Multiple sequence alignment - TraesCS2D01G393900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G393900 | chr2D | 100.000 | 3518 | 0 | 0 | 1 | 3518 | 503585675 | 503582158 | 0.000000e+00 | 6497.0 |
1 | TraesCS2D01G393900 | chr2A | 93.419 | 2188 | 100 | 20 | 876 | 3027 | 649621448 | 649619269 | 0.000000e+00 | 3203.0 |
2 | TraesCS2D01G393900 | chr2A | 89.790 | 666 | 49 | 10 | 192 | 852 | 649622179 | 649621528 | 0.000000e+00 | 835.0 |
3 | TraesCS2D01G393900 | chr2A | 93.548 | 62 | 4 | 0 | 3075 | 3136 | 649619132 | 649619071 | 3.740000e-15 | 93.5 |
4 | TraesCS2D01G393900 | chr2B | 93.843 | 2160 | 72 | 18 | 876 | 3027 | 592530776 | 592528670 | 0.000000e+00 | 3195.0 |
5 | TraesCS2D01G393900 | chr2B | 91.269 | 733 | 45 | 10 | 124 | 852 | 592531566 | 592530849 | 0.000000e+00 | 981.0 |
6 | TraesCS2D01G393900 | chr2B | 90.071 | 282 | 26 | 2 | 3209 | 3489 | 521506929 | 521506649 | 7.180000e-97 | 364.0 |
7 | TraesCS2D01G393900 | chr2B | 86.517 | 89 | 6 | 4 | 3053 | 3135 | 592528566 | 592528478 | 3.740000e-15 | 93.5 |
8 | TraesCS2D01G393900 | chr2B | 93.878 | 49 | 3 | 0 | 3006 | 3054 | 592528656 | 592528608 | 1.350000e-09 | 75.0 |
9 | TraesCS2D01G393900 | chr3D | 96.262 | 321 | 10 | 2 | 3199 | 3518 | 260971048 | 260971367 | 3.110000e-145 | 525.0 |
10 | TraesCS2D01G393900 | chr4D | 95.652 | 322 | 10 | 4 | 3199 | 3518 | 459257774 | 459257455 | 6.730000e-142 | 514.0 |
11 | TraesCS2D01G393900 | chr4D | 88.382 | 241 | 23 | 4 | 1656 | 1894 | 480815045 | 480814808 | 5.750000e-73 | 285.0 |
12 | TraesCS2D01G393900 | chr4D | 88.889 | 117 | 13 | 0 | 1273 | 1389 | 480815446 | 480815330 | 1.020000e-30 | 145.0 |
13 | TraesCS2D01G393900 | chr7B | 94.681 | 282 | 14 | 1 | 3209 | 3489 | 334801234 | 334800953 | 1.500000e-118 | 436.0 |
14 | TraesCS2D01G393900 | chr7B | 92.883 | 281 | 19 | 1 | 3209 | 3489 | 313776007 | 313775728 | 1.180000e-109 | 407.0 |
15 | TraesCS2D01G393900 | chr7B | 92.527 | 281 | 21 | 0 | 3209 | 3489 | 407202855 | 407202575 | 1.520000e-108 | 403.0 |
16 | TraesCS2D01G393900 | chr1B | 91.065 | 291 | 23 | 3 | 3201 | 3489 | 608351723 | 608351434 | 1.180000e-104 | 390.0 |
17 | TraesCS2D01G393900 | chr4A | 91.459 | 281 | 24 | 0 | 3209 | 3489 | 650310497 | 650310217 | 1.530000e-103 | 387.0 |
18 | TraesCS2D01G393900 | chr6B | 90.426 | 282 | 26 | 1 | 3209 | 3489 | 481266686 | 481266405 | 1.540000e-98 | 370.0 |
19 | TraesCS2D01G393900 | chr4B | 88.841 | 233 | 22 | 3 | 1664 | 1894 | 608624696 | 608624466 | 2.070000e-72 | 283.0 |
20 | TraesCS2D01G393900 | chr4B | 92.857 | 140 | 8 | 2 | 555 | 693 | 335599576 | 335599438 | 5.950000e-48 | 202.0 |
21 | TraesCS2D01G393900 | chr4B | 89.130 | 138 | 15 | 0 | 1994 | 2131 | 608624249 | 608624112 | 4.670000e-39 | 172.0 |
22 | TraesCS2D01G393900 | chr5A | 90.000 | 210 | 21 | 0 | 1664 | 1873 | 662752327 | 662752536 | 4.470000e-69 | 272.0 |
23 | TraesCS2D01G393900 | chr7A | 81.884 | 138 | 22 | 3 | 9 | 144 | 244449515 | 244449651 | 2.870000e-21 | 113.0 |
24 | TraesCS2D01G393900 | chr1D | 80.328 | 122 | 22 | 2 | 24 | 144 | 50991534 | 50991654 | 1.340000e-14 | 91.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G393900 | chr2D | 503582158 | 503585675 | 3517 | True | 6497.000000 | 6497 | 100.000000 | 1 | 3518 | 1 | chr2D.!!$R1 | 3517 |
1 | TraesCS2D01G393900 | chr2A | 649619071 | 649622179 | 3108 | True | 1377.166667 | 3203 | 92.252333 | 192 | 3136 | 3 | chr2A.!!$R1 | 2944 |
2 | TraesCS2D01G393900 | chr2B | 592528478 | 592531566 | 3088 | True | 1086.125000 | 3195 | 91.376750 | 124 | 3135 | 4 | chr2B.!!$R2 | 3011 |
3 | TraesCS2D01G393900 | chr4D | 480814808 | 480815446 | 638 | True | 215.000000 | 285 | 88.635500 | 1273 | 1894 | 2 | chr4D.!!$R2 | 621 |
4 | TraesCS2D01G393900 | chr4B | 608624112 | 608624696 | 584 | True | 227.500000 | 283 | 88.985500 | 1664 | 2131 | 2 | chr4B.!!$R2 | 467 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
65 | 66 | 0.041312 | CGGCAAGGTCTTTCGTTGTG | 60.041 | 55.0 | 0.0 | 0.0 | 41.97 | 3.33 | F |
1930 | 2117 | 0.038159 | CCGAACCACAGTGTCTCTCC | 60.038 | 60.0 | 0.0 | 0.0 | 0.00 | 3.71 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1942 | 2129 | 1.105759 | GGATGGTTCTGGCTGATGGC | 61.106 | 60.0 | 0.0 | 0.00 | 40.9 | 4.40 | R |
3317 | 3695 | 0.032267 | GGCATACGTCTAGAGGCACC | 59.968 | 60.0 | 12.3 | 5.31 | 0.0 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 4.452733 | GTAGCGGCGGCAAGGTCT | 62.453 | 66.667 | 19.21 | 0.00 | 43.41 | 3.85 |
57 | 58 | 3.702048 | TAGCGGCGGCAAGGTCTT | 61.702 | 61.111 | 19.21 | 0.00 | 43.41 | 3.01 |
58 | 59 | 3.248446 | TAGCGGCGGCAAGGTCTTT | 62.248 | 57.895 | 19.21 | 0.00 | 43.41 | 2.52 |
59 | 60 | 4.103103 | GCGGCGGCAAGGTCTTTC | 62.103 | 66.667 | 9.78 | 0.00 | 39.62 | 2.62 |
60 | 61 | 3.788766 | CGGCGGCAAGGTCTTTCG | 61.789 | 66.667 | 10.53 | 0.00 | 0.00 | 3.46 |
61 | 62 | 2.668550 | GGCGGCAAGGTCTTTCGT | 60.669 | 61.111 | 3.07 | 0.00 | 0.00 | 3.85 |
62 | 63 | 2.258726 | GGCGGCAAGGTCTTTCGTT | 61.259 | 57.895 | 3.07 | 0.00 | 0.00 | 3.85 |
63 | 64 | 1.082104 | GCGGCAAGGTCTTTCGTTG | 60.082 | 57.895 | 0.00 | 0.00 | 42.58 | 4.10 |
64 | 65 | 1.782028 | GCGGCAAGGTCTTTCGTTGT | 61.782 | 55.000 | 0.00 | 0.00 | 41.97 | 3.32 |
65 | 66 | 0.041312 | CGGCAAGGTCTTTCGTTGTG | 60.041 | 55.000 | 0.00 | 0.00 | 41.97 | 3.33 |
66 | 67 | 0.310854 | GGCAAGGTCTTTCGTTGTGG | 59.689 | 55.000 | 0.00 | 0.00 | 41.97 | 4.17 |
67 | 68 | 0.310854 | GCAAGGTCTTTCGTTGTGGG | 59.689 | 55.000 | 0.00 | 0.00 | 41.97 | 4.61 |
68 | 69 | 0.951558 | CAAGGTCTTTCGTTGTGGGG | 59.048 | 55.000 | 0.00 | 0.00 | 37.21 | 4.96 |
69 | 70 | 0.549469 | AAGGTCTTTCGTTGTGGGGT | 59.451 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
70 | 71 | 0.179029 | AGGTCTTTCGTTGTGGGGTG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
71 | 72 | 1.170290 | GGTCTTTCGTTGTGGGGTGG | 61.170 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
72 | 73 | 1.149627 | TCTTTCGTTGTGGGGTGGG | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 4.61 |
73 | 74 | 1.901464 | CTTTCGTTGTGGGGTGGGG | 60.901 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
74 | 75 | 3.438615 | TTTCGTTGTGGGGTGGGGG | 62.439 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
96 | 97 | 3.508840 | CGGCGGTGGGCTTTGATC | 61.509 | 66.667 | 0.00 | 0.00 | 42.94 | 2.92 |
97 | 98 | 3.140814 | GGCGGTGGGCTTTGATCC | 61.141 | 66.667 | 0.00 | 0.00 | 42.94 | 3.36 |
98 | 99 | 3.140814 | GCGGTGGGCTTTGATCCC | 61.141 | 66.667 | 0.00 | 0.00 | 44.17 | 3.85 |
99 | 100 | 2.440247 | CGGTGGGCTTTGATCCCC | 60.440 | 66.667 | 0.00 | 0.00 | 43.24 | 4.81 |
100 | 101 | 2.042944 | GGTGGGCTTTGATCCCCC | 60.043 | 66.667 | 2.63 | 2.26 | 43.24 | 5.40 |
101 | 102 | 2.626467 | GGTGGGCTTTGATCCCCCT | 61.626 | 63.158 | 2.63 | 0.00 | 43.24 | 4.79 |
102 | 103 | 1.380380 | GTGGGCTTTGATCCCCCTG | 60.380 | 63.158 | 2.63 | 0.00 | 43.24 | 4.45 |
103 | 104 | 2.280079 | GGGCTTTGATCCCCCTGG | 59.720 | 66.667 | 0.00 | 0.00 | 37.81 | 4.45 |
104 | 105 | 2.442830 | GGCTTTGATCCCCCTGGC | 60.443 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
105 | 106 | 2.830370 | GCTTTGATCCCCCTGGCG | 60.830 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
106 | 107 | 2.677228 | CTTTGATCCCCCTGGCGT | 59.323 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
107 | 108 | 1.452108 | CTTTGATCCCCCTGGCGTC | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
108 | 109 | 3.323758 | TTTGATCCCCCTGGCGTCG | 62.324 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
162 | 163 | 6.101005 | TGAGGGGTCAATTTTCCAAAAGAAAT | 59.899 | 34.615 | 0.00 | 0.00 | 43.93 | 2.17 |
167 | 168 | 8.291740 | GGGTCAATTTTCCAAAAGAAATGATTG | 58.708 | 33.333 | 6.36 | 6.36 | 43.93 | 2.67 |
247 | 248 | 1.295357 | CGGGTTACATTCACGCAGCA | 61.295 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
256 | 257 | 2.730066 | TTCACGCAGCAGCAGCCTTA | 62.730 | 55.000 | 3.88 | 0.00 | 43.56 | 2.69 |
