Multiple sequence alignment - TraesCS2D01G393100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G393100 chr2D 100.000 4369 0 0 1 4369 501667443 501671811 0.000000e+00 8069.0
1 TraesCS2D01G393100 chr2D 85.016 614 74 11 104 713 58735630 58735031 3.740000e-170 608.0
2 TraesCS2D01G393100 chr2D 89.928 139 12 1 475 613 501667845 501667981 1.250000e-40 178.0
3 TraesCS2D01G393100 chr2D 89.928 139 12 1 403 539 501667917 501668055 1.250000e-40 178.0
4 TraesCS2D01G393100 chr2B 91.887 3217 146 50 742 3863 589089098 589092294 0.000000e+00 4388.0
5 TraesCS2D01G393100 chr2B 85.237 359 26 14 4034 4368 589096981 589097336 1.160000e-90 344.0
6 TraesCS2D01G393100 chr2B 84.211 152 14 7 3887 4034 589093084 589093229 5.890000e-29 139.0
7 TraesCS2D01G393100 chr2A 90.914 1882 112 26 1964 3798 646866153 646868022 0.000000e+00 2473.0
8 TraesCS2D01G393100 chr2A 92.590 1255 48 17 712 1928 646864915 646866162 0.000000e+00 1760.0
9 TraesCS2D01G393100 chr2A 86.354 491 32 21 3882 4369 646868058 646868516 1.810000e-138 503.0
10 TraesCS2D01G393100 chr2A 100.000 47 0 0 3806 3852 646868013 646868059 2.160000e-13 87.9
11 TraesCS2D01G393100 chr6B 90.686 612 53 4 1 611 331017356 331017964 0.000000e+00 811.0
12 TraesCS2D01G393100 chr4A 90.422 616 45 6 6 611 141907454 141906843 0.000000e+00 798.0
13 TraesCS2D01G393100 chr5A 90.177 621 47 6 1 611 25117674 25117058 0.000000e+00 797.0
14 TraesCS2D01G393100 chr5A 89.617 626 50 7 1 616 10502075 10502695 0.000000e+00 782.0
15 TraesCS2D01G393100 chr5A 83.640 544 74 11 1 540 311003318 311003850 8.440000e-137 497.0
16 TraesCS2D01G393100 chr3A 83.241 543 85 6 1 540 13858899 13858360 1.090000e-135 494.0
17 TraesCS2D01G393100 chr7A 91.429 140 10 2 402 540 6424049 6423911 1.600000e-44 191.0
18 TraesCS2D01G393100 chr7D 84.252 127 19 1 489 615 45832544 45832419 5.930000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G393100 chr2D 501667443 501671811 4368 False 2808.333333 8069 93.285333 1 4369 3 chr2D.!!$F1 4368
1 TraesCS2D01G393100 chr2D 58735031 58735630 599 True 608.000000 608 85.016000 104 713 1 chr2D.!!$R1 609
2 TraesCS2D01G393100 chr2B 589089098 589097336 8238 False 1623.666667 4388 87.111667 742 4368 3 chr2B.!!$F1 3626
3 TraesCS2D01G393100 chr2A 646864915 646868516 3601 False 1205.975000 2473 92.464500 712 4369 4 chr2A.!!$F1 3657
4 TraesCS2D01G393100 chr6B 331017356 331017964 608 False 811.000000 811 90.686000 1 611 1 chr6B.!!$F1 610
5 TraesCS2D01G393100 chr4A 141906843 141907454 611 True 798.000000 798 90.422000 6 611 1 chr4A.!!$R1 605
6 TraesCS2D01G393100 chr5A 25117058 25117674 616 True 797.000000 797 90.177000 1 611 1 chr5A.!!$R1 610
7 TraesCS2D01G393100 chr5A 10502075 10502695 620 False 782.000000 782 89.617000 1 616 1 chr5A.!!$F1 615
8 TraesCS2D01G393100 chr5A 311003318 311003850 532 False 497.000000 497 83.640000 1 540 1 chr5A.!!$F2 539
9 TraesCS2D01G393100 chr3A 13858360 13858899 539 True 494.000000 494 83.241000 1 540 1 chr3A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 734 0.035820 CGTAGCAGGCCCCTTTAACA 60.036 55.000 0.00 0.0 0.00 2.41 F
1324 1374 0.317519 GCTGTACCGTGGTTTGCAAC 60.318 55.000 0.00 0.0 0.00 4.17 F
2210 2296 1.661112 GCCTTCTCGAAGATGAAACCG 59.339 52.381 8.19 0.0 40.79 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1605 1.002142 GGGTTTTGTGCTACCAACGTC 60.002 52.381 0.00 0.00 36.10 4.34 R
3037 3128 0.322648 TCAGCGGGGATATCAGCATG 59.677 55.000 15.97 11.88 37.54 4.06 R
3877 4817 0.179936 CTCCCTCATCAACTGCCCTC 59.820 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.754745 TCTCCCACCTCAACTGCAC 59.245 57.895 0.00 0.00 0.00 4.57
46 47 4.681978 GTCGTTGCTCCGCCACCT 62.682 66.667 0.00 0.00 0.00 4.00
