Multiple sequence alignment - TraesCS2D01G395400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G395400 chr2D 100.000 2926 0 0 1 2926 506760118 506757193 0.000000e+00 5404.0
1 TraesCS2D01G395400 chr2D 89.824 796 62 15 1200 1988 506652056 506651273 0.000000e+00 1003.0
2 TraesCS2D01G395400 chr2D 81.361 1073 97 42 919 1937 506525015 506523992 0.000000e+00 778.0
3 TraesCS2D01G395400 chr2D 95.376 173 8 0 1 173 532818489 532818661 2.870000e-70 276.0
4 TraesCS2D01G395400 chr2A 89.717 2470 159 38 155 2582 651511532 651509116 0.000000e+00 3066.0
5 TraesCS2D01G395400 chr2A 86.329 790 55 23 1232 1985 651505538 651504766 0.000000e+00 811.0
6 TraesCS2D01G395400 chr2A 80.669 1076 111 49 919 1937 651396651 651395616 0.000000e+00 745.0
7 TraesCS2D01G395400 chr2A 80.576 1076 112 50 919 1937 651445321 651444286 0.000000e+00 739.0
8 TraesCS2D01G395400 chr2A 91.176 170 9 3 2625 2792 651509115 651508950 2.930000e-55 226.0
9 TraesCS2D01G395400 chr2A 97.872 47 1 0 62 108 728234523 728234477 6.720000e-12 82.4
10 TraesCS2D01G395400 chr2B 88.649 1850 100 48 234 2046 594684910 594683134 0.000000e+00 2152.0
11 TraesCS2D01G395400 chr2B 88.034 819 60 17 1200 1985 594261592 594260779 0.000000e+00 935.0
12 TraesCS2D01G395400 chr2B 80.563 1065 108 50 926 1933 594205822 594204800 0.000000e+00 728.0
13 TraesCS2D01G395400 chr2B 88.153 498 39 11 2435 2926 594678325 594677842 2.530000e-160 575.0
14 TraesCS2D01G395400 chr2B 93.182 220 15 0 2194 2413 594683044 594682825 1.010000e-84 324.0
15 TraesCS2D01G395400 chr2B 93.548 62 3 1 2102 2163 594683102 594683042 1.120000e-14 91.6
16 TraesCS2D01G395400 chrUn 80.576 1076 112 50 919 1937 323408392 323409427 0.000000e+00 739.0
17 TraesCS2D01G395400 chrUn 97.778 45 1 0 62 106 386165416 386165460 8.690000e-11 78.7
18 TraesCS2D01G395400 chr7B 100.000 45 0 0 62 106 26010557 26010513 1.870000e-12 84.2
19 TraesCS2D01G395400 chr7B 100.000 45 0 0 62 106 639857595 639857639 1.870000e-12 84.2
20 TraesCS2D01G395400 chr7B 100.000 43 0 0 62 104 721426591 721426633 2.420000e-11 80.5
21 TraesCS2D01G395400 chr7B 97.778 45 1 0 62 106 625710849 625710893 8.690000e-11 78.7
22 TraesCS2D01G395400 chr6B 100.000 45 0 0 62 106 671865067 671865023 1.870000e-12 84.2
23 TraesCS2D01G395400 chr6B 91.489 47 2 2 1 45 257748349 257748395 2.430000e-06 63.9
24 TraesCS2D01G395400 chr5B 100.000 45 0 0 62 106 369338199 369338155 1.870000e-12 84.2
25 TraesCS2D01G395400 chr5A 97.561 41 0 1 1 40 272691167 272691127 5.230000e-08 69.4
26 TraesCS2D01G395400 chr5A 97.561 41 0 1 1 40 431078651 431078611 5.230000e-08 69.4
27 TraesCS2D01G395400 chr4A 97.500 40 0 1 1 40 286502902 286502864 1.880000e-07 67.6
28 TraesCS2D01G395400 chr4A 91.667 48 2 2 1 46 148333727 148333680 6.770000e-07 65.8
29 TraesCS2D01G395400 chr3D 95.349 43 0 2 1 41 305687355 305687397 1.880000e-07 67.6
30 TraesCS2D01G395400 chr1A 97.500 40 0 1 1 39 385713718 385713757 1.880000e-07 67.6
31 TraesCS2D01G395400 chr4D 91.304 46 2 2 1 46 16316553 16316596 8.760000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G395400 chr2D 506757193 506760118 2925 True 5404.000000 5404 100.000 1 2926 1 chr2D.!!$R3 2925
1 TraesCS2D01G395400 chr2D 506651273 506652056 783 True 1003.000000 1003 89.824 1200 1988 1 chr2D.!!$R2 788
2 TraesCS2D01G395400 chr2D 506523992 506525015 1023 True 778.000000 778 81.361 919 1937 1 chr2D.!!$R1 1018
3 TraesCS2D01G395400 chr2A 651504766 651511532 6766 True 1367.666667 3066 89.074 155 2792 3 chr2A.!!$R4 2637
4 TraesCS2D01G395400 chr2A 651395616 651396651 1035 True 745.000000 745 80.669 919 1937 1 chr2A.!!$R1 1018
5 TraesCS2D01G395400 chr2A 651444286 651445321 1035 True 739.000000 739 80.576 919 1937 1 chr2A.!!$R2 1018
6 TraesCS2D01G395400 chr2B 594260779 594261592 813 True 935.000000 935 88.034 1200 1985 1 chr2B.!!$R2 785
7 TraesCS2D01G395400 chr2B 594682825 594684910 2085 True 855.866667 2152 91.793 234 2413 3 chr2B.!!$R4 2179
8 TraesCS2D01G395400 chr2B 594204800 594205822 1022 True 728.000000 728 80.563 926 1933 1 chr2B.!!$R1 1007
9 TraesCS2D01G395400 chrUn 323408392 323409427 1035 False 739.000000 739 80.576 919 1937 1 chrUn.!!$F1 1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.099791 CGGCAACCAAACACGTCTTT 59.900 50.0 0.00 0.0 0.00 2.52 F
152 153 0.107897 AAAGACAGGACACACGTGCA 60.108 50.0 17.22 0.0 37.84 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1072 0.032615 AGGAGCTCGAGAGGTGGATT 60.033 55.0 18.75 0.0 39.57 3.01 R
2034 2157 0.036388 GGAACGGCTGATCACAAGGA 60.036 55.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.542462 TGATATAAGGAAATTAAAGACAGGACG 57.458 33.333 0.00 0.00 0.00 4.79
45 46 6.679327 ATAAGGAAATTAAAGACAGGACGC 57.321 37.500 0.00 0.00 0.00 5.19
46 47 4.015872 AGGAAATTAAAGACAGGACGCA 57.984 40.909 0.00 0.00 0.00 5.24
47 48 3.751698 AGGAAATTAAAGACAGGACGCAC 59.248 43.478 0.00 0.00 0.00 5.34
48 49 3.424433 GGAAATTAAAGACAGGACGCACG 60.424 47.826 0.00 0.00 0.00 5.34
49 50 2.450609 ATTAAAGACAGGACGCACGT 57.549 45.000 0.00 0.00 0.00 4.49
50 51 1.493772 TTAAAGACAGGACGCACGTG 58.506 50.000 12.28 12.28 39.84 4.49
51 52 0.942410 TAAAGACAGGACGCACGTGC 60.942 55.000 30.42 30.42 37.84 5.34
52 53 2.916502 AAAGACAGGACGCACGTGCA 62.917 55.000 37.03 0.00 42.21 4.57
53 54 2.916502 AAGACAGGACGCACGTGCAA 62.917 55.000 37.03 0.00 42.21 4.08
54 55 2.512745 ACAGGACGCACGTGCAAA 60.513 55.556 37.03 0.00 42.21 3.68
55 56 1.841663 GACAGGACGCACGTGCAAAT 61.842 55.000 37.03 23.32 42.21 2.32
56 57 1.282570 CAGGACGCACGTGCAAATT 59.717 52.632 37.03 19.68 42.21 1.82
57 58 0.725784 CAGGACGCACGTGCAAATTC 60.726 55.000 37.03 25.57 42.21 2.17
58 59 0.884704 AGGACGCACGTGCAAATTCT 60.885 50.000 37.03 23.56 42.21 2.40
