Multiple sequence alignment - TraesCS2D01G395600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G395600 chr2D 100.000 5123 0 0 1 5123 506786580 506791702 0.000000e+00 9461
1 TraesCS2D01G395600 chr2D 85.460 1293 158 15 3053 4317 605370112 605371402 0.000000e+00 1319
2 TraesCS2D01G395600 chr2D 76.320 1212 186 58 1549 2695 605368637 605369812 5.800000e-154 555
3 TraesCS2D01G395600 chr2B 93.018 4340 183 46 849 5123 594841650 594845934 0.000000e+00 6226
4 TraesCS2D01G395600 chr2B 83.572 1467 189 33 2896 4317 735519990 735521449 0.000000e+00 1327
5 TraesCS2D01G395600 chr2B 94.286 140 7 1 644 783 594841418 594841556 4.020000e-51 213
6 TraesCS2D01G395600 chr2A 93.993 2830 110 23 2338 5123 651606155 651608968 0.000000e+00 4229
7 TraesCS2D01G395600 chr2A 91.630 1362 70 21 849 2199 651604834 651606162 0.000000e+00 1844
8 TraesCS2D01G395600 chr2A 86.012 1294 147 21 3053 4317 736548275 736549563 0.000000e+00 1356
9 TraesCS2D01G395600 chr2A 89.054 539 53 2 236 769 651604119 651604656 0.000000e+00 664
10 TraesCS2D01G395600 chr2A 76.554 1062 168 54 1686 2691 736546752 736547788 1.650000e-139 507
11 TraesCS2D01G395600 chr1D 95.021 241 10 2 1 239 451247018 451247258 1.350000e-100 377
12 TraesCS2D01G395600 chr1D 93.333 240 14 2 1 239 466118405 466118167 2.270000e-93 353
13 TraesCS2D01G395600 chr5D 95.021 241 8 3 1 239 188388044 188388282 4.840000e-100 375
14 TraesCS2D01G395600 chr7B 93.776 241 13 2 1 239 640506863 640507103 1.360000e-95 361
15 TraesCS2D01G395600 chr7B 78.462 195 29 12 424 609 181358545 181358355 1.170000e-21 115
16 TraesCS2D01G395600 chr7B 92.857 70 3 2 646 713 367022235 367022166 3.260000e-17 100
17 TraesCS2D01G395600 chr3B 93.776 241 12 3 1 239 809135036 809135275 4.880000e-95 359
18 TraesCS2D01G395600 chr3B 79.825 228 38 6 424 644 231998107 231997881 5.310000e-35 159
19 TraesCS2D01G395600 chr7D 93.361 241 14 2 1 239 633074822 633075062 6.310000e-94 355
20 TraesCS2D01G395600 chr7D 90.244 82 6 2 646 725 140832235 140832316 7.020000e-19 106
21 TraesCS2D01G395600 chr6D 93.361 241 14 2 1 239 445654397 445654157 6.310000e-94 355
22 TraesCS2D01G395600 chr3D 92.946 241 15 2 1 239 56360604 56360364 2.940000e-92 350
23 TraesCS2D01G395600 chr3D 92.946 241 14 3 1 239 517750359 517750120 1.060000e-91 348
24 TraesCS2D01G395600 chr1B 81.446 415 64 11 1835 2242 672366496 672366088 1.380000e-85 327
25 TraesCS2D01G395600 chr7A 82.915 199 25 7 418 610 231102170 231102365 2.450000e-38 171
26 TraesCS2D01G395600 chr7A 82.297 209 26 9 418 619 231229945 231230149 2.450000e-38 171
27 TraesCS2D01G395600 chr1A 79.574 235 37 8 418 644 522238708 522238477 1.910000e-34 158
28 TraesCS2D01G395600 chr6B 91.566 83 5 2 646 726 548822611 548822529 4.190000e-21 113
29 TraesCS2D01G395600 chr5A 90.909 77 6 1 646 721 457083964 457084040 9.070000e-18 102
30 TraesCS2D01G395600 chr3A 90.909 77 6 1 646 721 345478658 345478582 9.070000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G395600 chr2D 506786580 506791702 5122 False 9461.000000 9461 100.000 1 5123 1 chr2D.!!$F1 5122
1 TraesCS2D01G395600 chr2D 605368637 605371402 2765 False 937.000000 1319 80.890 1549 4317 2 chr2D.!!$F2 2768
2 TraesCS2D01G395600 chr2B 594841418 594845934 4516 False 3219.500000 6226 93.652 644 5123 2 chr2B.!!$F2 4479
3 TraesCS2D01G395600 chr2B 735519990 735521449 1459 False 1327.000000 1327 83.572 2896 4317 1 chr2B.!!$F1 1421
4 TraesCS2D01G395600 chr2A 651604119 651608968 4849 False 2245.666667 4229 91.559 236 5123 3 chr2A.!!$F1 4887
5 TraesCS2D01G395600 chr2A 736546752 736549563 2811 False 931.500000 1356 81.283 1686 4317 2 chr2A.!!$F2 2631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.032952 CGACCTTCTGTCCGTCCAAA 59.967 55.000 0.00 0.00 41.18 3.28 F
634 640 0.104304 GTAATCGTCGGCCACCATCT 59.896 55.000 2.24 0.00 0.00 2.90 F
898 1016 0.174845 CGCATCCAGACGGGTTAGAA 59.825 55.000 0.00 0.00 38.11 2.10 F
2294 2462 0.248289 AGTGAACCCCGGATTGTACG 59.752 55.000 0.73 0.00 0.00 3.67 F
2571 2758 3.284617 TGATGATCATGTTTGCTCCCTG 58.715 45.455 14.30 0.00 0.00 4.45 F
3127 3558 3.197766 TGACTAACATGGACCATCCTGTC 59.802 47.826 3.21 10.92 37.46 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 1261 0.034960 TCAGAGAGACCAGGGAGTCG 60.035 60.000 0.00 0.0 41.83 4.18 R
1458 1588 1.226746 AGTAAGAGCAAACACACCGC 58.773 50.000 0.00 0.0 0.00 5.68 R
2571 2758 1.340889 TCCCATGCAACAGAAAACAGC 59.659 47.619 0.00 0.0 0.00 4.40 R
3127 3558 1.464608 CCGTCCAATACTTGTGTGCAG 59.535 52.381 0.00 0.0 0.00 4.41 R
3711 4154 3.819564 TTGTCTGTGTAGCACTTCACT 57.180 42.857 8.58 0.0 35.11 3.41 R
4742 5241 1.447489 CTTCACGAGCAGAGCCCTG 60.447 63.158 0.00 0.0 43.22 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.991783 ATTTCATCAATCAGGACATAAGTCAT 57.008 30.769 0.00 0.00 46.80 3.06
27 28 8.812513 TTTCATCAATCAGGACATAAGTCATT 57.187 30.769 0.00 0.00 46.80 2.57
28 29 8.442632 TTCATCAATCAGGACATAAGTCATTC 57.557 34.615 0.00 0.00 46.80 2.67
29 30 7.799081 TCATCAATCAGGACATAAGTCATTCT 58.201 34.615 0.00 0.00 46.80 2.40
30 31 8.270030 TCATCAATCAGGACATAAGTCATTCTT 58.730 33.333 0.00 0.00 46.80 2.52
31 32 9.551734 CATCAATCAGGACATAAGTCATTCTTA 57.448 33.333 0.00 0.00 46.80 2.10
32 33 8.948631 TCAATCAGGACATAAGTCATTCTTAC 57.051 34.615 0.00 0.00 46.80 2.34
33 34 8.539544 TCAATCAGGACATAAGTCATTCTTACA 58.460 33.333 0.00 0.00 46.80 2.41
34 35 9.166173 CAATCAGGACATAAGTCATTCTTACAA 57.834 33.333 0.00 0.00 46.80 2.41
35 36 9.739276 AATCAGGACATAAGTCATTCTTACAAA 57.261 29.630 0.00 0.00 46.80 2.83
36 37 9.911788 ATCAGGACATAAGTCATTCTTACAAAT 57.088 29.630 0.00 0.00 46.80 2.32
46 47 8.915057 AGTCATTCTTACAAATATCAGGGATG 57.085 34.615 0.00 0.00 0.00 3.51
47 48 8.497745 AGTCATTCTTACAAATATCAGGGATGT 58.502 33.333 0.00 0.00 0.00 3.06