143 145 1.979155 CGTCCTGGAGGAGCACTGA 60.979 63.158 10.85 0.00 46.49 3.41
188 190 2.703536 TCCTCAAGGTCAGCTACAAACA 59.296 45.455 0.00 0.00 36.34 2.83
201 203 2.676632 ACAAACATCGGTACCGCATA 57.323 45.000 29.64 13.36 39.59 3.14
207 209 0.462375 ATCGGTACCGCATACAGCAA 59.538 50.000 29.64 9.31 46.13 3.91
208 210 0.462375 TCGGTACCGCATACAGCAAT 59.538 50.000 29.64 0.00 46.13 3.56
224 226 4.171005 CAGCAATAGTTCCTGCAACAATG 58.829 43.478 0.00 0.00 41.17 2.82
264 266 2.572290 CTGGGACGAGGTGAAGTTTTT 58.428 47.619 0.00 0.00 0.00 1.94
332 334 3.004944 GCGGGAATACAGAGAAGAGGTAG 59.995 52.174 0.00 0.00 0.00 3.18
365 368 5.757808 ACTGTAAATTTTGCAACAATGGTCC 59.242 36.000 0.00 0.00 0.00 4.46
509 524 3.561313 GGGGTCTTGTTGCAGGAATTAGA 60.561 47.826 0.00 0.00 0.00 2.10
560 575 6.435430 AAAAGGAGAACAAATTTTGCAACC 57.565 33.333 9.04 7.79 0.00 3.77
573 588 0.179004 TGCAACCGGGATCTTGTTGT 60.179 50.000 6.32 0.00 41.04 3.32
583 598 4.141937 CGGGATCTTGTTGTAGGAATGAGA 60.142 45.833 0.00 0.00 0.00 3.27
597 612 3.511146 GGAATGAGATTTGCAACAAGGGA 59.489 43.478 0.00 0.00 0.00 4.20
646 664 1.668419 GGACTGCTCGCCATACAATT 58.332 50.000 0.00 0.00 0.00 2.32
648 666 2.279741 GACTGCTCGCCATACAATTGA 58.720 47.619 13.59 0.00 0.00 2.57
657 675 3.610585 CGCCATACAATTGAACGGTTTGT 60.611 43.478 13.59 0.00 37.37 2.83
665 683 3.249973 GAACGGTTTGTGAGGCGGC 62.250 63.158 0.00 0.00 0.00 6.53
674 692 2.174319 GTGAGGCGGCGGATCTTTC 61.174 63.158 9.78 0.00 0.00 2.62
676 694 1.040893 TGAGGCGGCGGATCTTTCTA 61.041 55.000 9.78 0.00 0.00 2.10
691 709 3.930848 TCTTTCTAAAAAGATCCGTCGGC 59.069 43.478 6.34 0.00 44.63 5.54
715 733 2.776659 CGTAGCAGGCCCCTTTAAC 58.223 57.895 0.00 0.00 0.00 2.01
716 734 0.035820 CGTAGCAGGCCCCTTTAACA 60.036 55.000 0.00 0.00 0.00 2.41
717 735 1.612199 CGTAGCAGGCCCCTTTAACAA 60.612 52.381 0.00 0.00 0.00 2.83
718 736 2.521126 GTAGCAGGCCCCTTTAACAAA 58.479 47.619 0.00 0.00 0.00 2.83
719 737 2.095604 AGCAGGCCCCTTTAACAAAA 57.904 45.000 0.00 0.00 0.00 2.44
820 842 2.664851 CTGTTCGGTTGCGGCAGA 60.665 61.111 1.67 0.00 0.00 4.26
823 845 4.617520 TTCGGTTGCGGCAGAGCA 62.618 61.111 1.67 0.00 46.54 4.26
1285 1334 5.053978 AGCCAGGGGTAAGAAAATAGATG 57.946 43.478 0.00 0.00 0.00 2.90
1324 1374 0.317519 GCTGTACCGTGGTTTGCAAC 60.318 55.000 0.00 0.00 0.00 4.17
1334 1384 4.355437 CGTGGTTTGCAACTGTGATAAAA 58.645 39.130 0.00 0.00 0.00 1.52
1386 1436 2.680841 TGCTCGTGGTTATATGGTTTGC 59.319 45.455 0.00 0.00 0.00 3.68
1417 1467 5.752955 CACACATTGAAACCCGAGAAAAATT 59.247 36.000 0.00 0.00 0.00 1.82
1452 1503 4.331968 TCTCAGAGTTCTCTGAACCTCTC 58.668 47.826 25.85 0.00 44.98 3.20
1454 1505 4.331968 TCAGAGTTCTCTGAACCTCTCTC 58.668 47.826 24.48 0.00 43.03 3.20
1511 1570 4.777384 GGGTTTTGCAAGCCTTGG 57.223 55.556 17.82 0.00 45.81 3.61
1544 1605 6.556212 TCTTTCGACTAGCTGAACATTAGAG 58.444 40.000 0.00 0.00 0.00 2.43
1545 1606 6.374613 TCTTTCGACTAGCTGAACATTAGAGA 59.625 38.462 0.00 0.00 0.00 3.10
1579 1640 2.036256 CCCTTGGCCCCTTCACTG 59.964 66.667 0.00 0.00 0.00 3.66
1582 1643 1.685224 CTTGGCCCCTTCACTGCTA 59.315 57.895 0.00 0.00 0.00 3.49
1935 2021 6.025749 TGTGAGGTGTCAGTAAATGTAGAG 57.974 41.667 0.00 0.00 31.53 2.43
2047 2133 7.065324 CGGTTGGCATAGTACTTTTATTGAAGA 59.935 37.037 0.00 0.00 0.00 2.87
2083 2169 6.057533 CACCTTATCAGGACATAGCATTTCA 58.942 40.000 0.00 0.00 44.19 2.69
2099 2185 4.815846 GCATTTCAATTGACCTTGTTTGGT 59.184 37.500 7.89 0.00 44.10 3.67
2119 2205 4.044825 TGGTTTGTAACAAGGACCCCATAT 59.955 41.667 0.00 0.00 0.00 1.78
2210 2296 1.661112 GCCTTCTCGAAGATGAAACCG 59.339 52.381 8.19 0.00 40.79 4.44
2238 2324 5.663456 AGCGGCACATTGAATATTCATTTT 58.337 33.333 18.61 6.13 37.00 1.82
2243 2329 7.184106 GGCACATTGAATATTCATTTTGCAAG 58.816 34.615 31.93 19.38 41.93 4.01