59 60 0.793861 GGACGCACGTGCAAATTCTA 59.206 50.000 37.03 0.00 42.21 2.10
60 61 1.195900 GGACGCACGTGCAAATTCTAA 59.804 47.619 37.03 0.00 42.21 2.10
61 62 2.350007 GGACGCACGTGCAAATTCTAAA 60.350 45.455 37.03 0.00 42.21 1.85
62 63 3.293262 GACGCACGTGCAAATTCTAAAA 58.707 40.909 37.03 0.00 42.21 1.52
63 64 3.296628 ACGCACGTGCAAATTCTAAAAG 58.703 40.909 37.03 19.67 42.21 2.27
64 65 3.242936 ACGCACGTGCAAATTCTAAAAGT 60.243 39.130 37.03 20.31 42.21 2.66
65 66 3.117832 CGCACGTGCAAATTCTAAAAGTG 59.882 43.478 37.03 13.98 42.21 3.16
66 67 4.041723 GCACGTGCAAATTCTAAAAGTGT 58.958 39.130 34.52 0.00 41.59 3.55
67 68 5.209240 GCACGTGCAAATTCTAAAAGTGTA 58.791 37.500 34.52 0.00 41.59 2.90
68 69 5.856455 GCACGTGCAAATTCTAAAAGTGTAT 59.144 36.000 34.52 0.00 41.59 2.29
69 70 6.183359 GCACGTGCAAATTCTAAAAGTGTATG 60.183 38.462 34.52 0.00 41.59 2.39
70 71 5.856455 ACGTGCAAATTCTAAAAGTGTATGC 59.144 36.000 0.00 0.00 0.00 3.14
71 72 5.002468 CGTGCAAATTCTAAAAGTGTATGCG 59.998 40.000 0.00 0.00 34.16 4.73
72 73 6.083630 GTGCAAATTCTAAAAGTGTATGCGA 58.916 36.000 0.00 0.00 34.16 5.10
73 74 6.747280 GTGCAAATTCTAAAAGTGTATGCGAT 59.253 34.615 0.00 0.00 34.16 4.58
74 75 6.746822 TGCAAATTCTAAAAGTGTATGCGATG 59.253 34.615 0.00 0.00 34.16 3.84
75 76 6.291269 GCAAATTCTAAAAGTGTATGCGATGC 60.291 38.462 0.00 0.00 0.00 3.91
76 77 6.435430 AATTCTAAAAGTGTATGCGATGCA 57.565 33.333 0.00 0.00 44.86 3.96
77 78 5.469373 TTCTAAAAGTGTATGCGATGCAG 57.531 39.130 0.00 0.00 43.65 4.41
78 79 3.871006 TCTAAAAGTGTATGCGATGCAGG 59.129 43.478 0.00 0.00 43.65 4.85
79 80 0.734889 AAAGTGTATGCGATGCAGGC 59.265 50.000 5.63 5.63 43.65 4.85
80 81 0.392863 AAGTGTATGCGATGCAGGCA 60.393 50.000 16.41 16.41 43.65 4.75
81 82 1.091771 AGTGTATGCGATGCAGGCAC 61.092 55.000 16.42 15.83 43.65 5.01
82 83 1.091771 GTGTATGCGATGCAGGCACT 61.092 55.000 16.42 9.23 43.65 4.40
93 94 4.379174 AGGCACTGTAGCAAACGG 57.621 55.556 4.98 0.00 37.18 4.44
94 95 1.966451 AGGCACTGTAGCAAACGGC 60.966 57.895 0.00 0.00 39.97 5.68
95 96 2.674563 AGGCACTGTAGCAAACGGCA 62.675 55.000 0.00 0.00 41.97 5.69
103 104 4.504132 GCAAACGGCAACCAAACA 57.496 50.000 0.00 0.00 43.97 2.83
104 105 2.002899 GCAAACGGCAACCAAACAC 58.997 52.632 0.00 0.00 43.97 3.32
105 106 1.747686 GCAAACGGCAACCAAACACG 61.748 55.000 0.00 0.00 43.97 4.49
106 107 0.456995 CAAACGGCAACCAAACACGT 60.457 50.000 0.00 0.00 39.74 4.49
107 108 0.179158 AAACGGCAACCAAACACGTC 60.179 50.000 0.00 0.00 36.69 4.34
108 109 1.027792 AACGGCAACCAAACACGTCT 61.028 50.000 0.00 0.00 36.69 4.18
109 110 1.027792 ACGGCAACCAAACACGTCTT 61.028 50.000 0.00 0.00 31.39 3.01
110 111 0.099791 CGGCAACCAAACACGTCTTT 59.900 50.000 0.00 0.00 0.00 2.52
111 112 1.468395 CGGCAACCAAACACGTCTTTT 60.468 47.619 0.00 0.00 0.00 2.27
112 113 2.223294 CGGCAACCAAACACGTCTTTTA 60.223 45.455 0.00 0.00 0.00 1.52
113 114 3.368495 GGCAACCAAACACGTCTTTTAG 58.632 45.455 0.00 0.00 0.00 1.85
114 115 3.181494 GGCAACCAAACACGTCTTTTAGT 60.181 43.478 0.00 0.00 0.00 2.24
115 116 4.035441 GGCAACCAAACACGTCTTTTAGTA 59.965 41.667 0.00 0.00 0.00 1.82
116 117 4.965762 GCAACCAAACACGTCTTTTAGTAC 59.034 41.667 0.00 0.00 0.00 2.73
117 118 5.504392 CAACCAAACACGTCTTTTAGTACC 58.496 41.667 0.00 0.00 0.00 3.34
118 119 4.768583 ACCAAACACGTCTTTTAGTACCA 58.231 39.130 0.00 0.00 0.00 3.25
119 120 4.571984 ACCAAACACGTCTTTTAGTACCAC 59.428 41.667 0.00 0.00 0.00 4.16
120 121 4.571580 CCAAACACGTCTTTTAGTACCACA 59.428 41.667 0.00 0.00 0.00 4.17
121 122 5.237779 CCAAACACGTCTTTTAGTACCACAT 59.762 40.000 0.00 0.00 0.00 3.21
122 123 6.424509 CCAAACACGTCTTTTAGTACCACATA 59.575 38.462 0.00 0.00 0.00 2.29
123 124 7.359765 CCAAACACGTCTTTTAGTACCACATAG 60.360 40.741 0.00 0.00 0.00 2.23
124 125 6.579666 ACACGTCTTTTAGTACCACATAGA 57.420 37.500 0.00 0.00 0.00 1.98
125 126 6.385033 ACACGTCTTTTAGTACCACATAGAC 58.615 40.000 0.00 0.00 0.00 2.59
126 127 5.803967 CACGTCTTTTAGTACCACATAGACC 59.196 44.000 0.00 0.00 0.00 3.85
127 128 5.032863 CGTCTTTTAGTACCACATAGACCG 58.967 45.833 0.00 0.00 0.00 4.79
128 129 5.163723 CGTCTTTTAGTACCACATAGACCGA 60.164 44.000 0.00 0.00 0.00 4.69
129 130 6.459298 CGTCTTTTAGTACCACATAGACCGAT 60.459 42.308 0.00 0.00 0.00 4.18
130 131 7.263496 GTCTTTTAGTACCACATAGACCGATT 58.737 38.462 0.00 0.00 0.00 3.34
131 132 8.408601 GTCTTTTAGTACCACATAGACCGATTA 58.591 37.037 0.00 0.00 0.00 1.75
132 133 9.139734 TCTTTTAGTACCACATAGACCGATTAT 57.860 33.333 0.00 0.00 0.00 1.28
137 138 8.701908 AGTACCACATAGACCGATTATAAAGA 57.298 34.615 0.00 0.00 0.00 2.52
138 139 8.574737 AGTACCACATAGACCGATTATAAAGAC 58.425 37.037 0.00 0.00 0.00 3.01
139 140 7.356089 ACCACATAGACCGATTATAAAGACA 57.644 36.000 0.00 0.00 0.00 3.41
140 141 7.434492 ACCACATAGACCGATTATAAAGACAG 58.566 38.462 0.00 0.00 0.00 3.51
141 142 6.868864 CCACATAGACCGATTATAAAGACAGG 59.131 42.308 0.00 0.00 0.00 4.00
142 143 7.255836 CCACATAGACCGATTATAAAGACAGGA 60.256 40.741 0.00 0.00 0.00 3.86
143 144 7.595502 CACATAGACCGATTATAAAGACAGGAC 59.404 40.741 0.00 0.00 0.00 3.85
144 145 7.287005 ACATAGACCGATTATAAAGACAGGACA 59.713 37.037 0.00 0.00 0.00 4.02
145 146 5.903810 AGACCGATTATAAAGACAGGACAC 58.096 41.667 0.00 0.00 0.00 3.67
146 147 5.421056 AGACCGATTATAAAGACAGGACACA 59.579 40.000 0.00 0.00 0.00 3.72
147 148 5.416947 ACCGATTATAAAGACAGGACACAC 58.583 41.667 0.00 0.00 0.00 3.82
148 149 4.503007 CCGATTATAAAGACAGGACACACG 59.497 45.833 0.00 0.00 0.00 4.49
149 150 5.100259 CGATTATAAAGACAGGACACACGT 58.900 41.667 0.00 0.00 0.00 4.49
150 151 5.004440 CGATTATAAAGACAGGACACACGTG 59.996 44.000 15.48 15.48 39.84 4.49
151 152 1.860676 TAAAGACAGGACACACGTGC 58.139 50.000 17.22 0.00 37.84 5.34
152 153 0.107897 AAAGACAGGACACACGTGCA 60.108 50.000 17.22 0.00 37.84 4.57
153 154 0.107897 AAGACAGGACACACGTGCAA 60.108 50.000 17.22 0.00 37.84 4.08