301 | 305 | 2.509336 | CGACGGGGATGTGTGCTC | 60.509 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
313 | 317 | 5.451798 | GGGATGTGTGCTCAAAAGAAAAGAA | 60.452 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
314 | 318 | 5.689068 | GGATGTGTGCTCAAAAGAAAAGAAG | 59.311 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
315 | 319 | 5.895636 | TGTGTGCTCAAAAGAAAAGAAGA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 2.87 |
316 | 320 | 6.266168 | TGTGTGCTCAAAAGAAAAGAAGAA | 57.734 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
317 | 321 | 6.324819 | TGTGTGCTCAAAAGAAAAGAAGAAG | 58.675 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
318 | 322 | 6.150976 | TGTGTGCTCAAAAGAAAAGAAGAAGA | 59.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
319 | 323 | 7.029563 | GTGTGCTCAAAAGAAAAGAAGAAGAA | 58.970 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
320 | 324 | 7.219726 | GTGTGCTCAAAAGAAAAGAAGAAGAAG | 59.780 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
356 | 362 | 2.138320 | GGATACATCACATGCGGTCAG | 58.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
359 | 365 | 1.896220 | ACATCACATGCGGTCAGTTT | 58.104 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
361 | 367 | 1.078709 | ATCACATGCGGTCAGTTTCG | 58.921 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
373 | 379 | 4.944249 | GTTTCGCAAACTCCTGCC | 57.056 | 55.556 | 5.00 | 0.00 | 39.26 | 4.85 |
374 | 380 | 1.082104 | GTTTCGCAAACTCCTGCCG | 60.082 | 57.895 | 5.00 | 0.00 | 39.26 | 5.69 |
388 | 394 | 4.162690 | GCCGTCCTGCGATTCCCT | 62.163 | 66.667 | 0.00 | 0.00 | 44.77 | 4.20 |
389 | 395 | 2.202932 | CCGTCCTGCGATTCCCTG | 60.203 | 66.667 | 0.00 | 0.00 | 44.77 | 4.45 |
453 | 459 | 2.809299 | GCAAAAGAGTTACGTGGAGGGT | 60.809 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
474 | 480 | 0.890683 | CTCCATCAAACAACAGCCCC | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
579 | 586 | 0.229500 | GCGCGCTTTTGAGTTTTTGG | 59.771 | 50.000 | 26.67 | 0.00 | 0.00 | 3.28 |
695 | 704 | 2.359230 | AAGCAAGGCAGGAGCGTC | 60.359 | 61.111 | 0.00 | 0.00 | 43.41 | 5.19 |
701 | 710 | 2.125350 | GGCAGGAGCGTCTTCTGG | 60.125 | 66.667 | 14.47 | 0.86 | 37.56 | 3.86 |
764 | 773 | 4.966965 | AGTAGTTCGAACGATCTGACAT | 57.033 | 40.909 | 21.87 | 4.50 | 0.00 | 3.06 |
797 | 806 | 2.355956 | GGATCGAATCGGACGGCC | 60.356 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
840 | 849 | 4.530946 | ACTTCGATTTCCCTACTTCTTCCA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
843 | 852 | 3.197983 | CGATTTCCCTACTTCTTCCACCT | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
844 | 853 | 4.680975 | CGATTTCCCTACTTCTTCCACCTC | 60.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
860 | 901 | 0.726827 | CCTCATTTGCACACGCGTAT | 59.273 | 50.000 | 13.44 | 0.00 | 42.97 | 3.06 |
867 | 908 | 1.225637 | GCACACGCGTATGAAACCG | 60.226 | 57.895 | 23.78 | 4.32 | 0.00 | 4.44 |
876 | 917 | 2.416972 | GCGTATGAAACCGAACCTCTCT | 60.417 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
877 | 918 | 3.846360 | CGTATGAAACCGAACCTCTCTT | 58.154 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
881 | 943 | 3.728845 | TGAAACCGAACCTCTCTTCTTG | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
912 | 978 | 0.041833 | CACCTCTCTCCTCTTCCCCA | 59.958 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
950 | 1016 | 2.368875 | CCGTCCCTGTCCATTTATAGCT | 59.631 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
985 | 1051 | 2.955881 | GCGCCCAAGGGAGTGTACT | 61.956 | 63.158 | 9.92 | 0.00 | 37.40 | 2.73 |
1017 | 1083 | 3.474570 | ATGGCGGCTGGTCTCTCC | 61.475 | 66.667 | 11.43 | 0.00 | 0.00 | 3.71 |
1026 | 1092 | 2.363147 | GGTCTCTCCGGCTCCACT | 60.363 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1389 | 1455 | 2.703798 | CGCCTGGCAAATGGAGGTG | 61.704 | 63.158 | 20.29 | 0.00 | 0.00 | 4.00 |
1404 | 1501 | 1.376683 | GGTGCGTACCAGCCATTCA | 60.377 | 57.895 | 18.66 | 0.00 | 46.71 | 2.57 |
1471 | 1568 | 2.102161 | GCCATTTTAGTGCGCGGG | 59.898 | 61.111 | 8.83 | 0.00 | 0.00 | 6.13 |
1490 | 1587 | 1.528309 | CGGTTGGGCTTGACTGGTT | 60.528 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1496 | 1593 | 2.617274 | GGCTTGACTGGTTGCCGTC | 61.617 | 63.158 | 0.00 | 0.00 | 35.79 | 4.79 |
1930 | 2117 | 0.038159 | CCGAACCACAGTGTCTCTCC | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1933 | 2120 | 0.469331 | AACCACAGTGTCTCTCCGGA | 60.469 | 55.000 | 2.93 | 2.93 | 0.00 | 5.14 |
1987 | 2245 | 0.450583 | GATCTGACTCGCCACGTGTA | 59.549 | 55.000 | 15.65 | 0.00 | 33.78 | 2.90 |
2194 | 2459 | 2.627699 | GCCAACTTGGTGATTTCCTGAA | 59.372 | 45.455 | 9.63 | 0.00 | 40.46 | 3.02 |
2372 | 2650 | 1.526917 | ACTGGCCAAGTGACACAGC | 60.527 | 57.895 | 7.01 | 7.50 | 37.88 | 4.40 |
2472 | 2750 | 2.029964 | GTTGGTGGCCTCGACGAA | 59.970 | 61.111 | 3.32 | 0.00 | 0.00 | 3.85 |
2594 | 2872 | 8.481314 | TCTAGCAGATGAACTACATTTCAAGAT | 58.519 | 33.333 | 0.00 | 0.00 | 38.95 | 2.40 |
2725 | 3007 | 4.715130 | TACTCGGCTGCAGGGGGT | 62.715 | 66.667 | 17.12 | 5.48 | 0.00 | 4.95 |
2824 | 3111 | 3.125573 | TCTCTCTCACCGCGTCCG | 61.126 | 66.667 | 4.92 | 0.00 | 0.00 | 4.79 |
2913 | 3200 | 8.053026 | TCTGTGTATAACAAGTAGAGAAGGTC | 57.947 | 38.462 | 0.00 | 0.00 | 38.67 | 3.85 |
2972 | 3259 | 4.617808 | CAAGAATGCTGGAGATTCAGTG | 57.382 | 45.455 | 0.00 | 0.00 | 37.12 | 3.66 |
3000 | 3287 | 3.498481 | CCATGTTTCCTCCTTTCTCCACA | 60.498 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
3036 | 3358 | 6.710295 | TCACACTATTGTTGTTGCTACTCATT | 59.290 | 34.615 | 0.00 | 0.00 | 31.66 | 2.57 |
3038 | 3360 | 6.486657 | ACACTATTGTTGTTGCTACTCATTGT | 59.513 | 34.615 | 0.00 | 0.00 | 28.43 | 2.71 |
3065 | 3431 | 6.260936 | TCTCTTCCAACTCTGTTGATTTTGAC | 59.739 | 38.462 | 11.47 | 0.00 | 0.00 | 3.18 |
3068 | 3434 | 4.272504 | TCCAACTCTGTTGATTTTGACGAC | 59.727 | 41.667 | 11.47 | 0.00 | 0.00 | 4.34 |
3071 | 3437 | 5.156804 | ACTCTGTTGATTTTGACGACAAC | 57.843 | 39.130 | 0.00 | 0.00 | 41.64 | 3.32 |
3118 | 3496 | 1.759299 | AGCCCATTCGCCATTGCAT | 60.759 | 52.632 | 0.00 | 0.00 | 37.32 | 3.96 |
3127 | 3505 | 3.316071 | TCGCCATTGCATTCACAATTT | 57.684 | 38.095 | 0.00 | 0.00 | 38.19 | 1.82 |
3132 | 3510 | 7.038048 | TCGCCATTGCATTCACAATTTATAAA | 58.962 | 30.769 | 0.00 | 0.00 | 38.19 | 1.40 |
3136 | 3514 | 8.933807 | CCATTGCATTCACAATTTATAAACACA | 58.066 | 29.630 | 0.00 | 0.00 | 38.19 | 3.72 |
3139 | 3517 | 9.702494 | TTGCATTCACAATTTATAAACACATCA | 57.298 | 25.926 | 0.00 | 0.00 | 0.00 | 3.07 |
3140 | 3518 | 9.702494 | TGCATTCACAATTTATAAACACATCAA | 57.298 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
3145 | 3523 | 9.853555 | TCACAATTTATAAACACATCAATGGTC | 57.146 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
3146 | 3524 | 8.797215 | CACAATTTATAAACACATCAATGGTCG | 58.203 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
3147 | 3525 | 7.973388 | ACAATTTATAAACACATCAATGGTCGG | 59.027 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
3148 | 3526 | 7.639113 | ATTTATAAACACATCAATGGTCGGT | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3149 | 3527 | 6.671614 | TTATAAACACATCAATGGTCGGTC | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
3150 | 3528 | 2.559698 | AACACATCAATGGTCGGTCA | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3151 | 3529 | 2.099141 | ACACATCAATGGTCGGTCAG | 57.901 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3152 | 3530 | 1.339055 | ACACATCAATGGTCGGTCAGG | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3153 | 3531 | 0.392998 | ACATCAATGGTCGGTCAGGC | 60.393 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3159 | 3537 | 2.990479 | GGTCGGTCAGGCCTTCAT | 59.010 | 61.111 | 0.00 | 0.00 | 42.70 | 2.57 |
3160 | 3538 | 2.208527 | GGTCGGTCAGGCCTTCATA | 58.791 | 57.895 | 0.00 | 0.00 | 42.70 | 2.15 |
3161 | 3539 | 0.539986 | GGTCGGTCAGGCCTTCATAA | 59.460 | 55.000 | 0.00 | 0.00 | 42.70 | 1.90 |
3162 | 3540 | 1.141053 | GGTCGGTCAGGCCTTCATAAT | 59.859 | 52.381 | 0.00 | 0.00 | 42.70 | 1.28 |