2505 2591 8.141298 TCACCTCTATTGAACTACCATTGTTA 57.859 34.615 0.00 0.00 0.00 2.41
2507 2593 8.665685 CACCTCTATTGAACTACCATTGTTAAC 58.334 37.037 0.00 0.00 0.00 2.01
2600 2686 2.814805 CCATCCTGTGGGAACTGAAT 57.185 50.000 0.00 0.00 45.78 2.57
2606 2692 4.541705 TCCTGTGGGAACTGAATTTGAAA 58.458 39.130 0.00 0.00 38.93 2.69
2664 2750 4.082245 ACACTTGGTGTATAAAATGCAGCC 60.082 41.667 1.18 0.00 45.56 4.85
2817 2907 5.049129 AGCAAACTGATCTTTTCTAGTGCAC 60.049 40.000 9.40 9.40 0.00 4.57
2818 2908 5.049129 GCAAACTGATCTTTTCTAGTGCACT 60.049 40.000 25.12 25.12 0.00 4.40
2819 2909 6.147821 GCAAACTGATCTTTTCTAGTGCACTA 59.852 38.462 24.63 24.63 0.00 2.74
2820 2910 7.513968 CAAACTGATCTTTTCTAGTGCACTAC 58.486 38.462 22.67 10.77 0.00 2.73
2859 2950 3.852578 ACTGACTGGGAAGGTGGATATTT 59.147 43.478 0.00 0.00 0.00 1.40
2866 2957 2.370849 GGAAGGTGGATATTTCCCGCTA 59.629 50.000 0.00 0.00 41.83 4.26
2870 2961 3.071167 AGGTGGATATTTCCCGCTAACTC 59.929 47.826 0.00 0.00 41.83 3.01
2896 2987 7.845037 TGCAATTTGATGATAATTACCCAACA 58.155 30.769 0.00 0.00 0.00 3.33
2947 3038 7.446625 GCAGGTTTCTTCCATATCAATGTCTAT 59.553 37.037 0.00 0.00 0.00 1.98
2958 3049 8.319881 CCATATCAATGTCTATGATTCTGGAGT 58.680 37.037 10.12 0.00 39.18 3.85
2974 3065 6.309389 TCTGGAGTAGTATGCCTATCGATA 57.691 41.667 4.78 4.78 0.00 2.92
2982 3073 2.375014 TGCCTATCGATACTGGGTGA 57.625 50.000 11.53 0.00 0.00 4.02
2986 3077 3.762288 GCCTATCGATACTGGGTGATGTA 59.238 47.826 11.53 0.00 0.00 2.29
2990 3081 6.657966 CCTATCGATACTGGGTGATGTAAGTA 59.342 42.308 0.00 0.00 0.00 2.24
3013 3104 8.091449 AGTATAGACTGACTGAAACTTTCCTTG 58.909 37.037 0.00 0.00 33.41 3.61
3043 3134 2.875485 GCACTCTGCACCATGCTG 59.125 61.111 2.02 1.80 45.31 4.41
3067 3158 1.770658 TCCCCGCTGATCTTTCATGAT 59.229 47.619 0.00 0.00 0.00 2.45
3070 3161 4.136796 CCCCGCTGATCTTTCATGATTTA 58.863 43.478 0.00 0.00 0.00 1.40
3083 3174 9.312904 TCTTTCATGATTTACCTCATCCTTTTT 57.687 29.630 0.00 0.00 33.59 1.94
3143 3234 0.543277 TAGGCATCCAGGAGTTGCTG 59.457 55.000 13.71 0.00 40.44 4.41
3165 3256 4.080356 TGGATGACCCAAATCCTAACTCAG 60.080 45.833 4.23 0.00 43.29 3.35
3206 3297 9.422681 TGCTATGAACTCTATAAGAAGGTTAGT 57.577 33.333 0.00 0.00 0.00 2.24
3211 3302 9.096823 TGAACTCTATAAGAAGGTTAGTTTCCA 57.903 33.333 0.00 0.00 0.00 3.53
3222 3313 8.319881 AGAAGGTTAGTTTCCATAACTAGAACC 58.680 37.037 11.65 11.65 38.35 3.62
3231 3322 5.985911 TCCATAACTAGAACCTGCTTAACC 58.014 41.667 0.00 0.00 0.00 2.85
3239 3330 0.321653 ACCTGCTTAACCTGAAGGCG 60.322 55.000 0.00 0.00 39.32 5.52
3243 3334 1.574702 GCTTAACCTGAAGGCGCGTT 61.575 55.000 16.28 16.28 39.32 4.84
3264 3356 7.201461 CGCGTTTCCTTAGTTTTAATACAGCTA 60.201 37.037 0.00 0.00 0.00 3.32
3268 3360 9.456147 TTTCCTTAGTTTTAATACAGCTATGCA 57.544 29.630 0.00 0.00 0.00 3.96
3269 3361 9.456147 TTCCTTAGTTTTAATACAGCTATGCAA 57.544 29.630 0.00 0.00 0.00 4.08
3275 3369 8.960591 AGTTTTAATACAGCTATGCAATTGACT 58.039 29.630 10.34 0.00 0.00 3.41
3277 3371 8.504812 TTTAATACAGCTATGCAATTGACTCA 57.495 30.769 10.34 0.00 0.00 3.41
3295 3389 2.096248 TCACCCTGTTTGTTTGTGTCC 58.904 47.619 0.00 0.00 0.00 4.02
3342 3436 1.540363 GGAACAAAGTCCGTGAGCAGA 60.540 52.381 0.00 0.00 0.00 4.26
3372 3466 1.215655 CCCTTCGCGCATGTAGCTAC 61.216 60.000 17.30 17.30 42.61 3.58
3373 3467 0.249073 CCTTCGCGCATGTAGCTACT 60.249 55.000 23.84 7.64 42.61 2.57
3374 3468 1.124462 CTTCGCGCATGTAGCTACTC 58.876 55.000 23.84 12.19 42.61 2.59
3375 3469 0.738975 TTCGCGCATGTAGCTACTCT 59.261 50.000 23.84 9.33 42.61 3.24
3377 3471 1.531578 TCGCGCATGTAGCTACTCTAG 59.468 52.381 23.84 13.83 42.61 2.43
3378 3472 1.264557 CGCGCATGTAGCTACTCTAGT 59.735 52.381 23.84 3.38 42.61 2.57