48 49 8.778358 GTCATTCTTACAAATATCAGGGATGTC 58.222 37.037 0.00 0.00 0.00 3.06
49 50 8.717717 TCATTCTTACAAATATCAGGGATGTCT 58.282 33.333 0.00 0.00 0.00 3.41
50 51 8.997323 CATTCTTACAAATATCAGGGATGTCTC 58.003 37.037 0.00 0.00 0.00 3.36
51 52 7.067496 TCTTACAAATATCAGGGATGTCTCC 57.933 40.000 0.00 0.00 41.26 3.71
52 53 6.846505 TCTTACAAATATCAGGGATGTCTCCT 59.153 38.462 0.00 0.00 41.74 3.69
53 54 8.010697 TCTTACAAATATCAGGGATGTCTCCTA 58.989 37.037 0.00 0.00 41.74 2.94
54 55 6.678568 ACAAATATCAGGGATGTCTCCTAG 57.321 41.667 0.00 0.00 41.74 3.02
55 56 6.146760 ACAAATATCAGGGATGTCTCCTAGT 58.853 40.000 0.00 0.00 41.74 2.57
56 57 6.268847 ACAAATATCAGGGATGTCTCCTAGTC 59.731 42.308 0.00 0.00 41.74 2.59
57 58 2.757894 TCAGGGATGTCTCCTAGTCC 57.242 55.000 0.00 0.00 41.74 3.85
59 60 2.734893 GGGATGTCTCCTAGTCCCG 58.265 63.158 0.00 0.00 40.81 5.14
60 61 0.185416 GGGATGTCTCCTAGTCCCGA 59.815 60.000 0.00 0.00 40.81 5.14
61 62 1.411216 GGGATGTCTCCTAGTCCCGAA 60.411 57.143 0.00 0.00 40.81 4.30
62 63 1.682323 GGATGTCTCCTAGTCCCGAAC 59.318 57.143 0.00 0.00 38.65 3.95
63 64 1.682323 GATGTCTCCTAGTCCCGAACC 59.318 57.143 0.00 0.00 0.00 3.62
64 65 0.406750 TGTCTCCTAGTCCCGAACCA 59.593 55.000 0.00 0.00 0.00 3.67
65 66 1.203087 TGTCTCCTAGTCCCGAACCAA 60.203 52.381 0.00 0.00 0.00 3.67
66 67 1.204231 GTCTCCTAGTCCCGAACCAAC 59.796 57.143 0.00 0.00 0.00 3.77
67 68 0.535797 CTCCTAGTCCCGAACCAACC 59.464 60.000 0.00 0.00 0.00 3.77
68 69 0.178926 TCCTAGTCCCGAACCAACCA 60.179 55.000 0.00 0.00 0.00 3.67
69 70 0.036671 CCTAGTCCCGAACCAACCAC 60.037 60.000 0.00 0.00 0.00 4.16
70 71 0.682852 CTAGTCCCGAACCAACCACA 59.317 55.000 0.00 0.00 0.00 4.17
71 72 0.393820 TAGTCCCGAACCAACCACAC 59.606 55.000 0.00 0.00 0.00 3.82
72 73 1.895231 GTCCCGAACCAACCACACC 60.895 63.158 0.00 0.00 0.00 4.16
73 74 2.193517 CCCGAACCAACCACACCA 59.806 61.111 0.00 0.00 0.00 4.17
74 75 2.190841 CCCGAACCAACCACACCAC 61.191 63.158 0.00 0.00 0.00 4.16
75 76 1.452289 CCGAACCAACCACACCACA 60.452 57.895 0.00 0.00 0.00 4.17
76 77 1.444119 CCGAACCAACCACACCACAG 61.444 60.000 0.00 0.00 0.00 3.66
77 78 0.746563 CGAACCAACCACACCACAGT 60.747 55.000 0.00 0.00 0.00 3.55
86 87 3.642755 CACCACAGTGCGACCTTC 58.357 61.111 0.00 0.00 37.14 3.46
87 88 1.069765 CACCACAGTGCGACCTTCT 59.930 57.895 0.00 0.00 37.14 2.85
88 89 1.069765 ACCACAGTGCGACCTTCTG 59.930 57.895 0.00 0.00 35.60 3.02
89 90 1.069765 CCACAGTGCGACCTTCTGT 59.930 57.895 0.00 0.00 42.14 3.41
90 91 0.946221 CCACAGTGCGACCTTCTGTC 60.946 60.000 0.00 0.00 39.89 3.51
91 92 0.946221 CACAGTGCGACCTTCTGTCC 60.946 60.000 0.00 0.00 41.18 4.02
92 93 1.734477 CAGTGCGACCTTCTGTCCG 60.734 63.158 0.00 0.00 41.18 4.79
93 94 2.201022 AGTGCGACCTTCTGTCCGT 61.201 57.895 0.00 0.00 41.18 4.69
94 95 1.733399 GTGCGACCTTCTGTCCGTC 60.733 63.158 0.00 0.00 41.18 4.79
95 96 2.126031 GCGACCTTCTGTCCGTCC 60.126 66.667 0.00 0.00 41.18 4.79
96 97 2.927580 GCGACCTTCTGTCCGTCCA 61.928 63.158 0.00 0.00 41.18 4.02
97 98 1.663739 CGACCTTCTGTCCGTCCAA 59.336 57.895 0.00 0.00 41.18 3.53
98 99 0.032952 CGACCTTCTGTCCGTCCAAA 59.967 55.000 0.00 0.00 41.18 3.28
99 100 1.797025 GACCTTCTGTCCGTCCAAAG 58.203 55.000 0.00 0.00 38.09 2.77
100 101 0.396811 ACCTTCTGTCCGTCCAAAGG 59.603 55.000 0.00 0.00 41.81 3.11
101 102 0.685097 CCTTCTGTCCGTCCAAAGGA 59.315 55.000 0.00 0.00 39.05 3.36
102 103 1.338200 CCTTCTGTCCGTCCAAAGGAG 60.338 57.143 0.00 0.00 39.05 3.69
103 104 0.685097 TTCTGTCCGTCCAAAGGAGG 59.315 55.000 0.00 0.00 38.65 4.30
104 105 1.376037 CTGTCCGTCCAAAGGAGGC 60.376 63.158 0.37 0.00 38.65 4.70
105 106 2.046217 GTCCGTCCAAAGGAGGCC 60.046 66.667 0.00 0.00 38.65 5.19
106 107 2.528127 TCCGTCCAAAGGAGGCCA 60.528 61.111 5.01 0.00 36.40 5.36
107 108 2.045926 CCGTCCAAAGGAGGCCAG 60.046 66.667 5.01 0.00 36.40 4.85
108 109 2.592993 CCGTCCAAAGGAGGCCAGA 61.593 63.158 5.01 0.00 36.40 3.86
109 110 1.604378 CGTCCAAAGGAGGCCAGAT 59.396 57.895 5.01 0.00 30.80 2.90
110 111 0.830648 CGTCCAAAGGAGGCCAGATA 59.169 55.000 5.01 0.00 30.80 1.98
111 112 1.209504 CGTCCAAAGGAGGCCAGATAA 59.790 52.381 5.01 0.00 30.80 1.75
112 113 2.158755 CGTCCAAAGGAGGCCAGATAAT 60.159 50.000 5.01 0.00 30.80 1.28
113 114 3.217626 GTCCAAAGGAGGCCAGATAATG 58.782 50.000 5.01 0.00 29.39 1.90
114 115 4.000453 GTCCAAAGGAGGCCAGATAATGG 61.000 52.174 5.01 6.32 42.01 3.16
129 130 4.950200 TGGCTTGCCCATTCTGTT 57.050 50.000 9.35 0.00 39.18 3.16
130 131 2.657297 TGGCTTGCCCATTCTGTTC 58.343 52.632 9.35 0.00 39.18 3.18
131 132 0.899717 TGGCTTGCCCATTCTGTTCC 60.900 55.000 9.35 0.00 39.18 3.62
132 133 1.607801 GGCTTGCCCATTCTGTTCCC 61.608 60.000 0.00 0.00 0.00 3.97
133 134 0.613012 GCTTGCCCATTCTGTTCCCT 60.613 55.000 0.00 0.00 0.00 4.20
134 135 1.340991 GCTTGCCCATTCTGTTCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
135 136 2.687914 GCTTGCCCATTCTGTTCCCTAT 60.688 50.000 0.00 0.00 0.00 2.57
136 137 2.734755 TGCCCATTCTGTTCCCTATG 57.265 50.000 0.00 0.00 0.00 2.23
137 138 2.204463 TGCCCATTCTGTTCCCTATGA 58.796 47.619 0.00 0.00 0.00 2.15
138 139 2.580322 TGCCCATTCTGTTCCCTATGAA 59.420 45.455 0.00 0.00 0.00 2.57
151 152 6.753913 TTCCCTATGAACATGAGATAGCTT 57.246 37.500 0.00 0.00 0.00 3.74
152 153 6.106648 TCCCTATGAACATGAGATAGCTTG 57.893 41.667 0.00 0.00 0.00 4.01
153 154 5.840693 TCCCTATGAACATGAGATAGCTTGA 59.159 40.000 0.00 0.00 0.00 3.02
154 155 6.327365 TCCCTATGAACATGAGATAGCTTGAA 59.673 38.462 0.00 0.00 0.00 2.69
155 156 6.426328 CCCTATGAACATGAGATAGCTTGAAC 59.574 42.308 0.00 0.00 0.00 3.18
156 157 6.988580 CCTATGAACATGAGATAGCTTGAACA 59.011 38.462 0.00 0.00 0.00 3.18
157 158 7.660617 CCTATGAACATGAGATAGCTTGAACAT 59.339 37.037 0.00 0.00 0.00 2.71
158 159 6.915544 TGAACATGAGATAGCTTGAACATC 57.084 37.500 0.00 0.00 0.00 3.06
159 160 5.819379 TGAACATGAGATAGCTTGAACATCC 59.181 40.000 0.00 0.00 0.00 3.51
