Multiple sequence alignment - TraesCS2D01G393900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G393900 chr2D 100.000 3518 0 0 1 3518 503585675 503582158 0.000000e+00 6497.0
1 TraesCS2D01G393900 chr2A 93.419 2188 100 20 876 3027 649621448 649619269 0.000000e+00 3203.0
2 TraesCS2D01G393900 chr2A 89.790 666 49 10 192 852 649622179 649621528 0.000000e+00 835.0
3 TraesCS2D01G393900 chr2A 93.548 62 4 0 3075 3136 649619132 649619071 3.740000e-15 93.5
4 TraesCS2D01G393900 chr2B 93.843 2160 72 18 876 3027 592530776 592528670 0.000000e+00 3195.0
5 TraesCS2D01G393900 chr2B 91.269 733 45 10 124 852 592531566 592530849 0.000000e+00 981.0
6 TraesCS2D01G393900 chr2B 90.071 282 26 2 3209 3489 521506929 521506649 7.180000e-97 364.0
7 TraesCS2D01G393900 chr2B 86.517 89 6 4 3053 3135 592528566 592528478 3.740000e-15 93.5
8 TraesCS2D01G393900 chr2B 93.878 49 3 0 3006 3054 592528656 592528608 1.350000e-09 75.0
9 TraesCS2D01G393900 chr3D 96.262 321 10 2 3199 3518 260971048 260971367 3.110000e-145 525.0
10 TraesCS2D01G393900 chr4D 95.652 322 10 4 3199 3518 459257774 459257455 6.730000e-142 514.0
11 TraesCS2D01G393900 chr4D 88.382 241 23 4 1656 1894 480815045 480814808 5.750000e-73 285.0
12 TraesCS2D01G393900 chr4D 88.889 117 13 0 1273 1389 480815446 480815330 1.020000e-30 145.0
13 TraesCS2D01G393900 chr7B 94.681 282 14 1 3209 3489 334801234 334800953 1.500000e-118 436.0
14 TraesCS2D01G393900 chr7B 92.883 281 19 1 3209 3489 313776007 313775728 1.180000e-109 407.0
15 TraesCS2D01G393900 chr7B 92.527 281 21 0 3209 3489 407202855 407202575 1.520000e-108 403.0
16 TraesCS2D01G393900 chr1B 91.065 291 23 3 3201 3489 608351723 608351434 1.180000e-104 390.0
17 TraesCS2D01G393900 chr4A 91.459 281 24 0 3209 3489 650310497 650310217 1.530000e-103 387.0
18 TraesCS2D01G393900 chr6B 90.426 282 26 1 3209 3489 481266686 481266405 1.540000e-98 370.0
19 TraesCS2D01G393900 chr4B 88.841 233 22 3 1664 1894 608624696 608624466 2.070000e-72 283.0
20 TraesCS2D01G393900 chr4B 92.857 140 8 2 555 693 335599576 335599438 5.950000e-48 202.0
21 TraesCS2D01G393900 chr4B 89.130 138 15 0 1994 2131 608624249 608624112 4.670000e-39 172.0
22 TraesCS2D01G393900 chr5A 90.000 210 21 0 1664 1873 662752327 662752536 4.470000e-69 272.0
23 TraesCS2D01G393900 chr7A 81.884 138 22 3 9 144 244449515 244449651 2.870000e-21 113.0
24 TraesCS2D01G393900 chr1D 80.328 122 22 2 24 144 50991534 50991654 1.340000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G393900 chr2D 503582158 503585675 3517 True 6497.000000 6497 100.000000 1 3518 1 chr2D.!!$R1 3517
1 TraesCS2D01G393900 chr2A 649619071 649622179 3108 True 1377.166667 3203 92.252333 192 3136 3 chr2A.!!$R1 2944
2 TraesCS2D01G393900 chr2B 592528478 592531566 3088 True 1086.125000 3195 91.376750 124 3135 4 chr2B.!!$R2 3011
3 TraesCS2D01G393900 chr4D 480814808 480815446 638 True 215.000000 285 88.635500 1273 1894 2 chr4D.!!$R2 621
4 TraesCS2D01G393900 chr4B 608624112 608624696 584 True 227.500000 283 88.985500 1664 2131 2 chr4B.!!$R2 467


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.041312 CGGCAAGGTCTTTCGTTGTG 60.041 55.0 0.0 0.0 41.97 3.33 F
1930 2117 0.038159 CCGAACCACAGTGTCTCTCC 60.038 60.0 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2129 1.105759 GGATGGTTCTGGCTGATGGC 61.106 60.0 0.0 0.00 40.9 4.40 R
3317 3695 0.032267 GGCATACGTCTAGAGGCACC 59.968 60.0 12.3 5.31 0.0 5.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.452733 GTAGCGGCGGCAAGGTCT 62.453 66.667 19.21 0.00 43.41 3.85
57 58 3.702048 TAGCGGCGGCAAGGTCTT 61.702 61.111 19.21 0.00 43.41 3.01
58 59 3.248446 TAGCGGCGGCAAGGTCTTT 62.248 57.895 19.21 0.00 43.41 2.52
59 60 4.103103 GCGGCGGCAAGGTCTTTC 62.103 66.667 9.78 0.00 39.62 2.62
60 61 3.788766 CGGCGGCAAGGTCTTTCG 61.789 66.667 10.53 0.00 0.00 3.46
61 62 2.668550 GGCGGCAAGGTCTTTCGT 60.669 61.111 3.07 0.00 0.00 3.85
62 63 2.258726 GGCGGCAAGGTCTTTCGTT 61.259 57.895 3.07 0.00 0.00 3.85
63 64 1.082104 GCGGCAAGGTCTTTCGTTG 60.082 57.895 0.00 0.00 42.58 4.10
64 65 1.782028 GCGGCAAGGTCTTTCGTTGT 61.782 55.000 0.00 0.00 41.97 3.32
65 66 0.041312 CGGCAAGGTCTTTCGTTGTG 60.041 55.000 0.00 0.00 41.97 3.33
66 67 0.310854 GGCAAGGTCTTTCGTTGTGG 59.689 55.000 0.00 0.00 41.97 4.17
67 68 0.310854 GCAAGGTCTTTCGTTGTGGG 59.689 55.000 0.00 0.00 41.97 4.61
68 69 0.951558 CAAGGTCTTTCGTTGTGGGG 59.048 55.000 0.00 0.00 37.21 4.96
69 70 0.549469 AAGGTCTTTCGTTGTGGGGT 59.451 50.000 0.00 0.00 0.00 4.95
70 71 0.179029 AGGTCTTTCGTTGTGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
71 72 1.170290 GGTCTTTCGTTGTGGGGTGG 61.170 60.000 0.00 0.00 0.00 4.61
72 73 1.149627 TCTTTCGTTGTGGGGTGGG 59.850 57.895 0.00 0.00 0.00 4.61
73 74 1.901464 CTTTCGTTGTGGGGTGGGG 60.901 63.158 0.00 0.00 0.00 4.96
74 75 3.438615 TTTCGTTGTGGGGTGGGGG 62.439 63.158 0.00 0.00 0.00 5.40
96 97 3.508840 CGGCGGTGGGCTTTGATC 61.509 66.667 0.00 0.00 42.94 2.92
97 98 3.140814 GGCGGTGGGCTTTGATCC 61.141 66.667 0.00 0.00 42.94 3.36
98 99 3.140814 GCGGTGGGCTTTGATCCC 61.141 66.667 0.00 0.00 44.17 3.85
99 100 2.440247 CGGTGGGCTTTGATCCCC 60.440 66.667 0.00 0.00 43.24 4.81
100 101 2.042944 GGTGGGCTTTGATCCCCC 60.043 66.667 2.63 2.26 43.24 5.40
101 102 2.626467 GGTGGGCTTTGATCCCCCT 61.626 63.158 2.63 0.00 43.24 4.79
102 103 1.380380 GTGGGCTTTGATCCCCCTG 60.380 63.158 2.63 0.00 43.24 4.45
103 104 2.280079 GGGCTTTGATCCCCCTGG 59.720 66.667 0.00 0.00 37.81 4.45
104 105 2.442830 GGCTTTGATCCCCCTGGC 60.443 66.667 0.00 0.00 0.00 4.85
105 106 2.830370 GCTTTGATCCCCCTGGCG 60.830 66.667 0.00 0.00 0.00 5.69
106 107 2.677228 CTTTGATCCCCCTGGCGT 59.323 61.111 0.00 0.00 0.00 5.68
107 108 1.452108 CTTTGATCCCCCTGGCGTC 60.452 63.158 0.00 0.00 0.00 5.19
108 109 3.323758 TTTGATCCCCCTGGCGTCG 62.324 63.158 0.00 0.00 0.00 5.12
162 163 6.101005 TGAGGGGTCAATTTTCCAAAAGAAAT 59.899 34.615 0.00 0.00 43.93 2.17
167 168 8.291740 GGGTCAATTTTCCAAAAGAAATGATTG 58.708 33.333 6.36 6.36 43.93 2.67
247 248 1.295357 CGGGTTACATTCACGCAGCA 61.295 55.000 0.00 0.00 0.00 4.41
256 257 2.730066 TTCACGCAGCAGCAGCCTTA 62.730 55.000 3.88 0.00 43.56 2.69