3163 | 3541 | 2.421529 | GGTCGGTCAGGCCTTCATAATT | 60.422 | 50.000 | 0.00 | 0.00 | 42.70 | 1.40 |
3164 | 3542 | 3.181458 | GGTCGGTCAGGCCTTCATAATTA | 60.181 | 47.826 | 0.00 | 0.00 | 42.70 | 1.40 |
3165 | 3543 | 4.448210 | GTCGGTCAGGCCTTCATAATTAA | 58.552 | 43.478 | 0.00 | 0.00 | 34.25 | 1.40 |
3166 | 3544 | 4.511826 | GTCGGTCAGGCCTTCATAATTAAG | 59.488 | 45.833 | 0.00 | 0.00 | 34.25 | 1.85 |
3167 | 3545 | 3.815401 | CGGTCAGGCCTTCATAATTAAGG | 59.185 | 47.826 | 0.00 | 1.64 | 45.36 | 2.69 |
3168 | 3546 | 4.145052 | GGTCAGGCCTTCATAATTAAGGG | 58.855 | 47.826 | 0.00 | 0.00 | 43.21 | 3.95 |
3169 | 3547 | 4.141251 | GGTCAGGCCTTCATAATTAAGGGA | 60.141 | 45.833 | 0.00 | 0.00 | 43.21 | 4.20 |
3170 | 3548 | 5.458215 | GGTCAGGCCTTCATAATTAAGGGAT | 60.458 | 44.000 | 0.00 | 0.00 | 43.21 | 3.85 |
3171 | 3549 | 6.240176 | GGTCAGGCCTTCATAATTAAGGGATA | 60.240 | 42.308 | 0.00 | 0.00 | 43.21 | 2.59 |
3172 | 3550 | 7.231467 | GTCAGGCCTTCATAATTAAGGGATAA | 58.769 | 38.462 | 0.00 | 0.00 | 43.21 | 1.75 |
3173 | 3551 | 7.890655 | GTCAGGCCTTCATAATTAAGGGATAAT | 59.109 | 37.037 | 0.00 | 0.00 | 43.21 | 1.28 |
3174 | 3552 | 8.456124 | TCAGGCCTTCATAATTAAGGGATAATT | 58.544 | 33.333 | 0.00 | 0.00 | 44.48 | 1.40 |
3175 | 3553 | 9.753674 | CAGGCCTTCATAATTAAGGGATAATTA | 57.246 | 33.333 | 0.00 | 3.83 | 45.73 | 1.40 |
3227 | 3605 | 6.990908 | AAAGGAGTTAACTACACTACAGGT | 57.009 | 37.500 | 20.07 | 0.00 | 0.00 | 4.00 |
3236 | 3614 | 2.596776 | CACTACAGGTGCCCTAGCT | 58.403 | 57.895 | 0.00 | 0.00 | 39.22 | 3.32 |
3237 | 3615 | 0.905357 | CACTACAGGTGCCCTAGCTT | 59.095 | 55.000 | 0.00 | 0.00 | 39.22 | 3.74 |
3238 | 3616 | 2.108168 | CACTACAGGTGCCCTAGCTTA | 58.892 | 52.381 | 0.00 | 0.00 | 39.22 | 3.09 |
3239 | 3617 | 2.700897 | CACTACAGGTGCCCTAGCTTAT | 59.299 | 50.000 | 0.00 | 0.00 | 39.22 | 1.73 |
3240 | 3618 | 2.966516 | ACTACAGGTGCCCTAGCTTATC | 59.033 | 50.000 | 0.00 | 0.00 | 40.80 | 1.75 |
3241 | 3619 | 1.132500 | ACAGGTGCCCTAGCTTATCC | 58.868 | 55.000 | 0.00 | 0.00 | 40.80 | 2.59 |
3242 | 3620 | 0.034059 | CAGGTGCCCTAGCTTATCCG | 59.966 | 60.000 | 0.00 | 0.00 | 40.80 | 4.18 |
3243 | 3621 | 1.122019 | AGGTGCCCTAGCTTATCCGG | 61.122 | 60.000 | 0.00 | 0.00 | 40.80 | 5.14 |
3244 | 3622 | 1.408453 | GGTGCCCTAGCTTATCCGGT | 61.408 | 60.000 | 0.00 | 0.00 | 40.80 | 5.28 |
3245 | 3623 | 0.249911 | GTGCCCTAGCTTATCCGGTG | 60.250 | 60.000 | 0.00 | 0.00 | 40.80 | 4.94 |
3246 | 3624 | 1.301795 | GCCCTAGCTTATCCGGTGC | 60.302 | 63.158 | 0.00 | 2.15 | 35.50 | 5.01 |
3247 | 3625 | 1.006102 | CCCTAGCTTATCCGGTGCG | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
3257 | 3635 | 3.353836 | CCGGTGCGGTCAGTTTGG | 61.354 | 66.667 | 0.00 | 0.00 | 42.73 | 3.28 |
3258 | 3636 | 2.590575 | CGGTGCGGTCAGTTTGGT | 60.591 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
3259 | 3637 | 2.892334 | CGGTGCGGTCAGTTTGGTG | 61.892 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
3260 | 3638 | 2.331451 | GTGCGGTCAGTTTGGTGC | 59.669 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
3261 | 3639 | 2.904866 | TGCGGTCAGTTTGGTGCC | 60.905 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
3262 | 3640 | 2.594592 | GCGGTCAGTTTGGTGCCT | 60.595 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
3263 | 3641 | 1.302192 | GCGGTCAGTTTGGTGCCTA | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 3.93 |
3264 | 3642 | 0.887387 | GCGGTCAGTTTGGTGCCTAA | 60.887 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3265 | 3643 | 1.600023 | CGGTCAGTTTGGTGCCTAAA | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3266 | 3644 | 1.265905 | CGGTCAGTTTGGTGCCTAAAC | 59.734 | 52.381 | 6.19 | 6.19 | 38.09 | 2.01 |
3267 | 3645 | 2.583143 | GGTCAGTTTGGTGCCTAAACT | 58.417 | 47.619 | 9.73 | 9.73 | 46.23 | 2.66 |
3268 | 3646 | 2.956333 | GGTCAGTTTGGTGCCTAAACTT | 59.044 | 45.455 | 11.95 | 0.00 | 43.71 | 2.66 |
3269 | 3647 | 3.243401 | GGTCAGTTTGGTGCCTAAACTTG | 60.243 | 47.826 | 11.95 | 9.11 | 43.71 | 3.16 |
3270 | 3648 | 3.630312 | GTCAGTTTGGTGCCTAAACTTGA | 59.370 | 43.478 | 11.95 | 10.61 | 43.71 | 3.02 |
3271 | 3649 | 4.097286 | GTCAGTTTGGTGCCTAAACTTGAA | 59.903 | 41.667 | 11.95 | 2.27 | 43.71 | 2.69 |
3272 | 3650 | 4.707448 | TCAGTTTGGTGCCTAAACTTGAAA | 59.293 | 37.500 | 11.95 | 0.48 | 43.71 | 2.69 |
3273 | 3651 | 5.186021 | TCAGTTTGGTGCCTAAACTTGAAAA | 59.814 | 36.000 | 11.95 | 0.00 | 43.71 | 2.29 |
3274 | 3652 | 5.872070 | CAGTTTGGTGCCTAAACTTGAAAAA | 59.128 | 36.000 | 11.95 | 0.00 | 43.71 | 1.94 |
3275 | 3653 | 6.538381 | CAGTTTGGTGCCTAAACTTGAAAAAT | 59.462 | 34.615 | 11.95 | 0.00 | 43.71 | 1.82 |
3276 | 3654 | 7.708752 | CAGTTTGGTGCCTAAACTTGAAAAATA | 59.291 | 33.333 | 11.95 | 0.00 | 43.71 | 1.40 |
3277 | 3655 | 7.709182 | AGTTTGGTGCCTAAACTTGAAAAATAC | 59.291 | 33.333 | 9.73 | 0.00 | 43.71 | 1.89 |
3278 | 3656 | 6.716934 | TGGTGCCTAAACTTGAAAAATACA | 57.283 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3279 | 3657 | 6.508777 | TGGTGCCTAAACTTGAAAAATACAC | 58.491 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3280 | 3658 | 6.096987 | TGGTGCCTAAACTTGAAAAATACACA | 59.903 | 34.615 | 0.00 | 0.00 | 0.00 | 3.72 |
3281 | 3659 | 6.981559 | GGTGCCTAAACTTGAAAAATACACAA | 59.018 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
3282 | 3660 | 7.492994 | GGTGCCTAAACTTGAAAAATACACAAA | 59.507 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3283 | 3661 | 8.874816 | GTGCCTAAACTTGAAAAATACACAAAA | 58.125 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3284 | 3662 | 9.092876 | TGCCTAAACTTGAAAAATACACAAAAG | 57.907 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
3285 | 3663 | 9.093970 | GCCTAAACTTGAAAAATACACAAAAGT | 57.906 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3290 | 3668 | 9.651913 | AACTTGAAAAATACACAAAAGTGATGT | 57.348 | 25.926 | 2.22 | 0.00 | 0.00 | 3.06 |
3291 | 3669 | 9.301153 | ACTTGAAAAATACACAAAAGTGATGTC | 57.699 | 29.630 | 2.22 | 0.00 | 0.00 | 3.06 |
3292 | 3670 | 7.906611 | TGAAAAATACACAAAAGTGATGTCG | 57.093 | 32.000 | 2.22 | 0.00 | 0.00 | 4.35 |
3293 | 3671 | 7.476667 | TGAAAAATACACAAAAGTGATGTCGT | 58.523 | 30.769 | 2.22 | 0.00 | 0.00 | 4.34 |
3294 | 3672 | 8.613482 | TGAAAAATACACAAAAGTGATGTCGTA | 58.387 | 29.630 | 2.22 | 0.00 | 0.00 | 3.43 |
3295 | 3673 | 9.440784 | GAAAAATACACAAAAGTGATGTCGTAA | 57.559 | 29.630 | 2.22 | 0.00 | 0.00 | 3.18 |
3296 | 3674 | 8.776680 | AAAATACACAAAAGTGATGTCGTAAC | 57.223 | 30.769 | 2.22 | 0.00 | 0.00 | 2.50 |
3297 | 3675 | 7.724305 | AATACACAAAAGTGATGTCGTAACT | 57.276 | 32.000 | 2.22 | 0.00 | 0.00 | 2.24 |
3298 | 3676 | 7.724305 | ATACACAAAAGTGATGTCGTAACTT | 57.276 | 32.000 | 2.22 | 0.00 | 35.70 | 2.66 |
3299 | 3677 | 5.806286 | ACACAAAAGTGATGTCGTAACTTG | 58.194 | 37.500 | 2.22 | 0.00 | 34.46 | 3.16 |
3300 | 3678 | 5.353123 | ACACAAAAGTGATGTCGTAACTTGT | 59.647 | 36.000 | 2.22 | 0.00 | 34.46 | 3.16 |
3301 | 3679 | 5.901884 | CACAAAAGTGATGTCGTAACTTGTC | 59.098 | 40.000 | 0.00 | 0.00 | 34.46 | 3.18 |
3302 | 3680 | 5.815740 | ACAAAAGTGATGTCGTAACTTGTCT | 59.184 | 36.000 | 0.00 | 0.00 | 34.46 | 3.41 |
3303 | 3681 | 5.907197 | AAAGTGATGTCGTAACTTGTCTG | 57.093 | 39.130 | 0.00 | 0.00 | 34.46 | 3.51 |
3304 | 3682 | 3.914312 | AGTGATGTCGTAACTTGTCTGG | 58.086 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3305 | 3683 | 2.993899 | GTGATGTCGTAACTTGTCTGGG | 59.006 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
3306 | 3684 | 2.000447 | GATGTCGTAACTTGTCTGGGC | 59.000 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
3307 | 3685 | 0.319211 | TGTCGTAACTTGTCTGGGCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3308 | 3686 | 0.319297 | GTCGTAACTTGTCTGGGCGT | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3309 | 3687 | 0.390124 | TCGTAACTTGTCTGGGCGTT | 59.610 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