160 161 5.627182 ACATGAGATAGCTTGAACATCCT 57.373 39.130 0.00 0.00 0.00 3.24
161 162 5.609423 ACATGAGATAGCTTGAACATCCTC 58.391 41.667 0.00 0.00 0.00 3.71
162 163 4.679373 TGAGATAGCTTGAACATCCTCC 57.321 45.455 0.00 0.00 0.00 4.30
163 164 3.389329 TGAGATAGCTTGAACATCCTCCC 59.611 47.826 0.00 0.00 0.00 4.30
164 165 3.645687 GAGATAGCTTGAACATCCTCCCT 59.354 47.826 0.00 0.00 0.00 4.20
165 166 4.043596 AGATAGCTTGAACATCCTCCCTT 58.956 43.478 0.00 0.00 0.00 3.95
166 167 2.797177 AGCTTGAACATCCTCCCTTC 57.203 50.000 0.00 0.00 0.00 3.46
167 168 1.283321 AGCTTGAACATCCTCCCTTCC 59.717 52.381 0.00 0.00 0.00 3.46
168 169 1.683319 GCTTGAACATCCTCCCTTCCC 60.683 57.143 0.00 0.00 0.00 3.97
169 170 1.918957 CTTGAACATCCTCCCTTCCCT 59.081 52.381 0.00 0.00 0.00 4.20
170 171 1.584724 TGAACATCCTCCCTTCCCTC 58.415 55.000 0.00 0.00 0.00 4.30
171 172 1.203428 TGAACATCCTCCCTTCCCTCA 60.203 52.381 0.00 0.00 0.00 3.86
172 173 1.916181 GAACATCCTCCCTTCCCTCAA 59.084 52.381 0.00 0.00 0.00 3.02
173 174 2.059756 ACATCCTCCCTTCCCTCAAA 57.940 50.000 0.00 0.00 0.00 2.69
174 175 2.358258 ACATCCTCCCTTCCCTCAAAA 58.642 47.619 0.00 0.00 0.00 2.44
175 176 2.310052 ACATCCTCCCTTCCCTCAAAAG 59.690 50.000 0.00 0.00 0.00 2.27
176 177 0.698818 TCCTCCCTTCCCTCAAAAGC 59.301 55.000 0.00 0.00 0.00 3.51
177 178 0.323816 CCTCCCTTCCCTCAAAAGCC 60.324 60.000 0.00 0.00 0.00 4.35
178 179 0.701147 CTCCCTTCCCTCAAAAGCCT 59.299 55.000 0.00 0.00 0.00 4.58
179 180 1.076187 CTCCCTTCCCTCAAAAGCCTT 59.924 52.381 0.00 0.00 0.00 4.35
180 181 1.503347 TCCCTTCCCTCAAAAGCCTTT 59.497 47.619 0.00 0.00 0.00 3.11
181 182 1.620323 CCCTTCCCTCAAAAGCCTTTG 59.380 52.381 1.08 1.08 42.88 2.77
182 183 2.597455 CCTTCCCTCAAAAGCCTTTGA 58.403 47.619 10.02 10.02 46.88 2.69
194 195 8.376889 TCAAAAGCCTTTGAATTTTATCAACC 57.623 30.769 8.04 0.00 46.24 3.77
195 196 7.989741 TCAAAAGCCTTTGAATTTTATCAACCA 59.010 29.630 8.04 0.00 46.24 3.67
196 197 8.619546 CAAAAGCCTTTGAATTTTATCAACCAA 58.380 29.630 1.27 0.00 44.03 3.67
197 198 7.728847 AAGCCTTTGAATTTTATCAACCAAC 57.271 32.000 0.00 0.00 38.95 3.77
198 199 6.825610 AGCCTTTGAATTTTATCAACCAACA 58.174 32.000 0.00 0.00 38.95 3.33
199 200 7.452562 AGCCTTTGAATTTTATCAACCAACAT 58.547 30.769 0.00 0.00 38.95 2.71
200 201 7.388500 AGCCTTTGAATTTTATCAACCAACATG 59.612 33.333 0.00 0.00 38.95 3.21
201 202 7.361116 GCCTTTGAATTTTATCAACCAACATGG 60.361 37.037 0.00 0.00 45.02 3.66
214 215 2.872245 CCAACATGGTATAGCAAGACCG 59.128 50.000 13.63 2.18 40.05 4.79
215 216 2.872245 CAACATGGTATAGCAAGACCGG 59.128 50.000 13.63 0.00 40.05 5.28
216 217 2.116238 ACATGGTATAGCAAGACCGGT 58.884 47.619 6.92 6.92 40.05 5.28
217 218 2.102588 ACATGGTATAGCAAGACCGGTC 59.897 50.000 27.67 27.67 40.05 4.79
218 219 1.117150 TGGTATAGCAAGACCGGTCC 58.883 55.000 30.82 15.91 40.05 4.46
219 220 1.117150 GGTATAGCAAGACCGGTCCA 58.883 55.000 30.82 11.61 0.00 4.02
220 221 1.692519 GGTATAGCAAGACCGGTCCAT 59.307 52.381 30.82 17.69 0.00 3.41
221 222 2.548067 GGTATAGCAAGACCGGTCCATG 60.548 54.545 30.82 28.02 0.00 3.66
222 223 1.204146 ATAGCAAGACCGGTCCATGT 58.796 50.000 30.82 19.98 0.00 3.21
223 224 0.981183 TAGCAAGACCGGTCCATGTT 59.019 50.000 30.82 26.79 0.00 2.71
224 225 0.321653 AGCAAGACCGGTCCATGTTC 60.322 55.000 30.82 16.91 0.00 3.18
225 226 1.635663 GCAAGACCGGTCCATGTTCG 61.636 60.000 30.82 13.41 0.00 3.95
227 228 1.189524 AAGACCGGTCCATGTTCGGA 61.190 55.000 30.82 0.00 45.96 4.55
244 245 5.116180 GTTCGGACCATTAATCATCACAGA 58.884 41.667 0.00 0.00 0.00 3.41
253 254 8.003044 ACCATTAATCATCACAGAGGATTTCAT 58.997 33.333 11.45 3.51 39.53 2.57
294 295 3.384532 GGTTGGTGCCCATGCCAG 61.385 66.667 9.10 0.00 36.00 4.85
308 309 0.466555 TGCCAGCCCTACAAAAACGT 60.467 50.000 0.00 0.00 0.00 3.99
310 311 1.600023 CCAGCCCTACAAAAACGTGA 58.400 50.000 0.00 0.00 0.00 4.35
312 313 1.069227 CAGCCCTACAAAAACGTGAGC 60.069 52.381 0.00 0.00 0.00 4.26
391 392 5.589452 GCAGAATCTCAAGAGATGACCAAAT 59.411 40.000 12.96 0.00 46.75 2.32
394 395 9.339850 CAGAATCTCAAGAGATGACCAAATAAT 57.660 33.333 12.96 0.00 46.75 1.28
398 399 6.319658 TCTCAAGAGATGACCAAATAATTGGC 59.680 38.462 9.59 3.58 45.15 4.52
412 413 7.754625 CAAATAATTGGCAGGGAAATGAAAAG 58.245 34.615 0.00 0.00 32.69 2.27
413 414 4.980339 AATTGGCAGGGAAATGAAAAGT 57.020 36.364 0.00 0.00 0.00 2.66
422 423 3.767673 GGGAAATGAAAAGTTAGGGGGAC 59.232 47.826 0.00 0.00 0.00 4.46
434 435 0.251073 AGGGGGACGTTTGGATTACG 59.749 55.000 0.00 0.00 44.20 3.18
437 438 1.371337 GGGACGTTTGGATTACGCCC 61.371 60.000 10.47 10.47 43.07 6.13
471 472 1.205417 CAAATCAGGGCGAGCCAAAAT 59.795 47.619 16.65 2.71 37.98 1.82
476 477 1.000731 CAGGGCGAGCCAAAATTTTGA 59.999 47.619 28.44 0.00 40.55 2.69
479 480 1.335506 GGCGAGCCAAAATTTTGACGA 60.336 47.619 28.44 0.00 40.55 4.20
525 526 0.601046 ACGCGTGGGCATGATATCTG 60.601 55.000 12.93 1.40 39.92 2.90
527 528 1.873486 CGCGTGGGCATGATATCTGAA 60.873 52.381 3.98 0.00 39.92 3.02
529 530 2.146342 CGTGGGCATGATATCTGAACC 58.854 52.381 3.98 6.78 0.00 3.62
550 556 1.635663 GACGACCATTGGCGTGGAAG 61.636 60.000 23.45 10.09 42.02 3.46
576 582 2.683362 AGCTAGGCTTTAATCCAAACGC 59.317 45.455 0.00 0.00 33.89 4.84
590 596 1.237285 AAACGCTCACCCATGCAGTC 61.237 55.000 0.00 0.00 0.00 3.51
623 629 5.869350 CAAGATTTTGGAGTGGTAATCGTC 58.131 41.667 0.00 0.00 33.38 4.20
630 636 1.812507 GTGGTAATCGTCGGCCACC 60.813 63.158 2.24 0.43 43.96 4.61
634 640 0.104304 GTAATCGTCGGCCACCATCT 59.896 55.000 2.24 0.00 0.00 2.90
639 645 1.418342 CGTCGGCCACCATCTAAACG 61.418 60.000 2.24 0.00 0.00 3.60
673 679 1.211949 CCTACCAACCCATCGGTCAAT 59.788 52.381 0.00 0.00 43.71 2.57
775 798 9.449719 GAGGATTTCATTAGGAGTGAAAACTTA 57.550 33.333 5.52 0.00 45.50 2.24
826 917 2.116125 GCCCAGGCCACTGTTCTT 59.884 61.111 5.01 0.00 43.36 2.52
861 970 1.908793 CCAGGGTCCAGACGTGACT 60.909 63.158 0.00 0.00 33.22 3.41