158 159 2.946329 ACAGGACACACGTGCAAATTTA 59.054 40.909 17.22 0.00 37.84 1.40
165 166 8.682710 AGGACACACGTGCAAATTTATAAATAT 58.317 29.630 17.22 0.01 35.57 1.28
166 167 8.742188 GGACACACGTGCAAATTTATAAATATG 58.258 33.333 17.22 2.68 32.83 1.78
174 175 9.677567 GTGCAAATTTATAAATATGTGACGGAT 57.322 29.630 11.07 0.00 0.00 4.18
189 190 5.411361 TGTGACGGATGAAAATTTAGGACTG 59.589 40.000 0.00 0.00 0.00 3.51
191 192 6.316390 GTGACGGATGAAAATTTAGGACTGAT 59.684 38.462 0.00 0.00 0.00 2.90
229 230 4.457466 ACACACCGCCCTTTAATATTAGG 58.543 43.478 0.00 0.00 0.00 2.69
232 233 5.467735 CACACCGCCCTTTAATATTAGGTAC 59.532 44.000 4.01 0.00 0.00 3.34
233 234 5.367644 ACACCGCCCTTTAATATTAGGTACT 59.632 40.000 4.01 0.00 46.37 2.73
234 235 5.930569 CACCGCCCTTTAATATTAGGTACTC 59.069 44.000 4.01 0.00 41.75 2.59
415 432 2.621055 TCGTGGTTTCAGTCAAATTGGG 59.379 45.455 0.00 0.00 0.00 4.12
451 478 4.525912 TGATGTCGTATGGGATCATCAG 57.474 45.455 0.00 0.00 39.53 2.90
456 483 3.068165 GTCGTATGGGATCATCAGTGTCA 59.932 47.826 0.00 0.00 34.96 3.58
457 484 3.704061 TCGTATGGGATCATCAGTGTCAA 59.296 43.478 0.00 0.00 34.96 3.18
458 485 4.161377 TCGTATGGGATCATCAGTGTCAAA 59.839 41.667 0.00 0.00 34.96 2.69
459 486 4.271049 CGTATGGGATCATCAGTGTCAAAC 59.729 45.833 0.00 0.00 34.96 2.93
460 487 3.786368 TGGGATCATCAGTGTCAAACA 57.214 42.857 0.00 0.00 0.00 2.83
461 488 4.305539 TGGGATCATCAGTGTCAAACAT 57.694 40.909 0.00 0.00 0.00 2.71
490 517 8.357402 ACATGGTTTAAAGTCGATAAAAGCTTT 58.643 29.630 5.69 5.69 35.62 3.51
494 521 9.406828 GGTTTAAAGTCGATAAAAGCTTTCAAT 57.593 29.630 13.10 9.35 33.78 2.57
510 537 5.048782 GCTTTCAATATTCCGCCATACATCA 60.049 40.000 0.00 0.00 0.00 3.07
538 570 1.317613 AATTTCGGAGCTGTGCACAA 58.682 45.000 21.98 3.20 0.00 3.33
678 710 2.097825 GGCAAATCAACAGCCTCTCAT 58.902 47.619 0.00 0.00 44.92 2.90
721 754 1.599797 GAACACCGGGGAGTGGTTG 60.600 63.158 12.96 0.00 37.95 3.77
742 775 4.506255 CGCCCAACCCATCCCTCC 62.506 72.222 0.00 0.00 0.00 4.30
801 834 2.979649 GGAGTTCACCGACCCTCC 59.020 66.667 0.00 0.00 36.98 4.30
866 902 2.512515 GGCGCACACTGATCCTCC 60.513 66.667 10.83 0.00 0.00 4.30
872 908 2.362369 ACACTGATCCTCCCGCCAG 61.362 63.158 0.00 0.00 0.00 4.85
898 935 4.838152 CCACCATCCGACGGCCAG 62.838 72.222 9.66 1.93 0.00 4.85
956 994 3.395702 ACCGCCGTCCAGCCAATA 61.396 61.111 0.00 0.00 0.00 1.90
1019 1057 4.795308 GCGTGTATAAATAAGCCTCGACCT 60.795 45.833 0.00 0.00 0.00 3.85
1034 1072 1.306141 ACCTGGCCCTCTCGAATCA 60.306 57.895 0.00 0.00 0.00 2.57
1058 1096 1.528309 CCTCTCGAGCTCCTCCTCC 60.528 68.421 7.81 0.00 0.00 4.30
1059 1097 1.531748 CTCTCGAGCTCCTCCTCCT 59.468 63.158 7.81 0.00 0.00 3.69
1060 1098 0.535102 CTCTCGAGCTCCTCCTCCTC 60.535 65.000 7.81 0.00 0.00 3.71
1061 1099 1.528309 CTCGAGCTCCTCCTCCTCC 60.528 68.421 8.47 0.00 0.00 4.30
1062 1100 1.994885 CTCGAGCTCCTCCTCCTCCT 61.995 65.000 8.47 0.00 0.00 3.69
1063 1101 1.528309 CGAGCTCCTCCTCCTCCTC 60.528 68.421 8.47 0.00 0.00 3.71
1064 1102 1.152546 GAGCTCCTCCTCCTCCTCC 60.153 68.421 0.87 0.00 0.00 4.30
1097 1136 3.041940 ACACCGCGCAAGTAGCAC 61.042 61.111 8.75 0.00 46.13 4.40
1098 1137 3.788766 CACCGCGCAAGTAGCACC 61.789 66.667 8.75 0.00 46.13 5.01
1110 1149 0.438830 GTAGCACCGCTTCAGTTTCG 59.561 55.000 0.00 0.00 40.44 3.46
1132 1171 0.244994 TTCAGAGCTCCGCTTCAGTC 59.755 55.000 10.93 0.00 39.88 3.51
1136 1175 2.224495 GAGCTCCGCTTCAGTCAGCT 62.224 60.000 0.87 0.00 43.22 4.24
1262 1301 2.951101 CGCCCACCCGACCTACTTT 61.951 63.158 0.00 0.00 0.00 2.66
1317 1373 5.244626 CCCTCTGATTGAATGGTTTTGACTT 59.755 40.000 0.00 0.00 0.00 3.01
1338 1394 1.610522 CGATTGGGGCTGATTGGATTC 59.389 52.381 0.00 0.00 0.00 2.52
1647 1735 0.737715 CCGAGAAGCCCAAGAAGACG 60.738 60.000 0.00 0.00 0.00 4.18
1985 2099 6.645790 ACTCTGAAATGAATCTGCAGTTTT 57.354 33.333 14.67 8.97 0.00 2.43
2011 2125 4.220382 TCACCATACAAGCAATTTCCCAAG 59.780 41.667 0.00 0.00 0.00 3.61
2024 2147 3.268034 TTCCCAAGCCCCAGTTTTATT 57.732 42.857 0.00 0.00 0.00 1.40
2027 2150 3.335484 TCCCAAGCCCCAGTTTTATTACT 59.665 43.478 0.00 0.00 0.00 2.24
2028 2151 3.447229 CCCAAGCCCCAGTTTTATTACTG 59.553 47.826 0.00 0.00 44.07 2.74
2033 2156 3.128764 GCCCCAGTTTTATTACTGTCTGC 59.871 47.826 0.00 0.00 43.17 4.26
2034 2157 4.589908 CCCCAGTTTTATTACTGTCTGCT 58.410 43.478 0.00 0.00 43.17 4.24
2046 2169 2.028294 ACTGTCTGCTCCTTGTGATCAG 60.028 50.000 0.00 0.00 38.34 2.90
2047 2170 1.338484 TGTCTGCTCCTTGTGATCAGC 60.338 52.381 0.00 0.00 37.19 4.26
2048 2171 0.251354 TCTGCTCCTTGTGATCAGCC 59.749 55.000 0.00 0.00 37.19 4.85
2052 2175 1.363744 CTCCTTGTGATCAGCCGTTC 58.636 55.000 0.00 0.00 0.00 3.95
2054 2177 0.036010 CCTTGTGATCAGCCGTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
2069 2192 4.386711 CCGTTCCTCAATCCCTATTTACC 58.613 47.826 0.00 0.00 0.00 2.85
2072 2195 5.298347 GTTCCTCAATCCCTATTTACCTCG 58.702 45.833 0.00 0.00 0.00 4.63
2082 2205 9.565090 AATCCCTATTTACCTCGGTTTTATTAC 57.435 33.333 0.00 0.00 0.00 1.89
2083 2206 8.322905 TCCCTATTTACCTCGGTTTTATTACT 57.677 34.615 0.00 0.00 0.00 2.24
2087 2210 9.813446 CTATTTACCTCGGTTTTATTACTGTCT 57.187 33.333 0.00 0.00 0.00 3.41
2088 2211 7.894376 TTTACCTCGGTTTTATTACTGTCTG 57.106 36.000 0.00 0.00 0.00 3.51
2091 2214 4.092968 CCTCGGTTTTATTACTGTCTGTGC 59.907 45.833 0.00 0.00 0.00 4.57
2092 2215 3.998341 TCGGTTTTATTACTGTCTGTGCC 59.002 43.478 0.00 0.00 0.00 5.01
2093 2216 4.000988 CGGTTTTATTACTGTCTGTGCCT 58.999 43.478 0.00 0.00 0.00 4.75
2094 2217 4.454504 CGGTTTTATTACTGTCTGTGCCTT 59.545 41.667 0.00 0.00 0.00 4.35
2095 2218 5.616866 CGGTTTTATTACTGTCTGTGCCTTG 60.617 44.000 0.00 0.00 0.00 3.61
2096 2219 5.240844 GGTTTTATTACTGTCTGTGCCTTGT 59.759 40.000 0.00 0.00 0.00 3.16
2097 2220 5.940192 TTTATTACTGTCTGTGCCTTGTG 57.060 39.130 0.00 0.00 0.00 3.33