3379 3473 2.479275 CGCGCATGTAGCTACTCTAGTA 59.521 50.000 23.84 3.60 42.61 1.82
3403 3519 9.599322 GTAGTGCATAATATTAGTGTGCATTTC 57.401 33.333 19.81 12.68 46.08 2.17
3405 3521 7.012327 AGTGCATAATATTAGTGTGCATTTCGT 59.988 33.333 19.81 5.88 46.08 3.85
3407 3523 7.643371 TGCATAATATTAGTGTGCATTTCGTTG 59.357 33.333 15.14 0.04 40.51 4.10
3410 3531 1.529226 TAGTGTGCATTTCGTTGGGG 58.471 50.000 0.00 0.00 0.00 4.96
3420 3541 1.420430 TTCGTTGGGGACTGAAGTCT 58.580 50.000 10.17 0.00 44.20 3.24
3424 3545 2.164624 CGTTGGGGACTGAAGTCTAGAG 59.835 54.545 10.17 0.00 44.20 2.43
3425 3546 3.166679 GTTGGGGACTGAAGTCTAGAGT 58.833 50.000 10.17 0.00 44.20 3.24
3431 3552 1.067495 ACTGAAGTCTAGAGTTGCGCC 60.067 52.381 17.62 3.87 0.00 6.53
3644 3778 4.525487 CCTACCTTGCCATTATTCATGCAT 59.475 41.667 0.00 0.00 0.00 3.96
3662 3796 2.138320 CATGAAAGATGGGTCGGATCG 58.862 52.381 0.00 0.00 0.00 3.69
3784 3951 1.211457 CCCAAAGGAGAGAGACCCATG 59.789 57.143 0.00 0.00 33.47 3.66
3795 3962 2.938798 ACCCATGAAGCCCGGGAA 60.939 61.111 29.31 6.33 43.21 3.97
3796 3963 2.124151 CCCATGAAGCCCGGGAAG 60.124 66.667 29.31 5.95 43.21 3.46
3797 3964 2.677228 CCATGAAGCCCGGGAAGT 59.323 61.111 29.31 7.92 0.00 3.01
3798 3965 1.750399 CCATGAAGCCCGGGAAGTG 60.750 63.158 29.31 14.46 0.00 3.16
3799 3966 1.299648 CATGAAGCCCGGGAAGTGA 59.700 57.895 29.31 1.48 0.00 3.41
3800 3967 0.745845 CATGAAGCCCGGGAAGTGAG 60.746 60.000 29.31 5.16 0.00 3.51
3801 3968 1.201429 ATGAAGCCCGGGAAGTGAGT 61.201 55.000 29.31 0.00 0.00 3.41
3802 3969 1.376037 GAAGCCCGGGAAGTGAGTG 60.376 63.158 29.31 0.00 0.00 3.51
3803 3970 1.827399 GAAGCCCGGGAAGTGAGTGA 61.827 60.000 29.31 0.00 0.00 3.41
3804 3971 1.415672 AAGCCCGGGAAGTGAGTGAA 61.416 55.000 29.31 0.00 0.00 3.18
3805 3972 1.671379 GCCCGGGAAGTGAGTGAAC 60.671 63.158 29.31 0.00 0.00 3.18
3806 3973 1.003718 CCCGGGAAGTGAGTGAACC 60.004 63.158 18.48 0.00 0.00 3.62
3807 3974 1.003718 CCGGGAAGTGAGTGAACCC 60.004 63.158 0.00 0.00 37.42 4.11
3808 3975 4.695560 GGGAAGTGAGTGAACCCG 57.304 61.111 0.00 0.00 0.00 5.28
3809 3976 1.003718 GGGAAGTGAGTGAACCCGG 60.004 63.158 0.00 0.00 0.00 5.73
3810 3977 1.003718 GGAAGTGAGTGAACCCGGG 60.004 63.158 22.25 22.25 0.00 5.73
3811 3978 1.477685 GGAAGTGAGTGAACCCGGGA 61.478 60.000 32.02 0.04 0.00 5.14
3869 4809 3.228749 CTGCTGTGTTGCGTCAATTAAG 58.771 45.455 0.00 0.00 35.36 1.85
3873 4813 4.466828 CTGTGTTGCGTCAATTAAGAAGG 58.533 43.478 0.00 0.00 0.00 3.46
3875 4815 3.252458 GTGTTGCGTCAATTAAGAAGGGT 59.748 43.478 0.00 0.00 0.00 4.34
3876 4816 3.500680 TGTTGCGTCAATTAAGAAGGGTC 59.499 43.478 0.00 0.00 0.00 4.46
3877 4817 2.343101 TGCGTCAATTAAGAAGGGTCG 58.657 47.619 0.00 0.00 0.00 4.79
3878 4818 2.028839 TGCGTCAATTAAGAAGGGTCGA 60.029 45.455 0.00 0.00 0.00 4.20
3879 4819 2.603560 GCGTCAATTAAGAAGGGTCGAG 59.396 50.000 0.00 0.00 0.00 4.04
3881 4821 3.532542 GTCAATTAAGAAGGGTCGAGGG 58.467 50.000 0.00 0.00 0.00 4.30
3882 4822 2.093128 TCAATTAAGAAGGGTCGAGGGC 60.093 50.000 0.00 0.00 0.00 5.19
3901 4841 1.487976 GCAGTTGATGAGGGAGGATGA 59.512 52.381 0.00 0.00 0.00 2.92
3906 4846 0.965439 GATGAGGGAGGATGAGGACG 59.035 60.000 0.00 0.00 0.00 4.79
3921 4861 1.203075 AGGACGAGGAGAAGTGAAGGT 60.203 52.381 0.00 0.00 0.00 3.50
3928 4868 4.127907 GAGGAGAAGTGAAGGTTTTCGTT 58.872 43.478 0.00 0.00 36.04 3.85
3929 4869 3.877508 AGGAGAAGTGAAGGTTTTCGTTG 59.122 43.478 0.00 0.00 36.04 4.10
3939 4879 2.686405 AGGTTTTCGTTGGGACAGAAAC 59.314 45.455 0.00 0.00 42.39 2.78
3941 4881 1.301423 TTTCGTTGGGACAGAAACGG 58.699 50.000 7.94 0.00 46.90 4.44
3942 4882 0.464870 TTCGTTGGGACAGAAACGGA 59.535 50.000 7.94 0.00 46.90 4.69
3945 4885 1.797025 GTTGGGACAGAAACGGAGAG 58.203 55.000 0.00 0.00 42.39 3.20
3947 4887 1.257743 TGGGACAGAAACGGAGAGAG 58.742 55.000 0.00 0.00 0.00 3.20