893 1011 4.457496 CAGCGCATCCAGACGGGT 62.457 66.667 11.47 0.00 38.11 5.28
894 1012 3.706373 AGCGCATCCAGACGGGTT 61.706 61.111 11.47 0.00 38.11 4.11
895 1013 2.185867 GCGCATCCAGACGGGTTA 59.814 61.111 0.30 0.00 38.11 2.85
896 1014 1.883084 GCGCATCCAGACGGGTTAG 60.883 63.158 0.30 0.00 38.11 2.34
897 1015 1.813859 CGCATCCAGACGGGTTAGA 59.186 57.895 0.00 0.00 38.11 2.10
898 1016 0.174845 CGCATCCAGACGGGTTAGAA 59.825 55.000 0.00 0.00 38.11 2.10
899 1017 1.653151 GCATCCAGACGGGTTAGAAC 58.347 55.000 0.00 0.00 38.11 3.01
915 1033 6.162079 GGTTAGAACTTAGAAGCCGTTAGTT 58.838 40.000 0.00 0.00 0.00 2.24
991 1117 1.595794 GTTCGCTGGTTTTCACTCGAA 59.404 47.619 0.00 0.00 34.86 3.71
1129 1257 1.591594 CTCGCGTCACACAGGTTGT 60.592 57.895 5.77 0.00 39.97 3.32
1131 1259 2.594962 CGCGTCACACAGGTTGTCC 61.595 63.158 0.00 0.00 35.67 4.02
1132 1260 2.251642 GCGTCACACAGGTTGTCCC 61.252 63.158 0.00 0.00 35.67 4.46
1133 1261 1.597027 CGTCACACAGGTTGTCCCC 60.597 63.158 0.00 0.00 35.67 4.81
1134 1262 1.597027 GTCACACAGGTTGTCCCCG 60.597 63.158 0.00 0.00 35.67 5.73
1135 1263 1.762858 TCACACAGGTTGTCCCCGA 60.763 57.895 0.00 0.00 35.67 5.14
1136 1264 1.597027 CACACAGGTTGTCCCCGAC 60.597 63.158 0.00 0.00 35.67 4.79
1137 1265 1.764854 ACACAGGTTGTCCCCGACT 60.765 57.895 0.00 0.00 29.79 4.18
1141 1269 2.606826 GGTTGTCCCCGACTCCCT 60.607 66.667 0.00 0.00 33.15 4.20
1149 1277 1.755008 CCCGACTCCCTGGTCTCTC 60.755 68.421 0.00 0.00 34.38 3.20
1153 1281 1.762708 GACTCCCTGGTCTCTCTGAG 58.237 60.000 0.00 0.00 33.81 3.35
1157 1285 1.993301 TCCCTGGTCTCTCTGAGTACA 59.007 52.381 4.32 0.00 0.00 2.90
1163 1291 5.641209 CCTGGTCTCTCTGAGTACATTTTTG 59.359 44.000 4.32 0.00 0.00 2.44
1166 1295 7.152645 TGGTCTCTCTGAGTACATTTTTGTAC 58.847 38.462 4.32 7.95 43.52 2.90
1189 1318 9.178427 GTACTGTATAGTAATCGATTTGTGGAC 57.822 37.037 17.19 7.92 40.89 4.02
1193 1322 8.355169 TGTATAGTAATCGATTTGTGGACTACC 58.645 37.037 17.19 11.34 0.00 3.18
1298 1427 2.564947 AGTGAGACAGTGAGATTGGGTC 59.435 50.000 0.00 0.00 0.00 4.46
1299 1428 2.300152 GTGAGACAGTGAGATTGGGTCA 59.700 50.000 0.00 0.00 0.00 4.02
1300 1429 3.055530 GTGAGACAGTGAGATTGGGTCAT 60.056 47.826 0.00 0.00 0.00 3.06
1301 1430 3.584406 TGAGACAGTGAGATTGGGTCATT 59.416 43.478 0.00 0.00 0.00 2.57
1302 1431 4.042062 TGAGACAGTGAGATTGGGTCATTT 59.958 41.667 0.00 0.00 0.00 2.32
1303 1432 4.330250 AGACAGTGAGATTGGGTCATTTG 58.670 43.478 0.00 0.00 0.00 2.32
1304 1433 3.424703 ACAGTGAGATTGGGTCATTTGG 58.575 45.455 0.00 0.00 0.00 3.28
1305 1434 2.756760 CAGTGAGATTGGGTCATTTGGG 59.243 50.000 0.00 0.00 0.00 4.12
1306 1435 2.379907 AGTGAGATTGGGTCATTTGGGT 59.620 45.455 0.00 0.00 0.00 4.51
1307 1436 2.755103 GTGAGATTGGGTCATTTGGGTC 59.245 50.000 0.00 0.00 0.00 4.46
1308 1437 2.378208 TGAGATTGGGTCATTTGGGTCA 59.622 45.455 0.00 0.00 0.00 4.02
1309 1438 3.011595 TGAGATTGGGTCATTTGGGTCAT 59.988 43.478 0.00 0.00 0.00 3.06
1310 1439 4.026052 GAGATTGGGTCATTTGGGTCATT 58.974 43.478 0.00 0.00 0.00 2.57
1311 1440 3.770933 AGATTGGGTCATTTGGGTCATTG 59.229 43.478 0.00 0.00 0.00 2.82
1312 1441 1.935799 TGGGTCATTTGGGTCATTGG 58.064 50.000 0.00 0.00 0.00 3.16
1313 1442 1.194218 GGGTCATTTGGGTCATTGGG 58.806 55.000 0.00 0.00 0.00 4.12
1314 1443 1.552254 GGGTCATTTGGGTCATTGGGT 60.552 52.381 0.00 0.00 0.00 4.51
1332 1461 4.631234 TGGGTGGATAGTGAATAGAAGGT 58.369 43.478 0.00 0.00 0.00 3.50
1374 1503 1.266989 CGGGCAGAAAAGAACAGAACC 59.733 52.381 0.00 0.00 0.00 3.62
1388 1517 7.611213 AGAACAGAACCGGATTAGTTATTTG 57.389 36.000 9.46 0.00 0.00 2.32
1389 1518 5.813080 ACAGAACCGGATTAGTTATTTGC 57.187 39.130 9.46 0.00 0.00 3.68
1460 1590 6.537301 TGAGTGTTAAATTAAGGATAGTGGCG 59.463 38.462 0.00 0.00 0.00 5.69
1462 1592 5.587443 GTGTTAAATTAAGGATAGTGGCGGT 59.413 40.000 0.00 0.00 0.00 5.68
1500 1630 0.749649 GTTGGCACCAAACATGTGGA 59.250 50.000 9.25 0.00 41.65 4.02
1542 1672 0.539438 TTCCAGTGTGATGGTTGCCC 60.539 55.000 0.00 0.00 41.43 5.36
1652 1783 8.206867 AGTCTGCATTTGAGCTATAATTAGTCA 58.793 33.333 0.00 0.00 34.99 3.41
1720 1851 5.388654 TGAAGCCTCTTTCTCAAGGAAAAT 58.611 37.500 0.00 0.00 42.52 1.82
1724 1856 8.427902 AAGCCTCTTTCTCAAGGAAAATAAAT 57.572 30.769 0.00 0.00 42.52 1.40
1746 1878 6.818281 ATAAATAAGTGGTACCAGTAGGCA 57.182 37.500 22.67 8.90 39.06 4.75
1815 1949 4.460382 AGAAGGTTCCATTGCAGTGTTATG 59.540 41.667 8.53 0.00 0.00 1.90
2009 2173 5.178797 GTTTCAGCTTGTCTATTCTGCCTA 58.821 41.667 0.00 0.00 0.00 3.93
2228 2396 4.445385 GCTGCTTGTACTTTTTGGTTGATG 59.555 41.667 0.00 0.00 0.00 3.07
2243 2411 3.555586 GGTTGATGCCATTGAACAAGCTT 60.556 43.478 0.00 0.00 36.48 3.74
2253 2421 6.421405 CCATTGAACAAGCTTTTAAGTTTGC 58.579 36.000 15.97 4.94 46.94 3.68
2254 2422 5.694674 TTGAACAAGCTTTTAAGTTTGCG 57.305 34.783 15.97 0.00 46.94 4.85
2258 2426 7.640852 TGAACAAGCTTTTAAGTTTGCGTATA 58.359 30.769 15.97 0.68 46.94 1.47
2261 2429 5.212589 AGCTTTTAAGTTTGCGTATACCG 57.787 39.130 0.00 0.00 40.40 4.02
2284 2452 2.271944 AGCTAACAACAGTGAACCCC 57.728 50.000 0.00 0.00 0.00 4.95
2294 2462 0.248289 AGTGAACCCCGGATTGTACG 59.752 55.000 0.73 0.00 0.00 3.67
2434 2618 7.703328 TCATTGAGTTAGGTCAAACAAGAAAC 58.297 34.615 0.00 0.00 39.84 2.78
2571 2758 3.284617 TGATGATCATGTTTGCTCCCTG 58.715 45.455 14.30 0.00 0.00 4.45
2827 3015 5.577945 CCTTTTGCTAAATTGCCACATGTAG 59.422 40.000 0.00 0.00 0.00 2.74
2830 3018 6.825944 TTGCTAAATTGCCACATGTAGTTA 57.174 33.333 0.00 0.00 0.00 2.24
2973 3366 9.906660 GTGAATTATCTATCTCTCGTCTTGATT 57.093 33.333 0.00 0.00 0.00 2.57
3079 3507 6.442564 TGTACAATCCTAGTGAATGGGTAACT 59.557 38.462 0.00 0.00 0.00 2.24
3127 3558 3.197766 TGACTAACATGGACCATCCTGTC 59.802 47.826 3.21 10.92 37.46 3.51
3711 4154 3.738982 AGAATGTGTTGGACATGAACGA 58.261 40.909 0.00 0.00 45.12 3.85
3726 4169 2.100087 TGAACGAGTGAAGTGCTACACA 59.900 45.455 0.00 0.00 39.18 3.72