3310 | 3688 | 0.788391 | CGTAACTTGTCTGGGCGTTC | 59.212 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3311 | 3689 | 1.870580 | CGTAACTTGTCTGGGCGTTCA | 60.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3312 | 3690 | 2.215196 | GTAACTTGTCTGGGCGTTCAA | 58.785 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3313 | 3691 | 1.757682 | AACTTGTCTGGGCGTTCAAA | 58.242 | 45.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3314 | 3692 | 1.981256 | ACTTGTCTGGGCGTTCAAAT | 58.019 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3315 | 3693 | 3.134574 | ACTTGTCTGGGCGTTCAAATA | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
3316 | 3694 | 2.812011 | ACTTGTCTGGGCGTTCAAATAC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
3317 | 3695 | 1.434555 | TGTCTGGGCGTTCAAATACG | 58.565 | 50.000 | 0.00 | 0.00 | 44.09 | 3.06 |
3318 | 3696 | 0.725117 | GTCTGGGCGTTCAAATACGG | 59.275 | 55.000 | 0.00 | 0.00 | 41.65 | 4.02 |
3319 | 3697 | 0.322322 | TCTGGGCGTTCAAATACGGT | 59.678 | 50.000 | 0.00 | 0.00 | 41.65 | 4.83 |
3320 | 3698 | 0.446222 | CTGGGCGTTCAAATACGGTG | 59.554 | 55.000 | 0.00 | 0.00 | 41.65 | 4.94 |
3321 | 3699 | 1.135939 | GGGCGTTCAAATACGGTGC | 59.864 | 57.895 | 0.00 | 0.00 | 41.65 | 5.01 |
3322 | 3700 | 1.135939 | GGCGTTCAAATACGGTGCC | 59.864 | 57.895 | 0.00 | 0.00 | 41.65 | 5.01 |
3323 | 3701 | 1.303091 | GGCGTTCAAATACGGTGCCT | 61.303 | 55.000 | 0.00 | 0.00 | 41.65 | 4.75 |
3324 | 3702 | 0.096454 | GCGTTCAAATACGGTGCCTC | 59.904 | 55.000 | 0.00 | 0.00 | 41.65 | 4.70 |
3325 | 3703 | 1.722011 | CGTTCAAATACGGTGCCTCT | 58.278 | 50.000 | 0.00 | 0.00 | 37.86 | 3.69 |
3326 | 3704 | 2.883574 | CGTTCAAATACGGTGCCTCTA | 58.116 | 47.619 | 0.00 | 0.00 | 37.86 | 2.43 |
3327 | 3705 | 2.858344 | CGTTCAAATACGGTGCCTCTAG | 59.142 | 50.000 | 0.00 | 0.00 | 37.86 | 2.43 |
3328 | 3706 | 3.428452 | CGTTCAAATACGGTGCCTCTAGA | 60.428 | 47.826 | 0.00 | 0.00 | 37.86 | 2.43 |
3329 | 3707 | 3.795623 | TCAAATACGGTGCCTCTAGAC | 57.204 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
3330 | 3708 | 2.098607 | TCAAATACGGTGCCTCTAGACG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3331 | 3709 | 1.760192 | AATACGGTGCCTCTAGACGT | 58.240 | 50.000 | 9.84 | 9.84 | 41.10 | 4.34 |
3332 | 3710 | 2.627515 | ATACGGTGCCTCTAGACGTA | 57.372 | 50.000 | 13.03 | 13.03 | 43.05 | 3.57 |
3333 | 3711 | 2.627515 | TACGGTGCCTCTAGACGTAT | 57.372 | 50.000 | 8.09 | 0.00 | 38.79 | 3.06 |
3334 | 3712 | 1.022735 | ACGGTGCCTCTAGACGTATG | 58.977 | 55.000 | 3.74 | 0.00 | 35.85 | 2.39 |
3335 | 3713 | 0.317938 | CGGTGCCTCTAGACGTATGC | 60.318 | 60.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3336 | 3714 | 0.032267 | GGTGCCTCTAGACGTATGCC | 59.968 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3337 | 3715 | 0.317938 | GTGCCTCTAGACGTATGCCG | 60.318 | 60.000 | 0.00 | 0.00 | 44.03 | 5.69 |
3338 | 3716 | 1.371881 | GCCTCTAGACGTATGCCGC | 60.372 | 63.158 | 0.00 | 0.00 | 41.42 | 6.53 |
3339 | 3717 | 1.286260 | CCTCTAGACGTATGCCGCC | 59.714 | 63.158 | 0.00 | 0.00 | 41.42 | 6.13 |
3340 | 3718 | 1.082038 | CTCTAGACGTATGCCGCCG | 60.082 | 63.158 | 0.00 | 0.00 | 41.42 | 6.46 |
3341 | 3719 | 1.783031 | CTCTAGACGTATGCCGCCGT | 61.783 | 60.000 | 0.00 | 0.00 | 41.42 | 5.68 |
3342 | 3720 | 0.532640 | TCTAGACGTATGCCGCCGTA | 60.533 | 55.000 | 0.00 | 0.00 | 41.42 | 4.02 |
3343 | 3721 | 0.520404 | CTAGACGTATGCCGCCGTAT | 59.480 | 55.000 | 0.00 | 0.00 | 41.42 | 3.06 |
3344 | 3722 | 0.518636 | TAGACGTATGCCGCCGTATC | 59.481 | 55.000 | 0.00 | 0.00 | 41.42 | 2.24 |
3345 | 3723 | 2.050714 | ACGTATGCCGCCGTATCG | 60.051 | 61.111 | 0.00 | 0.00 | 41.42 | 2.92 |
3346 | 3724 | 2.253154 | CGTATGCCGCCGTATCGA | 59.747 | 61.111 | 0.00 | 0.00 | 0.00 | 3.59 |
3347 | 3725 | 1.796355 | CGTATGCCGCCGTATCGAG | 60.796 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
3348 | 3726 | 1.285023 | GTATGCCGCCGTATCGAGT | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
3349 | 3727 | 1.002250 | GTATGCCGCCGTATCGAGTG | 61.002 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3350 | 3728 | 2.742710 | TATGCCGCCGTATCGAGTGC | 62.743 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3352 | 3730 | 4.944372 | CCGCCGTATCGAGTGCCC | 62.944 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
3356 | 3734 | 4.547905 | CGTATCGAGTGCCCGCGT | 62.548 | 66.667 | 4.92 | 0.00 | 35.24 | 6.01 |
3357 | 3735 | 2.954868 | GTATCGAGTGCCCGCGTG | 60.955 | 66.667 | 4.92 | 0.00 | 35.24 | 5.34 |
3358 | 3736 | 4.201679 | TATCGAGTGCCCGCGTGG | 62.202 | 66.667 | 8.42 | 8.42 | 35.24 | 4.94 |
3368 | 3746 | 3.499737 | CCGCGTGGCATTCCAGTC | 61.500 | 66.667 | 0.00 | 0.00 | 44.48 | 3.51 |
3369 | 3747 | 2.434884 | CGCGTGGCATTCCAGTCT | 60.435 | 61.111 | 0.00 | 0.00 | 44.48 | 3.24 |
3370 | 3748 | 2.743752 | CGCGTGGCATTCCAGTCTG | 61.744 | 63.158 | 0.00 | 0.00 | 44.48 | 3.51 |
3371 | 3749 | 1.672356 | GCGTGGCATTCCAGTCTGT | 60.672 | 57.895 | 0.00 | 0.00 | 44.48 | 3.41 |
3372 | 3750 | 1.639298 | GCGTGGCATTCCAGTCTGTC | 61.639 | 60.000 | 0.00 | 0.00 | 44.48 | 3.51 |
3373 | 3751 | 1.354337 | CGTGGCATTCCAGTCTGTCG | 61.354 | 60.000 | 0.00 | 0.00 | 44.48 | 4.35 |
3374 | 3752 | 1.375908 | TGGCATTCCAGTCTGTCGC | 60.376 | 57.895 | 0.00 | 0.00 | 37.47 | 5.19 |
3375 | 3753 | 1.078848 | GGCATTCCAGTCTGTCGCT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
3376 | 3754 | 0.175760 | GGCATTCCAGTCTGTCGCTA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3377 | 3755 | 1.565305 | GCATTCCAGTCTGTCGCTAG | 58.435 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
3378 | 3756 | 1.804372 | GCATTCCAGTCTGTCGCTAGG | 60.804 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
3379 | 3757 | 0.461961 | ATTCCAGTCTGTCGCTAGGC | 59.538 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3380 | 3758 | 1.605058 | TTCCAGTCTGTCGCTAGGCC | 61.605 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
3381 | 3759 | 2.351244 | CCAGTCTGTCGCTAGGCCA | 61.351 | 63.158 | 5.01 | 0.00 | 0.00 | 5.36 |
3382 | 3760 | 1.153745 | CAGTCTGTCGCTAGGCCAC | 60.154 | 63.158 | 5.01 | 0.00 | 0.00 | 5.01 |
3383 | 3761 | 1.606601 | AGTCTGTCGCTAGGCCACA | 60.607 | 57.895 | 5.01 | 0.00 | 0.00 | 4.17 |
3384 | 3762 | 0.972983 | AGTCTGTCGCTAGGCCACAT | 60.973 | 55.000 | 5.01 | 0.00 | 0.00 | 3.21 |
3385 | 3763 | 0.807667 | GTCTGTCGCTAGGCCACATG | 60.808 | 60.000 | 5.01 | 0.00 | 0.00 | 3.21 |
3386 | 3764 | 1.219124 | CTGTCGCTAGGCCACATGT | 59.781 | 57.895 | 5.01 | 0.00 | 0.00 | 3.21 |
3387 | 3765 | 0.807667 | CTGTCGCTAGGCCACATGTC | 60.808 | 60.000 | 5.01 | 0.00 | 0.00 | 3.06 |
3388 | 3766 | 1.218047 | GTCGCTAGGCCACATGTCA | 59.782 | 57.895 | 5.01 | 0.00 | 0.00 | 3.58 |
3389 | 3767 | 0.807667 | GTCGCTAGGCCACATGTCAG | 60.808 | 60.000 | 5.01 | 0.00 | 0.00 | 3.51 |
3390 | 3768 | 2.176273 | CGCTAGGCCACATGTCAGC | 61.176 | 63.158 | 5.01 | 8.58 | 0.00 | 4.26 |
3391 | 3769 | 2.176273 | GCTAGGCCACATGTCAGCG | 61.176 | 63.158 | 5.01 | 0.30 | 0.00 | 5.18 |
3392 | 3770 | 1.522355 | CTAGGCCACATGTCAGCGG | 60.522 | 63.158 | 5.01 | 3.73 | 0.00 | 5.52 |
3393 | 3771 | 2.244117 | CTAGGCCACATGTCAGCGGT | 62.244 | 60.000 | 5.01 | 4.34 | 0.00 | 5.68 |
3394 | 3772 | 1.836999 | TAGGCCACATGTCAGCGGTT | 61.837 | 55.000 | 5.01 | 3.19 | 0.00 | 4.44 |
3395 | 3773 | 2.562912 | GCCACATGTCAGCGGTTG | 59.437 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
3396 | 3774 | 2.562912 | CCACATGTCAGCGGTTGC | 59.437 | 61.111 | 0.00 | 0.00 | 43.24 | 4.17 |
3397 | 3775 | 2.562912 | CACATGTCAGCGGTTGCC | 59.437 | 61.111 | 0.00 | 0.00 | 44.31 | 4.52 |
3398 | 3776 | 1.968017 | CACATGTCAGCGGTTGCCT | 60.968 | 57.895 | 0.00 | 0.00 | 44.31 | 4.75 |
3399 | 3777 | 0.673333 | CACATGTCAGCGGTTGCCTA | 60.673 | 55.000 | 0.00 | 0.00 | 44.31 | 3.93 |
3400 | 3778 | 0.673644 | ACATGTCAGCGGTTGCCTAC | 60.674 | 55.000 | 0.00 | 0.00 | 44.31 | 3.18 |
3401 | 3779 | 1.447838 | ATGTCAGCGGTTGCCTACG | 60.448 | 57.895 | 0.00 | 0.00 | 44.31 | 3.51 |
3408 | 3786 | 4.439472 | GGTTGCCTACGCGCGTTG | 62.439 | 66.667 | 42.10 | 36.67 | 38.08 | 4.10 |
3409 | 3787 | 3.708734 | GTTGCCTACGCGCGTTGT | 61.709 | 61.111 | 42.10 | 19.68 | 38.08 | 3.32 |