301 305 2.509336 CGACGGGGATGTGTGCTC 60.509 66.667 0.00 0.00 0.00 4.26
313 317 5.451798 GGGATGTGTGCTCAAAAGAAAAGAA 60.452 40.000 0.00 0.00 0.00 2.52
314 318 5.689068 GGATGTGTGCTCAAAAGAAAAGAAG 59.311 40.000 0.00 0.00 0.00 2.85
315 319 5.895636 TGTGTGCTCAAAAGAAAAGAAGA 57.104 34.783 0.00 0.00 0.00 2.87
316 320 6.266168 TGTGTGCTCAAAAGAAAAGAAGAA 57.734 33.333 0.00 0.00 0.00 2.52
317 321 6.324819 TGTGTGCTCAAAAGAAAAGAAGAAG 58.675 36.000 0.00 0.00 0.00 2.85
318 322 6.150976 TGTGTGCTCAAAAGAAAAGAAGAAGA 59.849 34.615 0.00 0.00 0.00 2.87
319 323 7.029563 GTGTGCTCAAAAGAAAAGAAGAAGAA 58.970 34.615 0.00 0.00 0.00 2.52
320 324 7.219726 GTGTGCTCAAAAGAAAAGAAGAAGAAG 59.780 37.037 0.00 0.00 0.00 2.85
356 362 2.138320 GGATACATCACATGCGGTCAG 58.862 52.381 0.00 0.00 0.00 3.51
359 365 1.896220 ACATCACATGCGGTCAGTTT 58.104 45.000 0.00 0.00 0.00 2.66
361 367 1.078709 ATCACATGCGGTCAGTTTCG 58.921 50.000 0.00 0.00 0.00 3.46
373 379 4.944249 GTTTCGCAAACTCCTGCC 57.056 55.556 5.00 0.00 39.26 4.85
374 380 1.082104 GTTTCGCAAACTCCTGCCG 60.082 57.895 5.00 0.00 39.26 5.69
388 394 4.162690 GCCGTCCTGCGATTCCCT 62.163 66.667 0.00 0.00 44.77 4.20
389 395 2.202932 CCGTCCTGCGATTCCCTG 60.203 66.667 0.00 0.00 44.77 4.45
453 459 2.809299 GCAAAAGAGTTACGTGGAGGGT 60.809 50.000 0.00 0.00 0.00 4.34
474 480 0.890683 CTCCATCAAACAACAGCCCC 59.109 55.000 0.00 0.00 0.00 5.80
579 586 0.229500 GCGCGCTTTTGAGTTTTTGG 59.771 50.000 26.67 0.00 0.00 3.28
695 704 2.359230 AAGCAAGGCAGGAGCGTC 60.359 61.111 0.00 0.00 43.41 5.19
701 710 2.125350 GGCAGGAGCGTCTTCTGG 60.125 66.667 14.47 0.86 37.56 3.86
764 773 4.966965 AGTAGTTCGAACGATCTGACAT 57.033 40.909 21.87 4.50 0.00 3.06
797 806 2.355956 GGATCGAATCGGACGGCC 60.356 66.667 0.00 0.00 0.00 6.13
840 849 4.530946 ACTTCGATTTCCCTACTTCTTCCA 59.469 41.667 0.00 0.00 0.00 3.53
843 852 3.197983 CGATTTCCCTACTTCTTCCACCT 59.802 47.826 0.00 0.00 0.00 4.00
844 853 4.680975 CGATTTCCCTACTTCTTCCACCTC 60.681 50.000 0.00 0.00 0.00 3.85
860 901 0.726827 CCTCATTTGCACACGCGTAT 59.273 50.000 13.44 0.00 42.97 3.06
867 908 1.225637 GCACACGCGTATGAAACCG 60.226 57.895 23.78 4.32 0.00 4.44
876 917 2.416972 GCGTATGAAACCGAACCTCTCT 60.417 50.000 0.00 0.00 0.00 3.10
877 918 3.846360 CGTATGAAACCGAACCTCTCTT 58.154 45.455 0.00 0.00 0.00 2.85
881 943 3.728845 TGAAACCGAACCTCTCTTCTTG 58.271 45.455 0.00 0.00 0.00 3.02
912 978 0.041833 CACCTCTCTCCTCTTCCCCA 59.958 60.000 0.00 0.00 0.00 4.96
950 1016 2.368875 CCGTCCCTGTCCATTTATAGCT 59.631 50.000 0.00 0.00 0.00 3.32
985 1051 2.955881 GCGCCCAAGGGAGTGTACT 61.956 63.158 9.92 0.00 37.40 2.73
1017 1083 3.474570 ATGGCGGCTGGTCTCTCC 61.475 66.667 11.43 0.00 0.00 3.71
1026 1092 2.363147 GGTCTCTCCGGCTCCACT 60.363 66.667 0.00 0.00 0.00 4.00
1389 1455 2.703798 CGCCTGGCAAATGGAGGTG 61.704 63.158 20.29 0.00 0.00 4.00
1404 1501 1.376683 GGTGCGTACCAGCCATTCA 60.377 57.895 18.66 0.00 46.71 2.57
1471 1568 2.102161 GCCATTTTAGTGCGCGGG 59.898 61.111 8.83 0.00 0.00 6.13
1490 1587 1.528309 CGGTTGGGCTTGACTGGTT 60.528 57.895 0.00 0.00 0.00 3.67
1496 1593 2.617274 GGCTTGACTGGTTGCCGTC 61.617 63.158 0.00 0.00 35.79 4.79
1930 2117 0.038159 CCGAACCACAGTGTCTCTCC 60.038 60.000 0.00 0.00 0.00 3.71
1933 2120 0.469331 AACCACAGTGTCTCTCCGGA 60.469 55.000 2.93 2.93 0.00 5.14
1987 2245 0.450583 GATCTGACTCGCCACGTGTA 59.549 55.000 15.65 0.00 33.78 2.90
2194 2459 2.627699 GCCAACTTGGTGATTTCCTGAA 59.372 45.455 9.63 0.00 40.46 3.02
2372 2650 1.526917 ACTGGCCAAGTGACACAGC 60.527 57.895 7.01 7.50 37.88 4.40
2472 2750 2.029964 GTTGGTGGCCTCGACGAA 59.970 61.111 3.32 0.00 0.00 3.85
2594 2872 8.481314 TCTAGCAGATGAACTACATTTCAAGAT 58.519 33.333 0.00 0.00 38.95 2.40
2725 3007 4.715130 TACTCGGCTGCAGGGGGT 62.715 66.667 17.12 5.48 0.00 4.95
2824 3111 3.125573 TCTCTCTCACCGCGTCCG 61.126 66.667 4.92 0.00 0.00 4.79
2913 3200 8.053026 TCTGTGTATAACAAGTAGAGAAGGTC 57.947 38.462 0.00 0.00 38.67 3.85
2972 3259 4.617808 CAAGAATGCTGGAGATTCAGTG 57.382 45.455 0.00 0.00 37.12 3.66
3000 3287 3.498481 CCATGTTTCCTCCTTTCTCCACA 60.498 47.826 0.00 0.00 0.00 4.17
3036 3358 6.710295 TCACACTATTGTTGTTGCTACTCATT 59.290 34.615 0.00 0.00 31.66 2.57
3038 3360 6.486657 ACACTATTGTTGTTGCTACTCATTGT 59.513 34.615 0.00 0.00 28.43 2.71
3065 3431 6.260936 TCTCTTCCAACTCTGTTGATTTTGAC 59.739 38.462 11.47 0.00 0.00 3.18
3068 3434 4.272504 TCCAACTCTGTTGATTTTGACGAC 59.727 41.667 11.47 0.00 0.00 4.34
3071 3437 5.156804 ACTCTGTTGATTTTGACGACAAC 57.843 39.130 0.00 0.00 41.64 3.32
3118 3496 1.759299 AGCCCATTCGCCATTGCAT 60.759 52.632 0.00 0.00 37.32 3.96
3127 3505 3.316071 TCGCCATTGCATTCACAATTT 57.684 38.095 0.00 0.00 38.19 1.82
3132 3510 7.038048 TCGCCATTGCATTCACAATTTATAAA 58.962 30.769 0.00 0.00 38.19 1.40
3136 3514 8.933807 CCATTGCATTCACAATTTATAAACACA 58.066 29.630 0.00 0.00 38.19 3.72
3139 3517 9.702494 TTGCATTCACAATTTATAAACACATCA 57.298 25.926 0.00 0.00 0.00 3.07
3140 3518 9.702494 TGCATTCACAATTTATAAACACATCAA 57.298 25.926 0.00 0.00 0.00 2.57
3145 3523 9.853555 TCACAATTTATAAACACATCAATGGTC 57.146 29.630 0.00 0.00 0.00 4.02
3146 3524 8.797215 CACAATTTATAAACACATCAATGGTCG 58.203 33.333 0.00 0.00 0.00 4.79
3147 3525 7.973388 ACAATTTATAAACACATCAATGGTCGG 59.027 33.333 0.00 0.00 0.00 4.79
3148 3526 7.639113 ATTTATAAACACATCAATGGTCGGT 57.361 32.000 0.00 0.00 0.00 4.69
3149 3527 6.671614 TTATAAACACATCAATGGTCGGTC 57.328 37.500 0.00 0.00 0.00 4.79
3150 3528 2.559698 AACACATCAATGGTCGGTCA 57.440 45.000 0.00 0.00 0.00 4.02
3151 3529 2.099141 ACACATCAATGGTCGGTCAG 57.901 50.000 0.00 0.00 0.00 3.51
3152 3530 1.339055 ACACATCAATGGTCGGTCAGG 60.339 52.381 0.00 0.00 0.00 3.86
3153 3531 0.392998 ACATCAATGGTCGGTCAGGC 60.393 55.000 0.00 0.00 0.00 4.85
3159 3537 2.990479 GGTCGGTCAGGCCTTCAT 59.010 61.111 0.00 0.00 42.70 2.57
3160 3538 2.208527 GGTCGGTCAGGCCTTCATA 58.791 57.895 0.00 0.00 42.70 2.15
3161 3539 0.539986 GGTCGGTCAGGCCTTCATAA 59.460 55.000 0.00 0.00 42.70 1.90
3162 3540 1.141053 GGTCGGTCAGGCCTTCATAAT 59.859 52.381 0.00 0.00 42.70 1.28
3163 3541 2.421529 GGTCGGTCAGGCCTTCATAATT 60.422 50.000 0.00 0.00 42.70 1.40