3873 4316 2.517166 GAAGGGGAGAATGCGGCC 60.517 66.667 0.00 0.00 0.00 6.13
4203 4667 5.284079 ACATTTCATCAGTTGTTCAACAGC 58.716 37.500 16.31 0.00 0.00 4.40
4595 5094 2.852075 TTCCTCCCCTTGCCGTGT 60.852 61.111 0.00 0.00 0.00 4.49
4673 5172 1.446099 CAGCGAGCGCCAGTAGAAA 60.446 57.895 11.66 0.00 43.17 2.52
4676 5175 1.446099 CGAGCGCCAGTAGAAAGCA 60.446 57.895 2.29 0.00 0.00 3.91
4823 5322 0.244450 TCGTCATGGGGAACGTGTAC 59.756 55.000 4.80 0.00 37.38 2.90
4912 5412 4.312443 TGAATCGAAAGGTGGTACAAGAC 58.688 43.478 0.00 0.00 44.16 3.01
5084 5590 2.159099 GGCGATGAACATGGAGTAGACA 60.159 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.991783 ATGACTTATGTCCTGATTGATGAAAT 57.008 30.769 6.32 0.00 42.28 2.17
2 3 8.812513 AATGACTTATGTCCTGATTGATGAAA 57.187 30.769 6.32 0.00 42.28 2.69
5 6 8.447924 AAGAATGACTTATGTCCTGATTGATG 57.552 34.615 6.32 0.00 42.28 3.07
6 7 9.553064 GTAAGAATGACTTATGTCCTGATTGAT 57.447 33.333 6.32 0.00 42.11 2.57
7 8 8.539544 TGTAAGAATGACTTATGTCCTGATTGA 58.460 33.333 6.32 0.00 42.11 2.57
8 9 8.722480 TGTAAGAATGACTTATGTCCTGATTG 57.278 34.615 6.32 0.00 42.11 2.67
9 10 9.739276 TTTGTAAGAATGACTTATGTCCTGATT 57.261 29.630 6.32 0.40 42.11 2.57
10 11 9.911788 ATTTGTAAGAATGACTTATGTCCTGAT 57.088 29.630 6.32 0.00 42.11 2.90
20 21 9.347240 CATCCCTGATATTTGTAAGAATGACTT 57.653 33.333 0.00 0.00 42.04 3.01
21 22 8.497745 ACATCCCTGATATTTGTAAGAATGACT 58.502 33.333 0.00 0.00 0.00 3.41
22 23 8.682936 ACATCCCTGATATTTGTAAGAATGAC 57.317 34.615 0.00 0.00 0.00 3.06
23 24 8.717717 AGACATCCCTGATATTTGTAAGAATGA 58.282 33.333 0.00 0.00 0.00 2.57
24 25 8.915057 AGACATCCCTGATATTTGTAAGAATG 57.085 34.615 0.00 0.00 0.00 2.67
25 26 8.160106 GGAGACATCCCTGATATTTGTAAGAAT 58.840 37.037 0.00 0.00 40.03 2.40
26 27 7.509546 GGAGACATCCCTGATATTTGTAAGAA 58.490 38.462 0.00 0.00 40.03 2.52
27 28 7.067496 GGAGACATCCCTGATATTTGTAAGA 57.933 40.000 0.00 0.00 40.03 2.10
43 44 1.682323 GGTTCGGGACTAGGAGACATC 59.318 57.143 0.00 0.00 0.00 3.06
44 45 1.006758 TGGTTCGGGACTAGGAGACAT 59.993 52.381 0.00 0.00 0.00 3.06
45 46 0.406750 TGGTTCGGGACTAGGAGACA 59.593 55.000 0.00 0.00 0.00 3.41
46 47 1.204231 GTTGGTTCGGGACTAGGAGAC 59.796 57.143 0.00 0.00 0.00 3.36
47 48 1.553706 GTTGGTTCGGGACTAGGAGA 58.446 55.000 0.00 0.00 0.00 3.71
48 49 0.535797 GGTTGGTTCGGGACTAGGAG 59.464 60.000 0.00 0.00 0.00 3.69
49 50 0.178926 TGGTTGGTTCGGGACTAGGA 60.179 55.000 0.00 0.00 0.00 2.94
50 51 0.036671 GTGGTTGGTTCGGGACTAGG 60.037 60.000 0.00 0.00 0.00 3.02
51 52 0.682852 TGTGGTTGGTTCGGGACTAG 59.317 55.000 0.00 0.00 0.00 2.57
52 53 0.393820 GTGTGGTTGGTTCGGGACTA 59.606 55.000 0.00 0.00 0.00 2.59
53 54 1.147600 GTGTGGTTGGTTCGGGACT 59.852 57.895 0.00 0.00 0.00 3.85
54 55 1.895231 GGTGTGGTTGGTTCGGGAC 60.895 63.158 0.00 0.00 0.00 4.46
55 56 2.376165 TGGTGTGGTTGGTTCGGGA 61.376 57.895 0.00 0.00 0.00 5.14
56 57 2.190841 GTGGTGTGGTTGGTTCGGG 61.191 63.158 0.00 0.00 0.00 5.14
57 58 1.444119 CTGTGGTGTGGTTGGTTCGG 61.444 60.000 0.00 0.00 0.00 4.30
58 59 0.746563 ACTGTGGTGTGGTTGGTTCG 60.747 55.000 0.00 0.00 0.00 3.95
59 60 0.738389 CACTGTGGTGTGGTTGGTTC 59.262 55.000 0.00 0.00 38.54 3.62
60 61 1.319614 GCACTGTGGTGTGGTTGGTT 61.320 55.000 10.21 0.00 44.65 3.67
61 62 1.752694 GCACTGTGGTGTGGTTGGT 60.753 57.895 10.21 0.00 44.65 3.67
62 63 2.833533 CGCACTGTGGTGTGGTTGG 61.834 63.158 10.21 0.00 46.59 3.77
63 64 2.715005 CGCACTGTGGTGTGGTTG 59.285 61.111 10.21 0.00 46.59 3.77
68 69 1.227556 GAAGGTCGCACTGTGGTGT 60.228 57.895 10.21 0.00 44.65 4.16
69 70 1.069765 AGAAGGTCGCACTGTGGTG 59.930 57.895 10.21 0.00 45.53 4.17
70 71 1.069765 CAGAAGGTCGCACTGTGGT 59.930 57.895 10.21 0.00 0.00 4.16
71 72 0.946221 GACAGAAGGTCGCACTGTGG 60.946 60.000 10.21 0.00 43.49 4.17
72 73 2.522060 GACAGAAGGTCGCACTGTG 58.478 57.895 2.76 2.76 43.49 3.66
80 81 1.608283 CCTTTGGACGGACAGAAGGTC 60.608 57.143 11.05 0.00 46.20 3.85
81 82 0.396811 CCTTTGGACGGACAGAAGGT 59.603 55.000 11.05 0.00 33.76 3.50
82 83 0.685097 TCCTTTGGACGGACAGAAGG 59.315 55.000 12.15 12.15 38.54 3.46
83 84 1.338200 CCTCCTTTGGACGGACAGAAG 60.338 57.143 0.00 0.00 0.00 2.85
84 85 0.685097 CCTCCTTTGGACGGACAGAA 59.315 55.000 0.00 0.00 0.00 3.02
85 86 1.827399 GCCTCCTTTGGACGGACAGA 61.827 60.000 6.37 0.00 0.00 3.41
86 87 1.376037 GCCTCCTTTGGACGGACAG 60.376 63.158 6.37 0.00 0.00 3.51
87 88 2.747686 GCCTCCTTTGGACGGACA 59.252 61.111 6.37 0.00 0.00 4.02
88 89 2.046217 GGCCTCCTTTGGACGGAC 60.046 66.667 0.00 0.88 0.00 4.79
89 90 2.528127 TGGCCTCCTTTGGACGGA 60.528 61.111 3.32 0.00 38.15 4.69
90 91 1.915078 ATCTGGCCTCCTTTGGACGG 61.915 60.000 3.32 0.00 42.89 4.79
91 92 0.830648 TATCTGGCCTCCTTTGGACG 59.169 55.000 3.32 0.00 38.15 4.79
92 93 3.217626 CATTATCTGGCCTCCTTTGGAC 58.782 50.000 3.32 0.00 35.14 4.02
93 94 2.175499 CCATTATCTGGCCTCCTTTGGA 59.825 50.000 3.32 0.00 38.47 3.53
94 95 2.590821 CCATTATCTGGCCTCCTTTGG 58.409 52.381 3.32 0.17 38.47 3.28
105 106 3.005472 CAGAATGGGCAAGCCATTATCTG 59.995 47.826 13.87 15.07 37.91 2.90
106 107 3.228453 CAGAATGGGCAAGCCATTATCT 58.772 45.455 13.87 7.63 37.91 1.98
107 108 2.961062 ACAGAATGGGCAAGCCATTATC 59.039 45.455 13.87 5.48 43.62 1.75
108 109 3.036452 ACAGAATGGGCAAGCCATTAT 57.964 42.857 13.87 5.63 43.62 1.28
109 110 2.530460 ACAGAATGGGCAAGCCATTA 57.470 45.000 13.87 0.00 43.62 1.90
110 111 1.551883 GAACAGAATGGGCAAGCCATT 59.448 47.619 13.87 10.41 43.62 3.16
111 112 1.188863 GAACAGAATGGGCAAGCCAT 58.811 50.000 13.87 1.98 43.62 4.40
112 113 0.899717 GGAACAGAATGGGCAAGCCA 60.900 55.000 13.87 0.00 43.62 4.75
113 114 1.607801 GGGAACAGAATGGGCAAGCC 61.608 60.000 1.52 1.52 43.62 4.35
114 115 0.613012 AGGGAACAGAATGGGCAAGC 60.613 55.000 0.00 0.00 43.62 4.01
115 116 2.806945 TAGGGAACAGAATGGGCAAG 57.193 50.000 0.00 0.00 43.62 4.01
116 117 2.580322 TCATAGGGAACAGAATGGGCAA 59.420 45.455 0.00 0.00 43.62 4.52