2098 2221 3.769739 ATTACTGTCTGTGCCTTGTGA 57.230 42.857 0.00 0.00 0.00 3.58
2099 2222 3.769739 TTACTGTCTGTGCCTTGTGAT 57.230 42.857 0.00 0.00 0.00 3.06
2100 2223 2.175878 ACTGTCTGTGCCTTGTGATC 57.824 50.000 0.00 0.00 0.00 2.92
2119 2242 8.491331 TGTGATCATTCGTCTTCAATTTGATA 57.509 30.769 0.00 0.00 0.00 2.15
2174 2297 3.014623 GTTTTCCTTCTGGTTATCCCCG 58.985 50.000 0.00 0.00 34.23 5.73
2194 2317 3.206150 CGGCATCTGCTTATGTACCTTT 58.794 45.455 1.70 0.00 41.70 3.11
2227 2351 0.103026 TGATCTCTGTTCGCCATCCG 59.897 55.000 0.00 0.00 38.61 4.18
2240 2364 3.056678 TCGCCATCCGTTTGTTAGTTCTA 60.057 43.478 0.00 0.00 38.35 2.10
2262 2386 7.170965 TCTATTCTTATCCCAATTCATCAGGC 58.829 38.462 0.00 0.00 0.00 4.85
2278 2402 1.737793 CAGGCAGGGTATCGTTGTTTC 59.262 52.381 0.00 0.00 0.00 2.78
2298 2422 5.767816 TTCTTTCACTTGCCTTAGAAACC 57.232 39.130 0.00 0.00 0.00 3.27
2359 2483 1.395954 GTACGATTCCTTTTCCGTGCC 59.604 52.381 0.00 0.00 36.58 5.01
2413 2539 3.361786 GTGGCAAATACCCAGTGGTTAT 58.638 45.455 8.74 0.00 44.75 1.89
2414 2540 3.767131 GTGGCAAATACCCAGTGGTTATT 59.233 43.478 8.74 7.33 44.75 1.40
2415 2541 3.766591 TGGCAAATACCCAGTGGTTATTG 59.233 43.478 12.32 10.38 44.75 1.90
2416 2542 3.132111 GGCAAATACCCAGTGGTTATTGG 59.868 47.826 12.32 10.63 44.75 3.16
2417 2543 3.767131 GCAAATACCCAGTGGTTATTGGT 59.233 43.478 12.32 2.46 44.75 3.67
2418 2544 4.221924 GCAAATACCCAGTGGTTATTGGTT 59.778 41.667 12.32 0.00 44.75 3.67
2419 2545 5.719173 CAAATACCCAGTGGTTATTGGTTG 58.281 41.667 12.32 4.35 44.75 3.77
2420 2546 4.668138 ATACCCAGTGGTTATTGGTTGT 57.332 40.909 8.74 0.00 44.75 3.32
2455 2581 2.970324 GCACGAACCGTTGGCTGA 60.970 61.111 0.00 0.00 38.32 4.26
2481 2607 3.093278 GCTGCGCGCTTATCAAGT 58.907 55.556 33.29 0.00 35.14 3.16
2546 2672 1.637478 GGGACAAATCGCCGCGTTAA 61.637 55.000 13.39 0.00 0.00 2.01
2558 2684 4.191485 CGTTAAGCCGTGCGAGCG 62.191 66.667 0.00 0.00 34.64 5.03
2591 2717 2.858344 CGTGTCTCGCTAAAACCATAGG 59.142 50.000 0.00 0.00 0.00 2.57
2592 2718 3.428452 CGTGTCTCGCTAAAACCATAGGA 60.428 47.826 0.00 0.00 0.00 2.94
2593 2719 4.113354 GTGTCTCGCTAAAACCATAGGAG 58.887 47.826 0.00 0.00 0.00 3.69
2594 2720 3.124560 GTCTCGCTAAAACCATAGGAGC 58.875 50.000 0.00 0.00 0.00 4.70
2595 2721 2.764010 TCTCGCTAAAACCATAGGAGCA 59.236 45.455 0.00 0.00 32.55 4.26
2596 2722 3.126831 CTCGCTAAAACCATAGGAGCAG 58.873 50.000 0.00 0.00 32.55 4.24
2597 2723 2.764010 TCGCTAAAACCATAGGAGCAGA 59.236 45.455 0.00 0.00 32.55 4.26
2598 2724 3.388024 TCGCTAAAACCATAGGAGCAGAT 59.612 43.478 0.00 0.00 32.55 2.90
2599 2725 4.130118 CGCTAAAACCATAGGAGCAGATT 58.870 43.478 0.00 0.00 32.55 2.40
2600 2726 5.069914 TCGCTAAAACCATAGGAGCAGATTA 59.930 40.000 0.00 0.00 32.55 1.75
2601 2727 5.177696 CGCTAAAACCATAGGAGCAGATTAC 59.822 44.000 0.00 0.00 32.55 1.89
2602 2728 6.055588 GCTAAAACCATAGGAGCAGATTACA 58.944 40.000 0.00 0.00 33.26 2.41
2603 2729 6.542370 GCTAAAACCATAGGAGCAGATTACAA 59.458 38.462 0.00 0.00 33.26 2.41
2604 2730 6.759497 AAAACCATAGGAGCAGATTACAAC 57.241 37.500 0.00 0.00 0.00 3.32
2605 2731 5.435686 AACCATAGGAGCAGATTACAACA 57.564 39.130 0.00 0.00 0.00 3.33
2606 2732 5.636903 ACCATAGGAGCAGATTACAACAT 57.363 39.130 0.00 0.00 0.00 2.71
2607 2733 6.747414 ACCATAGGAGCAGATTACAACATA 57.253 37.500 0.00 0.00 0.00 2.29
2608 2734 6.763355 ACCATAGGAGCAGATTACAACATAG 58.237 40.000 0.00 0.00 0.00 2.23
2609 2735 6.554982 ACCATAGGAGCAGATTACAACATAGA 59.445 38.462 0.00 0.00 0.00 1.98
2610 2736 7.236432 ACCATAGGAGCAGATTACAACATAGAT 59.764 37.037 0.00 0.00 0.00 1.98
2611 2737 7.548427 CCATAGGAGCAGATTACAACATAGATG 59.452 40.741 0.00 0.00 0.00 2.90
2612 2738 5.303971 AGGAGCAGATTACAACATAGATGC 58.696 41.667 0.00 0.00 0.00 3.91
2613 2739 5.059161 GGAGCAGATTACAACATAGATGCA 58.941 41.667 0.00 0.00 34.93 3.96
2614 2740 5.704515 GGAGCAGATTACAACATAGATGCAT 59.295 40.000 0.00 0.00 34.93 3.96
2615 2741 6.206243 GGAGCAGATTACAACATAGATGCATT 59.794 38.462 0.00 0.00 34.93 3.56
2616 2742 7.388776 GGAGCAGATTACAACATAGATGCATTA 59.611 37.037 0.00 0.00 34.93 1.90
2617 2743 8.092521 AGCAGATTACAACATAGATGCATTAC 57.907 34.615 0.00 0.00 34.93 1.89
2618 2744 7.716560 AGCAGATTACAACATAGATGCATTACA 59.283 33.333 0.00 0.00 34.93 2.41
2619 2745 8.344831 GCAGATTACAACATAGATGCATTACAA 58.655 33.333 0.00 0.00 32.79 2.41
2620 2746 9.874215 CAGATTACAACATAGATGCATTACAAG 57.126 33.333 0.00 0.00 0.00 3.16
2621 2747 9.836864 AGATTACAACATAGATGCATTACAAGA 57.163 29.630 0.00 0.00 0.00 3.02
2623 2749 6.369059 ACAACATAGATGCATTACAAGAGC 57.631 37.500 0.00 0.00 0.00 4.09
2629 2755 1.742761 TGCATTACAAGAGCCTCAGC 58.257 50.000 0.00 0.00 40.32 4.26
2679 2805 7.362401 CCTCTCCATTTGACATTCTTAAAGTGG 60.362 40.741 0.00 0.00 0.00 4.00
2691 2817 8.262227 ACATTCTTAAAGTGGTCGGATATAACA 58.738 33.333 0.00 0.00 0.00 2.41
2765 2893 6.973474 TCCTTTGTTACACACATTTTAAACGG 59.027 34.615 0.00 0.00 34.43 4.44
2776 2904 4.023021 ACATTTTAAACGGTTGCACGGTAT 60.023 37.500 0.00 0.00 38.39 2.73
2838 3090 5.699097 TGCACATACTTAACCCAAAAGAC 57.301 39.130 0.00 0.00 0.00 3.01
2839 3091 5.133941 TGCACATACTTAACCCAAAAGACA 58.866 37.500 0.00 0.00 0.00 3.41
2840 3092 5.772672 TGCACATACTTAACCCAAAAGACAT 59.227 36.000 0.00 0.00 0.00 3.06
2841 3093 6.266558 TGCACATACTTAACCCAAAAGACATT 59.733 34.615 0.00 0.00 0.00 2.71
2842 3094 7.448777 TGCACATACTTAACCCAAAAGACATTA 59.551 33.333 0.00 0.00 0.00 1.90
2843 3095 8.301002 GCACATACTTAACCCAAAAGACATTAA 58.699 33.333 0.00 0.00 0.00 1.40
2854 3106 9.541884 ACCCAAAAGACATTAAATATACCAAGT 57.458 29.630 0.00 0.00 0.00 3.16
2885 3137 6.817765 AAAAACACCATATGTCCACACTAG 57.182 37.500 1.24 0.00 42.31 2.57
2886 3138 3.543680 ACACCATATGTCCACACTAGC 57.456 47.619 1.24 0.00 36.54 3.42
2887 3139 2.837591 ACACCATATGTCCACACTAGCA 59.162 45.455 1.24 0.00 36.54 3.49