3949 4889 1.202817 GGGACAGAAACGGAGAGAGAC 59.797 57.143 0.00 0.00 0.00 3.36
3952 4892 2.296471 GACAGAAACGGAGAGAGACCAA 59.704 50.000 0.00 0.00 0.00 3.67
3957 4897 2.751166 ACGGAGAGAGACCAAACATG 57.249 50.000 0.00 0.00 0.00 3.21
3961 4901 2.266554 GAGAGAGACCAAACATGCTCG 58.733 52.381 0.00 0.00 32.80 5.03
3963 4903 2.037772 AGAGAGACCAAACATGCTCGTT 59.962 45.455 0.00 0.00 32.80 3.85
4101 8822 2.783275 CATGTGCTGCTGCGTCTC 59.217 61.111 11.21 2.53 43.34 3.36
4102 8823 2.812609 ATGTGCTGCTGCGTCTCG 60.813 61.111 11.21 0.00 43.34 4.04
4107 8828 3.108289 CTGCTGCGTCTCGGTGTG 61.108 66.667 0.00 0.00 0.00 3.82
4108 8829 3.848347 CTGCTGCGTCTCGGTGTGT 62.848 63.158 0.00 0.00 0.00 3.72
4109 8830 3.406361 GCTGCGTCTCGGTGTGTG 61.406 66.667 0.00 0.00 0.00 3.82
4110 8831 2.734723 CTGCGTCTCGGTGTGTGG 60.735 66.667 0.00 0.00 0.00 4.17
4111 8832 3.207547 CTGCGTCTCGGTGTGTGGA 62.208 63.158 0.00 0.00 0.00 4.02
4112 8833 2.733593 GCGTCTCGGTGTGTGGAC 60.734 66.667 0.00 0.00 0.00 4.02
4113 8834 2.725641 CGTCTCGGTGTGTGGACA 59.274 61.111 0.00 0.00 0.00 4.02
4165 8886 4.443034 GGGTAAGAGCGATCAAGTATGGTT 60.443 45.833 2.38 0.00 0.00 3.67
4173 8894 4.617645 GCGATCAAGTATGGTTCGAGATAC 59.382 45.833 0.00 4.09 35.78 2.24
4182 8903 1.541233 GGTTCGAGATACTGCATGGGG 60.541 57.143 0.00 0.00 0.00 4.96
4210 8931 5.069516 GGATCTACCAAACCATCAATGCAAT 59.930 40.000 0.00 0.00 38.79 3.56
4301 9043 6.650807 CCTACTGCTTGATTCTGAAACTAACA 59.349 38.462 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.892063 ACGTTTGGTTTGGTGCAGTT 59.108 45.000 0.00 0.00 0.00 3.16
18 19 0.099791 AGCAACGACGTTTGGTTTGG 59.900 50.000 11.24 0.00 33.38 3.28
46 47 4.373116 GAGAACAGGACGGGCGCA 62.373 66.667 10.83 0.00 0.00 6.09
58 59 2.237643 GGAAAGGAGGAGGAAGGAGAAC 59.762 54.545 0.00 0.00 0.00 3.01
143 145 3.739703 CAGCCATGCCTATCCACAT 57.260 52.632 0.00 0.00 0.00 3.21
188 190 0.462375 TTGCTGTATGCGGTACCGAT 59.538 50.000 37.62 26.53 46.63 4.18
207 209 2.102578 GCCCATTGTTGCAGGAACTAT 58.897 47.619 6.35 0.98 36.02 2.12
208 210 1.544724 GCCCATTGTTGCAGGAACTA 58.455 50.000 6.35 0.00 36.02 2.24
224 226 2.738139 GCCATTGCAACAACGCCC 60.738 61.111 0.00 0.00 37.47 6.13
264 266 4.933505 TCCAACAAAGAACATGATGCAA 57.066 36.364 0.00 0.00 0.00 4.08
312 314 4.805744 TCCTACCTCTTCTCTGTATTCCC 58.194 47.826 0.00 0.00 0.00 3.97
332 334 6.194796 TGCAAAATTTACAGTAGCATCTCC 57.805 37.500 0.00 0.00 0.00 3.71
365 368 7.751768 ACCTCTTCTTTGTATTCTTCCAAAG 57.248 36.000 5.92 5.92 45.63 2.77
540 555 3.492482 CCGGTTGCAAAATTTGTTCTCCT 60.492 43.478 0.00 0.00 0.00 3.69
560 575 4.122776 CTCATTCCTACAACAAGATCCCG 58.877 47.826 0.00 0.00 0.00 5.14
573 588 4.706476 CCCTTGTTGCAAATCTCATTCCTA 59.294 41.667 0.00 0.00 0.00 2.94
631 647 1.396648 CGTTCAATTGTATGGCGAGCA 59.603 47.619 5.13 0.00 0.00 4.26
646 664 1.890041 CCGCCTCACAAACCGTTCA 60.890 57.895 0.00 0.00 0.00 3.18
648 666 3.284449 GCCGCCTCACAAACCGTT 61.284 61.111 0.00 0.00 0.00 4.44
657 675 1.040893 TAGAAAGATCCGCCGCCTCA 61.041 55.000 0.00 0.00 0.00 3.86
713 731 8.478066 AGTCTTTGATTTAAGAAGCCTTTTGTT 58.522 29.630 0.00 0.00 36.01 2.83
714 732 8.011844 AGTCTTTGATTTAAGAAGCCTTTTGT 57.988 30.769 0.00 0.00 36.01 2.83
715 733 8.877808 AAGTCTTTGATTTAAGAAGCCTTTTG 57.122 30.769 0.00 0.00 36.01 2.44
716 734 9.890629 AAAAGTCTTTGATTTAAGAAGCCTTTT 57.109 25.926 0.00 0.00 35.44 2.27
717 735 9.890629 AAAAAGTCTTTGATTTAAGAAGCCTTT 57.109 25.926 0.00 0.00 36.01 3.11
774 793 8.727910 GGACGACCATAAGATTAGTTTCTTTTT 58.272 33.333 0.00 0.00 35.49 1.94
778 797 5.589192 CGGACGACCATAAGATTAGTTTCT 58.411 41.667 4.48 0.00 35.59 2.52
779 798 4.208666 GCGGACGACCATAAGATTAGTTTC 59.791 45.833 4.48 0.00 35.59 2.78