3410 | 3788 | 3.707700 | TTGCCTACGCGCGTTGTG | 61.708 | 61.111 | 42.10 | 29.43 | 38.08 | 3.33 |
3411 | 3789 | 4.649310 | TGCCTACGCGCGTTGTGA | 62.649 | 61.111 | 42.10 | 22.42 | 38.08 | 3.58 |
3412 | 3790 | 3.838795 | GCCTACGCGCGTTGTGAG | 61.839 | 66.667 | 42.10 | 30.14 | 0.00 | 3.51 |
3413 | 3791 | 3.838795 | CCTACGCGCGTTGTGAGC | 61.839 | 66.667 | 42.10 | 0.00 | 40.38 | 4.26 |
3414 | 3792 | 2.805353 | CTACGCGCGTTGTGAGCT | 60.805 | 61.111 | 42.10 | 16.26 | 41.79 | 4.09 |
3415 | 3793 | 1.513373 | CTACGCGCGTTGTGAGCTA | 60.513 | 57.895 | 42.10 | 19.51 | 41.79 | 3.32 |
3416 | 3794 | 0.866061 | CTACGCGCGTTGTGAGCTAT | 60.866 | 55.000 | 42.10 | 14.58 | 41.79 | 2.97 |
3417 | 3795 | 1.137459 | TACGCGCGTTGTGAGCTATG | 61.137 | 55.000 | 42.10 | 4.36 | 41.79 | 2.23 |
3418 | 3796 | 2.021931 | GCGCGTTGTGAGCTATGC | 59.978 | 61.111 | 8.43 | 0.00 | 40.64 | 3.14 |
3419 | 3797 | 2.739704 | GCGCGTTGTGAGCTATGCA | 61.740 | 57.895 | 8.43 | 0.00 | 40.64 | 3.96 |
3420 | 3798 | 2.009108 | CGCGTTGTGAGCTATGCAT | 58.991 | 52.632 | 3.79 | 3.79 | 33.11 | 3.96 |
3421 | 3799 | 0.315625 | CGCGTTGTGAGCTATGCATG | 60.316 | 55.000 | 10.16 | 0.26 | 33.11 | 4.06 |
3422 | 3800 | 0.729116 | GCGTTGTGAGCTATGCATGT | 59.271 | 50.000 | 10.16 | 0.00 | 33.61 | 3.21 |
3423 | 3801 | 1.131126 | GCGTTGTGAGCTATGCATGTT | 59.869 | 47.619 | 10.16 | 0.00 | 33.61 | 2.71 |
3424 | 3802 | 2.777494 | CGTTGTGAGCTATGCATGTTG | 58.223 | 47.619 | 10.16 | 0.43 | 0.00 | 3.33 |
3425 | 3803 | 2.160219 | CGTTGTGAGCTATGCATGTTGT | 59.840 | 45.455 | 10.16 | 0.00 | 0.00 | 3.32 |
3426 | 3804 | 3.365264 | CGTTGTGAGCTATGCATGTTGTT | 60.365 | 43.478 | 10.16 | 0.00 | 0.00 | 2.83 |
3427 | 3805 | 4.549458 | GTTGTGAGCTATGCATGTTGTTT | 58.451 | 39.130 | 10.16 | 0.00 | 0.00 | 2.83 |
3428 | 3806 | 4.852134 | TGTGAGCTATGCATGTTGTTTT | 57.148 | 36.364 | 10.16 | 0.00 | 0.00 | 2.43 |
3429 | 3807 | 5.199024 | TGTGAGCTATGCATGTTGTTTTT | 57.801 | 34.783 | 10.16 | 0.00 | 0.00 | 1.94 |
3453 | 3831 | 3.774842 | AGGAATGCCCCTGGATTTTAA | 57.225 | 42.857 | 0.00 | 0.00 | 34.68 | 1.52 |
3454 | 3832 | 4.285304 | AGGAATGCCCCTGGATTTTAAT | 57.715 | 40.909 | 0.00 | 0.00 | 34.68 | 1.40 |
3455 | 3833 | 4.634411 | AGGAATGCCCCTGGATTTTAATT | 58.366 | 39.130 | 0.00 | 0.00 | 34.68 | 1.40 |
3456 | 3834 | 5.787327 | AGGAATGCCCCTGGATTTTAATTA | 58.213 | 37.500 | 0.00 | 0.00 | 34.68 | 1.40 |
3457 | 3835 | 6.209026 | AGGAATGCCCCTGGATTTTAATTAA | 58.791 | 36.000 | 0.00 | 0.00 | 34.68 | 1.40 |
3458 | 3836 | 6.851300 | AGGAATGCCCCTGGATTTTAATTAAT | 59.149 | 34.615 | 0.00 | 0.00 | 34.68 | 1.40 |
3459 | 3837 | 7.350655 | AGGAATGCCCCTGGATTTTAATTAATT | 59.649 | 33.333 | 5.89 | 5.89 | 34.68 | 1.40 |
3460 | 3838 | 7.998383 | GGAATGCCCCTGGATTTTAATTAATTT | 59.002 | 33.333 | 5.91 | 0.00 | 0.00 | 1.82 |
3461 | 3839 | 9.407380 | GAATGCCCCTGGATTTTAATTAATTTT | 57.593 | 29.630 | 5.91 | 0.00 | 0.00 | 1.82 |
3462 | 3840 | 8.978874 | ATGCCCCTGGATTTTAATTAATTTTC | 57.021 | 30.769 | 5.91 | 0.00 | 0.00 | 2.29 |
3463 | 3841 | 7.044798 | TGCCCCTGGATTTTAATTAATTTTCG | 58.955 | 34.615 | 5.91 | 0.00 | 0.00 | 3.46 |
3464 | 3842 | 6.018262 | GCCCCTGGATTTTAATTAATTTTCGC | 60.018 | 38.462 | 5.91 | 0.00 | 0.00 | 4.70 |
3465 | 3843 | 7.044798 | CCCCTGGATTTTAATTAATTTTCGCA | 58.955 | 34.615 | 5.91 | 0.64 | 0.00 | 5.10 |
3466 | 3844 | 7.550906 | CCCCTGGATTTTAATTAATTTTCGCAA | 59.449 | 33.333 | 5.91 | 0.00 | 0.00 | 4.85 |
3467 | 3845 | 8.940952 | CCCTGGATTTTAATTAATTTTCGCAAA | 58.059 | 29.630 | 5.91 | 0.00 | 0.00 | 3.68 |
3508 | 3886 | 3.339731 | TTTTTGCGGGAGTCAGCG | 58.660 | 55.556 | 5.54 | 0.00 | 35.87 | 5.18 |
3509 | 3887 | 1.525077 | TTTTTGCGGGAGTCAGCGT | 60.525 | 52.632 | 5.54 | 0.00 | 35.87 | 5.07 |
3510 | 3888 | 0.249953 | TTTTTGCGGGAGTCAGCGTA | 60.250 | 50.000 | 5.54 | 0.00 | 35.87 | 4.42 |
3511 | 3889 | 0.947180 | TTTTGCGGGAGTCAGCGTAC | 60.947 | 55.000 | 5.54 | 0.00 | 35.87 | 3.67 |
3512 | 3890 | 2.089887 | TTTGCGGGAGTCAGCGTACA | 62.090 | 55.000 | 5.54 | 0.00 | 35.87 | 2.90 |
3513 | 3891 | 2.202623 | GCGGGAGTCAGCGTACAG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3514 | 3892 | 2.490217 | CGGGAGTCAGCGTACAGG | 59.510 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3515 | 3893 | 2.893398 | GGGAGTCAGCGTACAGGG | 59.107 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3516 | 3894 | 1.681327 | GGGAGTCAGCGTACAGGGA | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
3517 | 3895 | 1.511768 | GGAGTCAGCGTACAGGGAC | 59.488 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
39 | 40 | 3.952628 | AAGACCTTGCCGCCGCTAC | 62.953 | 63.158 | 0.00 | 0.00 | 35.36 | 3.58 |
40 | 41 | 3.248446 | AAAGACCTTGCCGCCGCTA | 62.248 | 57.895 | 0.00 | 0.00 | 35.36 | 4.26 |
41 | 42 | 4.643387 | AAAGACCTTGCCGCCGCT | 62.643 | 61.111 | 0.00 | 0.00 | 35.36 | 5.52 |
42 | 43 | 4.103103 | GAAAGACCTTGCCGCCGC | 62.103 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
43 | 44 | 3.788766 | CGAAAGACCTTGCCGCCG | 61.789 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
44 | 45 | 2.258726 | AACGAAAGACCTTGCCGCC | 61.259 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
45 | 46 | 1.082104 | CAACGAAAGACCTTGCCGC | 60.082 | 57.895 | 0.00 | 0.00 | 0.00 | 6.53 |
46 | 47 | 0.041312 | CACAACGAAAGACCTTGCCG | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
47 | 48 | 0.310854 | CCACAACGAAAGACCTTGCC | 59.689 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
48 | 49 | 0.310854 | CCCACAACGAAAGACCTTGC | 59.689 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
49 | 50 | 0.951558 | CCCCACAACGAAAGACCTTG | 59.048 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
50 | 51 | 0.549469 | ACCCCACAACGAAAGACCTT | 59.451 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
51 | 52 | 0.179029 | CACCCCACAACGAAAGACCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
52 | 53 | 1.170290 | CCACCCCACAACGAAAGACC | 61.170 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
53 | 54 | 1.170290 | CCCACCCCACAACGAAAGAC | 61.170 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
54 | 55 | 1.149627 | CCCACCCCACAACGAAAGA | 59.850 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
55 | 56 | 1.901464 | CCCCACCCCACAACGAAAG | 60.901 | 63.158 | 0.00 | 0.00 | 0.00 | 2.62 |
56 | 57 | 2.196229 | CCCCACCCCACAACGAAA | 59.804 | 61.111 | 0.00 | 0.00 | 0.00 | 3.46 |
57 | 58 | 3.892162 | CCCCCACCCCACAACGAA | 61.892 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
79 | 80 | 3.508840 | GATCAAAGCCCACCGCCG | 61.509 | 66.667 | 0.00 | 0.00 | 38.78 | 6.46 |
80 | 81 | 3.140814 | GGATCAAAGCCCACCGCC | 61.141 | 66.667 | 0.00 | 0.00 | 38.78 | 6.13 |
81 | 82 | 3.140814 | GGGATCAAAGCCCACCGC | 61.141 | 66.667 | 0.00 | 0.00 | 45.31 | 5.68 |
86 | 87 | 2.280079 | CCAGGGGGATCAAAGCCC | 59.720 | 66.667 | 0.00 | 0.00 | 45.25 | 5.19 |
87 | 88 | 2.442830 | GCCAGGGGGATCAAAGCC | 60.443 | 66.667 | 0.00 | 0.00 | 35.59 | 4.35 |
88 | 89 | 2.830370 | CGCCAGGGGGATCAAAGC | 60.830 | 66.667 | 0.00 | 0.00 | 35.59 | 3.51 |
89 | 90 | 1.452108 | GACGCCAGGGGGATCAAAG | 60.452 | 63.158 | 8.67 | 0.00 | 35.59 | 2.77 |
90 | 91 | 2.674754 | GACGCCAGGGGGATCAAA | 59.325 | 61.111 | 8.67 | 0.00 | 35.59 | 2.69 |
91 | 92 | 3.781307 | CGACGCCAGGGGGATCAA | 61.781 | 66.667 | 8.67 | 0.00 | 35.59 | 2.57 |
121 | 122 | 4.394712 | CACGACCCCCTCAGTGCC | 62.395 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
122 | 123 | 3.302347 | CTCACGACCCCCTCAGTGC | 62.302 | 68.421 | 0.00 | 0.00 | 34.84 | 4.40 |
137 | 138 | 4.551671 | TCTTTTGGAAAATTGACCCCTCA | 58.448 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
179 | 180 | 3.107642 | TGACACTCCTCTTTTTCCGTC | 57.892 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
180 | 181 | 3.553828 | TTGACACTCCTCTTTTTCCGT | 57.446 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
181 | 182 | 4.320494 | CCATTTGACACTCCTCTTTTTCCG | 60.320 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