3164 3542 3.181458 GGTCGGTCAGGCCTTCATAATTA 60.181 47.826 0.00 0.00 42.70 1.40
3165 3543 4.448210 GTCGGTCAGGCCTTCATAATTAA 58.552 43.478 0.00 0.00 34.25 1.40
3166 3544 4.511826 GTCGGTCAGGCCTTCATAATTAAG 59.488 45.833 0.00 0.00 34.25 1.85
3167 3545 3.815401 CGGTCAGGCCTTCATAATTAAGG 59.185 47.826 0.00 1.64 45.36 2.69
3168 3546 4.145052 GGTCAGGCCTTCATAATTAAGGG 58.855 47.826 0.00 0.00 43.21 3.95
3169 3547 4.141251 GGTCAGGCCTTCATAATTAAGGGA 60.141 45.833 0.00 0.00 43.21 4.20
3170 3548 5.458215 GGTCAGGCCTTCATAATTAAGGGAT 60.458 44.000 0.00 0.00 43.21 3.85
3171 3549 6.240176 GGTCAGGCCTTCATAATTAAGGGATA 60.240 42.308 0.00 0.00 43.21 2.59
3172 3550 7.231467 GTCAGGCCTTCATAATTAAGGGATAA 58.769 38.462 0.00 0.00 43.21 1.75
3173 3551 7.890655 GTCAGGCCTTCATAATTAAGGGATAAT 59.109 37.037 0.00 0.00 43.21 1.28
3174 3552 8.456124 TCAGGCCTTCATAATTAAGGGATAATT 58.544 33.333 0.00 0.00 44.48 1.40
3175 3553 9.753674 CAGGCCTTCATAATTAAGGGATAATTA 57.246 33.333 0.00 3.83 45.73 1.40
3227 3605 6.990908 AAAGGAGTTAACTACACTACAGGT 57.009 37.500 20.07 0.00 0.00 4.00
3236 3614 2.596776 CACTACAGGTGCCCTAGCT 58.403 57.895 0.00 0.00 39.22 3.32
3237 3615 0.905357 CACTACAGGTGCCCTAGCTT 59.095 55.000 0.00 0.00 39.22 3.74
3238 3616 2.108168 CACTACAGGTGCCCTAGCTTA 58.892 52.381 0.00 0.00 39.22 3.09
3239 3617 2.700897 CACTACAGGTGCCCTAGCTTAT 59.299 50.000 0.00 0.00 39.22 1.73
3240 3618 2.966516 ACTACAGGTGCCCTAGCTTATC 59.033 50.000 0.00 0.00 40.80 1.75
3241 3619 1.132500 ACAGGTGCCCTAGCTTATCC 58.868 55.000 0.00 0.00 40.80 2.59
3242 3620 0.034059 CAGGTGCCCTAGCTTATCCG 59.966 60.000 0.00 0.00 40.80 4.18
3243 3621 1.122019 AGGTGCCCTAGCTTATCCGG 61.122 60.000 0.00 0.00 40.80 5.14
3244 3622 1.408453 GGTGCCCTAGCTTATCCGGT 61.408 60.000 0.00 0.00 40.80 5.28
3245 3623 0.249911 GTGCCCTAGCTTATCCGGTG 60.250 60.000 0.00 0.00 40.80 4.94
3246 3624 1.301795 GCCCTAGCTTATCCGGTGC 60.302 63.158 0.00 2.15 35.50 5.01
3247 3625 1.006102 CCCTAGCTTATCCGGTGCG 60.006 63.158 0.00 0.00 0.00 5.34
3257 3635 3.353836 CCGGTGCGGTCAGTTTGG 61.354 66.667 0.00 0.00 42.73 3.28
3258 3636 2.590575 CGGTGCGGTCAGTTTGGT 60.591 61.111 0.00 0.00 0.00 3.67
3259 3637 2.892334 CGGTGCGGTCAGTTTGGTG 61.892 63.158 0.00 0.00 0.00 4.17
3260 3638 2.331451 GTGCGGTCAGTTTGGTGC 59.669 61.111 0.00 0.00 0.00 5.01
3261 3639 2.904866 TGCGGTCAGTTTGGTGCC 60.905 61.111 0.00 0.00 0.00 5.01
3262 3640 2.594592 GCGGTCAGTTTGGTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
3263 3641 1.302192 GCGGTCAGTTTGGTGCCTA 60.302 57.895 0.00 0.00 0.00 3.93
3264 3642 0.887387 GCGGTCAGTTTGGTGCCTAA 60.887 55.000 0.00 0.00 0.00 2.69
3265 3643 1.600023 CGGTCAGTTTGGTGCCTAAA 58.400 50.000 0.00 0.00 0.00 1.85
3266 3644 1.265905 CGGTCAGTTTGGTGCCTAAAC 59.734 52.381 6.19 6.19 38.09 2.01
3267 3645 2.583143 GGTCAGTTTGGTGCCTAAACT 58.417 47.619 9.73 9.73 46.23 2.66
3268 3646 2.956333 GGTCAGTTTGGTGCCTAAACTT 59.044 45.455 11.95 0.00 43.71 2.66
3269 3647 3.243401 GGTCAGTTTGGTGCCTAAACTTG 60.243 47.826 11.95 9.11 43.71 3.16
3270 3648 3.630312 GTCAGTTTGGTGCCTAAACTTGA 59.370 43.478 11.95 10.61 43.71 3.02
3271 3649 4.097286 GTCAGTTTGGTGCCTAAACTTGAA 59.903 41.667 11.95 2.27 43.71 2.69
3272 3650 4.707448 TCAGTTTGGTGCCTAAACTTGAAA 59.293 37.500 11.95 0.48 43.71 2.69
3273 3651 5.186021 TCAGTTTGGTGCCTAAACTTGAAAA 59.814 36.000 11.95 0.00 43.71 2.29
3274 3652 5.872070 CAGTTTGGTGCCTAAACTTGAAAAA 59.128 36.000 11.95 0.00 43.71 1.94
3275 3653 6.538381 CAGTTTGGTGCCTAAACTTGAAAAAT 59.462 34.615 11.95 0.00 43.71 1.82
3276 3654 7.708752 CAGTTTGGTGCCTAAACTTGAAAAATA 59.291 33.333 11.95 0.00 43.71 1.40
3277 3655 7.709182 AGTTTGGTGCCTAAACTTGAAAAATAC 59.291 33.333 9.73 0.00 43.71 1.89
3278 3656 6.716934 TGGTGCCTAAACTTGAAAAATACA 57.283 33.333 0.00 0.00 0.00 2.29
3279 3657 6.508777 TGGTGCCTAAACTTGAAAAATACAC 58.491 36.000 0.00 0.00 0.00 2.90
3280 3658 6.096987 TGGTGCCTAAACTTGAAAAATACACA 59.903 34.615 0.00 0.00 0.00 3.72
3281 3659 6.981559 GGTGCCTAAACTTGAAAAATACACAA 59.018 34.615 0.00 0.00 0.00 3.33
3282 3660 7.492994 GGTGCCTAAACTTGAAAAATACACAAA 59.507 33.333 0.00 0.00 0.00 2.83
3283 3661 8.874816 GTGCCTAAACTTGAAAAATACACAAAA 58.125 29.630 0.00 0.00 0.00 2.44
3284 3662 9.092876 TGCCTAAACTTGAAAAATACACAAAAG 57.907 29.630 0.00 0.00 0.00 2.27
3285 3663 9.093970 GCCTAAACTTGAAAAATACACAAAAGT 57.906 29.630 0.00 0.00 0.00 2.66
3290 3668 9.651913 AACTTGAAAAATACACAAAAGTGATGT 57.348 25.926 2.22 0.00 0.00 3.06
3291 3669 9.301153 ACTTGAAAAATACACAAAAGTGATGTC 57.699 29.630 2.22 0.00 0.00 3.06
3292 3670 7.906611 TGAAAAATACACAAAAGTGATGTCG 57.093 32.000 2.22 0.00 0.00 4.35
3293 3671 7.476667 TGAAAAATACACAAAAGTGATGTCGT 58.523 30.769 2.22 0.00 0.00 4.34
3294 3672 8.613482 TGAAAAATACACAAAAGTGATGTCGTA 58.387 29.630 2.22 0.00 0.00 3.43
3295 3673 9.440784 GAAAAATACACAAAAGTGATGTCGTAA 57.559 29.630 2.22 0.00 0.00 3.18
3296 3674 8.776680 AAAATACACAAAAGTGATGTCGTAAC 57.223 30.769 2.22 0.00 0.00 2.50
3297 3675 7.724305 AATACACAAAAGTGATGTCGTAACT 57.276 32.000 2.22 0.00 0.00 2.24
3298 3676 7.724305 ATACACAAAAGTGATGTCGTAACTT 57.276 32.000 2.22 0.00 35.70 2.66
3299 3677 5.806286 ACACAAAAGTGATGTCGTAACTTG 58.194 37.500 2.22 0.00 34.46 3.16
3300 3678 5.353123 ACACAAAAGTGATGTCGTAACTTGT 59.647 36.000 2.22 0.00 34.46 3.16
3301 3679 5.901884 CACAAAAGTGATGTCGTAACTTGTC 59.098 40.000 0.00 0.00 34.46 3.18
3302 3680 5.815740 ACAAAAGTGATGTCGTAACTTGTCT 59.184 36.000 0.00 0.00 34.46 3.41
3303 3681 5.907197 AAAGTGATGTCGTAACTTGTCTG 57.093 39.130 0.00 0.00 34.46 3.51
3304 3682 3.914312 AGTGATGTCGTAACTTGTCTGG 58.086 45.455 0.00 0.00 0.00 3.86
3305 3683 2.993899 GTGATGTCGTAACTTGTCTGGG 59.006 50.000 0.00 0.00 0.00 4.45
3306 3684 2.000447 GATGTCGTAACTTGTCTGGGC 59.000 52.381 0.00 0.00 0.00 5.36
3307 3685 0.319211 TGTCGTAACTTGTCTGGGCG 60.319 55.000 0.00 0.00 0.00 6.13
3308 3686 0.319297 GTCGTAACTTGTCTGGGCGT 60.319 55.000 0.00 0.00 0.00 5.68
3309 3687 0.390124 TCGTAACTTGTCTGGGCGTT 59.610 50.000 0.00 0.00 0.00 4.84
3310 3688 0.788391 CGTAACTTGTCTGGGCGTTC 59.212 55.000 0.00 0.00 0.00 3.95
3311 3689 1.870580 CGTAACTTGTCTGGGCGTTCA 60.871 52.381 0.00 0.00 0.00 3.18