788 810 0.108329 AACAGGCGGACGACCATAAG 60.108 55.000 4.48 0.00 35.59 1.73
820 842 6.518493 CAAATGGGCAATGAATATACTTGCT 58.482 36.000 13.37 0.00 43.65 3.91
823 845 5.221702 GGGCAAATGGGCAATGAATATACTT 60.222 40.000 0.00 0.00 45.66 2.24
824 846 4.284234 GGGCAAATGGGCAATGAATATACT 59.716 41.667 0.00 0.00 45.66 2.12
872 910 6.834107 ACTGTTTTCTACTTTAGGTTGCCTA 58.166 36.000 0.00 0.00 34.61 3.93
1285 1334 1.136336 CGCGAGTAAAAAGGACACAGC 60.136 52.381 0.00 0.00 0.00 4.40
1324 1374 5.413833 ACAGGAAGCACAGATTTTATCACAG 59.586 40.000 0.00 0.00 0.00 3.66
1334 1384 5.625150 AGAAACTAAACAGGAAGCACAGAT 58.375 37.500 0.00 0.00 0.00 2.90
1386 1436 3.796178 CGGGTTTCAATGTGTGACAAAAG 59.204 43.478 0.00 0.00 35.39 2.27
1417 1467 6.537355 AGAACTCTGAGAAAATCATGGTGAA 58.463 36.000 12.44 0.00 37.28 3.18
1505 1564 1.268079 GAAAGAGTTCTGCACCAAGGC 59.732 52.381 0.00 0.00 0.00 4.35
1511 1570 2.664085 GCTAGTCGAAAGAGTTCTGCAC 59.336 50.000 0.32 0.00 42.17 4.57
1544 1605 1.002142 GGGTTTTGTGCTACCAACGTC 60.002 52.381 0.00 0.00 36.10 4.34
1545 1606 1.026584 GGGTTTTGTGCTACCAACGT 58.973 50.000 0.00 0.00 36.10 3.99
1579 1640 3.855689 ATGCAATGTTCCACTTGTAGC 57.144 42.857 0.00 0.00 0.00 3.58
1582 1643 5.726980 ACAATATGCAATGTTCCACTTGT 57.273 34.783 0.00 0.00 0.00 3.16
1780 1842 7.865385 TGTAATCAAGTTTTATCCTGCAACAAC 59.135 33.333 0.00 0.00 0.00 3.32
1968 2054 7.119116 CGCTTGATGGGCTTAATGTATGTTATA 59.881 37.037 0.00 0.00 0.00 0.98
2047 2133 4.147321 CTGATAAGGTGGCCATGCTAAAT 58.853 43.478 9.72 0.00 0.00 1.40
2057 2143 2.104792 TGCTATGTCCTGATAAGGTGGC 59.895 50.000 0.00 0.00 0.00 5.01
2083 2169 6.702329 TGTTACAAACCAAACAAGGTCAATT 58.298 32.000 0.00 0.00 42.25 2.32
2099 2185 5.732170 TCCTATATGGGGTCCTTGTTACAAA 59.268 40.000 5.12 0.00 36.20 2.83
2119 2205 2.820178 TCTGGTCATGCTTCTGTCCTA 58.180 47.619 0.00 0.00 0.00 2.94
2210 2296 6.437928 TGAATATTCAATGTGCCGCTTATTC 58.562 36.000 15.82 0.00 33.55 1.75
2355 2441 3.446799 GCATCACAAACAAAGACAGCAA 58.553 40.909 0.00 0.00 0.00 3.91
2505 2591 3.267483 CCATATTCGACAAAGGACCGTT 58.733 45.455 0.00 0.00 0.00 4.44
2507 2593 2.210116 CCCATATTCGACAAAGGACCG 58.790 52.381 0.00 0.00 0.00 4.79
2698 2784 8.131100 CACTATTCACACACAAAGAACTGAATT 58.869 33.333 0.00 0.00 32.15 2.17
2699 2785 7.283127 ACACTATTCACACACAAAGAACTGAAT 59.717 33.333 0.00 0.00 33.85 2.57
2812 2902 4.803088 TGCAGAAAAACAAATGTAGTGCAC 59.197 37.500 9.40 9.40 33.65 4.57
2813 2903 5.003692 TGCAGAAAAACAAATGTAGTGCA 57.996 34.783 0.00 0.00 36.11 4.57
2817 2907 6.634436 GTCAGTCTGCAGAAAAACAAATGTAG 59.366 38.462 20.19 0.00 0.00 2.74
2818 2908 6.318648 AGTCAGTCTGCAGAAAAACAAATGTA 59.681 34.615 20.19 0.00 0.00 2.29
2819 2909 5.126061 AGTCAGTCTGCAGAAAAACAAATGT 59.874 36.000 20.19 0.00 0.00 2.71
2820 2910 5.457799 CAGTCAGTCTGCAGAAAAACAAATG 59.542 40.000 20.19 4.06 37.36 2.32
2859 2950 2.083774 CAAATTGCAGAGTTAGCGGGA 58.916 47.619 0.00 0.00 33.85 5.14
2866 2957 8.416329 GGGTAATTATCATCAAATTGCAGAGTT 58.584 33.333 0.00 0.00 32.52 3.01
2870 2961 7.980662 TGTTGGGTAATTATCATCAAATTGCAG 59.019 33.333 0.00 0.00 32.52 4.41
2947 3038 5.416013 CGATAGGCATACTACTCCAGAATCA 59.584 44.000 0.00 0.00 33.70 2.57
2958 3049 4.948004 CACCCAGTATCGATAGGCATACTA 59.052 45.833 5.09 0.00 34.63 1.82
2974 3065 6.321690 GTCAGTCTATACTTACATCACCCAGT 59.678 42.308 0.00 0.00 31.97 4.00
2986 3077 8.196378 AGGAAAGTTTCAGTCAGTCTATACTT 57.804 34.615 17.16 0.00 31.97 2.24
2990 3081 5.703130 GCAAGGAAAGTTTCAGTCAGTCTAT 59.297 40.000 17.16 0.00 0.00 1.98
3035 3126 1.130054 AGCGGGGATATCAGCATGGT 61.130 55.000 15.97 0.00 36.16 3.55
3036 3127 0.675837 CAGCGGGGATATCAGCATGG 60.676 60.000 15.97 5.10 36.16 3.66
3037 3128 0.322648 TCAGCGGGGATATCAGCATG 59.677 55.000 15.97 11.88 37.54 4.06