117 118 2.204463 TCATAGGGAACAGAATGGGCA 58.796 47.619 0.00 0.00 43.62 5.36
118 119 3.297134 TTCATAGGGAACAGAATGGGC 57.703 47.619 0.00 0.00 43.62 5.36
128 129 6.327365 TCAAGCTATCTCATGTTCATAGGGAA 59.673 38.462 0.00 0.00 0.00 3.97
129 130 5.840693 TCAAGCTATCTCATGTTCATAGGGA 59.159 40.000 0.00 0.00 0.00 4.20
130 131 6.106648 TCAAGCTATCTCATGTTCATAGGG 57.893 41.667 0.00 0.00 0.00 3.53
131 132 6.988580 TGTTCAAGCTATCTCATGTTCATAGG 59.011 38.462 0.00 0.00 0.00 2.57
132 133 8.604640 ATGTTCAAGCTATCTCATGTTCATAG 57.395 34.615 0.00 0.00 0.00 2.23
133 134 7.658982 GGATGTTCAAGCTATCTCATGTTCATA 59.341 37.037 0.00 0.00 0.00 2.15
134 135 6.485984 GGATGTTCAAGCTATCTCATGTTCAT 59.514 38.462 0.00 0.00 0.00 2.57
135 136 5.819379 GGATGTTCAAGCTATCTCATGTTCA 59.181 40.000 0.00 0.00 0.00 3.18
136 137 6.054295 AGGATGTTCAAGCTATCTCATGTTC 58.946 40.000 0.00 0.00 0.00 3.18
137 138 5.999044 AGGATGTTCAAGCTATCTCATGTT 58.001 37.500 0.00 0.00 0.00 2.71
138 139 5.454471 GGAGGATGTTCAAGCTATCTCATGT 60.454 44.000 0.00 0.00 0.00 3.21
139 140 4.996122 GGAGGATGTTCAAGCTATCTCATG 59.004 45.833 0.00 0.00 0.00 3.07
140 141 4.041444 GGGAGGATGTTCAAGCTATCTCAT 59.959 45.833 0.00 0.00 0.00 2.90
141 142 3.389329 GGGAGGATGTTCAAGCTATCTCA 59.611 47.826 0.00 0.00 0.00 3.27
142 143 3.645687 AGGGAGGATGTTCAAGCTATCTC 59.354 47.826 0.00 0.00 0.00 2.75
143 144 3.663198 AGGGAGGATGTTCAAGCTATCT 58.337 45.455 0.00 0.00 0.00 1.98
144 145 4.384940 GAAGGGAGGATGTTCAAGCTATC 58.615 47.826 0.00 0.00 0.00 2.08
145 146 3.137360 GGAAGGGAGGATGTTCAAGCTAT 59.863 47.826 0.00 0.00 0.00 2.97
146 147 2.505819 GGAAGGGAGGATGTTCAAGCTA 59.494 50.000 0.00 0.00 0.00 3.32
147 148 1.283321 GGAAGGGAGGATGTTCAAGCT 59.717 52.381 0.00 0.00 0.00 3.74
148 149 1.683319 GGGAAGGGAGGATGTTCAAGC 60.683 57.143 0.00 0.00 0.00 4.01
149 150 1.918957 AGGGAAGGGAGGATGTTCAAG 59.081 52.381 0.00 0.00 0.00 3.02
150 151 1.916181 GAGGGAAGGGAGGATGTTCAA 59.084 52.381 0.00 0.00 0.00 2.69
151 152 1.203428 TGAGGGAAGGGAGGATGTTCA 60.203 52.381 0.00 0.00 0.00 3.18
152 153 1.584724 TGAGGGAAGGGAGGATGTTC 58.415 55.000 0.00 0.00 0.00 3.18
153 154 2.059756 TTGAGGGAAGGGAGGATGTT 57.940 50.000 0.00 0.00 0.00 2.71
154 155 2.059756 TTTGAGGGAAGGGAGGATGT 57.940 50.000 0.00 0.00 0.00 3.06
155 156 2.947695 GCTTTTGAGGGAAGGGAGGATG 60.948 54.545 0.00 0.00 0.00 3.51
156 157 1.286257 GCTTTTGAGGGAAGGGAGGAT 59.714 52.381 0.00 0.00 0.00 3.24
157 158 0.698818 GCTTTTGAGGGAAGGGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
158 159 0.323816 GGCTTTTGAGGGAAGGGAGG 60.324 60.000 0.00 0.00 0.00 4.30
159 160 0.701147 AGGCTTTTGAGGGAAGGGAG 59.299 55.000 0.00 0.00 0.00 4.30
160 161 1.158007 AAGGCTTTTGAGGGAAGGGA 58.842 50.000 0.00 0.00 0.00 4.20
161 162 1.620323 CAAAGGCTTTTGAGGGAAGGG 59.380 52.381 15.75 0.00 45.21 3.95
162 163 2.597455 TCAAAGGCTTTTGAGGGAAGG 58.403 47.619 19.03 0.00 45.77 3.46
170 171 8.152309 TGGTTGATAAAATTCAAAGGCTTTTG 57.848 30.769 14.74 14.74 44.03 2.44
171 172 8.620416 GTTGGTTGATAAAATTCAAAGGCTTTT 58.380 29.630 10.36 0.00 37.36 2.27
172 173 7.772757 TGTTGGTTGATAAAATTCAAAGGCTTT 59.227 29.630 6.68 6.68 37.36 3.51
173 174 7.278875 TGTTGGTTGATAAAATTCAAAGGCTT 58.721 30.769 0.00 0.00 37.36 4.35
174 175 6.825610 TGTTGGTTGATAAAATTCAAAGGCT 58.174 32.000 0.00 0.00 37.36 4.58
175 176 7.361116 CCATGTTGGTTGATAAAATTCAAAGGC 60.361 37.037 0.00 0.00 37.36 4.35
176 177 8.031848 CCATGTTGGTTGATAAAATTCAAAGG 57.968 34.615 0.00 0.00 37.36 3.11
193 194 2.872245 CGGTCTTGCTATACCATGTTGG 59.128 50.000 3.80 0.00 45.02 3.77
194 195 2.872245 CCGGTCTTGCTATACCATGTTG 59.128 50.000 0.00 0.00 35.35 3.33
195 196 2.504175 ACCGGTCTTGCTATACCATGTT 59.496 45.455 0.00 0.00 35.35 2.71
196 197 2.102588 GACCGGTCTTGCTATACCATGT 59.897 50.000 27.64 0.11 35.35 3.21
197 198 2.548067 GGACCGGTCTTGCTATACCATG 60.548 54.545 32.52 0.00 35.35 3.66
198 199 1.692519 GGACCGGTCTTGCTATACCAT 59.307 52.381 32.52 0.00 35.35 3.55
199 200 1.117150 GGACCGGTCTTGCTATACCA 58.883 55.000 32.52 0.00 35.35 3.25
200 201 1.117150 TGGACCGGTCTTGCTATACC 58.883 55.000 32.52 15.00 0.00 2.73
201 202 2.102588 ACATGGACCGGTCTTGCTATAC 59.897 50.000 32.52 14.74 0.00 1.47
202 203 2.394632 ACATGGACCGGTCTTGCTATA 58.605 47.619 32.52 11.74 0.00 1.31
203 204 1.204146 ACATGGACCGGTCTTGCTAT 58.796 50.000 32.52 16.49 0.00 2.97
204 205 0.981183 AACATGGACCGGTCTTGCTA 59.019 50.000 32.52 15.05 0.00 3.49
205 206 0.321653 GAACATGGACCGGTCTTGCT 60.322 55.000 32.52 21.18 0.00 3.91
206 207 1.635663 CGAACATGGACCGGTCTTGC 61.636 60.000 32.52 17.67 0.00 4.01
207 208 1.019278 CCGAACATGGACCGGTCTTG 61.019 60.000 32.52 28.91 38.55 3.02
208 209 1.189524 TCCGAACATGGACCGGTCTT 61.190 55.000 32.52 19.74 43.40 3.01
209 210 1.608336 TCCGAACATGGACCGGTCT 60.608 57.895 32.52 14.04 43.40 3.85
210 211 2.975536 TCCGAACATGGACCGGTC 59.024 61.111 27.04 27.04 43.40 4.79
216 217 4.495690 TGATTAATGGTCCGAACATGGA 57.504 40.909 0.00 0.00 35.04 3.41
217 218 4.821260 TGATGATTAATGGTCCGAACATGG 59.179 41.667 0.00 0.00 0.00 3.66
218 219 5.296531 TGTGATGATTAATGGTCCGAACATG 59.703 40.000 0.00 0.00 0.00 3.21
219 220 5.436175 TGTGATGATTAATGGTCCGAACAT 58.564 37.500 0.00 0.00 0.00 2.71
220 221 4.837972 TGTGATGATTAATGGTCCGAACA 58.162 39.130 0.00 0.00 0.00 3.18
221 222 5.116180 TCTGTGATGATTAATGGTCCGAAC 58.884 41.667 0.00 0.00 0.00 3.95
222 223 5.351948 TCTGTGATGATTAATGGTCCGAA 57.648 39.130 0.00 0.00 0.00 4.30
223 224 4.202253 CCTCTGTGATGATTAATGGTCCGA 60.202 45.833 0.00 0.00 0.00 4.55
224 225 4.060900 CCTCTGTGATGATTAATGGTCCG 58.939 47.826 0.00 0.00 0.00 4.79
225 226 5.296151 TCCTCTGTGATGATTAATGGTCC 57.704 43.478 0.00 0.00 0.00 4.46
226 227 7.500227 TGAAATCCTCTGTGATGATTAATGGTC 59.500 37.037 0.00 0.00 29.42 4.02
227 228 7.348815 TGAAATCCTCTGTGATGATTAATGGT 58.651 34.615 0.00 0.00 29.42 3.55