184 | 185 | 3.321968 | GCCCATTTGACACTCCTCTTTTT | 59.678 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
234 | 235 | 2.974489 | GCTGCTGCTGCGTGAATGT | 61.974 | 57.895 | 15.65 | 0.00 | 43.34 | 2.71 |
247 | 248 | 3.063997 | CGATCGAACAAATTAAGGCTGCT | 59.936 | 43.478 | 10.26 | 0.00 | 0.00 | 4.24 |
313 | 317 | 6.069206 | TCCCCATCATGAGATTTTCTTCTTCT | 60.069 | 38.462 | 0.09 | 0.00 | 30.20 | 2.85 |
314 | 318 | 6.125029 | TCCCCATCATGAGATTTTCTTCTTC | 58.875 | 40.000 | 0.09 | 0.00 | 30.20 | 2.87 |
315 | 319 | 6.083487 | TCCCCATCATGAGATTTTCTTCTT | 57.917 | 37.500 | 0.09 | 0.00 | 30.20 | 2.52 |
316 | 320 | 5.722172 | TCCCCATCATGAGATTTTCTTCT | 57.278 | 39.130 | 0.09 | 0.00 | 30.20 | 2.85 |
317 | 321 | 7.000472 | TGTATCCCCATCATGAGATTTTCTTC | 59.000 | 38.462 | 0.09 | 0.00 | 30.20 | 2.87 |
318 | 322 | 6.914665 | TGTATCCCCATCATGAGATTTTCTT | 58.085 | 36.000 | 0.09 | 0.00 | 30.20 | 2.52 |
319 | 323 | 6.520021 | TGTATCCCCATCATGAGATTTTCT | 57.480 | 37.500 | 0.09 | 0.00 | 30.20 | 2.52 |
320 | 324 | 6.944290 | TGATGTATCCCCATCATGAGATTTTC | 59.056 | 38.462 | 0.09 | 0.00 | 44.70 | 2.29 |
330 | 336 | 2.550639 | CGCATGTGATGTATCCCCATCA | 60.551 | 50.000 | 0.00 | 0.00 | 46.74 | 3.07 |
356 | 362 | 1.082104 | CGGCAGGAGTTTGCGAAAC | 60.082 | 57.895 | 0.00 | 0.00 | 45.00 | 2.78 |
359 | 365 | 2.357034 | GACGGCAGGAGTTTGCGA | 60.357 | 61.111 | 0.00 | 0.00 | 45.00 | 5.10 |
361 | 367 | 2.032681 | AGGACGGCAGGAGTTTGC | 59.967 | 61.111 | 0.00 | 0.00 | 43.34 | 3.68 |
367 | 373 | 3.371097 | GAATCGCAGGACGGCAGGA | 62.371 | 63.158 | 0.00 | 0.00 | 43.89 | 3.86 |
368 | 374 | 2.892425 | GAATCGCAGGACGGCAGG | 60.892 | 66.667 | 0.00 | 0.00 | 43.89 | 4.85 |
369 | 375 | 2.892425 | GGAATCGCAGGACGGCAG | 60.892 | 66.667 | 0.00 | 0.00 | 43.89 | 4.85 |
370 | 376 | 4.467084 | GGGAATCGCAGGACGGCA | 62.467 | 66.667 | 0.00 | 0.00 | 43.89 | 5.69 |
371 | 377 | 4.162690 | AGGGAATCGCAGGACGGC | 62.163 | 66.667 | 0.00 | 0.00 | 43.89 | 5.68 |
372 | 378 | 2.202932 | CAGGGAATCGCAGGACGG | 60.203 | 66.667 | 0.00 | 0.00 | 43.89 | 4.79 |
373 | 379 | 0.174845 | TAACAGGGAATCGCAGGACG | 59.825 | 55.000 | 0.00 | 0.00 | 45.62 | 4.79 |
374 | 380 | 2.396590 | TTAACAGGGAATCGCAGGAC | 57.603 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
388 | 394 | 3.339141 | TGTACGCATCAGGCATTTAACA | 58.661 | 40.909 | 0.00 | 0.00 | 45.17 | 2.41 |
389 | 395 | 4.095610 | GTTGTACGCATCAGGCATTTAAC | 58.904 | 43.478 | 0.00 | 0.00 | 45.17 | 2.01 |
453 | 459 | 2.238521 | GGGCTGTTGTTTGATGGAGAA | 58.761 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
459 | 465 | 0.110486 | ACGAGGGGCTGTTGTTTGAT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
508 | 514 | 3.658757 | AGAAGCCGAGAATAGCAGATC | 57.341 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
701 | 710 | 2.649129 | GGGATTGTGTGGCCAAGGC | 61.649 | 63.158 | 7.24 | 1.52 | 41.06 | 4.35 |
764 | 773 | 4.680237 | CCAACTGCCGAGACCGCA | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
776 | 785 | 0.102481 | CCGTCCGATTCGATCCAACT | 59.898 | 55.000 | 7.83 | 0.00 | 0.00 | 3.16 |
840 | 849 | 0.601576 | TACGCGTGTGCAAATGAGGT | 60.602 | 50.000 | 24.59 | 0.00 | 42.97 | 3.85 |
843 | 852 | 1.433534 | TCATACGCGTGTGCAAATGA | 58.566 | 45.000 | 28.53 | 21.18 | 42.97 | 2.57 |
844 | 853 | 2.239751 | TTCATACGCGTGTGCAAATG | 57.760 | 45.000 | 28.53 | 19.29 | 42.97 | 2.32 |
860 | 901 | 3.728845 | CAAGAAGAGAGGTTCGGTTTCA | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
867 | 908 | 3.584834 | GACTCTGCAAGAAGAGAGGTTC | 58.415 | 50.000 | 12.02 | 0.00 | 46.34 | 3.62 |
876 | 917 | 1.070758 | GGTGACTGGACTCTGCAAGAA | 59.929 | 52.381 | 3.37 | 0.00 | 46.34 | 2.52 |
877 | 918 | 0.681733 | GGTGACTGGACTCTGCAAGA | 59.318 | 55.000 | 3.37 | 0.00 | 43.69 | 3.02 |
881 | 943 | 0.530288 | GAGAGGTGACTGGACTCTGC | 59.470 | 60.000 | 0.00 | 0.00 | 44.43 | 4.26 |
950 | 1016 | 1.221466 | CGCACTGCACTTTCTCGGAA | 61.221 | 55.000 | 1.11 | 0.00 | 0.00 | 4.30 |
985 | 1051 | 1.383664 | CCATGGAGGGAGGCTCTCA | 60.384 | 63.158 | 18.31 | 9.65 | 33.18 | 3.27 |
1005 | 1071 | 3.844090 | GAGCCGGAGAGACCAGCC | 61.844 | 72.222 | 5.05 | 0.00 | 42.63 | 4.85 |
1257 | 1323 | 4.475135 | GCCTTCCTCTCCGCCACC | 62.475 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
1389 | 1455 | 2.791158 | CGAAAATGAATGGCTGGTACGC | 60.791 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
1404 | 1501 | 4.201822 | GCAACGAGGAAAGATAGCGAAAAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1471 | 1568 | 3.365265 | CCAGTCAAGCCCAACCGC | 61.365 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1490 | 1587 | 1.954146 | GTCAGTTTCAGCGACGGCA | 60.954 | 57.895 | 0.00 | 0.00 | 43.41 | 5.69 |
1496 | 1593 | 1.510623 | GCGCATGTCAGTTTCAGCG | 60.511 | 57.895 | 0.30 | 0.00 | 46.99 | 5.18 |
1637 | 1738 | 1.675714 | GCCCAAATTTTAGCCTGGTGC | 60.676 | 52.381 | 0.00 | 0.00 | 41.71 | 5.01 |
1861 | 2002 | 3.115892 | CTTACCGCGCCGAAGCAA | 61.116 | 61.111 | 0.00 | 0.00 | 39.83 | 3.91 |
1942 | 2129 | 1.105759 | GGATGGTTCTGGCTGATGGC | 61.106 | 60.000 | 0.00 | 0.00 | 40.90 | 4.40 |
1948 | 2135 | 1.417890 | CCTAATCGGATGGTTCTGGCT | 59.582 | 52.381 | 0.00 | 0.00 | 33.16 | 4.75 |
1987 | 2245 | 1.690219 | CGAGGCCCTGTAGGAAGCAT | 61.690 | 60.000 | 0.00 | 0.00 | 38.24 | 3.79 |
2154 | 2412 | 2.291043 | ACGTACTGCCCCAAGGAGG | 61.291 | 63.158 | 0.00 | 0.00 | 33.47 | 4.30 |
2194 | 2459 | 6.427547 | CCACCACATAATCAGCACAAATTTTT | 59.572 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
2198 | 2463 | 4.082081 | CACCACCACATAATCAGCACAAAT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2602 | 2880 | 5.983540 | TCAATAGCAACCACCAAAAAGTTT | 58.016 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2659 | 2937 | 0.253044 | TCATTAGCTTGCTTCCGGCT | 59.747 | 50.000 | 0.00 | 0.00 | 42.39 | 5.52 |
2663 | 2941 | 2.292845 | GCCTGATCATTAGCTTGCTTCC | 59.707 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2746 | 3028 | 4.225942 | TGAACCATCTGTGCTTCTTCCTAT | 59.774 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2797 | 3084 | 1.099689 | GTGAGAGAGACCTCGAAGGG | 58.900 | 60.000 | 5.98 | 0.00 | 44.08 | 3.95 |
2808 | 3095 | 4.838486 | GCGGACGCGGTGAGAGAG | 62.838 | 72.222 | 12.47 | 0.00 | 0.00 | 3.20 |
2810 | 3097 | 3.989698 | AATGCGGACGCGGTGAGAG | 62.990 | 63.158 | 12.47 | 0.00 | 45.51 | 3.20 |
2811 | 3098 | 3.583276 | AAATGCGGACGCGGTGAGA | 62.583 | 57.895 | 12.47 | 0.00 | 45.51 | 3.27 |
2824 | 3111 | 3.559655 | GGGTCTCCACAAAACAAAAATGC | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
2913 | 3200 | 4.552166 | ACTTTCATTGAAGTGGTTCACG | 57.448 | 40.909 | 0.00 | 0.00 | 42.60 | 4.35 |
2972 | 3259 | 4.281941 | AGAAAGGAGGAAACATGGAAAAGC | 59.718 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3036 | 3358 | 6.611613 | ATCAACAGAGTTGGAAGAGATACA | 57.388 | 37.500 | 9.72 | 0.00 | 0.00 | 2.29 |
3038 | 3360 | 8.156820 | TCAAAATCAACAGAGTTGGAAGAGATA | 58.843 | 33.333 | 9.72 | 0.00 | 0.00 | 1.98 |
3127 | 3505 | 5.735766 | TGACCGACCATTGATGTGTTTATA | 58.264 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
3132 | 3510 | 1.339055 | CCTGACCGACCATTGATGTGT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
3136 | 3514 | 1.224592 | GGCCTGACCGACCATTGAT | 59.775 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
3137 | 3515 | 1.488705 | AAGGCCTGACCGACCATTGA | 61.489 | 55.000 | 5.69 | 0.00 | 46.52 | 2.57 |
3138 | 3516 | 1.002134 | AAGGCCTGACCGACCATTG | 60.002 | 57.895 | 5.69 | 0.00 | 46.52 | 2.82 |
3139 | 3517 | 1.299976 | GAAGGCCTGACCGACCATT | 59.700 | 57.895 | 5.69 | 0.00 | 46.52 | 3.16 |
3140 | 3518 | 1.274703 | ATGAAGGCCTGACCGACCAT | 61.275 | 55.000 | 5.69 | 0.00 | 46.52 | 3.55 |
3141 | 3519 | 0.616395 | TATGAAGGCCTGACCGACCA | 60.616 | 55.000 | 5.69 | 0.00 | 46.52 | 4.02 |
3142 | 3520 | 0.539986 | TTATGAAGGCCTGACCGACC | 59.460 | 55.000 | 5.69 | 0.00 | 46.52 | 4.79 |
3143 | 3521 | 2.622064 | ATTATGAAGGCCTGACCGAC | 57.378 | 50.000 | 5.69 | 0.00 | 46.52 | 4.79 |
