ATGCCCTTACTCACTGCATC 57.661 50.000 0.00 0.00 38.17 3.91
2855 4693 4.855340 AGGAAATATTTGGTGATCCGTGT 58.145 39.130 5.17 0.00 36.30 4.49
2857 4695 5.104527 TCTGAGGAAATATTTGGTGATCCGT 60.105 40.000 5.17 0.00 36.30 4.69
2865 4703 8.284945 TCTCAAACATCTGAGGAAATATTTGG 57.715 34.615 5.17 0.00 42.68 3.28
2868 4706 8.734386 GTGTTCTCAAACATCTGAGGAAATATT 58.266 33.333 0.00 0.00 46.58 1.28
2871 4709 6.302269 AGTGTTCTCAAACATCTGAGGAAAT 58.698 36.000 0.00 0.00 46.58 2.17
2879 4717 5.241728 GGCCTAAAAGTGTTCTCAAACATCT 59.758 40.000 0.00 0.00 46.58 2.90
2881 4719 5.140454 AGGCCTAAAAGTGTTCTCAAACAT 58.860 37.500 1.29 0.00 46.58 2.71
2882 4720 4.532834 AGGCCTAAAAGTGTTCTCAAACA 58.467 39.130 1.29 0.00 43.06 2.83
3181 5019 2.811431 CAACGCTACTCACCAAATGGAA 59.189 45.455 6.42 0.00 38.94 3.53
3182 5020 2.422597 CAACGCTACTCACCAAATGGA 58.577 47.619 6.42 0.00 38.94 3.41
3183 5021 1.468520 CCAACGCTACTCACCAAATGG 59.531 52.381 0.00 0.00 42.17 3.16
3194 5085 0.107654 AAGGGCATCTCCAACGCTAC 60.108 55.000 0.00 0.00 36.21 3.58
3199 5090 3.629398 CAGTGAATAAGGGCATCTCCAAC 59.371 47.826 0.00 0.00 36.21 3.77
3235 5162 8.094798 ACCATATTACGGCATAACTTAACATG 57.905 34.615 0.00 0.00 0.00 3.21
3236 5163 8.564574 CAACCATATTACGGCATAACTTAACAT 58.435 33.333 0.00 0.00 0.00 2.71
3261 5188 1.278985 TCCGAGTCTACGTACCCTTCA 59.721 52.381 0.00 0.00 0.00 3.02
3288 5215 4.837972 AGTCTTCAGCTATCCAAAACTCC 58.162 43.478 0.00 0.00 0.00 3.85
3306 5233 9.649167 AGCATAACTTAACACGTAATAAAGTCT 57.351 29.630 0.00 0.00 30.37 3.24
3307 5234 9.685005 CAGCATAACTTAACACGTAATAAAGTC 57.315 33.333 0.00 0.00 30.37 3.01
3308 5235 9.211485 ACAGCATAACTTAACACGTAATAAAGT 57.789 29.630 0.00 0.00 31.94 2.66
3315 5242 9.251792 CCATATTACAGCATAACTTAACACGTA 57.748 33.333 0.00 0.00 0.00 3.57
3316 5243 7.767198 ACCATATTACAGCATAACTTAACACGT 59.233 33.333 0.00 0.00 0.00 4.49
3317 5244 8.138365 ACCATATTACAGCATAACTTAACACG 57.862 34.615 0.00 0.00 0.00 4.49
3318 5245 8.273557 CGACCATATTACAGCATAACTTAACAC 58.726 37.037 0.00 0.00 0.00 3.32
3319 5246 8.198778 TCGACCATATTACAGCATAACTTAACA 58.801 33.333 0.00 0.00 0.00 2.41
3320 5247 8.583810 TCGACCATATTACAGCATAACTTAAC 57.416 34.615 0.00 0.00 0.00 2.01
3321 5248 9.256477 CTTCGACCATATTACAGCATAACTTAA 57.744 33.333 0.00 0.00 0.00 1.85
3322 5249 7.870954 CCTTCGACCATATTACAGCATAACTTA 59.129 37.037 0.00 0.00 0.00 2.24