3312 3690 2.215196 GTAACTTGTCTGGGCGTTCAA 58.785 47.619 0.00 0.00 0.00 2.69
3313 3691 1.757682 AACTTGTCTGGGCGTTCAAA 58.242 45.000 0.00 0.00 0.00 2.69
3314 3692 1.981256 ACTTGTCTGGGCGTTCAAAT 58.019 45.000 0.00 0.00 0.00 2.32
3315 3693 3.134574 ACTTGTCTGGGCGTTCAAATA 57.865 42.857 0.00 0.00 0.00 1.40
3316 3694 2.812011 ACTTGTCTGGGCGTTCAAATAC 59.188 45.455 0.00 0.00 0.00 1.89
3317 3695 1.434555 TGTCTGGGCGTTCAAATACG 58.565 50.000 0.00 0.00 44.09 3.06
3318 3696 0.725117 GTCTGGGCGTTCAAATACGG 59.275 55.000 0.00 0.00 41.65 4.02
3319 3697 0.322322 TCTGGGCGTTCAAATACGGT 59.678 50.000 0.00 0.00 41.65 4.83
3320 3698 0.446222 CTGGGCGTTCAAATACGGTG 59.554 55.000 0.00 0.00 41.65 4.94
3321 3699 1.135939 GGGCGTTCAAATACGGTGC 59.864 57.895 0.00 0.00 41.65 5.01
3322 3700 1.135939 GGCGTTCAAATACGGTGCC 59.864 57.895 0.00 0.00 41.65 5.01
3323 3701 1.303091 GGCGTTCAAATACGGTGCCT 61.303 55.000 0.00 0.00 41.65 4.75
3324 3702 0.096454 GCGTTCAAATACGGTGCCTC 59.904 55.000 0.00 0.00 41.65 4.70
3325 3703 1.722011 CGTTCAAATACGGTGCCTCT 58.278 50.000 0.00 0.00 37.86 3.69
3326 3704 2.883574 CGTTCAAATACGGTGCCTCTA 58.116 47.619 0.00 0.00 37.86 2.43
3327 3705 2.858344 CGTTCAAATACGGTGCCTCTAG 59.142 50.000 0.00 0.00 37.86 2.43
3328 3706 3.428452 CGTTCAAATACGGTGCCTCTAGA 60.428 47.826 0.00 0.00 37.86 2.43
3329 3707 3.795623 TCAAATACGGTGCCTCTAGAC 57.204 47.619 0.00 0.00 0.00 2.59
3330 3708 2.098607 TCAAATACGGTGCCTCTAGACG 59.901 50.000 0.00 0.00 0.00 4.18
3331 3709 1.760192 AATACGGTGCCTCTAGACGT 58.240 50.000 9.84 9.84 41.10 4.34
3332 3710 2.627515 ATACGGTGCCTCTAGACGTA 57.372 50.000 13.03 13.03 43.05 3.57
3333 3711 2.627515 TACGGTGCCTCTAGACGTAT 57.372 50.000 8.09 0.00 38.79 3.06
3334 3712 1.022735 ACGGTGCCTCTAGACGTATG 58.977 55.000 3.74 0.00 35.85 2.39
3335 3713 0.317938 CGGTGCCTCTAGACGTATGC 60.318 60.000 0.00 0.00 0.00 3.14
3336 3714 0.032267 GGTGCCTCTAGACGTATGCC 59.968 60.000 0.00 0.00 0.00 4.40
3337 3715 0.317938 GTGCCTCTAGACGTATGCCG 60.318 60.000 0.00 0.00 44.03 5.69
3338 3716 1.371881 GCCTCTAGACGTATGCCGC 60.372 63.158 0.00 0.00 41.42 6.53
3339 3717 1.286260 CCTCTAGACGTATGCCGCC 59.714 63.158 0.00 0.00 41.42 6.13
3340 3718 1.082038 CTCTAGACGTATGCCGCCG 60.082 63.158 0.00 0.00 41.42 6.46
3341 3719 1.783031 CTCTAGACGTATGCCGCCGT 61.783 60.000 0.00 0.00 41.42 5.68
3342 3720 0.532640 TCTAGACGTATGCCGCCGTA 60.533 55.000 0.00 0.00 41.42 4.02
3343 3721 0.520404 CTAGACGTATGCCGCCGTAT 59.480 55.000 0.00 0.00 41.42 3.06
3344 3722 0.518636 TAGACGTATGCCGCCGTATC 59.481 55.000 0.00 0.00 41.42 2.24
3345 3723 2.050714 ACGTATGCCGCCGTATCG 60.051 61.111 0.00 0.00 41.42 2.92
3346 3724 2.253154 CGTATGCCGCCGTATCGA 59.747 61.111 0.00 0.00 0.00 3.59
3347 3725 1.796355 CGTATGCCGCCGTATCGAG 60.796 63.158 0.00 0.00 0.00 4.04
3348 3726 1.285023 GTATGCCGCCGTATCGAGT 59.715 57.895 0.00 0.00 0.00 4.18
3349 3727 1.002250 GTATGCCGCCGTATCGAGTG 61.002 60.000 0.00 0.00 0.00 3.51
3350 3728 2.742710 TATGCCGCCGTATCGAGTGC 62.743 60.000 0.00 0.00 0.00 4.40
3352 3730 4.944372 CCGCCGTATCGAGTGCCC 62.944 72.222 0.00 0.00 0.00 5.36
3356 3734 4.547905 CGTATCGAGTGCCCGCGT 62.548 66.667 4.92 0.00 35.24 6.01
3357 3735 2.954868 GTATCGAGTGCCCGCGTG 60.955 66.667 4.92 0.00 35.24 5.34
3358 3736 4.201679 TATCGAGTGCCCGCGTGG 62.202 66.667 8.42 8.42 35.24 4.94
3368 3746 3.499737 CCGCGTGGCATTCCAGTC 61.500 66.667 0.00 0.00 44.48 3.51
3369 3747 2.434884 CGCGTGGCATTCCAGTCT 60.435 61.111 0.00 0.00 44.48 3.24
3370 3748 2.743752 CGCGTGGCATTCCAGTCTG 61.744 63.158 0.00 0.00 44.48 3.51
3371 3749 1.672356 GCGTGGCATTCCAGTCTGT 60.672 57.895 0.00 0.00 44.48 3.41
3372 3750 1.639298 GCGTGGCATTCCAGTCTGTC 61.639 60.000 0.00 0.00 44.48 3.51
3373 3751 1.354337 CGTGGCATTCCAGTCTGTCG 61.354 60.000 0.00 0.00 44.48 4.35
3374 3752 1.375908 TGGCATTCCAGTCTGTCGC 60.376 57.895 0.00 0.00 37.47 5.19
3375 3753 1.078848 GGCATTCCAGTCTGTCGCT 60.079 57.895 0.00 0.00 0.00 4.93
3376 3754 0.175760 GGCATTCCAGTCTGTCGCTA 59.824 55.000 0.00 0.00 0.00 4.26
3377 3755 1.565305 GCATTCCAGTCTGTCGCTAG 58.435 55.000 0.00 0.00 0.00 3.42
3378 3756 1.804372 GCATTCCAGTCTGTCGCTAGG 60.804 57.143 0.00 0.00 0.00 3.02
3379 3757 0.461961 ATTCCAGTCTGTCGCTAGGC 59.538 55.000 0.00 0.00 0.00 3.93
3380 3758 1.605058 TTCCAGTCTGTCGCTAGGCC 61.605 60.000 0.00 0.00 0.00 5.19
3381 3759 2.351244 CCAGTCTGTCGCTAGGCCA 61.351 63.158 5.01 0.00 0.00 5.36
3382 3760 1.153745 CAGTCTGTCGCTAGGCCAC 60.154 63.158 5.01 0.00 0.00 5.01
3383 3761 1.606601 AGTCTGTCGCTAGGCCACA 60.607 57.895 5.01 0.00 0.00 4.17
3384 3762 0.972983 AGTCTGTCGCTAGGCCACAT 60.973 55.000 5.01 0.00 0.00 3.21
3385 3763 0.807667 GTCTGTCGCTAGGCCACATG 60.808 60.000 5.01 0.00 0.00 3.21
3386 3764 1.219124 CTGTCGCTAGGCCACATGT 59.781 57.895 5.01 0.00 0.00 3.21
3387 3765 0.807667 CTGTCGCTAGGCCACATGTC 60.808 60.000 5.01 0.00 0.00 3.06
3388 3766 1.218047 GTCGCTAGGCCACATGTCA 59.782 57.895 5.01 0.00 0.00 3.58
3389 3767 0.807667 GTCGCTAGGCCACATGTCAG 60.808 60.000 5.01 0.00 0.00 3.51
3390 3768 2.176273 CGCTAGGCCACATGTCAGC 61.176 63.158 5.01 8.58 0.00 4.26
3391 3769 2.176273 GCTAGGCCACATGTCAGCG 61.176 63.158 5.01 0.30 0.00 5.18
3392 3770 1.522355 CTAGGCCACATGTCAGCGG 60.522 63.158 5.01 3.73 0.00 5.52
3393 3771 2.244117 CTAGGCCACATGTCAGCGGT 62.244 60.000 5.01 4.34 0.00 5.68
3394 3772 1.836999 TAGGCCACATGTCAGCGGTT 61.837 55.000 5.01 3.19 0.00 4.44
3395 3773 2.562912 GCCACATGTCAGCGGTTG 59.437 61.111 0.00 0.00 0.00 3.77
3396 3774 2.562912 CCACATGTCAGCGGTTGC 59.437 61.111 0.00 0.00 43.24 4.17
3397 3775 2.562912 CACATGTCAGCGGTTGCC 59.437 61.111 0.00 0.00 44.31 4.52
3398 3776 1.968017 CACATGTCAGCGGTTGCCT 60.968 57.895 0.00 0.00 44.31 4.75
3399 3777 0.673333 CACATGTCAGCGGTTGCCTA 60.673 55.000 0.00 0.00 44.31 3.93
3400 3778 0.673644 ACATGTCAGCGGTTGCCTAC 60.674 55.000 0.00 0.00 44.31 3.18
3401 3779 1.447838 ATGTCAGCGGTTGCCTACG 60.448 57.895 0.00 0.00 44.31 3.51
3408 3786 4.439472 GGTTGCCTACGCGCGTTG 62.439 66.667 42.10 36.67 38.08 4.10
3409 3787 3.708734 GTTGCCTACGCGCGTTGT 61.709 61.111 42.10 19.68 38.08 3.32
3410 3788 3.707700 TTGCCTACGCGCGTTGTG 61.708 61.111 42.10 29.43 38.08 3.33