3144 | 3522 | 4.444306 | CCTTAATTATGAAGGCCTGACCGA | 60.444 | 45.833 | 5.69 | 0.00 | 46.52 | 4.69 |
3145 | 3523 | 3.815401 | CCTTAATTATGAAGGCCTGACCG | 59.185 | 47.826 | 5.69 | 0.00 | 46.52 | 4.79 |
3146 | 3524 | 4.141251 | TCCCTTAATTATGAAGGCCTGACC | 60.141 | 45.833 | 5.69 | 0.00 | 41.95 | 4.02 |
3147 | 3525 | 5.048846 | TCCCTTAATTATGAAGGCCTGAC | 57.951 | 43.478 | 5.69 | 4.34 | 41.95 | 3.51 |
3148 | 3526 | 5.930209 | ATCCCTTAATTATGAAGGCCTGA | 57.070 | 39.130 | 5.69 | 0.00 | 41.95 | 3.86 |
3149 | 3527 | 8.655935 | AATTATCCCTTAATTATGAAGGCCTG | 57.344 | 34.615 | 5.69 | 0.00 | 41.95 | 4.85 |
3202 | 3580 | 7.713942 | CACCTGTAGTGTAGTTAACTCCTTTTT | 59.286 | 37.037 | 12.39 | 0.00 | 41.93 | 1.94 |
3203 | 3581 | 7.215085 | CACCTGTAGTGTAGTTAACTCCTTTT | 58.785 | 38.462 | 12.39 | 0.00 | 41.93 | 2.27 |
3204 | 3582 | 6.756221 | CACCTGTAGTGTAGTTAACTCCTTT | 58.244 | 40.000 | 12.39 | 0.00 | 41.93 | 3.11 |
3205 | 3583 | 6.342338 | CACCTGTAGTGTAGTTAACTCCTT | 57.658 | 41.667 | 12.39 | 0.00 | 41.93 | 3.36 |
3206 | 3584 | 5.979288 | CACCTGTAGTGTAGTTAACTCCT | 57.021 | 43.478 | 12.39 | 9.23 | 41.93 | 3.69 |
3226 | 3604 | 0.249911 | CACCGGATAAGCTAGGGCAC | 60.250 | 60.000 | 9.46 | 0.00 | 41.70 | 5.01 |
3227 | 3605 | 2.040009 | GCACCGGATAAGCTAGGGCA | 62.040 | 60.000 | 9.46 | 0.00 | 41.70 | 5.36 |
3228 | 3606 | 1.301795 | GCACCGGATAAGCTAGGGC | 60.302 | 63.158 | 9.46 | 0.00 | 39.06 | 5.19 |
3229 | 3607 | 1.006102 | CGCACCGGATAAGCTAGGG | 60.006 | 63.158 | 9.46 | 0.00 | 0.00 | 3.53 |
3230 | 3608 | 4.655527 | CGCACCGGATAAGCTAGG | 57.344 | 61.111 | 9.46 | 0.00 | 0.00 | 3.02 |
3241 | 3619 | 2.590575 | ACCAAACTGACCGCACCG | 60.591 | 61.111 | 0.00 | 0.00 | 0.00 | 4.94 |
3242 | 3620 | 3.030652 | CACCAAACTGACCGCACC | 58.969 | 61.111 | 0.00 | 0.00 | 0.00 | 5.01 |
3243 | 3621 | 2.331451 | GCACCAAACTGACCGCAC | 59.669 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
3244 | 3622 | 2.046009 | TAGGCACCAAACTGACCGCA | 62.046 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
3245 | 3623 | 0.887387 | TTAGGCACCAAACTGACCGC | 60.887 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3246 | 3624 | 1.265905 | GTTTAGGCACCAAACTGACCG | 59.734 | 52.381 | 7.20 | 0.00 | 33.91 | 4.79 |
3247 | 3625 | 2.583143 | AGTTTAGGCACCAAACTGACC | 58.417 | 47.619 | 13.13 | 0.00 | 42.98 | 4.02 |
3248 | 3626 | 3.630312 | TCAAGTTTAGGCACCAAACTGAC | 59.370 | 43.478 | 14.07 | 0.00 | 43.62 | 3.51 |
3249 | 3627 | 3.892284 | TCAAGTTTAGGCACCAAACTGA | 58.108 | 40.909 | 14.07 | 11.62 | 43.62 | 3.41 |
3250 | 3628 | 4.647424 | TTCAAGTTTAGGCACCAAACTG | 57.353 | 40.909 | 14.07 | 10.26 | 43.62 | 3.16 |
3251 | 3629 | 5.669164 | TTTTCAAGTTTAGGCACCAAACT | 57.331 | 34.783 | 9.87 | 9.87 | 45.73 | 2.66 |
3252 | 3630 | 6.918892 | ATTTTTCAAGTTTAGGCACCAAAC | 57.081 | 33.333 | 6.62 | 6.62 | 36.37 | 2.93 |
3253 | 3631 | 7.492994 | GTGTATTTTTCAAGTTTAGGCACCAAA | 59.507 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
3254 | 3632 | 6.981559 | GTGTATTTTTCAAGTTTAGGCACCAA | 59.018 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
3255 | 3633 | 6.096987 | TGTGTATTTTTCAAGTTTAGGCACCA | 59.903 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
3256 | 3634 | 6.508777 | TGTGTATTTTTCAAGTTTAGGCACC | 58.491 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3257 | 3635 | 7.995463 | TTGTGTATTTTTCAAGTTTAGGCAC | 57.005 | 32.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3258 | 3636 | 9.092876 | CTTTTGTGTATTTTTCAAGTTTAGGCA | 57.907 | 29.630 | 0.00 | 0.00 | 0.00 | 4.75 |
3259 | 3637 | 9.093970 | ACTTTTGTGTATTTTTCAAGTTTAGGC | 57.906 | 29.630 | 0.00 | 0.00 | 0.00 | 3.93 |
3278 | 3656 | 5.815740 | AGACAAGTTACGACATCACTTTTGT | 59.184 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3279 | 3657 | 6.129393 | CAGACAAGTTACGACATCACTTTTG | 58.871 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3280 | 3658 | 5.236478 | CCAGACAAGTTACGACATCACTTTT | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3281 | 3659 | 4.750098 | CCAGACAAGTTACGACATCACTTT | 59.250 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
3282 | 3660 | 4.307432 | CCAGACAAGTTACGACATCACTT | 58.693 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3283 | 3661 | 3.306088 | CCCAGACAAGTTACGACATCACT | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
3284 | 3662 | 2.993899 | CCCAGACAAGTTACGACATCAC | 59.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3285 | 3663 | 2.611971 | GCCCAGACAAGTTACGACATCA | 60.612 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3286 | 3664 | 2.000447 | GCCCAGACAAGTTACGACATC | 59.000 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3287 | 3665 | 1.671850 | CGCCCAGACAAGTTACGACAT | 60.672 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3288 | 3666 | 0.319211 | CGCCCAGACAAGTTACGACA | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3289 | 3667 | 0.319297 | ACGCCCAGACAAGTTACGAC | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3290 | 3668 | 0.390124 | AACGCCCAGACAAGTTACGA | 59.610 | 50.000 | 0.00 | 0.00 | 0.00 | 3.43 |
3291 | 3669 | 0.788391 | GAACGCCCAGACAAGTTACG | 59.212 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3292 | 3670 | 1.873698 | TGAACGCCCAGACAAGTTAC | 58.126 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
3293 | 3671 | 2.623878 | TTGAACGCCCAGACAAGTTA | 57.376 | 45.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3294 | 3672 | 1.757682 | TTTGAACGCCCAGACAAGTT | 58.242 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3295 | 3673 | 1.981256 | ATTTGAACGCCCAGACAAGT | 58.019 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3296 | 3674 | 2.159707 | CGTATTTGAACGCCCAGACAAG | 60.160 | 50.000 | 0.00 | 0.00 | 35.87 | 3.16 |
3297 | 3675 | 1.801771 | CGTATTTGAACGCCCAGACAA | 59.198 | 47.619 | 0.00 | 0.00 | 35.87 | 3.18 |
3298 | 3676 | 1.434555 | CGTATTTGAACGCCCAGACA | 58.565 | 50.000 | 0.00 | 0.00 | 35.87 | 3.41 |
3299 | 3677 | 0.725117 | CCGTATTTGAACGCCCAGAC | 59.275 | 55.000 | 0.00 | 0.00 | 41.51 | 3.51 |
3300 | 3678 | 0.322322 | ACCGTATTTGAACGCCCAGA | 59.678 | 50.000 | 0.00 | 0.00 | 41.51 | 3.86 |
3301 | 3679 | 0.446222 | CACCGTATTTGAACGCCCAG | 59.554 | 55.000 | 0.00 | 0.00 | 41.51 | 4.45 |
3302 | 3680 | 1.579084 | GCACCGTATTTGAACGCCCA | 61.579 | 55.000 | 0.00 | 0.00 | 41.51 | 5.36 |
3303 | 3681 | 1.135939 | GCACCGTATTTGAACGCCC | 59.864 | 57.895 | 0.00 | 0.00 | 41.51 | 6.13 |
3304 | 3682 | 1.135939 | GGCACCGTATTTGAACGCC | 59.864 | 57.895 | 0.00 | 0.00 | 41.51 | 5.68 |
3305 | 3683 | 0.096454 | GAGGCACCGTATTTGAACGC | 59.904 | 55.000 | 0.00 | 0.00 | 41.51 | 4.84 |
3306 | 3684 | 1.722011 | AGAGGCACCGTATTTGAACG | 58.278 | 50.000 | 0.00 | 0.00 | 42.49 | 3.95 |
3307 | 3685 | 3.864003 | GTCTAGAGGCACCGTATTTGAAC | 59.136 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
3308 | 3686 | 3.428452 | CGTCTAGAGGCACCGTATTTGAA | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
3309 | 3687 | 2.098607 | CGTCTAGAGGCACCGTATTTGA | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3310 | 3688 | 2.159282 | ACGTCTAGAGGCACCGTATTTG | 60.159 | 50.000 | 12.30 | 0.00 | 0.00 | 2.32 |
3311 | 3689 | 2.097825 | ACGTCTAGAGGCACCGTATTT | 58.902 | 47.619 | 12.30 | 0.00 | 0.00 | 1.40 |
3312 | 3690 | 1.760192 | ACGTCTAGAGGCACCGTATT | 58.240 | 50.000 | 12.30 | 0.00 | 0.00 | 1.89 |
3313 | 3691 | 2.627515 | TACGTCTAGAGGCACCGTAT | 57.372 | 50.000 | 12.30 | 0.00 | 33.32 | 3.06 |
3314 | 3692 | 2.216046 | CATACGTCTAGAGGCACCGTA | 58.784 | 52.381 | 12.30 | 12.71 | 38.24 | 4.02 |
3315 | 3693 | 1.022735 | CATACGTCTAGAGGCACCGT | 58.977 | 55.000 | 12.30 | 10.95 | 35.68 | 4.83 |
3316 | 3694 | 0.317938 | GCATACGTCTAGAGGCACCG | 60.318 | 60.000 | 12.30 | 5.30 | 0.00 | 4.94 |
3317 | 3695 | 0.032267 | GGCATACGTCTAGAGGCACC | 59.968 | 60.000 | 12.30 | 5.31 | 0.00 | 5.01 |
3318 | 3696 | 0.317938 | CGGCATACGTCTAGAGGCAC | 60.318 | 60.000 | 12.30 | 0.00 | 37.93 | 5.01 |
3319 | 3697 | 2.030551 | CGGCATACGTCTAGAGGCA | 58.969 | 57.895 | 12.30 | 0.00 | 37.93 | 4.75 |