3323 5250 6.706270 CCTTCGACCATATTACAGCATAACTT 59.294 38.462 0.00 0.00 0.00 2.66
3324 5251 6.223852 CCTTCGACCATATTACAGCATAACT 58.776 40.000 0.00 0.00 0.00 2.24
3325 5252 5.408604 CCCTTCGACCATATTACAGCATAAC 59.591 44.000 0.00 0.00 0.00 1.89
3326 5253 5.071250 ACCCTTCGACCATATTACAGCATAA 59.929 40.000 0.00 0.00 0.00 1.90
3327 5254 4.591498 ACCCTTCGACCATATTACAGCATA 59.409 41.667 0.00 0.00 0.00 3.14
3328 5255 3.391296 ACCCTTCGACCATATTACAGCAT 59.609 43.478 0.00 0.00 0.00 3.79
3329 5256 2.769663 ACCCTTCGACCATATTACAGCA 59.230 45.455 0.00 0.00 0.00 4.41
3330 5257 3.470645 ACCCTTCGACCATATTACAGC 57.529 47.619 0.00 0.00 0.00 4.40
3331 5258 4.037208 ACGTACCCTTCGACCATATTACAG 59.963 45.833 0.00 0.00 0.00 2.74
3332 5259 3.953612 ACGTACCCTTCGACCATATTACA 59.046 43.478 0.00 0.00 0.00 2.41
3333 5260 4.574599 ACGTACCCTTCGACCATATTAC 57.425 45.455 0.00 0.00 0.00 1.89
3334 5261 5.470098 GTCTACGTACCCTTCGACCATATTA 59.530 44.000 0.00 0.00 0.00 0.98
3335 5262 4.276926 GTCTACGTACCCTTCGACCATATT 59.723 45.833 0.00 0.00 0.00 1.28
3336 5263 3.817647 GTCTACGTACCCTTCGACCATAT 59.182 47.826 0.00 0.00 0.00 1.78
3337 5264 3.118261 AGTCTACGTACCCTTCGACCATA 60.118 47.826 6.74 0.00 0.00 2.74
3338 5265 2.019984 GTCTACGTACCCTTCGACCAT 58.980 52.381 0.00 0.00 0.00 3.55
3339 5266 1.003580 AGTCTACGTACCCTTCGACCA 59.996 52.381 6.74 0.00 0.00 4.02
3340 5267 1.668237 GAGTCTACGTACCCTTCGACC 59.332 57.143 6.74 0.00 0.00 4.79
3341 5268 1.325943 CGAGTCTACGTACCCTTCGAC 59.674 57.143 0.00 0.00 0.00 4.20
3342 5269 1.645034 CGAGTCTACGTACCCTTCGA 58.355 55.000 0.00 0.00 0.00 3.71
3343 5270 0.654683 CCGAGTCTACGTACCCTTCG 59.345 60.000 0.00 0.00 0.00 3.79
3344 5271 2.029838 TCCGAGTCTACGTACCCTTC 57.970 55.000 0.00 0.00 0.00 3.46
3345 5272 2.725221 ATCCGAGTCTACGTACCCTT 57.275 50.000 0.00 0.00 0.00 3.95
3346 5273 2.172293 AGAATCCGAGTCTACGTACCCT 59.828 50.000 0.00 0.00 0.00 4.34
3347 5274 2.570135 AGAATCCGAGTCTACGTACCC 58.430 52.381 0.00 0.00 0.00 3.69
3348 5275 4.153835 CCATAGAATCCGAGTCTACGTACC 59.846 50.000 7.70 0.00 30.52 3.34
3349 5276 4.993584 TCCATAGAATCCGAGTCTACGTAC 59.006 45.833 7.70 0.00 30.52 3.67
3350 5277 5.219343 TCCATAGAATCCGAGTCTACGTA 57.781 43.478 7.70 0.00 30.52 3.57
3351 5278 4.066490 CTCCATAGAATCCGAGTCTACGT 58.934 47.826 7.70 0.00 30.52 3.57