3411 3789 4.649310 TGCCTACGCGCGTTGTGA 62.649 61.111 42.10 22.42 38.08 3.58
3412 3790 3.838795 GCCTACGCGCGTTGTGAG 61.839 66.667 42.10 30.14 0.00 3.51
3413 3791 3.838795 CCTACGCGCGTTGTGAGC 61.839 66.667 42.10 0.00 40.38 4.26
3414 3792 2.805353 CTACGCGCGTTGTGAGCT 60.805 61.111 42.10 16.26 41.79 4.09
3415 3793 1.513373 CTACGCGCGTTGTGAGCTA 60.513 57.895 42.10 19.51 41.79 3.32
3416 3794 0.866061 CTACGCGCGTTGTGAGCTAT 60.866 55.000 42.10 14.58 41.79 2.97
3417 3795 1.137459 TACGCGCGTTGTGAGCTATG 61.137 55.000 42.10 4.36 41.79 2.23
3418 3796 2.021931 GCGCGTTGTGAGCTATGC 59.978 61.111 8.43 0.00 40.64 3.14
3419 3797 2.739704 GCGCGTTGTGAGCTATGCA 61.740 57.895 8.43 0.00 40.64 3.96
3420 3798 2.009108 CGCGTTGTGAGCTATGCAT 58.991 52.632 3.79 3.79 33.11 3.96
3421 3799 0.315625 CGCGTTGTGAGCTATGCATG 60.316 55.000 10.16 0.26 33.11 4.06
3422 3800 0.729116 GCGTTGTGAGCTATGCATGT 59.271 50.000 10.16 0.00 33.61 3.21
3423 3801 1.131126 GCGTTGTGAGCTATGCATGTT 59.869 47.619 10.16 0.00 33.61 2.71
3424 3802 2.777494 CGTTGTGAGCTATGCATGTTG 58.223 47.619 10.16 0.43 0.00 3.33
3425 3803 2.160219 CGTTGTGAGCTATGCATGTTGT 59.840 45.455 10.16 0.00 0.00 3.32
3426 3804 3.365264 CGTTGTGAGCTATGCATGTTGTT 60.365 43.478 10.16 0.00 0.00 2.83
3427 3805 4.549458 GTTGTGAGCTATGCATGTTGTTT 58.451 39.130 10.16 0.00 0.00 2.83
3428 3806 4.852134 TGTGAGCTATGCATGTTGTTTT 57.148 36.364 10.16 0.00 0.00 2.43
3429 3807 5.199024 TGTGAGCTATGCATGTTGTTTTT 57.801 34.783 10.16 0.00 0.00 1.94
3453 3831 3.774842 AGGAATGCCCCTGGATTTTAA 57.225 42.857 0.00 0.00 34.68 1.52
3454 3832 4.285304 AGGAATGCCCCTGGATTTTAAT 57.715 40.909 0.00 0.00 34.68 1.40
3455 3833 4.634411 AGGAATGCCCCTGGATTTTAATT 58.366 39.130 0.00 0.00 34.68 1.40
3456 3834 5.787327 AGGAATGCCCCTGGATTTTAATTA 58.213 37.500 0.00 0.00 34.68 1.40
3457 3835 6.209026 AGGAATGCCCCTGGATTTTAATTAA 58.791 36.000 0.00 0.00 34.68 1.40
3458 3836 6.851300 AGGAATGCCCCTGGATTTTAATTAAT 59.149 34.615 0.00 0.00 34.68 1.40
3459 3837 7.350655 AGGAATGCCCCTGGATTTTAATTAATT 59.649 33.333 5.89 5.89 34.68 1.40
3460 3838 7.998383 GGAATGCCCCTGGATTTTAATTAATTT 59.002 33.333 5.91 0.00 0.00 1.82
3461 3839 9.407380 GAATGCCCCTGGATTTTAATTAATTTT 57.593 29.630 5.91 0.00 0.00 1.82
3462 3840 8.978874 ATGCCCCTGGATTTTAATTAATTTTC 57.021 30.769 5.91 0.00 0.00 2.29
3463 3841 7.044798 TGCCCCTGGATTTTAATTAATTTTCG 58.955 34.615 5.91 0.00 0.00 3.46
3464 3842 6.018262 GCCCCTGGATTTTAATTAATTTTCGC 60.018 38.462 5.91 0.00 0.00 4.70
3465 3843 7.044798 CCCCTGGATTTTAATTAATTTTCGCA 58.955 34.615 5.91 0.64 0.00 5.10
3466 3844 7.550906 CCCCTGGATTTTAATTAATTTTCGCAA 59.449 33.333 5.91 0.00 0.00 4.85
3467 3845 8.940952 CCCTGGATTTTAATTAATTTTCGCAAA 58.059 29.630 5.91 0.00 0.00 3.68
3508 3886 3.339731 TTTTTGCGGGAGTCAGCG 58.660 55.556 5.54 0.00 35.87 5.18
3509 3887 1.525077 TTTTTGCGGGAGTCAGCGT 60.525 52.632 5.54 0.00 35.87 5.07
3510 3888 0.249953 TTTTTGCGGGAGTCAGCGTA 60.250 50.000 5.54 0.00 35.87 4.42
3511 3889 0.947180 TTTTGCGGGAGTCAGCGTAC 60.947 55.000 5.54 0.00 35.87 3.67
3512 3890 2.089887 TTTGCGGGAGTCAGCGTACA 62.090 55.000 5.54 0.00 35.87 2.90
3513 3891 2.202623 GCGGGAGTCAGCGTACAG 60.203 66.667 0.00 0.00 0.00 2.74
3514 3892 2.490217 CGGGAGTCAGCGTACAGG 59.510 66.667 0.00 0.00 0.00 4.00
3515 3893 2.893398 GGGAGTCAGCGTACAGGG 59.107 66.667 0.00 0.00 0.00 4.45
3516 3894 1.681327 GGGAGTCAGCGTACAGGGA 60.681 63.158 0.00 0.00 0.00 4.20
3517 3895 1.511768 GGAGTCAGCGTACAGGGAC 59.488 63.158 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.952628 AAGACCTTGCCGCCGCTAC 62.953 63.158 0.00 0.00 35.36 3.58
40 41 3.248446 AAAGACCTTGCCGCCGCTA 62.248 57.895 0.00 0.00 35.36 4.26
41 42 4.643387 AAAGACCTTGCCGCCGCT 62.643 61.111 0.00 0.00 35.36 5.52
42 43 4.103103 GAAAGACCTTGCCGCCGC 62.103 66.667 0.00 0.00 0.00 6.53
43 44 3.788766 CGAAAGACCTTGCCGCCG 61.789 66.667 0.00 0.00 0.00 6.46
44 45 2.258726 AACGAAAGACCTTGCCGCC 61.259 57.895 0.00 0.00 0.00 6.13
45 46 1.082104 CAACGAAAGACCTTGCCGC 60.082 57.895 0.00 0.00 0.00 6.53
46 47 0.041312 CACAACGAAAGACCTTGCCG 60.041 55.000 0.00 0.00 0.00 5.69
47 48 0.310854 CCACAACGAAAGACCTTGCC 59.689 55.000 0.00 0.00 0.00 4.52
48 49 0.310854 CCCACAACGAAAGACCTTGC 59.689 55.000 0.00 0.00 0.00 4.01
49 50 0.951558 CCCCACAACGAAAGACCTTG 59.048 55.000 0.00 0.00 0.00 3.61
50 51 0.549469 ACCCCACAACGAAAGACCTT 59.451 50.000 0.00 0.00 0.00 3.50
51 52 0.179029 CACCCCACAACGAAAGACCT 60.179 55.000 0.00 0.00 0.00 3.85
52 53 1.170290 CCACCCCACAACGAAAGACC 61.170 60.000 0.00 0.00 0.00 3.85
53 54 1.170290 CCCACCCCACAACGAAAGAC 61.170 60.000 0.00 0.00 0.00 3.01
54 55 1.149627 CCCACCCCACAACGAAAGA 59.850 57.895 0.00 0.00 0.00 2.52
55 56 1.901464 CCCCACCCCACAACGAAAG 60.901 63.158 0.00 0.00 0.00 2.62
56 57 2.196229 CCCCACCCCACAACGAAA 59.804 61.111 0.00 0.00 0.00 3.46
57 58 3.892162 CCCCCACCCCACAACGAA 61.892 66.667 0.00 0.00 0.00 3.85
79 80 3.508840 GATCAAAGCCCACCGCCG 61.509 66.667 0.00 0.00 38.78 6.46
80 81 3.140814 GGATCAAAGCCCACCGCC 61.141 66.667 0.00 0.00 38.78 6.13
81 82 3.140814 GGGATCAAAGCCCACCGC 61.141 66.667 0.00 0.00 45.31 5.68
86 87 2.280079 CCAGGGGGATCAAAGCCC 59.720 66.667 0.00 0.00 45.25 5.19
87 88 2.442830 GCCAGGGGGATCAAAGCC 60.443 66.667 0.00 0.00 35.59 4.35
88 89 2.830370 CGCCAGGGGGATCAAAGC 60.830 66.667 0.00 0.00 35.59 3.51
89 90 1.452108 GACGCCAGGGGGATCAAAG 60.452 63.158 8.67 0.00 35.59 2.77
90 91 2.674754 GACGCCAGGGGGATCAAA 59.325 61.111 8.67 0.00 35.59 2.69
91 92 3.781307 CGACGCCAGGGGGATCAA 61.781 66.667 8.67 0.00 35.59 2.57
121 122 4.394712 CACGACCCCCTCAGTGCC 62.395 72.222 0.00 0.00 0.00 5.01
122 123 3.302347 CTCACGACCCCCTCAGTGC 62.302 68.421 0.00 0.00 34.84 4.40
137 138 4.551671 TCTTTTGGAAAATTGACCCCTCA 58.448 39.130 0.00 0.00 0.00 3.86
179 180 3.107642 TGACACTCCTCTTTTTCCGTC 57.892 47.619 0.00 0.00 0.00 4.79
180 181 3.553828 TTGACACTCCTCTTTTTCCGT 57.446 42.857 0.00 0.00 0.00 4.69
181 182 4.320494 CCATTTGACACTCCTCTTTTTCCG 60.320 45.833 0.00 0.00 0.00 4.30
184 185 3.321968 GCCCATTTGACACTCCTCTTTTT 59.678 43.478 0.00 0.00 0.00 1.94