2888 3140 3.198068 CACCATATGTCCACACTAGCAC 58.802 50.000 1.24 0.00 0.00 4.40
2889 3141 3.107601 ACCATATGTCCACACTAGCACT 58.892 45.455 1.24 0.00 0.00 4.40
2890 3142 4.099419 CACCATATGTCCACACTAGCACTA 59.901 45.833 1.24 0.00 0.00 2.74
2891 3143 4.099573 ACCATATGTCCACACTAGCACTAC 59.900 45.833 1.24 0.00 0.00 2.73
2892 3144 4.099419 CCATATGTCCACACTAGCACTACA 59.901 45.833 1.24 0.00 0.00 2.74
2893 3145 3.876274 ATGTCCACACTAGCACTACAG 57.124 47.619 0.00 0.00 0.00 2.74
2894 3146 1.272490 TGTCCACACTAGCACTACAGC 59.728 52.381 0.00 0.00 0.00 4.40
2895 3147 0.895530 TCCACACTAGCACTACAGCC 59.104 55.000 0.00 0.00 34.23 4.85
2896 3148 0.458543 CCACACTAGCACTACAGCCG 60.459 60.000 0.00 0.00 34.23 5.52
2897 3149 0.526211 CACACTAGCACTACAGCCGA 59.474 55.000 0.00 0.00 34.23 5.54
2898 3150 1.067846 CACACTAGCACTACAGCCGAA 60.068 52.381 0.00 0.00 34.23 4.30
2899 3151 1.825474 ACACTAGCACTACAGCCGAAT 59.175 47.619 0.00 0.00 34.23 3.34
2900 3152 2.196749 CACTAGCACTACAGCCGAATG 58.803 52.381 0.00 0.00 34.23 2.67
2901 3153 1.825474 ACTAGCACTACAGCCGAATGT 59.175 47.619 0.00 0.00 37.19 2.71
2902 3154 2.196749 CTAGCACTACAGCCGAATGTG 58.803 52.381 3.09 0.00 34.56 3.21
2903 3155 0.391661 AGCACTACAGCCGAATGTGG 60.392 55.000 3.09 2.81 37.65 4.17
2913 3165 1.601903 GCCGAATGTGGCGATTCATTA 59.398 47.619 9.08 0.00 46.75 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.542462 CGTCCTGTCTTTAATTTCCTTATATCA 57.458 33.333 0.00 0.00 0.00 2.15
19 20 8.496751 GCGTCCTGTCTTTAATTTCCTTATATC 58.503 37.037 0.00 0.00 0.00 1.63
20 21 7.990886 TGCGTCCTGTCTTTAATTTCCTTATAT 59.009 33.333 0.00 0.00 0.00 0.86
21 22 7.279313 GTGCGTCCTGTCTTTAATTTCCTTATA 59.721 37.037 0.00 0.00 0.00 0.98
22 23 6.093633 GTGCGTCCTGTCTTTAATTTCCTTAT 59.906 38.462 0.00 0.00 0.00 1.73
23 24 5.410439 GTGCGTCCTGTCTTTAATTTCCTTA 59.590 40.000 0.00 0.00 0.00 2.69
24 25 4.215613 GTGCGTCCTGTCTTTAATTTCCTT 59.784 41.667 0.00 0.00 0.00 3.36
25 26 3.751698 GTGCGTCCTGTCTTTAATTTCCT 59.248 43.478 0.00 0.00 0.00 3.36
26 27 3.424433 CGTGCGTCCTGTCTTTAATTTCC 60.424 47.826 0.00 0.00 0.00 3.13
27 28 3.185797 ACGTGCGTCCTGTCTTTAATTTC 59.814 43.478 0.00 0.00 0.00 2.17
28 29 3.059188 CACGTGCGTCCTGTCTTTAATTT 60.059 43.478 0.82 0.00 0.00 1.82
29 30 2.478894 CACGTGCGTCCTGTCTTTAATT 59.521 45.455 0.82 0.00 0.00 1.40
30 31 2.066262 CACGTGCGTCCTGTCTTTAAT 58.934 47.619 0.82 0.00 0.00 1.40
31 32 1.493772 CACGTGCGTCCTGTCTTTAA 58.506 50.000 0.82 0.00 0.00 1.52
32 33 0.942410 GCACGTGCGTCCTGTCTTTA 60.942 55.000 26.77 0.00 0.00 1.85
33 34 2.244651 GCACGTGCGTCCTGTCTTT 61.245 57.895 26.77 0.00 0.00 2.52
34 35 2.661866 GCACGTGCGTCCTGTCTT 60.662 61.111 26.77 0.00 0.00 3.01
35 36 2.916502 TTTGCACGTGCGTCCTGTCT 62.917 55.000 33.22 0.00 45.83 3.41
36 37 1.841663 ATTTGCACGTGCGTCCTGTC 61.842 55.000 33.22 7.31 45.83 3.51
37 38 1.444119 AATTTGCACGTGCGTCCTGT 61.444 50.000 33.22 14.84 45.83 4.00
38 39 0.725784 GAATTTGCACGTGCGTCCTG 60.726 55.000 33.22 0.00 45.83 3.86
39 40 0.884704 AGAATTTGCACGTGCGTCCT 60.885 50.000 33.22 21.83 45.83 3.85
40 41 0.793861 TAGAATTTGCACGTGCGTCC 59.206 50.000 33.22 20.12 45.83 4.79
41 42 2.587612 TTAGAATTTGCACGTGCGTC 57.412 45.000 33.22 25.54 45.83 5.19
42 43 3.242936 ACTTTTAGAATTTGCACGTGCGT 60.243 39.130 33.22 20.05 45.83 5.24
43 44 3.117832 CACTTTTAGAATTTGCACGTGCG 59.882 43.478 33.22 17.55 45.83 5.34
44 45 4.041723 ACACTTTTAGAATTTGCACGTGC 58.958 39.130 33.11 33.11 42.50 5.34
45 46 6.183359 GCATACACTTTTAGAATTTGCACGTG 60.183 38.462 12.28 12.28 0.00 4.49
46 47 5.856455 GCATACACTTTTAGAATTTGCACGT 59.144 36.000 0.00 0.00 0.00 4.49
47 48 5.002468 CGCATACACTTTTAGAATTTGCACG 59.998 40.000 0.00 0.00 0.00 5.34
48 49 6.083630 TCGCATACACTTTTAGAATTTGCAC 58.916 36.000 0.00 0.00 0.00 4.57
49 50 6.247727 TCGCATACACTTTTAGAATTTGCA 57.752 33.333 0.00 0.00 0.00 4.08
50 51 6.291269 GCATCGCATACACTTTTAGAATTTGC 60.291 38.462 0.00 0.00 0.00 3.68
51 52 6.746822 TGCATCGCATACACTTTTAGAATTTG 59.253 34.615 0.00 0.00 31.71 2.32
52 53 6.851609 TGCATCGCATACACTTTTAGAATTT 58.148 32.000 0.00 0.00 31.71 1.82
53 54 6.435430 TGCATCGCATACACTTTTAGAATT 57.565 33.333 0.00 0.00 31.71 2.17
54 55 5.008019 CCTGCATCGCATACACTTTTAGAAT 59.992 40.000 0.00 0.00 38.13 2.40
55 56 4.332543 CCTGCATCGCATACACTTTTAGAA 59.667 41.667 0.00 0.00 38.13 2.10
56 57 3.871006 CCTGCATCGCATACACTTTTAGA 59.129 43.478 0.00 0.00 38.13 2.10
57 58 3.546815 GCCTGCATCGCATACACTTTTAG 60.547 47.826 1.21 0.00 38.13 1.85
58 59 2.354510 GCCTGCATCGCATACACTTTTA 59.645 45.455 1.21 0.00 38.13 1.52
59 60 1.133025 GCCTGCATCGCATACACTTTT 59.867 47.619 1.21 0.00 38.13 2.27
60 61 0.734889 GCCTGCATCGCATACACTTT 59.265 50.000 1.21 0.00 38.13 2.66
61 62 0.392863 TGCCTGCATCGCATACACTT 60.393 50.000 4.57 0.00 38.13 3.16
62 63 1.091771 GTGCCTGCATCGCATACACT 61.092 55.000 11.36 0.00 39.50 3.55
63 64 1.091771 AGTGCCTGCATCGCATACAC 61.092 55.000 11.36 11.47 41.43 2.90
64 65 1.091197 CAGTGCCTGCATCGCATACA 61.091 55.000 11.36 0.00 38.13 2.29
65 66 1.091771 ACAGTGCCTGCATCGCATAC 61.092 55.000 11.36 1.02 38.13 2.39
66 67 0.463620 TACAGTGCCTGCATCGCATA 59.536 50.000 11.36 0.00 38.13 3.14
67 68 0.812811 CTACAGTGCCTGCATCGCAT 60.813 55.000 11.36 0.00 38.13 4.73
68 69 1.448365 CTACAGTGCCTGCATCGCA 60.448 57.895 4.57 4.57 34.37 5.10
69 70 2.817423 GCTACAGTGCCTGCATCGC 61.817 63.158 0.00 0.00 34.37 4.58
70 71 1.020861 TTGCTACAGTGCCTGCATCG 61.021 55.000 6.20 0.00 34.37 3.84
71 72 1.135575 GTTTGCTACAGTGCCTGCATC 60.136 52.381 6.20 0.00 34.37 3.91
72 73 0.883833 GTTTGCTACAGTGCCTGCAT 59.116 50.000 6.20 0.00 34.37 3.96
73 74 1.506309 CGTTTGCTACAGTGCCTGCA 61.506 55.000 2.50 1.85 34.37 4.41
74 75 1.207593 CGTTTGCTACAGTGCCTGC 59.792 57.895 2.50 0.00 34.37 4.85
75 76 1.868997 CCGTTTGCTACAGTGCCTG 59.131 57.895 0.00 1.16 37.52 4.85