3352 5279 4.066490 ACTCCATAGAATCCGAGTCTACG 58.934 47.826 7.70 0.00 29.62 3.51
3353 5280 6.394025 AAACTCCATAGAATCCGAGTCTAC 57.606 41.667 7.70 0.00 34.53 2.59
3354 5281 6.183360 CCAAAACTCCATAGAATCCGAGTCTA 60.183 42.308 7.97 7.97 34.53 2.59
3355 5282 5.395768 CCAAAACTCCATAGAATCCGAGTCT 60.396 44.000 3.49 3.49 34.53 3.24
3356 5283 4.811557 CCAAAACTCCATAGAATCCGAGTC 59.188 45.833 0.00 0.00 34.53 3.36
3357 5284 4.469945 TCCAAAACTCCATAGAATCCGAGT 59.530 41.667 0.00 0.00 37.17 4.18
3358 5285 5.023533 TCCAAAACTCCATAGAATCCGAG 57.976 43.478 0.00 0.00 0.00 4.63
3359 5286 5.630415 ATCCAAAACTCCATAGAATCCGA 57.370 39.130 0.00 0.00 0.00 4.55
3360 5287 5.409826 GCTATCCAAAACTCCATAGAATCCG 59.590 44.000 0.00 0.00 0.00 4.18
3361 5288 5.707764 GGCTATCCAAAACTCCATAGAATCC 59.292 44.000 0.00 0.00 0.00 3.01
3362 5289 5.409826 CGGCTATCCAAAACTCCATAGAATC 59.590 44.000 0.00 0.00 0.00 2.52
3363 5290 5.071788 TCGGCTATCCAAAACTCCATAGAAT 59.928 40.000 0.00 0.00 0.00 2.40
3364 5291 4.407621 TCGGCTATCCAAAACTCCATAGAA 59.592 41.667 0.00 0.00 0.00 2.10
3365 5292 3.964688 TCGGCTATCCAAAACTCCATAGA 59.035 43.478 0.00 0.00 0.00 1.98
3366 5293 4.336889 TCGGCTATCCAAAACTCCATAG 57.663 45.455 0.00 0.00 0.00 2.23
3367 5294 4.407621 TCTTCGGCTATCCAAAACTCCATA 59.592 41.667 0.00 0.00 0.00 2.74
3368 5295 3.199946 TCTTCGGCTATCCAAAACTCCAT 59.800 43.478 0.00 0.00 0.00 3.41
3369 5296 2.569853 TCTTCGGCTATCCAAAACTCCA 59.430 45.455 0.00 0.00 0.00 3.86
3370 5297 3.261981 TCTTCGGCTATCCAAAACTCC 57.738 47.619 0.00 0.00 0.00 3.85
3371 5298 3.062234 CGTTCTTCGGCTATCCAAAACTC 59.938 47.826 0.00 0.00 35.71 3.01
3372 5299 3.000727 CGTTCTTCGGCTATCCAAAACT 58.999 45.455 0.00 0.00 35.71 2.66
3373 5300 2.740447 ACGTTCTTCGGCTATCCAAAAC 59.260 45.455 0.00 0.00 44.69 2.43
3374 5301 2.739913 CACGTTCTTCGGCTATCCAAAA 59.260 45.455 0.00 0.00 44.69 2.44
3375 5302 2.028839 TCACGTTCTTCGGCTATCCAAA 60.029 45.455 0.00 0.00 44.69 3.28
3376 5303 1.546923 TCACGTTCTTCGGCTATCCAA 59.453 47.619 0.00 0.00 44.69 3.53
3377 5304 1.179152 TCACGTTCTTCGGCTATCCA 58.821 50.000 0.00 0.00 44.69 3.41
3378 5305 2.288961 TTCACGTTCTTCGGCTATCC 57.711 50.000 0.00 0.00 44.69 2.59
3379 5306 4.859629 ATTTTCACGTTCTTCGGCTATC 57.140 40.909 0.00 0.00 44.69 2.08
3380 5307 6.674760 GCTTAATTTTCACGTTCTTCGGCTAT 60.675 38.462 0.00 0.00 44.69 2.97