234 235 2.974489 GCTGCTGCTGCGTGAATGT 61.974 57.895 15.65 0.00 43.34 2.71
247 248 3.063997 CGATCGAACAAATTAAGGCTGCT 59.936 43.478 10.26 0.00 0.00 4.24
313 317 6.069206 TCCCCATCATGAGATTTTCTTCTTCT 60.069 38.462 0.09 0.00 30.20 2.85
314 318 6.125029 TCCCCATCATGAGATTTTCTTCTTC 58.875 40.000 0.09 0.00 30.20 2.87
315 319 6.083487 TCCCCATCATGAGATTTTCTTCTT 57.917 37.500 0.09 0.00 30.20 2.52
316 320 5.722172 TCCCCATCATGAGATTTTCTTCT 57.278 39.130 0.09 0.00 30.20 2.85
317 321 7.000472 TGTATCCCCATCATGAGATTTTCTTC 59.000 38.462 0.09 0.00 30.20 2.87
318 322 6.914665 TGTATCCCCATCATGAGATTTTCTT 58.085 36.000 0.09 0.00 30.20 2.52
319 323 6.520021 TGTATCCCCATCATGAGATTTTCT 57.480 37.500 0.09 0.00 30.20 2.52
320 324 6.944290 TGATGTATCCCCATCATGAGATTTTC 59.056 38.462 0.09 0.00 44.70 2.29
330 336 2.550639 CGCATGTGATGTATCCCCATCA 60.551 50.000 0.00 0.00 46.74 3.07
356 362 1.082104 CGGCAGGAGTTTGCGAAAC 60.082 57.895 0.00 0.00 45.00 2.78
359 365 2.357034 GACGGCAGGAGTTTGCGA 60.357 61.111 0.00 0.00 45.00 5.10
361 367 2.032681 AGGACGGCAGGAGTTTGC 59.967 61.111 0.00 0.00 43.34 3.68
367 373 3.371097 GAATCGCAGGACGGCAGGA 62.371 63.158 0.00 0.00 43.89 3.86
368 374 2.892425 GAATCGCAGGACGGCAGG 60.892 66.667 0.00 0.00 43.89 4.85
369 375 2.892425 GGAATCGCAGGACGGCAG 60.892 66.667 0.00 0.00 43.89 4.85
370 376 4.467084 GGGAATCGCAGGACGGCA 62.467 66.667 0.00 0.00 43.89 5.69
371 377 4.162690 AGGGAATCGCAGGACGGC 62.163 66.667 0.00 0.00 43.89 5.68
372 378 2.202932 CAGGGAATCGCAGGACGG 60.203 66.667 0.00 0.00 43.89 4.79
373 379 0.174845 TAACAGGGAATCGCAGGACG 59.825 55.000 0.00 0.00 45.62 4.79
374 380 2.396590 TTAACAGGGAATCGCAGGAC 57.603 50.000 0.00 0.00 0.00 3.85
388 394 3.339141 TGTACGCATCAGGCATTTAACA 58.661 40.909 0.00 0.00 45.17 2.41
389 395 4.095610 GTTGTACGCATCAGGCATTTAAC 58.904 43.478 0.00 0.00 45.17 2.01
453 459 2.238521 GGGCTGTTGTTTGATGGAGAA 58.761 47.619 0.00 0.00 0.00 2.87
459 465 0.110486 ACGAGGGGCTGTTGTTTGAT 59.890 50.000 0.00 0.00 0.00 2.57
508 514 3.658757 AGAAGCCGAGAATAGCAGATC 57.341 47.619 0.00 0.00 0.00 2.75
701 710 2.649129 GGGATTGTGTGGCCAAGGC 61.649 63.158 7.24 1.52 41.06 4.35
764 773 4.680237 CCAACTGCCGAGACCGCA 62.680 66.667 0.00 0.00 0.00 5.69
776 785 0.102481 CCGTCCGATTCGATCCAACT 59.898 55.000 7.83 0.00 0.00 3.16
840 849 0.601576 TACGCGTGTGCAAATGAGGT 60.602 50.000 24.59 0.00 42.97 3.85
843 852 1.433534 TCATACGCGTGTGCAAATGA 58.566 45.000 28.53 21.18 42.97 2.57
844 853 2.239751 TTCATACGCGTGTGCAAATG 57.760 45.000 28.53 19.29 42.97 2.32
860 901 3.728845 CAAGAAGAGAGGTTCGGTTTCA 58.271 45.455 0.00 0.00 0.00 2.69
867 908 3.584834 GACTCTGCAAGAAGAGAGGTTC 58.415 50.000 12.02 0.00 46.34 3.62
876 917 1.070758 GGTGACTGGACTCTGCAAGAA 59.929 52.381 3.37 0.00 46.34 2.52
877 918 0.681733 GGTGACTGGACTCTGCAAGA 59.318 55.000 3.37 0.00 43.69 3.02
881 943 0.530288 GAGAGGTGACTGGACTCTGC 59.470 60.000 0.00 0.00 44.43 4.26
950 1016 1.221466 CGCACTGCACTTTCTCGGAA 61.221 55.000 1.11 0.00 0.00 4.30
985 1051 1.383664 CCATGGAGGGAGGCTCTCA 60.384 63.158 18.31 9.65 33.18 3.27
1005 1071 3.844090 GAGCCGGAGAGACCAGCC 61.844 72.222 5.05 0.00 42.63 4.85
1257 1323 4.475135 GCCTTCCTCTCCGCCACC 62.475 72.222 0.00 0.00 0.00 4.61
1389 1455 2.791158 CGAAAATGAATGGCTGGTACGC 60.791 50.000 0.00 0.00 0.00 4.42
1404 1501 4.201822 GCAACGAGGAAAGATAGCGAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
1471 1568 3.365265 CCAGTCAAGCCCAACCGC 61.365 66.667 0.00 0.00 0.00 5.68
1490 1587 1.954146 GTCAGTTTCAGCGACGGCA 60.954 57.895 0.00 0.00 43.41 5.69
1496 1593 1.510623 GCGCATGTCAGTTTCAGCG 60.511 57.895 0.30 0.00 46.99 5.18
1637 1738 1.675714 GCCCAAATTTTAGCCTGGTGC 60.676 52.381 0.00 0.00 41.71 5.01
1861 2002 3.115892 CTTACCGCGCCGAAGCAA 61.116 61.111 0.00 0.00 39.83 3.91
1942 2129 1.105759 GGATGGTTCTGGCTGATGGC 61.106 60.000 0.00 0.00 40.90 4.40
1948 2135 1.417890 CCTAATCGGATGGTTCTGGCT 59.582 52.381 0.00 0.00 33.16 4.75
1987 2245 1.690219 CGAGGCCCTGTAGGAAGCAT 61.690 60.000 0.00 0.00 38.24 3.79
2154 2412 2.291043 ACGTACTGCCCCAAGGAGG 61.291 63.158 0.00 0.00 33.47 4.30
2194 2459 6.427547 CCACCACATAATCAGCACAAATTTTT 59.572 34.615 0.00 0.00 0.00 1.94
2198 2463 4.082081 CACCACCACATAATCAGCACAAAT 60.082 41.667 0.00 0.00 0.00 2.32
2602 2880 5.983540 TCAATAGCAACCACCAAAAAGTTT 58.016 33.333 0.00 0.00 0.00 2.66
2659 2937 0.253044 TCATTAGCTTGCTTCCGGCT 59.747 50.000 0.00 0.00 42.39 5.52
2663 2941 2.292845 GCCTGATCATTAGCTTGCTTCC 59.707 50.000 0.00 0.00 0.00 3.46
2746 3028 4.225942 TGAACCATCTGTGCTTCTTCCTAT 59.774 41.667 0.00 0.00 0.00 2.57
2797 3084 1.099689 GTGAGAGAGACCTCGAAGGG 58.900 60.000 5.98 0.00 44.08 3.95
2808 3095 4.838486 GCGGACGCGGTGAGAGAG 62.838 72.222 12.47 0.00 0.00 3.20
2810 3097 3.989698 AATGCGGACGCGGTGAGAG 62.990 63.158 12.47 0.00 45.51 3.20
2811 3098 3.583276 AAATGCGGACGCGGTGAGA 62.583 57.895 12.47 0.00 45.51 3.27
2824 3111 3.559655 GGGTCTCCACAAAACAAAAATGC 59.440 43.478 0.00 0.00 0.00 3.56
2913 3200 4.552166 ACTTTCATTGAAGTGGTTCACG 57.448 40.909 0.00 0.00 42.60 4.35
2972 3259 4.281941 AGAAAGGAGGAAACATGGAAAAGC 59.718 41.667 0.00 0.00 0.00 3.51
3036 3358 6.611613 ATCAACAGAGTTGGAAGAGATACA 57.388 37.500 9.72 0.00 0.00 2.29
3038 3360 8.156820 TCAAAATCAACAGAGTTGGAAGAGATA 58.843 33.333 9.72 0.00 0.00 1.98
3127 3505 5.735766 TGACCGACCATTGATGTGTTTATA 58.264 37.500 0.00 0.00 0.00 0.98
3132 3510 1.339055 CCTGACCGACCATTGATGTGT 60.339 52.381 0.00 0.00 0.00 3.72
3136 3514 1.224592 GGCCTGACCGACCATTGAT 59.775 57.895 0.00 0.00 0.00 2.57
3137 3515 1.488705 AAGGCCTGACCGACCATTGA 61.489 55.000 5.69 0.00 46.52 2.57
3138 3516 1.002134 AAGGCCTGACCGACCATTG 60.002 57.895 5.69 0.00 46.52 2.82
3139 3517 1.299976 GAAGGCCTGACCGACCATT 59.700 57.895 5.69 0.00 46.52 3.16
3140 3518 1.274703 ATGAAGGCCTGACCGACCAT 61.275 55.000 5.69 0.00 46.52 3.55
3141 3519 0.616395 TATGAAGGCCTGACCGACCA 60.616 55.000 5.69 0.00 46.52 4.02
3142 3520 0.539986 TTATGAAGGCCTGACCGACC 59.460 55.000 5.69 0.00 46.52 4.79
3143 3521 2.622064 ATTATGAAGGCCTGACCGAC 57.378 50.000 5.69 0.00 46.52 4.79
3144 3522 4.444306 CCTTAATTATGAAGGCCTGACCGA 60.444 45.833 5.69 0.00 46.52 4.69