76 77 1.966451 GCCGTTTGCTACAGTGCCT 60.966 57.895 0.00 0.00 36.87 4.75
77 78 1.791103 TTGCCGTTTGCTACAGTGCC 61.791 55.000 0.00 0.00 42.00 5.01
78 79 0.660300 GTTGCCGTTTGCTACAGTGC 60.660 55.000 0.00 0.00 43.93 4.40
79 80 0.040425 GGTTGCCGTTTGCTACAGTG 60.040 55.000 1.62 0.00 45.92 3.66
80 81 0.464735 TGGTTGCCGTTTGCTACAGT 60.465 50.000 1.62 0.00 45.92 3.55
81 82 0.665835 TTGGTTGCCGTTTGCTACAG 59.334 50.000 1.62 0.00 45.92 2.74
82 83 1.103803 TTTGGTTGCCGTTTGCTACA 58.896 45.000 1.62 0.00 45.92 2.74
83 84 1.202313 TGTTTGGTTGCCGTTTGCTAC 60.202 47.619 0.00 0.00 43.79 3.58
84 85 1.103803 TGTTTGGTTGCCGTTTGCTA 58.896 45.000 0.00 0.00 42.00 3.49
85 86 0.459411 GTGTTTGGTTGCCGTTTGCT 60.459 50.000 0.00 0.00 42.00 3.91
86 87 1.747686 CGTGTTTGGTTGCCGTTTGC 61.748 55.000 0.00 0.00 41.77 3.68
87 88 0.456995 ACGTGTTTGGTTGCCGTTTG 60.457 50.000 0.00 0.00 0.00 2.93
88 89 0.179158 GACGTGTTTGGTTGCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
89 90 1.027792 AGACGTGTTTGGTTGCCGTT 61.028 50.000 0.00 0.00 0.00 4.44
90 91 1.027792 AAGACGTGTTTGGTTGCCGT 61.028 50.000 0.00 0.00 0.00 5.68
91 92 0.099791 AAAGACGTGTTTGGTTGCCG 59.900 50.000 10.22 0.00 0.00 5.69
92 93 2.287393 AAAAGACGTGTTTGGTTGCC 57.713 45.000 11.84 0.00 0.00 4.52
93 94 4.023739 ACTAAAAGACGTGTTTGGTTGC 57.976 40.909 11.84 0.00 0.00 4.17
94 95 5.064962 TGGTACTAAAAGACGTGTTTGGTTG 59.935 40.000 11.84 5.18 32.65 3.77
95 96 5.065090 GTGGTACTAAAAGACGTGTTTGGTT 59.935 40.000 11.84 0.00 32.65 3.67
96 97 4.571984 GTGGTACTAAAAGACGTGTTTGGT 59.428 41.667 11.84 14.90 34.51 3.67
97 98 4.571580 TGTGGTACTAAAAGACGTGTTTGG 59.428 41.667 11.84 10.11 0.00 3.28
98 99 5.721876 TGTGGTACTAAAAGACGTGTTTG 57.278 39.130 11.84 2.76 0.00 2.93
99 100 7.383300 GTCTATGTGGTACTAAAAGACGTGTTT 59.617 37.037 4.61 4.61 0.00 2.83
100 101 6.865205 GTCTATGTGGTACTAAAAGACGTGTT 59.135 38.462 0.00 0.00 0.00 3.32
101 102 6.385033 GTCTATGTGGTACTAAAAGACGTGT 58.615 40.000 0.00 0.00 0.00 4.49
102 103 5.803967 GGTCTATGTGGTACTAAAAGACGTG 59.196 44.000 0.00 0.00 34.17 4.49
103 104 5.392380 CGGTCTATGTGGTACTAAAAGACGT 60.392 44.000 0.00 0.00 34.17 4.34
104 105 5.032863 CGGTCTATGTGGTACTAAAAGACG 58.967 45.833 9.36 0.00 34.17 4.18
105 106 6.199937 TCGGTCTATGTGGTACTAAAAGAC 57.800 41.667 7.81 7.81 32.92 3.01
106 107 7.414222 AATCGGTCTATGTGGTACTAAAAGA 57.586 36.000 0.00 0.00 0.00 2.52
111 112 9.797642 TCTTTATAATCGGTCTATGTGGTACTA 57.202 33.333 0.00 0.00 0.00 1.82
112 113 8.574737 GTCTTTATAATCGGTCTATGTGGTACT 58.425 37.037 0.00 0.00 0.00 2.73
113 114 8.355169 TGTCTTTATAATCGGTCTATGTGGTAC 58.645 37.037 0.00 0.00 0.00 3.34
114 115 8.467963 TGTCTTTATAATCGGTCTATGTGGTA 57.532 34.615 0.00 0.00 0.00 3.25
115 116 7.356089 TGTCTTTATAATCGGTCTATGTGGT 57.644 36.000 0.00 0.00 0.00 4.16
116 117 6.868864 CCTGTCTTTATAATCGGTCTATGTGG 59.131 42.308 0.00 0.00 0.00 4.17
117 118 7.595502 GTCCTGTCTTTATAATCGGTCTATGTG 59.404 40.741 0.00 0.00 0.00 3.21
118 119 7.287005 TGTCCTGTCTTTATAATCGGTCTATGT 59.713 37.037 0.00 0.00 0.00 2.29
119 120 7.595502 GTGTCCTGTCTTTATAATCGGTCTATG 59.404 40.741 0.00 0.00 0.00 2.23
120 121 7.287005 TGTGTCCTGTCTTTATAATCGGTCTAT 59.713 37.037 0.00 0.00 0.00 1.98
121 122 6.604396 TGTGTCCTGTCTTTATAATCGGTCTA 59.396 38.462 0.00 0.00 0.00 2.59
122 123 5.421056 TGTGTCCTGTCTTTATAATCGGTCT 59.579 40.000 0.00 0.00 0.00 3.85
123 124 5.519206 GTGTGTCCTGTCTTTATAATCGGTC 59.481 44.000 0.00 0.00 0.00 4.79
124 125 5.416947 GTGTGTCCTGTCTTTATAATCGGT 58.583 41.667 0.00 0.00 0.00 4.69
125 126 4.503007 CGTGTGTCCTGTCTTTATAATCGG 59.497 45.833 0.00 0.00 0.00 4.18
126 127 5.004440 CACGTGTGTCCTGTCTTTATAATCG 59.996 44.000 7.58 0.00 0.00 3.34
127 128 5.220416 GCACGTGTGTCCTGTCTTTATAATC 60.220 44.000 18.38 0.00 0.00 1.75
128 129 4.630069 GCACGTGTGTCCTGTCTTTATAAT 59.370 41.667 18.38 0.00 0.00 1.28
129 130 3.991773 GCACGTGTGTCCTGTCTTTATAA 59.008 43.478 18.38 0.00 0.00 0.98
130 131 3.006003 TGCACGTGTGTCCTGTCTTTATA 59.994 43.478 18.38 0.00 0.00 0.98
131 132 2.224185 TGCACGTGTGTCCTGTCTTTAT 60.224 45.455 18.38 0.00 0.00 1.40
132 133 1.137282 TGCACGTGTGTCCTGTCTTTA 59.863 47.619 18.38 0.00 0.00 1.85
133 134 0.107897 TGCACGTGTGTCCTGTCTTT 60.108 50.000 18.38 0.00 0.00 2.52
134 135 0.107897 TTGCACGTGTGTCCTGTCTT 60.108 50.000 18.38 0.00 0.00 3.01
135 136 0.107897 TTTGCACGTGTGTCCTGTCT 60.108 50.000 18.38 0.00 0.00 3.41
136 137 0.944386 ATTTGCACGTGTGTCCTGTC 59.056 50.000 18.38 0.00 0.00 3.51
137 138 1.388547 AATTTGCACGTGTGTCCTGT 58.611 45.000 18.38 0.00 0.00 4.00
138 139 2.490328 AAATTTGCACGTGTGTCCTG 57.510 45.000 18.38 0.00 0.00 3.86
139 140 5.950758 TTATAAATTTGCACGTGTGTCCT 57.049 34.783 18.38 0.54 0.00 3.85
140 141 8.742188 CATATTTATAAATTTGCACGTGTGTCC 58.258 33.333 18.38 0.09 0.00 4.02
141 142 9.284594 ACATATTTATAAATTTGCACGTGTGTC 57.715 29.630 21.51 0.49 32.71 3.67
142 143 9.071221 CACATATTTATAAATTTGCACGTGTGT 57.929 29.630 21.51 4.47 32.71 3.72
143 144 9.283420 TCACATATTTATAAATTTGCACGTGTG 57.717 29.630 21.51 18.47 32.71 3.82
144 145 9.284594 GTCACATATTTATAAATTTGCACGTGT 57.715 29.630 21.51 11.26 32.71 4.49
145 146 8.460629 CGTCACATATTTATAAATTTGCACGTG 58.539 33.333 25.69 12.28 35.16 4.49
146 147 7.642194 CCGTCACATATTTATAAATTTGCACGT 59.358 33.333 28.19 13.40 36.44 4.49
147 148 7.853437 TCCGTCACATATTTATAAATTTGCACG 59.147 33.333 26.31 26.31 37.07 5.34
148 149 9.677567 ATCCGTCACATATTTATAAATTTGCAC 57.322 29.630 21.51 17.81 32.71 4.57
149 150 9.676195 CATCCGTCACATATTTATAAATTTGCA 57.324 29.630 21.51 10.77 32.71 4.08
150 151 9.891828 TCATCCGTCACATATTTATAAATTTGC 57.108 29.630 21.51 9.96 32.71 3.68
165 166 5.411361 CAGTCCTAAATTTTCATCCGTCACA 59.589 40.000 0.00 0.00 0.00 3.58
166 167 5.642063 TCAGTCCTAAATTTTCATCCGTCAC 59.358 40.000 0.00 0.00 0.00 3.67