228 229 7.812690 TGAAATCCTCTGTGATGATTAATGG 57.187 36.000 0.00 0.00 29.42 3.16
229 230 9.063615 TCATGAAATCCTCTGTGATGATTAATG 57.936 33.333 0.00 0.00 29.42 1.90
230 231 9.286170 CTCATGAAATCCTCTGTGATGATTAAT 57.714 33.333 0.00 0.00 29.42 1.40
231 232 8.270030 ACTCATGAAATCCTCTGTGATGATTAA 58.730 33.333 0.00 0.00 29.42 1.40
232 233 7.713942 CACTCATGAAATCCTCTGTGATGATTA 59.286 37.037 0.00 0.00 29.42 1.75
233 234 6.542735 CACTCATGAAATCCTCTGTGATGATT 59.457 38.462 0.00 0.00 30.43 2.57
234 235 6.056236 CACTCATGAAATCCTCTGTGATGAT 58.944 40.000 0.00 0.00 0.00 2.45
253 254 3.844211 AGTAGCCCCATAGTTTTCACTCA 59.156 43.478 0.00 0.00 34.06 3.41
294 295 1.235724 AGCTCACGTTTTTGTAGGGC 58.764 50.000 0.00 0.00 0.00 5.19
330 331 0.039035 ACCCTGGCGGCAAAATCTTA 59.961 50.000 14.48 0.00 33.26 2.10
358 359 6.104665 TCTCTTGAGATTCTGCTACAACATG 58.895 40.000 0.00 0.00 0.00 3.21
360 361 5.728637 TCTCTTGAGATTCTGCTACAACA 57.271 39.130 0.00 0.00 0.00 3.33
365 366 4.958581 TGGTCATCTCTTGAGATTCTGCTA 59.041 41.667 10.14 0.00 34.17 3.49
391 392 6.432403 AACTTTTCATTTCCCTGCCAATTA 57.568 33.333 0.00 0.00 0.00 1.40
394 395 4.283212 CCTAACTTTTCATTTCCCTGCCAA 59.717 41.667 0.00 0.00 0.00 4.52
398 399 3.769300 CCCCCTAACTTTTCATTTCCCTG 59.231 47.826 0.00 0.00 0.00 4.45
400 401 3.767673 GTCCCCCTAACTTTTCATTTCCC 59.232 47.826 0.00 0.00 0.00 3.97
404 405 3.801307 ACGTCCCCCTAACTTTTCATT 57.199 42.857 0.00 0.00 0.00 2.57
412 413 2.502142 AATCCAAACGTCCCCCTAAC 57.498 50.000 0.00 0.00 0.00 2.34
413 414 2.093553 CGTAATCCAAACGTCCCCCTAA 60.094 50.000 0.00 0.00 35.66 2.69
422 423 0.391927 TCCTGGGCGTAATCCAAACG 60.392 55.000 0.00 0.00 43.12 3.60
444 445 4.133796 GCCCTGATTTGGCGTGGC 62.134 66.667 0.00 0.00 39.48 5.01
456 457 1.000731 TCAAAATTTTGGCTCGCCCTG 59.999 47.619 26.45 2.35 38.66 4.45
459 460 1.059942 CGTCAAAATTTTGGCTCGCC 58.940 50.000 27.72 0.00 40.47 5.54
461 462 2.979813 CCTTCGTCAAAATTTTGGCTCG 59.020 45.455 27.72 25.44 40.47 5.03
479 480 4.832608 GCGGGCGGTCGATTCCTT 62.833 66.667 0.00 0.00 0.00 3.36
506 507 0.601046 CAGATATCATGCCCACGCGT 60.601 55.000 5.58 5.58 38.08 6.01
510 511 3.144506 CTGGTTCAGATATCATGCCCAC 58.855 50.000 5.32 0.00 32.44 4.61
518 519 4.592485 ATGGTCGTCTGGTTCAGATATC 57.408 45.455 0.72 0.00 42.73 1.63
525 526 1.635663 CGCCAATGGTCGTCTGGTTC 61.636 60.000 0.00 0.00 32.46 3.62
527 528 2.047274 CGCCAATGGTCGTCTGGT 60.047 61.111 0.00 0.00 32.46 4.00
529 530 2.390599 CCACGCCAATGGTCGTCTG 61.391 63.158 16.39 8.59 34.45 3.51
573 579 2.046892 GACTGCATGGGTGAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
574 580 2.046988 TGACTGCATGGGTGAGCG 60.047 61.111 0.00 0.00 0.00 5.03
575 581 1.002868 ACTGACTGCATGGGTGAGC 60.003 57.895 0.00 0.00 0.00 4.26
576 582 0.322648 TGACTGACTGCATGGGTGAG 59.677 55.000 0.00 0.00 0.00 3.51
590 596 2.664916 CCAAAATCTTGGCGTTGACTG 58.335 47.619 0.00 0.00 45.67 3.51
611 617 3.702802 TGGCCGACGATTACCACT 58.297 55.556 0.00 0.00 0.00 4.00
617 623 0.828022 TTAGATGGTGGCCGACGATT 59.172 50.000 0.00 0.00 0.00 3.34
619 625 0.108520 GTTTAGATGGTGGCCGACGA 60.109 55.000 0.00 0.00 0.00 4.20
623 629 2.469516 GCCGTTTAGATGGTGGCCG 61.470 63.158 0.00 0.00 39.83 6.13
630 636 2.122783 TTGGAAGGGCCGTTTAGATG 57.877 50.000 12.81 0.00 40.66 2.90
634 640 1.320507 GTGTTTGGAAGGGCCGTTTA 58.679 50.000 12.81 2.00 40.66 2.01
639 645 0.611062 GGTAGGTGTTTGGAAGGGCC 60.611 60.000 0.00 0.00 37.10 5.80
782 805 9.216117 CCTTCGACTCCTAATTCTAAAAAGAAA 57.784 33.333 0.00 0.00 0.00 2.52
783 806 7.822822 CCCTTCGACTCCTAATTCTAAAAAGAA 59.177 37.037 0.00 0.00 0.00 2.52
784 807 7.328737 CCCTTCGACTCCTAATTCTAAAAAGA 58.671 38.462 0.00 0.00 0.00 2.52
785 808 6.037281 GCCCTTCGACTCCTAATTCTAAAAAG 59.963 42.308 0.00 0.00 0.00 2.27
787 810 5.425630 GCCCTTCGACTCCTAATTCTAAAA 58.574 41.667 0.00 0.00 0.00 1.52
788 811 4.141779 GGCCCTTCGACTCCTAATTCTAAA 60.142 45.833 0.00 0.00 0.00 1.85
789 812 3.387050 GGCCCTTCGACTCCTAATTCTAA 59.613 47.826 0.00 0.00 0.00 2.10
790 813 2.963782 GGCCCTTCGACTCCTAATTCTA 59.036 50.000 0.00 0.00 0.00 2.10
794 817 0.326238 TGGGCCCTTCGACTCCTAAT 60.326 55.000 25.70 0.00 0.00 1.73
796 819 1.381327 CTGGGCCCTTCGACTCCTA 60.381 63.158 25.70 0.00 0.00 2.94
798 821 3.787001 CCTGGGCCCTTCGACTCC 61.787 72.222 25.70 0.00 0.00 3.85
861 970 3.338250 CTGGGCTGGGTTGGGCTA 61.338 66.667 0.00 0.00 0.00 3.93
893 1011 6.393171 GGAACTAACGGCTTCTAAGTTCTAA 58.607 40.000 11.88 0.00 43.48 2.10
894 1012 5.392380 CGGAACTAACGGCTTCTAAGTTCTA 60.392 44.000 11.88 0.00 43.48 2.10
895 1013 4.617762 CGGAACTAACGGCTTCTAAGTTCT 60.618 45.833 11.88 0.00 43.48 3.01
896 1014 3.611549 CGGAACTAACGGCTTCTAAGTTC 59.388 47.826 5.22 5.22 43.32 3.01
897 1015 3.006217 ACGGAACTAACGGCTTCTAAGTT 59.994 43.478 0.00 0.00 35.23 2.66
898 1016 2.560105 ACGGAACTAACGGCTTCTAAGT 59.440 45.455 0.00 0.00 35.23 2.24
899 1017 3.177487 GACGGAACTAACGGCTTCTAAG 58.823 50.000 0.00 0.00 36.18 2.18
991 1117 1.153369 CCGCCATCATTGTCGTCCT 60.153 57.895 0.00 0.00 0.00 3.85
1056 1184 4.671569 GGGGATGCTAGAGCGCCG 62.672 72.222 2.29 0.00 45.83 6.46
1129 1257 3.273654 AGACCAGGGAGTCGGGGA 61.274 66.667 0.00 0.00 41.83 4.81
1131 1259 1.755008 GAGAGACCAGGGAGTCGGG 60.755 68.421 0.00 0.00 41.83 5.14
1132 1260 1.034838 CAGAGAGACCAGGGAGTCGG 61.035 65.000 0.00 0.00 41.83 4.79
1133 1261 0.034960 TCAGAGAGACCAGGGAGTCG 60.035 60.000 0.00 0.00 41.83 4.18
1134 1262 1.005450 ACTCAGAGAGACCAGGGAGTC 59.995 57.143 3.79 0.00 37.01 3.36
1135 1263 1.080638 ACTCAGAGAGACCAGGGAGT 58.919 55.000 3.79 0.00 33.32 3.85
1136 1264 2.025793 TGTACTCAGAGAGACCAGGGAG 60.026 54.545 3.79 0.00 33.32 4.30
1137 1265 1.993301 TGTACTCAGAGAGACCAGGGA 59.007 52.381 3.79 0.00 33.32 4.20
1141 1269 6.174720 ACAAAAATGTACTCAGAGAGACCA 57.825 37.500 3.79 0.00 33.32 4.02
1163 1291 9.178427 GTCCACAAATCGATTACTATACAGTAC 57.822 37.037 11.83 0.00 36.98 2.73