3381 5308 5.390145 GCTTAATTTTCACGTTCTTCGGCTA 60.390 40.000 0.00 0.00 44.69 3.93
3382 5309 4.612939 GCTTAATTTTCACGTTCTTCGGCT 60.613 41.667 0.00 0.00 44.69 5.52
3383 5310 3.602489 GCTTAATTTTCACGTTCTTCGGC 59.398 43.478 0.00 0.00 44.69 5.54
3386 5313 6.599437 TGCTAGCTTAATTTTCACGTTCTTC 58.401 36.000 17.23 0.00 0.00 2.87
3392 5319 3.375299 AGGCTGCTAGCTTAATTTTCACG 59.625 43.478 17.23 0.00 41.99 4.35
3417 5344 4.809193 TGGCCCATAACTATTTGGCATTA 58.191 39.130 0.00 0.00 43.96 1.90
3525 5452 5.012148 ACTTGGTGAGCACAGAATAGTAGTT 59.988 40.000 2.75 0.00 0.00 2.24
3568 5495 1.199615 TAGATGGTCCATTGTCGCCA 58.800 50.000 5.65 0.00 35.28 5.69
3593 5520 7.227314 TGCTCCATCAGTAATGATCAACAATAC 59.773 37.037 1.94 1.54 37.59 1.89
3610 5537 8.486210 ACTTATAAACTAACATCTGCTCCATCA 58.514 33.333 0.00 0.00 0.00 3.07
3611 5538 8.768955 CACTTATAAACTAACATCTGCTCCATC 58.231 37.037 0.00 0.00 0.00 3.51
3721 5650 7.437748 ACTTGCTCCTACACATCATAAGTATC 58.562 38.462 0.00 0.00 0.00 2.24
3825 5754 1.000052 GTAGCTTAGATCCTCCGTGGC 60.000 57.143 0.00 0.00 35.26 5.01
3837 5766 6.204688 TCTGTTTCCAACATGTTGTAGCTTAG 59.795 38.462 31.20 21.85 41.26 2.18
3839 5768 4.887071 TCTGTTTCCAACATGTTGTAGCTT 59.113 37.500 31.20 0.00 41.26 3.74
3911 5840 1.473080 CCTGAGGAGCTTGCTTCTAGC 60.473 57.143 3.03 0.00 42.82 3.42
3974 5903 4.948004 AGATTTCTTGGGGTTTTATCGTCC 59.052 41.667 0.00 0.00 0.00 4.79
4138 6067 3.348119 TCCATATCAGCGGCTAGTAGAG 58.652 50.000 0.26 0.00 0.00 2.43
4155 6084 4.394610 CGACGAGATGATATCACTCTCCAT 59.605 45.833 24.31 18.15 33.40 3.41
4227 6156 1.802960 AGCAGTTTTCAGCAGTCATCG 59.197 47.619 0.00 0.00 34.70 3.84
4249 6178 6.311445 CCTGGTCCAATTATCTCGATATTTCG 59.689 42.308 0.00 0.00 46.87 3.46
4251 6180 5.940470 GCCTGGTCCAATTATCTCGATATTT 59.060 40.000 0.00 0.00 0.00 1.40
4272 6201 1.454847 TTGCGGGACAAAGTTGCCT 60.455 52.632 0.00 0.00 34.56 4.75
4326 6255 2.378038 AGGTTGCAACAGTTCACATGT 58.622 42.857 29.55 0.00 0.00 3.21
4353 6282 8.845942 TGTATCAACATACTACGTTGTGATAC 57.154 34.615 20.41 20.41 43.40 2.24
4355 6284 8.817100 CATTGTATCAACATACTACGTTGTGAT 58.183 33.333 13.03 8.73 43.40 3.06
4363 6292 9.476202 TGTAGCATCATTGTATCAACATACTAC 57.524 33.333 0.00 0.00 36.55 2.73
4393 6322 1.534163 CAAGCACTCACACATCACCAG 59.466 52.381 0.00 0.00 0.00 4.00
4400 6329 3.944650 ACAAATGTACAAGCACTCACACA 59.055 39.130 0.00 0.00 0.00 3.72