3038 3129 1.209019 GATCAGCGGGGATATCAGCAT 59.791 52.381 15.97 5.24 0.00 3.79
3039 3130 0.610174 GATCAGCGGGGATATCAGCA 59.390 55.000 15.97 1.36 0.00 4.41
3040 3131 0.901124 AGATCAGCGGGGATATCAGC 59.099 55.000 4.83 6.98 0.00 4.26
3041 3132 3.007290 TGAAAGATCAGCGGGGATATCAG 59.993 47.826 4.83 0.00 0.00 2.90
3042 3133 2.972021 TGAAAGATCAGCGGGGATATCA 59.028 45.455 4.83 0.00 0.00 2.15
3043 3134 3.685139 TGAAAGATCAGCGGGGATATC 57.315 47.619 0.00 0.00 0.00 1.63
3083 3174 2.673775 TTGAAGGTTTCCATGCCTGA 57.326 45.000 0.00 0.00 34.90 3.86
3143 3234 4.455606 CTGAGTTAGGATTTGGGTCATCC 58.544 47.826 0.00 0.00 40.72 3.51
3197 3288 8.319881 AGGTTCTAGTTATGGAAACTAACCTTC 58.680 37.037 14.88 0.88 41.72 3.46
3205 3296 7.148289 GGTTAAGCAGGTTCTAGTTATGGAAAC 60.148 40.741 0.00 0.00 33.97 2.78
3206 3297 6.882678 GGTTAAGCAGGTTCTAGTTATGGAAA 59.117 38.462 0.00 0.00 0.00 3.13
3211 3302 6.869206 TCAGGTTAAGCAGGTTCTAGTTAT 57.131 37.500 7.52 0.00 0.00 1.89
3222 3313 1.796796 GCGCCTTCAGGTTAAGCAG 59.203 57.895 7.52 0.00 37.57 4.24
3231 3322 0.721718 CTAAGGAAACGCGCCTTCAG 59.278 55.000 18.09 11.14 44.34 3.02
3239 3330 6.839033 AGCTGTATTAAAACTAAGGAAACGC 58.161 36.000 0.00 0.00 0.00 4.84
3243 3334 9.456147 TTGCATAGCTGTATTAAAACTAAGGAA 57.544 29.630 0.00 0.00 0.00 3.36
3264 3356 2.592102 ACAGGGTGAGTCAATTGCAT 57.408 45.000 0.00 0.00 0.00 3.96
3268 3360 4.466015 ACAAACAAACAGGGTGAGTCAATT 59.534 37.500 0.00 0.00 0.00 2.32
3269 3361 4.023291 ACAAACAAACAGGGTGAGTCAAT 58.977 39.130 0.00 0.00 0.00 2.57
3272 3366 2.752903 ACACAAACAAACAGGGTGAGTC 59.247 45.455 0.00 0.00 33.82 3.36
3275 3369 2.096248 GGACACAAACAAACAGGGTGA 58.904 47.619 0.00 0.00 33.82 4.02
3277 3371 1.099689 CGGACACAAACAAACAGGGT 58.900 50.000 0.00 0.00 0.00 4.34
3342 3436 2.264794 CGAAGGGTAGCGCTTGGT 59.735 61.111 18.68 0.00 36.78 3.67
3372 3466 9.347934 GCACACTAATATTATGCACTACTAGAG 57.652 37.037 12.57 0.00 36.30 2.43
3373 3467 8.856103 TGCACACTAATATTATGCACTACTAGA 58.144 33.333 15.14 0.00 41.18 2.43
3391 3507 1.072489 TCCCCAACGAAATGCACACTA 59.928 47.619 0.00 0.00 0.00 2.74
3395 3511 0.240945 CAGTCCCCAACGAAATGCAC 59.759 55.000 0.00 0.00 0.00 4.57
3403 3519 2.164624 CTCTAGACTTCAGTCCCCAACG 59.835 54.545 3.20 0.00 45.85 4.10
3405 3521 3.544698 ACTCTAGACTTCAGTCCCCAA 57.455 47.619 3.20 0.00 45.85 4.12
3407 3523 2.093921 GCAACTCTAGACTTCAGTCCCC 60.094 54.545 3.20 0.00 45.85 4.81
3410 3531 2.255316 GCGCAACTCTAGACTTCAGTC 58.745 52.381 0.30 0.00 45.08 3.51
3420 3541 2.582226 CATCGCGGCGCAACTCTA 60.582 61.111 32.61 9.52 0.00 2.43
3431 3552 0.249322 CTAACTACACCCCCATCGCG 60.249 60.000 0.00 0.00 0.00 5.87
3442 3563 3.056393 ACACTACCATTGCGCTAACTACA 60.056 43.478 9.73 0.00 0.00 2.74
3596 3725 7.032598 AGGAATCACTTGGAAGAAAAGGATA 57.967 36.000 0.00 0.00 0.00 2.59
3644 3778 0.464036 CCGATCCGACCCATCTTTCA 59.536 55.000 0.00 0.00 0.00 2.69
3662 3796 3.430790 GCCTAACTTCAATCATTTGGGCC 60.431 47.826 0.00 0.00 30.75 5.80
3784 3951 1.376037 CACTCACTTCCCGGGCTTC 60.376 63.158 18.49 0.00 0.00 3.86
3795 3962 0.763223 ACTTCCCGGGTTCACTCACT 60.763 55.000 22.86 0.00 0.00 3.41
3796 3963 0.971386 TACTTCCCGGGTTCACTCAC 59.029 55.000 22.86 0.00 0.00 3.51
3797 3964 1.719529 TTACTTCCCGGGTTCACTCA 58.280 50.000 22.86 0.00 0.00 3.41
3798 3965 2.845363 TTTACTTCCCGGGTTCACTC 57.155 50.000 22.86 0.00 0.00 3.51
3799 3966 3.581265 TTTTTACTTCCCGGGTTCACT 57.419 42.857 22.86 2.13 0.00 3.41
3800 3967 4.142534 GCTATTTTTACTTCCCGGGTTCAC 60.143 45.833 22.86 0.00 0.00 3.18
3801 3968 4.011698 GCTATTTTTACTTCCCGGGTTCA 58.988 43.478 22.86 4.87 0.00 3.18
3802 3969 3.379372 GGCTATTTTTACTTCCCGGGTTC 59.621 47.826 22.86 0.00 0.00 3.62
3803 3970 3.010920 AGGCTATTTTTACTTCCCGGGTT 59.989 43.478 22.86 8.91 0.00 4.11