1166 1295 9.395707 GTAGTCCACAAATCGATTACTATACAG 57.604 37.037 11.83 0.00 0.00 2.74
1173 1302 6.730960 TTTGGTAGTCCACAAATCGATTAC 57.269 37.500 11.83 5.47 44.22 1.89
1186 1315 3.671716 ACTGTTCCGATTTTGGTAGTCC 58.328 45.455 0.00 0.00 0.00 3.85
1189 1318 4.566004 TCAGACTGTTCCGATTTTGGTAG 58.434 43.478 1.59 0.00 0.00 3.18
1193 1322 4.931601 TCTCATCAGACTGTTCCGATTTTG 59.068 41.667 1.59 0.00 0.00 2.44
1298 1427 1.935799 TCCACCCAATGACCCAAATG 58.064 50.000 0.00 0.00 0.00 2.32
1299 1428 2.946791 ATCCACCCAATGACCCAAAT 57.053 45.000 0.00 0.00 0.00 2.32
1300 1429 2.652348 ACTATCCACCCAATGACCCAAA 59.348 45.455 0.00 0.00 0.00 3.28
1301 1430 2.025416 CACTATCCACCCAATGACCCAA 60.025 50.000 0.00 0.00 0.00 4.12
1302 1431 1.563879 CACTATCCACCCAATGACCCA 59.436 52.381 0.00 0.00 0.00 4.51
1303 1432 1.843851 TCACTATCCACCCAATGACCC 59.156 52.381 0.00 0.00 0.00 4.46
1304 1433 3.644966 TTCACTATCCACCCAATGACC 57.355 47.619 0.00 0.00 0.00 4.02
1305 1434 6.174720 TCTATTCACTATCCACCCAATGAC 57.825 41.667 0.00 0.00 0.00 3.06
1306 1435 6.183361 CCTTCTATTCACTATCCACCCAATGA 60.183 42.308 0.00 0.00 0.00 2.57
1307 1436 6.000219 CCTTCTATTCACTATCCACCCAATG 59.000 44.000 0.00 0.00 0.00 2.82
1308 1437 5.672194 ACCTTCTATTCACTATCCACCCAAT 59.328 40.000 0.00 0.00 0.00 3.16
1309 1438 5.036916 ACCTTCTATTCACTATCCACCCAA 58.963 41.667 0.00 0.00 0.00 4.12
1310 1439 4.631234 ACCTTCTATTCACTATCCACCCA 58.369 43.478 0.00 0.00 0.00 4.51
1311 1440 4.654262 TGACCTTCTATTCACTATCCACCC 59.346 45.833 0.00 0.00 0.00 4.61
1312 1441 5.740513 GCTGACCTTCTATTCACTATCCACC 60.741 48.000 0.00 0.00 0.00 4.61
1313 1442 5.293560 GCTGACCTTCTATTCACTATCCAC 58.706 45.833 0.00 0.00 0.00 4.02
1314 1443 4.038042 CGCTGACCTTCTATTCACTATCCA 59.962 45.833 0.00 0.00 0.00 3.41
1332 1461 1.134098 GGGGAATCCAATTCTCGCTGA 60.134 52.381 0.09 0.00 40.73 4.26
1355 1484 1.266989 CGGTTCTGTTCTTTTCTGCCC 59.733 52.381 0.00 0.00 0.00 5.36
1374 1503 9.400638 CTAGAACTAGAGCAAATAACTAATCCG 57.599 37.037 0.00 0.00 35.21 4.18
1388 1517 4.274978 AGGTCCAAGTCTAGAACTAGAGC 58.725 47.826 11.22 5.46 42.31 4.09
1389 1518 5.502079 TGAGGTCCAAGTCTAGAACTAGAG 58.498 45.833 11.22 1.68 42.31 2.43
1455 1585 1.724582 AAGAGCAAACACACCGCCAC 61.725 55.000 0.00 0.00 0.00 5.01
1458 1588 1.226746 AGTAAGAGCAAACACACCGC 58.773 50.000 0.00 0.00 0.00 5.68
1460 1590 6.199393 CAACTAAAGTAAGAGCAAACACACC 58.801 40.000 0.00 0.00 0.00 4.16
1462 1592 5.220970 GCCAACTAAAGTAAGAGCAAACACA 60.221 40.000 0.00 0.00 0.00 3.72
1500 1630 1.686587 GTTTTACAGCCAAACAGCCCT 59.313 47.619 0.00 0.00 34.74 5.19
1542 1672 8.641499 TGCTTCCTTAATAACAACAACAAAAG 57.359 30.769 0.00 0.00 0.00 2.27
1720 1851 8.770322 TGCCTACTGGTACCACTTATTTATTTA 58.230 33.333 11.60 0.00 35.27 1.40
1724 1856 5.395990 GCTGCCTACTGGTACCACTTATTTA 60.396 44.000 11.60 0.00 35.27 1.40
1733 1865 2.202892 GCGCTGCCTACTGGTACC 60.203 66.667 4.43 4.43 35.27 3.34
1746 1878 2.203153 AGGAAACACGTTGGCGCT 60.203 55.556 7.64 0.00 42.83 5.92
1815 1949 5.646606 TCTTGAGTAAAACAAGTGCAAACC 58.353 37.500 0.00 0.00 43.30 3.27
1877 2034 3.446442 AATCAAGATGGGAAGCTGTGT 57.554 42.857 0.00 0.00 0.00 3.72
2009 2173 6.886459 TGCTTTTGGAAGTAGAGCAGAATATT 59.114 34.615 0.00 0.00 38.33 1.28
2206 2374 4.445385 GCATCAACCAAAAAGTACAAGCAG 59.555 41.667 0.00 0.00 0.00 4.24
2228 2396 6.421405 CAAACTTAAAAGCTTGTTCAATGGC 58.579 36.000 0.00 0.00 29.76 4.40
2254 2422 6.808212 TCACTGTTGTTAGCTTTACGGTATAC 59.192 38.462 0.00 0.00 0.00 1.47
2258 2426 4.062677 TCACTGTTGTTAGCTTTACGGT 57.937 40.909 0.00 0.00 0.00 4.83
2261 2429 4.023450 GGGGTTCACTGTTGTTAGCTTTAC 60.023 45.833 0.00 0.00 0.00 2.01
2284 2452 2.649331 AACTGAGTCCGTACAATCCG 57.351 50.000 0.00 0.00 0.00 4.18
2294 2462 5.123936 GGGGACAACATATTAACTGAGTCC 58.876 45.833 17.79 17.79 39.43 3.85
2541 2728 6.153170 AGCAAACATGATCATCAATTGGTGTA 59.847 34.615 18.05 6.01 32.26 2.90
2571 2758 1.340889 TCCCATGCAACAGAAAACAGC 59.659 47.619 0.00 0.00 0.00 4.40
2957 3350 9.780186 TTGACTAGATAATCAAGACGAGAGATA 57.220 33.333 0.00 0.00 31.29 1.98
2958 3351 8.684386 TTGACTAGATAATCAAGACGAGAGAT 57.316 34.615 0.00 0.00 31.29 2.75
2959 3352 8.684386 ATTGACTAGATAATCAAGACGAGAGA 57.316 34.615 0.00 0.00 38.19 3.10
2960 3353 9.179552 CAATTGACTAGATAATCAAGACGAGAG 57.820 37.037 0.00 0.00 38.19 3.20
2961 3354 8.687242 ACAATTGACTAGATAATCAAGACGAGA 58.313 33.333 13.59 0.00 38.19 4.04
2964 3357 8.873830 ACAACAATTGACTAGATAATCAAGACG 58.126 33.333 13.59 0.00 38.19 4.18
3079 3507 5.575606 GTGTACTAAGCAACTAAATCGCTCA 59.424 40.000 0.00 0.00 34.11 4.26
3127 3558 1.464608 CCGTCCAATACTTGTGTGCAG 59.535 52.381 0.00 0.00 0.00 4.41
3142 3573 2.609459 CAGACATGTATCAAAGCCGTCC 59.391 50.000 0.00 0.00 0.00 4.79
3711 4154 3.819564 TTGTCTGTGTAGCACTTCACT 57.180 42.857 8.58 0.00 35.11 3.41
3726 4169 7.993183 CCACTCCATATTGTTATACCTTTGTCT 59.007 37.037 0.00 0.00 0.00 3.41
3873 4316 4.376146 GAGGCAGTAGCTTCTCATTTAGG 58.624 47.826 0.00 0.00 43.00 2.69
4296 4762 7.214467 AGAGCTGTACATCTCTTAGCTTATC 57.786 40.000 20.87 2.81 44.11 1.75
4416 4888 6.714810 TGTGATTAAACAGCATTACAGGACTT 59.285 34.615 0.00 0.00 0.00 3.01
4418 4890 6.072728 TGTGTGATTAAACAGCATTACAGGAC 60.073 38.462 0.00 0.00 0.00 3.85
4452 4951 9.482175 AGAGGAGAAAACAGACTAGTTGTATAT 57.518 33.333 0.00 0.00 0.00 0.86
4453 4952 8.880991 AGAGGAGAAAACAGACTAGTTGTATA 57.119 34.615 0.00 0.00 0.00 1.47
4454 4953 7.784470 AGAGGAGAAAACAGACTAGTTGTAT 57.216 36.000 0.00 0.00 0.00 2.29
4673 5172 3.763356 TCGACGCTCCTGCATGCT 61.763 61.111 20.33 0.00 39.64 3.79
4676 5175 2.125912 GTGTCGACGCTCCTGCAT 60.126 61.111 21.55 0.00 39.64 3.96
4742 5241 1.447489 CTTCACGAGCAGAGCCCTG 60.447 63.158 0.00 0.00 43.22 4.45
5084 5590 3.736224 CCCATGGAGCTGCACCCT 61.736 66.667 15.22 0.46 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.