204 205 5.731957 AATATTAAAGGGCGGTGTGTTTT 57.268 34.783 0.00 0.00 0.00 2.43
313 330 8.413309 TTTGGATGACTCAAATTCTCAATCTT 57.587 30.769 0.00 0.00 0.00 2.40
405 422 3.770040 GCCCGGCCCCAATTTGAC 61.770 66.667 0.00 0.00 0.00 3.18
415 432 0.249573 CATCAAATTGATGCCCGGCC 60.250 55.000 21.16 0.00 46.37 6.13
442 469 7.144722 TGTTTATGTTTGACACTGATGATCC 57.855 36.000 0.00 0.00 0.00 3.36
451 478 9.308318 ACTTTAAACCATGTTTATGTTTGACAC 57.692 29.630 7.13 0.00 32.21 3.67
461 488 9.615295 GCTTTTATCGACTTTAAACCATGTTTA 57.385 29.630 0.00 0.00 0.00 2.01
486 513 4.829064 TGTATGGCGGAATATTGAAAGC 57.171 40.909 0.00 0.00 0.00 3.51
490 517 5.559770 ACATGATGTATGGCGGAATATTGA 58.440 37.500 0.00 0.00 41.25 2.57
494 521 7.809546 TTTAAACATGATGTATGGCGGAATA 57.190 32.000 0.00 0.00 41.25 1.75
510 537 5.405269 GCACAGCTCCGAAATTTTTAAACAT 59.595 36.000 0.00 0.00 0.00 2.71
528 560 3.624326 TTGAGTATTGTTGTGCACAGC 57.376 42.857 25.01 25.01 36.48 4.40
538 570 6.201044 CGGATAGCTTTCGAATTGAGTATTGT 59.799 38.462 0.00 0.00 0.00 2.71
801 834 1.135257 TGTCAACAAAAACGCTGGGTG 60.135 47.619 0.00 0.00 0.00 4.61
898 935 4.570874 GAGGGGGCAGGCGAATCC 62.571 72.222 0.00 0.00 0.00 3.01
956 994 0.749454 GGTGGGAATGCTGCGATCTT 60.749 55.000 0.00 0.00 0.00 2.40
1019 1057 0.469917 GGATTGATTCGAGAGGGCCA 59.530 55.000 6.18 0.00 0.00 5.36
1022 1060 1.765314 AGGTGGATTGATTCGAGAGGG 59.235 52.381 0.00 0.00 0.00 4.30
1034 1072 0.032615 AGGAGCTCGAGAGGTGGATT 60.033 55.000 18.75 0.00 39.57 3.01
1058 1096 2.548875 CTCGCTTGAGATTTGGAGGAG 58.451 52.381 0.00 0.00 42.66 3.69
1059 1097 1.406069 GCTCGCTTGAGATTTGGAGGA 60.406 52.381 0.00 0.00 42.66 3.71
1060 1098 1.012841 GCTCGCTTGAGATTTGGAGG 58.987 55.000 0.00 0.00 42.66 4.30
1061 1099 1.396301 GTGCTCGCTTGAGATTTGGAG 59.604 52.381 0.00 0.00 42.66 3.86
1062 1100 1.270785 TGTGCTCGCTTGAGATTTGGA 60.271 47.619 0.00 0.00 42.66 3.53
1063 1101 1.135859 GTGTGCTCGCTTGAGATTTGG 60.136 52.381 0.00 0.00 42.66 3.28
1064 1102 1.135859 GGTGTGCTCGCTTGAGATTTG 60.136 52.381 0.00 0.00 42.66 2.32
1098 1137 1.864711 TCTGAAACCGAAACTGAAGCG 59.135 47.619 0.00 0.00 0.00 4.68
1132 1171 3.138798 GGGCAGGCATGTCAGCTG 61.139 66.667 14.69 7.63 30.39 4.24
1136 1175 4.783621 GCGAGGGCAGGCATGTCA 62.784 66.667 4.93 0.00 39.62 3.58
1262 1301 1.722034 AGGTTCAGAAGCTCACCTCA 58.278 50.000 9.18 0.00 34.27 3.86
1317 1373 0.846015 ATCCAATCAGCCCCAATCGA 59.154 50.000 0.00 0.00 0.00 3.59
1338 1394 4.204799 TCATCTGCCAAGATCCAATTCAG 58.795 43.478 0.00 0.00 41.43 3.02
1617 1702 1.376037 CTTCTCGGCCGCCTTCTTT 60.376 57.895 23.51 0.00 0.00 2.52
1655 1749 3.604667 CCTTGCGCTTGGTGCCAA 61.605 61.111 9.73 3.43 38.39 4.52
1960 2073 7.750229 AAACTGCAGATTCATTTCAGAGTTA 57.250 32.000 23.35 0.00 0.00 2.24
1962 2075 6.489361 AGAAAACTGCAGATTCATTTCAGAGT 59.511 34.615 26.90 5.22 31.06 3.24
1963 2076 6.910995 AGAAAACTGCAGATTCATTTCAGAG 58.089 36.000 26.90 0.12 31.06 3.35
1964 2077 6.889301 AGAAAACTGCAGATTCATTTCAGA 57.111 33.333 26.90 0.00 31.06 3.27
1965 2078 7.114529 GTGAAGAAAACTGCAGATTCATTTCAG 59.885 37.037 26.90 0.68 31.06 3.02
1985 2099 4.462483 GGGAAATTGCTTGTATGGTGAAGA 59.538 41.667 0.00 0.00 0.00 2.87
2024 2147 3.165071 TGATCACAAGGAGCAGACAGTA 58.835 45.455 0.00 0.00 36.91 2.74
2033 2156 1.363744 GAACGGCTGATCACAAGGAG 58.636 55.000 0.00 0.00 0.00 3.69
2034 2157 0.036388 GGAACGGCTGATCACAAGGA 60.036 55.000 0.00 0.00 0.00 3.36
2046 2169 2.640316 AATAGGGATTGAGGAACGGC 57.360 50.000 0.00 0.00 0.00 5.68
2047 2170 4.102681 AGGTAAATAGGGATTGAGGAACGG 59.897 45.833 0.00 0.00 0.00 4.44
2048 2171 5.291905 AGGTAAATAGGGATTGAGGAACG 57.708 43.478 0.00 0.00 0.00 3.95
2052 2175 3.646637 ACCGAGGTAAATAGGGATTGAGG 59.353 47.826 0.00 0.00 0.00 3.86
2054 2177 5.703730 AAACCGAGGTAAATAGGGATTGA 57.296 39.130 0.00 0.00 0.00 2.57
2069 2192 4.092968 GGCACAGACAGTAATAAAACCGAG 59.907 45.833 0.00 0.00 0.00 4.63
2072 2195 5.240844 ACAAGGCACAGACAGTAATAAAACC 59.759 40.000 0.00 0.00 0.00 3.27
2082 2205 2.174363 TGATCACAAGGCACAGACAG 57.826 50.000 0.00 0.00 0.00 3.51
2083 2206 2.865119 ATGATCACAAGGCACAGACA 57.135 45.000 0.00 0.00 0.00 3.41
2087 2210 2.076100 GACGAATGATCACAAGGCACA 58.924 47.619 0.00 0.00 0.00 4.57
2088 2211 2.350522 AGACGAATGATCACAAGGCAC 58.649 47.619 0.00 0.00 0.00 5.01
2091 2214 5.808042 ATTGAAGACGAATGATCACAAGG 57.192 39.130 0.00 0.00 0.00 3.61
2092 2215 7.300320 TCAAATTGAAGACGAATGATCACAAG 58.700 34.615 0.00 0.00 0.00 3.16
2093 2216 7.200778 TCAAATTGAAGACGAATGATCACAA 57.799 32.000 0.00 0.00 0.00 3.33
2094 2217 6.799926 TCAAATTGAAGACGAATGATCACA 57.200 33.333 0.00 0.00 0.00 3.58
2095 2218 9.941664 AATATCAAATTGAAGACGAATGATCAC 57.058 29.630 0.00 0.00 0.00 3.06
2099 2222 9.992910 CTCAAATATCAAATTGAAGACGAATGA 57.007 29.630 0.00 0.00 35.31 2.57
2100 2223 9.992910 TCTCAAATATCAAATTGAAGACGAATG 57.007 29.630 0.00 0.00 35.31 2.67
2119 2242 1.945394 CAGGCAGCGCTATTCTCAAAT 59.055 47.619 10.99 0.00 0.00 2.32
2174 2297 4.199310 TGAAAGGTACATAAGCAGATGCC 58.801 43.478 0.14 0.00 43.38 4.40
2194 2317 8.282592 CGAACAGAGATCACAATTTAAAACTGA 58.717 33.333 0.00 2.47 0.00 3.41
2209 2332 0.103208 ACGGATGGCGAACAGAGATC 59.897 55.000 0.00 0.00 0.00 2.75
2240 2364 5.708544 TGCCTGATGAATTGGGATAAGAAT 58.291 37.500 0.00 0.00 0.00 2.40
2262 2386 4.755123 AGTGAAAGAAACAACGATACCCTG 59.245 41.667 0.00 0.00 0.00 4.45
2278 2402 3.813166 TCGGTTTCTAAGGCAAGTGAAAG 59.187 43.478 0.00 0.00 0.00 2.62
2298 2422 0.866061 CTCCCGATTACGTGTGCTCG 60.866 60.000 0.00 0.96 37.88 5.03
2413 2539 1.453015 AGCCACTCGCAACAACCAA 60.453 52.632 0.00 0.00 41.38 3.67
2414 2540 2.186160 CAGCCACTCGCAACAACCA 61.186 57.895 0.00 0.00 41.38 3.67
2415 2541 1.237285 ATCAGCCACTCGCAACAACC 61.237 55.000 0.00 0.00 41.38 3.77
2416 2542 0.110056 CATCAGCCACTCGCAACAAC 60.110 55.000 0.00 0.00 41.38 3.32