3145 3523 3.815401 CCTTAATTATGAAGGCCTGACCG 59.185 47.826 5.69 0.00 46.52 4.79
3146 3524 4.141251 TCCCTTAATTATGAAGGCCTGACC 60.141 45.833 5.69 0.00 41.95 4.02
3147 3525 5.048846 TCCCTTAATTATGAAGGCCTGAC 57.951 43.478 5.69 4.34 41.95 3.51
3148 3526 5.930209 ATCCCTTAATTATGAAGGCCTGA 57.070 39.130 5.69 0.00 41.95 3.86
3149 3527 8.655935 AATTATCCCTTAATTATGAAGGCCTG 57.344 34.615 5.69 0.00 41.95 4.85
3202 3580 7.713942 CACCTGTAGTGTAGTTAACTCCTTTTT 59.286 37.037 12.39 0.00 41.93 1.94
3203 3581 7.215085 CACCTGTAGTGTAGTTAACTCCTTTT 58.785 38.462 12.39 0.00 41.93 2.27
3204 3582 6.756221 CACCTGTAGTGTAGTTAACTCCTTT 58.244 40.000 12.39 0.00 41.93 3.11
3205 3583 6.342338 CACCTGTAGTGTAGTTAACTCCTT 57.658 41.667 12.39 0.00 41.93 3.36
3206 3584 5.979288 CACCTGTAGTGTAGTTAACTCCT 57.021 43.478 12.39 9.23 41.93 3.69
3226 3604 0.249911 CACCGGATAAGCTAGGGCAC 60.250 60.000 9.46 0.00 41.70 5.01
3227 3605 2.040009 GCACCGGATAAGCTAGGGCA 62.040 60.000 9.46 0.00 41.70 5.36
3228 3606 1.301795 GCACCGGATAAGCTAGGGC 60.302 63.158 9.46 0.00 39.06 5.19
3229 3607 1.006102 CGCACCGGATAAGCTAGGG 60.006 63.158 9.46 0.00 0.00 3.53
3230 3608 4.655527 CGCACCGGATAAGCTAGG 57.344 61.111 9.46 0.00 0.00 3.02
3241 3619 2.590575 ACCAAACTGACCGCACCG 60.591 61.111 0.00 0.00 0.00 4.94
3242 3620 3.030652 CACCAAACTGACCGCACC 58.969 61.111 0.00 0.00 0.00 5.01
3243 3621 2.331451 GCACCAAACTGACCGCAC 59.669 61.111 0.00 0.00 0.00 5.34
3244 3622 2.046009 TAGGCACCAAACTGACCGCA 62.046 55.000 0.00 0.00 0.00 5.69
3245 3623 0.887387 TTAGGCACCAAACTGACCGC 60.887 55.000 0.00 0.00 0.00 5.68
3246 3624 1.265905 GTTTAGGCACCAAACTGACCG 59.734 52.381 7.20 0.00 33.91 4.79
3247 3625 2.583143 AGTTTAGGCACCAAACTGACC 58.417 47.619 13.13 0.00 42.98 4.02
3248 3626 3.630312 TCAAGTTTAGGCACCAAACTGAC 59.370 43.478 14.07 0.00 43.62 3.51
3249 3627 3.892284 TCAAGTTTAGGCACCAAACTGA 58.108 40.909 14.07 11.62 43.62 3.41
3250 3628 4.647424 TTCAAGTTTAGGCACCAAACTG 57.353 40.909 14.07 10.26 43.62 3.16
3251 3629 5.669164 TTTTCAAGTTTAGGCACCAAACT 57.331 34.783 9.87 9.87 45.73 2.66
3252 3630 6.918892 ATTTTTCAAGTTTAGGCACCAAAC 57.081 33.333 6.62 6.62 36.37 2.93
3253 3631 7.492994 GTGTATTTTTCAAGTTTAGGCACCAAA 59.507 33.333 0.00 0.00 0.00 3.28
3254 3632 6.981559 GTGTATTTTTCAAGTTTAGGCACCAA 59.018 34.615 0.00 0.00 0.00 3.67
3255 3633 6.096987 TGTGTATTTTTCAAGTTTAGGCACCA 59.903 34.615 0.00 0.00 0.00 4.17
3256 3634 6.508777 TGTGTATTTTTCAAGTTTAGGCACC 58.491 36.000 0.00 0.00 0.00 5.01
3257 3635 7.995463 TTGTGTATTTTTCAAGTTTAGGCAC 57.005 32.000 0.00 0.00 0.00 5.01
3258 3636 9.092876 CTTTTGTGTATTTTTCAAGTTTAGGCA 57.907 29.630 0.00 0.00 0.00 4.75
3259 3637 9.093970 ACTTTTGTGTATTTTTCAAGTTTAGGC 57.906 29.630 0.00 0.00 0.00 3.93
3278 3656 5.815740 AGACAAGTTACGACATCACTTTTGT 59.184 36.000 0.00 0.00 0.00 2.83
3279 3657 6.129393 CAGACAAGTTACGACATCACTTTTG 58.871 40.000 0.00 0.00 0.00 2.44
3280 3658 5.236478 CCAGACAAGTTACGACATCACTTTT 59.764 40.000 0.00 0.00 0.00 2.27
3281 3659 4.750098 CCAGACAAGTTACGACATCACTTT 59.250 41.667 0.00 0.00 0.00 2.66
3282 3660 4.307432 CCAGACAAGTTACGACATCACTT 58.693 43.478 0.00 0.00 0.00 3.16
3283 3661 3.306088 CCCAGACAAGTTACGACATCACT 60.306 47.826 0.00 0.00 0.00 3.41
3284 3662 2.993899 CCCAGACAAGTTACGACATCAC 59.006 50.000 0.00 0.00 0.00 3.06
3285 3663 2.611971 GCCCAGACAAGTTACGACATCA 60.612 50.000 0.00 0.00 0.00 3.07
3286 3664 2.000447 GCCCAGACAAGTTACGACATC 59.000 52.381 0.00 0.00 0.00 3.06
3287 3665 1.671850 CGCCCAGACAAGTTACGACAT 60.672 52.381 0.00 0.00 0.00 3.06
3288 3666 0.319211 CGCCCAGACAAGTTACGACA 60.319 55.000 0.00 0.00 0.00 4.35
3289 3667 0.319297 ACGCCCAGACAAGTTACGAC 60.319 55.000 0.00 0.00 0.00 4.34
3290 3668 0.390124 AACGCCCAGACAAGTTACGA 59.610 50.000 0.00 0.00 0.00 3.43
3291 3669 0.788391 GAACGCCCAGACAAGTTACG 59.212 55.000 0.00 0.00 0.00 3.18
3292 3670 1.873698 TGAACGCCCAGACAAGTTAC 58.126 50.000 0.00 0.00 0.00 2.50
3293 3671 2.623878 TTGAACGCCCAGACAAGTTA 57.376 45.000 0.00 0.00 0.00 2.24
3294 3672 1.757682 TTTGAACGCCCAGACAAGTT 58.242 45.000 0.00 0.00 0.00 2.66
3295 3673 1.981256 ATTTGAACGCCCAGACAAGT 58.019 45.000 0.00 0.00 0.00 3.16
3296 3674 2.159707 CGTATTTGAACGCCCAGACAAG 60.160 50.000 0.00 0.00 35.87 3.16
3297 3675 1.801771 CGTATTTGAACGCCCAGACAA 59.198 47.619 0.00 0.00 35.87 3.18
3298 3676 1.434555 CGTATTTGAACGCCCAGACA 58.565 50.000 0.00 0.00 35.87 3.41
3299 3677 0.725117 CCGTATTTGAACGCCCAGAC 59.275 55.000 0.00 0.00 41.51 3.51
3300 3678 0.322322 ACCGTATTTGAACGCCCAGA 59.678 50.000 0.00 0.00 41.51 3.86
3301 3679 0.446222 CACCGTATTTGAACGCCCAG 59.554 55.000 0.00 0.00 41.51 4.45
3302 3680 1.579084 GCACCGTATTTGAACGCCCA 61.579 55.000 0.00 0.00 41.51 5.36
3303 3681 1.135939 GCACCGTATTTGAACGCCC 59.864 57.895 0.00 0.00 41.51 6.13
3304 3682 1.135939 GGCACCGTATTTGAACGCC 59.864 57.895 0.00 0.00 41.51 5.68
3305 3683 0.096454 GAGGCACCGTATTTGAACGC 59.904 55.000 0.00 0.00 41.51 4.84
3306 3684 1.722011 AGAGGCACCGTATTTGAACG 58.278 50.000 0.00 0.00 42.49 3.95
3307 3685 3.864003 GTCTAGAGGCACCGTATTTGAAC 59.136 47.826 0.00 0.00 0.00 3.18
3308 3686 3.428452 CGTCTAGAGGCACCGTATTTGAA 60.428 47.826 0.00 0.00 0.00 2.69
3309 3687 2.098607 CGTCTAGAGGCACCGTATTTGA 59.901 50.000 0.00 0.00 0.00 2.69
3310 3688 2.159282 ACGTCTAGAGGCACCGTATTTG 60.159 50.000 12.30 0.00 0.00 2.32
3311 3689 2.097825 ACGTCTAGAGGCACCGTATTT 58.902 47.619 12.30 0.00 0.00 1.40
3312 3690 1.760192 ACGTCTAGAGGCACCGTATT 58.240 50.000 12.30 0.00 0.00 1.89
3313 3691 2.627515 TACGTCTAGAGGCACCGTAT 57.372 50.000 12.30 0.00 33.32 3.06
3314 3692 2.216046 CATACGTCTAGAGGCACCGTA 58.784 52.381 12.30 12.71 38.24 4.02
3315 3693 1.022735 CATACGTCTAGAGGCACCGT 58.977 55.000 12.30 10.95 35.68 4.83
3316 3694 0.317938 GCATACGTCTAGAGGCACCG 60.318 60.000 12.30 5.30 0.00 4.94
3317 3695 0.032267 GGCATACGTCTAGAGGCACC 59.968 60.000 12.30 5.31 0.00 5.01
3318 3696 0.317938 CGGCATACGTCTAGAGGCAC 60.318 60.000 12.30 0.00 37.93 5.01
3319 3697 2.030551 CGGCATACGTCTAGAGGCA 58.969 57.895 12.30 0.00 37.93 4.75
3320 3698 1.371881 GCGGCATACGTCTAGAGGC 60.372 63.158 12.30 2.53 46.52 4.70
3321 3699 1.286260 GGCGGCATACGTCTAGAGG 59.714 63.158 10.86 10.86 45.50 3.69