3804 3971 2.579400 AGGCTATTTTTACTTCCCGGGT 59.421 45.455 22.86 3.24 0.00 5.28
3805 3972 3.118000 AGAGGCTATTTTTACTTCCCGGG 60.118 47.826 16.85 16.85 0.00 5.73
3806 3973 4.127907 GAGAGGCTATTTTTACTTCCCGG 58.872 47.826 0.00 0.00 0.00 5.73
3807 3974 3.802685 CGAGAGGCTATTTTTACTTCCCG 59.197 47.826 0.00 0.00 0.00 5.14
3808 3975 3.560481 GCGAGAGGCTATTTTTACTTCCC 59.440 47.826 0.00 0.00 39.11 3.97
3809 3976 4.797693 GCGAGAGGCTATTTTTACTTCC 57.202 45.455 0.00 0.00 39.11 3.46
3869 4809 1.376037 CAACTGCCCTCGACCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
3873 4813 0.460987 CTCATCAACTGCCCTCGACC 60.461 60.000 0.00 0.00 0.00 4.79
3875 4815 1.617018 CCCTCATCAACTGCCCTCGA 61.617 60.000 0.00 0.00 0.00 4.04
3876 4816 1.153289 CCCTCATCAACTGCCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
3877 4817 0.179936 CTCCCTCATCAACTGCCCTC 59.820 60.000 0.00 0.00 0.00 4.30
3878 4818 1.277580 CCTCCCTCATCAACTGCCCT 61.278 60.000 0.00 0.00 0.00 5.19
3879 4819 1.225704 CCTCCCTCATCAACTGCCC 59.774 63.158 0.00 0.00 0.00 5.36
3881 4821 1.487976 TCATCCTCCCTCATCAACTGC 59.512 52.381 0.00 0.00 0.00 4.40
3882 4822 2.104451 CCTCATCCTCCCTCATCAACTG 59.896 54.545 0.00 0.00 0.00 3.16
3901 4841 1.203075 ACCTTCACTTCTCCTCGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
3906 4846 3.729966 ACGAAAACCTTCACTTCTCCTC 58.270 45.455 0.00 0.00 0.00 3.71
3928 4868 1.203013 TCTCTCTCCGTTTCTGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
3929 4869 1.202817 GTCTCTCTCCGTTTCTGTCCC 59.797 57.143 0.00 0.00 0.00 4.46
3939 4879 1.066573 AGCATGTTTGGTCTCTCTCCG 60.067 52.381 0.00 0.00 0.00 4.63
3940 4880 2.626840 GAGCATGTTTGGTCTCTCTCC 58.373 52.381 0.00 0.00 45.02 3.71
3941 4881 2.266554 CGAGCATGTTTGGTCTCTCTC 58.733 52.381 0.00 0.00 46.01 3.20
3942 4882 1.620819 ACGAGCATGTTTGGTCTCTCT 59.379 47.619 1.52 0.00 46.01 3.10
3957 4897 4.168014 TGAATTCAATGCATCAAACGAGC 58.832 39.130 5.45 0.00 0.00 5.03
3961 4901 6.154445 ACAGTCTGAATTCAATGCATCAAAC 58.846 36.000 9.88 0.00 0.00 2.93
3963 4903 5.106038 GGACAGTCTGAATTCAATGCATCAA 60.106 40.000 9.88 0.00 0.00 2.57
4027 4967 2.105128 GCTCCCGTCCGTCATGAG 59.895 66.667 0.00 0.00 0.00 2.90
4059 8751 3.223589 GCGTGCCCCCACAACTTT 61.224 61.111 0.00 0.00 42.17 2.66
4097 8818 4.338327 GTGTCCACACACCGAGAC 57.662 61.111 4.92 0.00 46.49 3.36
4110 8831 3.991536 GAAGAGAGCGGCCCGTGTC 62.992 68.421 4.45 1.77 0.00 3.67
4111 8832 4.070552 GAAGAGAGCGGCCCGTGT 62.071 66.667 4.45 0.00 0.00 4.49
4112 8833 3.708220 GAGAAGAGAGCGGCCCGTG 62.708 68.421 4.45 0.00 0.00 4.94
4113 8834 3.453679 GAGAAGAGAGCGGCCCGT 61.454 66.667 4.45 0.00 0.00 5.28
4114 8835 2.232298 AAAGAGAAGAGAGCGGCCCG 62.232 60.000 0.00 0.00 0.00 6.13
4115 8836 0.742635 CAAAGAGAAGAGAGCGGCCC 60.743 60.000 0.00 0.00 0.00 5.80
4116 8837 1.365368 GCAAAGAGAAGAGAGCGGCC 61.365 60.000 0.00 0.00 0.00 6.13
4117 8838 0.671781 TGCAAAGAGAAGAGAGCGGC 60.672 55.000 0.00 0.00 0.00 6.53
4118 8839 1.337635 ACTGCAAAGAGAAGAGAGCGG 60.338 52.381 0.00 0.00 34.68 5.52
4119 8840 2.077413 ACTGCAAAGAGAAGAGAGCG 57.923 50.000 0.00 0.00 0.00 5.03
4120 8841 3.397482 TGAACTGCAAAGAGAAGAGAGC 58.603 45.455 0.00 0.00 0.00 4.09
4121 8842 3.995705 CCTGAACTGCAAAGAGAAGAGAG 59.004 47.826 0.00 0.00 0.00 3.20
4122 8843 3.244353 CCCTGAACTGCAAAGAGAAGAGA 60.244 47.826 0.00 0.00 0.00 3.10
4165 8886 1.788229 TTCCCCATGCAGTATCTCGA 58.212 50.000 0.00 0.00 0.00 4.04
4173 8894 2.487986 GGTAGATCCTTTCCCCATGCAG 60.488 54.545 0.00 0.00 0.00 4.41
4182 8903 6.681368 GCATTGATGGTTTGGTAGATCCTTTC 60.681 42.308 0.00 0.00 37.07 2.62
4210 8931 5.733620 AGGTTAAATTCAGACGTCCTGTA 57.266 39.130 13.01 4.47 43.38 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.