2417 2543 1.855213 GCATCAGCCACTCGCAACAA 61.855 55.000 0.00 0.00 41.38 2.83
2418 2544 2.327343 GCATCAGCCACTCGCAACA 61.327 57.895 0.00 0.00 41.38 3.33
2419 2545 2.482374 GCATCAGCCACTCGCAAC 59.518 61.111 0.00 0.00 41.38 4.17
2474 2600 1.134818 AGTCGCCGATGCAACTTGATA 60.135 47.619 0.00 0.00 27.62 2.15
2481 2607 2.016393 CTCCCTAGTCGCCGATGCAA 62.016 60.000 0.00 0.00 37.32 4.08
2558 2684 3.649986 GACACGCTGCCACACACC 61.650 66.667 0.00 0.00 0.00 4.16
2582 2708 5.815581 TGTTGTAATCTGCTCCTATGGTTT 58.184 37.500 0.00 0.00 0.00 3.27
2583 2709 5.435686 TGTTGTAATCTGCTCCTATGGTT 57.564 39.130 0.00 0.00 0.00 3.67
2584 2710 5.636903 ATGTTGTAATCTGCTCCTATGGT 57.363 39.130 0.00 0.00 0.00 3.55
2585 2711 6.997655 TCTATGTTGTAATCTGCTCCTATGG 58.002 40.000 0.00 0.00 0.00 2.74
2586 2712 7.064371 GCATCTATGTTGTAATCTGCTCCTATG 59.936 40.741 0.00 0.00 0.00 2.23
2587 2713 7.102346 GCATCTATGTTGTAATCTGCTCCTAT 58.898 38.462 0.00 0.00 0.00 2.57
2588 2714 6.041979 TGCATCTATGTTGTAATCTGCTCCTA 59.958 38.462 0.00 0.00 0.00 2.94
2589 2715 5.163269 TGCATCTATGTTGTAATCTGCTCCT 60.163 40.000 0.00 0.00 0.00 3.69
2590 2716 5.059161 TGCATCTATGTTGTAATCTGCTCC 58.941 41.667 0.00 0.00 0.00 4.70
2591 2717 6.798315 ATGCATCTATGTTGTAATCTGCTC 57.202 37.500 0.00 0.00 0.00 4.26
2592 2718 7.716560 TGTAATGCATCTATGTTGTAATCTGCT 59.283 33.333 0.00 0.00 0.00 4.24
2593 2719 7.864686 TGTAATGCATCTATGTTGTAATCTGC 58.135 34.615 0.00 0.00 0.00 4.26
2594 2720 9.874215 CTTGTAATGCATCTATGTTGTAATCTG 57.126 33.333 0.00 0.00 0.00 2.90
2595 2721 9.836864 TCTTGTAATGCATCTATGTTGTAATCT 57.163 29.630 0.00 0.00 0.00 2.40
2597 2723 8.562892 GCTCTTGTAATGCATCTATGTTGTAAT 58.437 33.333 0.00 0.00 0.00 1.89
2598 2724 7.012327 GGCTCTTGTAATGCATCTATGTTGTAA 59.988 37.037 0.00 0.00 0.00 2.41
2599 2725 6.483307 GGCTCTTGTAATGCATCTATGTTGTA 59.517 38.462 0.00 0.00 0.00 2.41
2600 2726 5.297776 GGCTCTTGTAATGCATCTATGTTGT 59.702 40.000 0.00 0.00 0.00 3.32
2601 2727 5.530171 AGGCTCTTGTAATGCATCTATGTTG 59.470 40.000 0.00 0.00 0.00 3.33
2602 2728 5.688807 AGGCTCTTGTAATGCATCTATGTT 58.311 37.500 0.00 0.00 0.00 2.71
2603 2729 5.163269 TGAGGCTCTTGTAATGCATCTATGT 60.163 40.000 16.72 0.00 38.19 2.29
2604 2730 5.303165 TGAGGCTCTTGTAATGCATCTATG 58.697 41.667 16.72 0.00 38.19 2.23
2605 2731 5.549347 CTGAGGCTCTTGTAATGCATCTAT 58.451 41.667 16.72 0.00 38.19 1.98
2606 2732 4.741837 GCTGAGGCTCTTGTAATGCATCTA 60.742 45.833 16.72 0.00 38.19 1.98
2607 2733 3.806380 CTGAGGCTCTTGTAATGCATCT 58.194 45.455 16.72 0.00 38.19 2.90
2608 2734 2.290093 GCTGAGGCTCTTGTAATGCATC 59.710 50.000 16.72 0.00 37.91 3.91
2609 2735 2.295885 GCTGAGGCTCTTGTAATGCAT 58.704 47.619 16.72 0.00 35.22 3.96
2610 2736 1.742761 GCTGAGGCTCTTGTAATGCA 58.257 50.000 16.72 0.00 35.22 3.96
2633 2759 9.232473 GGAGAGGTTTATGAAATTTACTCAGTT 57.768 33.333 0.00 0.00 0.00 3.16
2647 2773 7.636150 AGAATGTCAAATGGAGAGGTTTATG 57.364 36.000 0.00 0.00 0.00 1.90
2679 2805 2.970640 AGGGGGTTCTGTTATATCCGAC 59.029 50.000 0.00 0.00 0.00 4.79
2765 2893 3.376859 TGATGGATGAAATACCGTGCAAC 59.623 43.478 0.00 0.00 0.00 4.17
2810 3062 9.651913 CTTTTGGGTTAAGTATGTGCATATTTT 57.348 29.630 0.00 0.00 0.00 1.82
2862 3114 5.183140 GCTAGTGTGGACATATGGTGTTTTT 59.817 40.000 7.80 0.00 42.36 1.94
2863 3115 4.700213 GCTAGTGTGGACATATGGTGTTTT 59.300 41.667 7.80 0.00 42.36 2.43
2864 3116 4.261801 GCTAGTGTGGACATATGGTGTTT 58.738 43.478 7.80 0.00 42.36 2.83
2865 3117 3.263170 TGCTAGTGTGGACATATGGTGTT 59.737 43.478 7.80 0.00 42.36 3.32
2866 3118 2.837591 TGCTAGTGTGGACATATGGTGT 59.162 45.455 7.80 0.00 45.83 4.16
2867 3119 3.118629 AGTGCTAGTGTGGACATATGGTG 60.119 47.826 7.80 0.00 0.00 4.17
2868 3120 3.107601 AGTGCTAGTGTGGACATATGGT 58.892 45.455 7.80 0.00 0.00 3.55
2869 3121 3.827008 AGTGCTAGTGTGGACATATGG 57.173 47.619 7.80 0.00 0.00 2.74
2870 3122 5.262588 TGTAGTGCTAGTGTGGACATATG 57.737 43.478 0.00 0.00 0.00 1.78
2871 3123 4.202161 GCTGTAGTGCTAGTGTGGACATAT 60.202 45.833 0.00 0.00 0.00 1.78
2872 3124 3.130516 GCTGTAGTGCTAGTGTGGACATA 59.869 47.826 0.00 0.00 0.00 2.29
2873 3125 2.093973 GCTGTAGTGCTAGTGTGGACAT 60.094 50.000 0.00 0.00 0.00 3.06
2874 3126 1.272490 GCTGTAGTGCTAGTGTGGACA 59.728 52.381 0.00 0.00 0.00 4.02
2875 3127 1.404315 GGCTGTAGTGCTAGTGTGGAC 60.404 57.143 0.00 0.00 0.00 4.02
2876 3128 0.895530 GGCTGTAGTGCTAGTGTGGA 59.104 55.000 0.00 0.00 0.00 4.02
2877 3129 0.458543 CGGCTGTAGTGCTAGTGTGG 60.459 60.000 0.00 0.00 0.00 4.17
2878 3130 0.526211 TCGGCTGTAGTGCTAGTGTG 59.474 55.000 0.00 0.00 0.00 3.82
2879 3131 1.254026 TTCGGCTGTAGTGCTAGTGT 58.746 50.000 0.00 0.00 0.00 3.55
2880 3132 2.196749 CATTCGGCTGTAGTGCTAGTG 58.803 52.381 0.00 0.00 0.00 2.74
2881 3133 1.825474 ACATTCGGCTGTAGTGCTAGT 59.175 47.619 0.00 0.00 0.00 2.57
2882 3134 2.196749 CACATTCGGCTGTAGTGCTAG 58.803 52.381 0.00 0.00 0.00 3.42
2883 3135 1.134818 CCACATTCGGCTGTAGTGCTA 60.135 52.381 8.56 0.00 0.00 3.49
2884 3136 0.391661 CCACATTCGGCTGTAGTGCT 60.392 55.000 8.56 0.00 0.00 4.40
2885 3137 2.089854 CCACATTCGGCTGTAGTGC 58.910 57.895 8.56 0.00 0.00 4.40
2894 3146 3.961477 TTAATGAATCGCCACATTCGG 57.039 42.857 0.00 0.00 37.75 4.30
2895 3147 5.970612 TCAATTTAATGAATCGCCACATTCG 59.029 36.000 0.00 0.00 37.75 3.34
2896 3148 7.166473 GTCTCAATTTAATGAATCGCCACATTC 59.834 37.037 0.00 0.00 37.75 2.67
2897 3149 6.974622 GTCTCAATTTAATGAATCGCCACATT 59.025 34.615 0.00 0.00 39.53 2.71
2898 3150 6.095300 TGTCTCAATTTAATGAATCGCCACAT 59.905 34.615 0.00 0.00 0.00 3.21
2899 3151 5.414144 TGTCTCAATTTAATGAATCGCCACA 59.586 36.000 0.00 0.00 0.00 4.17
2900 3152 5.879237 TGTCTCAATTTAATGAATCGCCAC 58.121 37.500 0.00 0.00 0.00 5.01
2901 3153 6.507958 TTGTCTCAATTTAATGAATCGCCA 57.492 33.333 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.