3322 3700 4.946411 GGCGGCATACGTCTAGAG 57.054 61.111 3.07 0.00 45.50 2.43
3327 3705 2.078914 CGATACGGCGGCATACGTC 61.079 63.158 13.24 0.00 46.52 4.34
3328 3706 2.050714 CGATACGGCGGCATACGT 60.051 61.111 13.24 5.09 46.52 3.57
3330 3708 1.002250 CACTCGATACGGCGGCATAC 61.002 60.000 13.24 0.00 0.00 2.39
3331 3709 1.284715 CACTCGATACGGCGGCATA 59.715 57.895 13.24 0.00 0.00 3.14
3332 3710 2.027605 CACTCGATACGGCGGCAT 59.972 61.111 13.24 3.47 0.00 4.40
3333 3711 4.865761 GCACTCGATACGGCGGCA 62.866 66.667 13.24 0.00 0.00 5.69
3335 3713 4.944372 GGGCACTCGATACGGCGG 62.944 72.222 13.24 0.00 0.00 6.13
3339 3717 4.547905 ACGCGGGCACTCGATACG 62.548 66.667 12.47 0.00 0.00 3.06
3340 3718 2.954868 CACGCGGGCACTCGATAC 60.955 66.667 12.47 0.00 0.00 2.24
3341 3719 4.201679 CCACGCGGGCACTCGATA 62.202 66.667 12.47 0.00 0.00 2.92
3351 3729 3.499737 GACTGGAATGCCACGCGG 61.500 66.667 12.47 0.00 39.92 6.46
3352 3730 2.434884 AGACTGGAATGCCACGCG 60.435 61.111 3.53 3.53 39.92 6.01
3353 3731 1.639298 GACAGACTGGAATGCCACGC 61.639 60.000 7.51 0.00 39.92 5.34
3354 3732 1.354337 CGACAGACTGGAATGCCACG 61.354 60.000 7.51 0.00 39.92 4.94
3355 3733 1.639298 GCGACAGACTGGAATGCCAC 61.639 60.000 7.51 0.00 39.92 5.01
3356 3734 1.375908 GCGACAGACTGGAATGCCA 60.376 57.895 7.51 0.00 43.47 4.92
3357 3735 0.175760 TAGCGACAGACTGGAATGCC 59.824 55.000 7.51 0.00 0.00 4.40
3358 3736 1.565305 CTAGCGACAGACTGGAATGC 58.435 55.000 7.51 5.01 0.00 3.56
3359 3737 1.804372 GCCTAGCGACAGACTGGAATG 60.804 57.143 7.51 0.00 0.00 2.67
3360 3738 0.461961 GCCTAGCGACAGACTGGAAT 59.538 55.000 7.51 0.00 0.00 3.01
3361 3739 1.605058 GGCCTAGCGACAGACTGGAA 61.605 60.000 7.51 0.00 0.00 3.53
3362 3740 2.052690 GGCCTAGCGACAGACTGGA 61.053 63.158 7.51 0.00 0.00 3.86
3363 3741 2.351244 TGGCCTAGCGACAGACTGG 61.351 63.158 3.32 0.00 0.00 4.00
3364 3742 1.153745 GTGGCCTAGCGACAGACTG 60.154 63.158 3.32 0.00 37.24 3.51
3365 3743 1.606601 TGTGGCCTAGCGACAGACT 60.607 57.895 3.32 0.00 41.89 3.24
3366 3744 2.970639 TGTGGCCTAGCGACAGAC 59.029 61.111 3.32 0.00 41.89 3.51
3370 3748 0.807667 CTGACATGTGGCCTAGCGAC 60.808 60.000 1.15 0.00 37.76 5.19
3371 3749 1.517361 CTGACATGTGGCCTAGCGA 59.483 57.895 1.15 0.00 0.00 4.93
3372 3750 2.176273 GCTGACATGTGGCCTAGCG 61.176 63.158 1.15 0.00 0.00 4.26
3373 3751 2.176273 CGCTGACATGTGGCCTAGC 61.176 63.158 1.15 4.40 0.00 3.42
3374 3752 1.522355 CCGCTGACATGTGGCCTAG 60.522 63.158 1.15 0.00 0.00 3.02
3375 3753 1.836999 AACCGCTGACATGTGGCCTA 61.837 55.000 1.15 0.00 41.02 3.93
3376 3754 3.196207 AACCGCTGACATGTGGCCT 62.196 57.895 1.15 0.00 41.02 5.19
3377 3755 2.672996 AACCGCTGACATGTGGCC 60.673 61.111 1.15 0.00 41.02 5.36
3378 3756 2.562912 CAACCGCTGACATGTGGC 59.437 61.111 1.15 6.71 41.02 5.01
3379 3757 2.562912 GCAACCGCTGACATGTGG 59.437 61.111 1.15 0.00 42.85 4.17
3380 3758 0.673333 TAGGCAACCGCTGACATGTG 60.673 55.000 1.15 0.00 34.24 3.21
3381 3759 0.673644 GTAGGCAACCGCTGACATGT 60.674 55.000 0.00 0.00 34.24 3.21
3382 3760 1.695893 CGTAGGCAACCGCTGACATG 61.696 60.000 0.00 0.00 34.24 3.21
3383 3761 1.447838 CGTAGGCAACCGCTGACAT 60.448 57.895 0.00 0.00 34.24 3.06
3384 3762 2.048597 CGTAGGCAACCGCTGACA 60.049 61.111 0.00 0.00 34.24 3.58
3385 3763 3.488090 GCGTAGGCAACCGCTGAC 61.488 66.667 1.75 0.00 46.08 3.51
3391 3769 4.439472 CAACGCGCGTAGGCAACC 62.439 66.667 37.93 0.00 39.92 3.77
3392 3770 3.708734 ACAACGCGCGTAGGCAAC 61.709 61.111 37.93 0.00 39.92 4.17
3393 3771 3.707700 CACAACGCGCGTAGGCAA 61.708 61.111 37.93 0.00 39.92 4.52
3394 3772 4.649310 TCACAACGCGCGTAGGCA 62.649 61.111 37.93 18.08 39.92 4.75
3395 3773 3.838795 CTCACAACGCGCGTAGGC 61.839 66.667 37.93 0.00 0.00 3.93
3396 3774 2.860690 TAGCTCACAACGCGCGTAGG 62.861 60.000 37.93 31.29 0.00 3.18
3397 3775 0.866061 ATAGCTCACAACGCGCGTAG 60.866 55.000 37.93 29.26 0.00 3.51
3398 3776 1.137459 CATAGCTCACAACGCGCGTA 61.137 55.000 37.93 20.08 0.00 4.42
3399 3777 2.126071 ATAGCTCACAACGCGCGT 60.126 55.556 32.73 32.73 0.00 6.01
3400 3778 2.317689 CATAGCTCACAACGCGCG 59.682 61.111 30.96 30.96 0.00 6.86
3401 3779 2.021931 GCATAGCTCACAACGCGC 59.978 61.111 5.73 0.00 0.00 6.86
3402 3780 0.315625 CATGCATAGCTCACAACGCG 60.316 55.000 3.53 3.53 0.00 6.01
3403 3781 0.729116 ACATGCATAGCTCACAACGC 59.271 50.000 0.00 0.00 0.00 4.84
3404 3782 2.160219 ACAACATGCATAGCTCACAACG 59.840 45.455 0.00 0.00 0.00 4.10
3405 3783 3.837213 ACAACATGCATAGCTCACAAC 57.163 42.857 0.00 0.00 0.00 3.32
3406 3784 4.852134 AAACAACATGCATAGCTCACAA 57.148 36.364 0.00 0.00 0.00 3.33
3407 3785 4.852134 AAAACAACATGCATAGCTCACA 57.148 36.364 0.00 0.00 0.00 3.58
3433 3811 3.774842 TTAAAATCCAGGGGCATTCCT 57.225 42.857 0.00 0.00 37.71 3.36
3434 3812 6.493189 TTAATTAAAATCCAGGGGCATTCC 57.507 37.500 0.00 0.00 0.00 3.01
3435 3813 8.978874 AAATTAATTAAAATCCAGGGGCATTC 57.021 30.769 1.21 0.00 0.00 2.67
3436 3814 9.407380 GAAAATTAATTAAAATCCAGGGGCATT 57.593 29.630 1.21 0.00 0.00 3.56
3437 3815 7.714813 CGAAAATTAATTAAAATCCAGGGGCAT 59.285 33.333 1.21 0.00 0.00 4.40
3438 3816 7.044798 CGAAAATTAATTAAAATCCAGGGGCA 58.955 34.615 1.21 0.00 0.00 5.36
3439 3817 6.018262 GCGAAAATTAATTAAAATCCAGGGGC 60.018 38.462 1.21 0.00 0.00 5.80
3440 3818 7.044798 TGCGAAAATTAATTAAAATCCAGGGG 58.955 34.615 1.21 0.00 0.00 4.79
3441 3819 8.485976 TTGCGAAAATTAATTAAAATCCAGGG 57.514 30.769 1.21 0.00 0.00 4.45
3491 3869 0.249953 TACGCTGACTCCCGCAAAAA 60.250 50.000 0.00 0.00 0.00 1.94
3492 3870 0.947180 GTACGCTGACTCCCGCAAAA 60.947 55.000 0.00 0.00 0.00 2.44
3493 3871 1.373748 GTACGCTGACTCCCGCAAA 60.374 57.895 0.00 0.00 0.00 3.68
3494 3872 2.260434 GTACGCTGACTCCCGCAA 59.740 61.111 0.00 0.00 0.00 4.85
3495 3873 2.986979 TGTACGCTGACTCCCGCA 60.987 61.111 0.00 0.00 0.00 5.69
3496 3874 2.202623 CTGTACGCTGACTCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
3497 3875 2.490217 CCTGTACGCTGACTCCCG 59.510 66.667 0.00 0.00 0.00 5.14
3498 3876 1.681327 TCCCTGTACGCTGACTCCC 60.681 63.158 0.00 0.00 0.00 4.30
3499 3877 1.511768 GTCCCTGTACGCTGACTCC 59.488 63.158 2.30 0.00 0.00 3.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.