3320 | 3698 | 1.371881 | GCGGCATACGTCTAGAGGC | 60.372 | 63.158 | 12.30 | 2.53 | 46.52 | 4.70 |
3321 | 3699 | 1.286260 | GGCGGCATACGTCTAGAGG | 59.714 | 63.158 | 10.86 | 10.86 | 45.50 | 3.69 |
3322 | 3700 | 4.946411 | GGCGGCATACGTCTAGAG | 57.054 | 61.111 | 3.07 | 0.00 | 45.50 | 2.43 |
3327 | 3705 | 2.078914 | CGATACGGCGGCATACGTC | 61.079 | 63.158 | 13.24 | 0.00 | 46.52 | 4.34 |
3328 | 3706 | 2.050714 | CGATACGGCGGCATACGT | 60.051 | 61.111 | 13.24 | 5.09 | 46.52 | 3.57 |
3330 | 3708 | 1.002250 | CACTCGATACGGCGGCATAC | 61.002 | 60.000 | 13.24 | 0.00 | 0.00 | 2.39 |
3331 | 3709 | 1.284715 | CACTCGATACGGCGGCATA | 59.715 | 57.895 | 13.24 | 0.00 | 0.00 | 3.14 |
3332 | 3710 | 2.027605 | CACTCGATACGGCGGCAT | 59.972 | 61.111 | 13.24 | 3.47 | 0.00 | 4.40 |
3333 | 3711 | 4.865761 | GCACTCGATACGGCGGCA | 62.866 | 66.667 | 13.24 | 0.00 | 0.00 | 5.69 |
3335 | 3713 | 4.944372 | GGGCACTCGATACGGCGG | 62.944 | 72.222 | 13.24 | 0.00 | 0.00 | 6.13 |
3339 | 3717 | 4.547905 | ACGCGGGCACTCGATACG | 62.548 | 66.667 | 12.47 | 0.00 | 0.00 | 3.06 |
3340 | 3718 | 2.954868 | CACGCGGGCACTCGATAC | 60.955 | 66.667 | 12.47 | 0.00 | 0.00 | 2.24 |
3341 | 3719 | 4.201679 | CCACGCGGGCACTCGATA | 62.202 | 66.667 | 12.47 | 0.00 | 0.00 | 2.92 |
3351 | 3729 | 3.499737 | GACTGGAATGCCACGCGG | 61.500 | 66.667 | 12.47 | 0.00 | 39.92 | 6.46 |
3352 | 3730 | 2.434884 | AGACTGGAATGCCACGCG | 60.435 | 61.111 | 3.53 | 3.53 | 39.92 | 6.01 |
3353 | 3731 | 1.639298 | GACAGACTGGAATGCCACGC | 61.639 | 60.000 | 7.51 | 0.00 | 39.92 | 5.34 |
3354 | 3732 | 1.354337 | CGACAGACTGGAATGCCACG | 61.354 | 60.000 | 7.51 | 0.00 | 39.92 | 4.94 |
3355 | 3733 | 1.639298 | GCGACAGACTGGAATGCCAC | 61.639 | 60.000 | 7.51 | 0.00 | 39.92 | 5.01 |
3356 | 3734 | 1.375908 | GCGACAGACTGGAATGCCA | 60.376 | 57.895 | 7.51 | 0.00 | 43.47 | 4.92 |
3357 | 3735 | 0.175760 | TAGCGACAGACTGGAATGCC | 59.824 | 55.000 | 7.51 | 0.00 | 0.00 | 4.40 |
3358 | 3736 | 1.565305 | CTAGCGACAGACTGGAATGC | 58.435 | 55.000 | 7.51 | 5.01 | 0.00 | 3.56 |
3359 | 3737 | 1.804372 | GCCTAGCGACAGACTGGAATG | 60.804 | 57.143 | 7.51 | 0.00 | 0.00 | 2.67 |
3360 | 3738 | 0.461961 | GCCTAGCGACAGACTGGAAT | 59.538 | 55.000 | 7.51 | 0.00 | 0.00 | 3.01 |
3361 | 3739 | 1.605058 | GGCCTAGCGACAGACTGGAA | 61.605 | 60.000 | 7.51 | 0.00 | 0.00 | 3.53 |
3362 | 3740 | 2.052690 | GGCCTAGCGACAGACTGGA | 61.053 | 63.158 | 7.51 | 0.00 | 0.00 | 3.86 |
3363 | 3741 | 2.351244 | TGGCCTAGCGACAGACTGG | 61.351 | 63.158 | 3.32 | 0.00 | 0.00 | 4.00 |
3364 | 3742 | 1.153745 | GTGGCCTAGCGACAGACTG | 60.154 | 63.158 | 3.32 | 0.00 | 37.24 | 3.51 |
3365 | 3743 | 1.606601 | TGTGGCCTAGCGACAGACT | 60.607 | 57.895 | 3.32 | 0.00 | 41.89 | 3.24 |
3366 | 3744 | 2.970639 | TGTGGCCTAGCGACAGAC | 59.029 | 61.111 | 3.32 | 0.00 | 41.89 | 3.51 |
3370 | 3748 | 0.807667 | CTGACATGTGGCCTAGCGAC | 60.808 | 60.000 | 1.15 | 0.00 | 37.76 | 5.19 |
3371 | 3749 | 1.517361 | CTGACATGTGGCCTAGCGA | 59.483 | 57.895 | 1.15 | 0.00 | 0.00 | 4.93 |
3372 | 3750 | 2.176273 | GCTGACATGTGGCCTAGCG | 61.176 | 63.158 | 1.15 | 0.00 | 0.00 | 4.26 |
3373 | 3751 | 2.176273 | CGCTGACATGTGGCCTAGC | 61.176 | 63.158 | 1.15 | 4.40 | 0.00 | 3.42 |
3374 | 3752 | 1.522355 | CCGCTGACATGTGGCCTAG | 60.522 | 63.158 | 1.15 | 0.00 | 0.00 | 3.02 |
3375 | 3753 | 1.836999 | AACCGCTGACATGTGGCCTA | 61.837 | 55.000 | 1.15 | 0.00 | 41.02 | 3.93 |
3376 | 3754 | 3.196207 | AACCGCTGACATGTGGCCT | 62.196 | 57.895 | 1.15 | 0.00 | 41.02 | 5.19 |
3377 | 3755 | 2.672996 | AACCGCTGACATGTGGCC | 60.673 | 61.111 | 1.15 | 0.00 | 41.02 | 5.36 |
3378 | 3756 | 2.562912 | CAACCGCTGACATGTGGC | 59.437 | 61.111 | 1.15 | 6.71 | 41.02 | 5.01 |
3379 | 3757 | 2.562912 | GCAACCGCTGACATGTGG | 59.437 | 61.111 | 1.15 | 0.00 | 42.85 | 4.17 |
3380 | 3758 | 0.673333 | TAGGCAACCGCTGACATGTG | 60.673 | 55.000 | 1.15 | 0.00 | 34.24 | 3.21 |
3381 | 3759 | 0.673644 | GTAGGCAACCGCTGACATGT | 60.674 | 55.000 | 0.00 | 0.00 | 34.24 | 3.21 |
3382 | 3760 | 1.695893 | CGTAGGCAACCGCTGACATG | 61.696 | 60.000 | 0.00 | 0.00 | 34.24 | 3.21 |
3383 | 3761 | 1.447838 | CGTAGGCAACCGCTGACAT | 60.448 | 57.895 | 0.00 | 0.00 | 34.24 | 3.06 |
3384 | 3762 | 2.048597 | CGTAGGCAACCGCTGACA | 60.049 | 61.111 | 0.00 | 0.00 | 34.24 | 3.58 |
3385 | 3763 | 3.488090 | GCGTAGGCAACCGCTGAC | 61.488 | 66.667 | 1.75 | 0.00 | 46.08 | 3.51 |
3391 | 3769 | 4.439472 | CAACGCGCGTAGGCAACC | 62.439 | 66.667 | 37.93 | 0.00 | 39.92 | 3.77 |
3392 | 3770 | 3.708734 | ACAACGCGCGTAGGCAAC | 61.709 | 61.111 | 37.93 | 0.00 | 39.92 | 4.17 |
3393 | 3771 | 3.707700 | CACAACGCGCGTAGGCAA | 61.708 | 61.111 | 37.93 | 0.00 | 39.92 | 4.52 |
3394 | 3772 | 4.649310 | TCACAACGCGCGTAGGCA | 62.649 | 61.111 | 37.93 | 18.08 | 39.92 | 4.75 |
3395 | 3773 | 3.838795 | CTCACAACGCGCGTAGGC | 61.839 | 66.667 | 37.93 | 0.00 | 0.00 | 3.93 |
3396 | 3774 | 2.860690 | TAGCTCACAACGCGCGTAGG | 62.861 | 60.000 | 37.93 | 31.29 | 0.00 | 3.18 |
3397 | 3775 | 0.866061 | ATAGCTCACAACGCGCGTAG | 60.866 | 55.000 | 37.93 | 29.26 | 0.00 | 3.51 |
3398 | 3776 | 1.137459 | CATAGCTCACAACGCGCGTA | 61.137 | 55.000 | 37.93 | 20.08 | 0.00 | 4.42 |
3399 | 3777 | 2.126071 | ATAGCTCACAACGCGCGT | 60.126 | 55.556 | 32.73 | 32.73 | 0.00 | 6.01 |
3400 | 3778 | 2.317689 | CATAGCTCACAACGCGCG | 59.682 | 61.111 | 30.96 | 30.96 | 0.00 | 6.86 |
3401 | 3779 | 2.021931 | GCATAGCTCACAACGCGC | 59.978 | 61.111 | 5.73 | 0.00 | 0.00 | 6.86 |
3402 | 3780 | 0.315625 | CATGCATAGCTCACAACGCG | 60.316 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
3403 | 3781 | 0.729116 | ACATGCATAGCTCACAACGC | 59.271 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
3404 | 3782 | 2.160219 | ACAACATGCATAGCTCACAACG | 59.840 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
3405 | 3783 | 3.837213 | ACAACATGCATAGCTCACAAC | 57.163 | 42.857 | 0.00 | 0.00 | 0.00 | 3.32 |
3406 | 3784 | 4.852134 | AAACAACATGCATAGCTCACAA | 57.148 | 36.364 | 0.00 | 0.00 | 0.00 | 3.33 |
3407 | 3785 | 4.852134 | AAAACAACATGCATAGCTCACA | 57.148 | 36.364 | 0.00 | 0.00 | 0.00 | 3.58 |
3433 | 3811 | 3.774842 | TTAAAATCCAGGGGCATTCCT | 57.225 | 42.857 | 0.00 | 0.00 | 37.71 | 3.36 |
3434 | 3812 | 6.493189 | TTAATTAAAATCCAGGGGCATTCC | 57.507 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
3435 | 3813 | 8.978874 | AAATTAATTAAAATCCAGGGGCATTC | 57.021 | 30.769 | 1.21 | 0.00 | 0.00 | 2.67 |
3436 | 3814 | 9.407380 | GAAAATTAATTAAAATCCAGGGGCATT | 57.593 | 29.630 | 1.21 | 0.00 | 0.00 | 3.56 |
3437 | 3815 | 7.714813 | CGAAAATTAATTAAAATCCAGGGGCAT | 59.285 | 33.333 | 1.21 | 0.00 | 0.00 | 4.40 |
3438 | 3816 | 7.044798 | CGAAAATTAATTAAAATCCAGGGGCA | 58.955 | 34.615 | 1.21 | 0.00 | 0.00 | 5.36 |
3439 | 3817 | 6.018262 | GCGAAAATTAATTAAAATCCAGGGGC | 60.018 | 38.462 | 1.21 | 0.00 | 0.00 | 5.80 |
3440 | 3818 | 7.044798 | TGCGAAAATTAATTAAAATCCAGGGG | 58.955 | 34.615 | 1.21 | 0.00 | 0.00 | 4.79 |
3441 | 3819 | 8.485976 | TTGCGAAAATTAATTAAAATCCAGGG | 57.514 | 30.769 | 1.21 | 0.00 | 0.00 | 4.45 |
3491 | 3869 | 0.249953 | TACGCTGACTCCCGCAAAAA | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3492 | 3870 | 0.947180 | GTACGCTGACTCCCGCAAAA | 60.947 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3493 | 3871 | 1.373748 | GTACGCTGACTCCCGCAAA | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.68 |
3494 | 3872 | 2.260434 | GTACGCTGACTCCCGCAA | 59.740 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
3495 | 3873 | 2.986979 | TGTACGCTGACTCCCGCA | 60.987 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
3496 | 3874 | 2.202623 | CTGTACGCTGACTCCCGC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3497 | 3875 | 2.490217 | CCTGTACGCTGACTCCCG | 59.510 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
3498 | 3876 | 1.681327 | TCCCTGTACGCTGACTCCC | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3499 | 3877 | 1.511768 | GTCCCTGTACGCTGACTCC | 59.488 | 63.158 | 2.30 | 0.00 | 0.00 | 3.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.