4652 6581 6.795144 TCCTTGGTGATGATAATTTGCATT 57.205 33.333 0.00 0.00 0.00 3.56
4656 6585 7.340232 TCCTCTTTCCTTGGTGATGATAATTTG 59.660 37.037 0.00 0.00 0.00 2.32
4669 6598 5.365021 AGATGTATGTCCTCTTTCCTTGG 57.635 43.478 0.00 0.00 0.00 3.61
4732 6665 4.888038 ACGGTTCTGTGGTTTAAACTTC 57.112 40.909 17.50 11.21 0.00 3.01
4797 6776 1.303236 CATGTGCCCCGTCAGGAAA 60.303 57.895 0.00 0.00 41.02 3.13
4798 6777 2.350895 CATGTGCCCCGTCAGGAA 59.649 61.111 0.00 0.00 41.02 3.36
4813 6795 4.102524 TCAAGTATTAAGATCGTGGCCCAT 59.897 41.667 0.00 0.00 0.00 4.00
4839 6821 4.160626 CGAATTAGAGGAGAGGGAGTTTGT 59.839 45.833 0.00 0.00 0.00 2.83
4852 6834 4.425520 GTGGAGTTGAGACGAATTAGAGG 58.574 47.826 0.00 0.00 0.00 3.69
4868 6850 0.250901 GTGCTGAACATGGGTGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
4873 6856 2.672996 GGCGTGCTGAACATGGGT 60.673 61.111 0.00 0.00 35.67 4.51
4931 6914 4.413495 TCGATTTTGGTGTCCGATTTTC 57.587 40.909 0.00 0.00 0.00 2.29
4937 6920 3.822594 TCAATTCGATTTTGGTGTCCG 57.177 42.857 8.30 0.00 0.00 4.79
5008 6993 5.555966 TGTTTGTGTGAATACTGAGCCATA 58.444 37.500 0.00 0.00 0.00 2.74
5105 7091 1.269309 CGGCTCATGTGTAGGCTAGAC 60.269 57.143 14.46 14.46 37.38 2.59
5112 7098 0.105593 ATGAGGCGGCTCATGTGTAG 59.894 55.000 42.97 0.00 41.95 2.74
5136 7122 4.693566 TCTTTTGTTCGTGTAAGCCATAGG 59.306 41.667 0.00 0.00 0.00 2.57
5204 7190 2.039818 TAGGTCCACTACGAGCTCAG 57.960 55.000 15.40 7.04 40.87 3.35
5214 7200 3.963476 AGTGCTAGAGATAGGTCCACT 57.037 47.619 0.00 0.00 0.00 4.00
5216 7202 3.138468 TGCTAGTGCTAGAGATAGGTCCA 59.862 47.826 10.17 0.00 40.48 4.02
5233 7219 6.820656 ACTCTGGTCATAAAGTTGAATGCTAG 59.179 38.462 0.00 0.00 0.00 3.42
5234 7220 6.711277 ACTCTGGTCATAAAGTTGAATGCTA 58.289 36.000 0.00 0.00 0.00 3.49
5236 7222 5.886960 ACTCTGGTCATAAAGTTGAATGC 57.113 39.130 0.00 0.00 0.00 3.56
5353 7339 4.682860 GTCAGTCTTTTGTTGGCATCATTG 59.317 41.667 0.00 0.00 0.00 2.82
5354 7340 4.557296 CGTCAGTCTTTTGTTGGCATCATT 60.557 41.667 0.00 0.00 0.00 2.57
5355 7341 3.058016 CGTCAGTCTTTTGTTGGCATCAT 60.058 43.478 0.00 0.00 0.00 2.45
5387 7381 4.459337 CGATACCATAGAGGCACATGTCTA 59.541 45.833 0.00 0.00 43.14 2.59
5410 7404 2.740714 GCGAGTGGCGTGGTGATTC 61.741 63.158 0.00 0.00 43.41 2.52
5430 7424 3.192633 GTCTTCTCCTCTTCTTCGAGCTT 59.807 47.826 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.