Multiple sequence alignment - TraesCS2D01G392800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G392800 chr2D 100.000 8359 0 0 1 8359 500686830 500695188 0.000000e+00 15437.0
1 TraesCS2D01G392800 chr2D 96.499 714 20 4 1 712 436017630 436016920 0.000000e+00 1175.0
2 TraesCS2D01G392800 chr2D 95.506 712 28 3 1 710 368790056 368789347 0.000000e+00 1134.0
3 TraesCS2D01G392800 chr2D 95.346 709 27 4 1 707 648276747 648276043 0.000000e+00 1122.0
4 TraesCS2D01G392800 chr2D 87.448 725 57 16 5266 5957 607135045 607135768 0.000000e+00 804.0
5 TraesCS2D01G392800 chr2D 87.640 712 58 5 5274 5956 610488140 610487430 0.000000e+00 800.0
6 TraesCS2D01G392800 chr2D 86.421 707 64 6 5262 5936 31735181 31734475 0.000000e+00 745.0
7 TraesCS2D01G392800 chr2D 88.520 392 37 8 7909 8296 512182691 512182304 1.270000e-127 468.0
8 TraesCS2D01G392800 chr2D 94.792 96 3 2 3128 3222 638846166 638846072 1.880000e-31 148.0
9 TraesCS2D01G392800 chr2B 92.255 2040 95 26 3238 5263 588727719 588725729 0.000000e+00 2833.0
10 TraesCS2D01G392800 chr2B 92.220 1748 72 25 5960 7661 588725735 588724006 0.000000e+00 2416.0
11 TraesCS2D01G392800 chr2B 93.068 1255 45 16 1246 2490 588730131 588728909 0.000000e+00 1797.0
12 TraesCS2D01G392800 chr2B 93.939 528 19 7 734 1252 588730683 588730160 0.000000e+00 785.0
13 TraesCS2D01G392800 chr2B 85.773 724 68 13 5266 5957 579566489 579567209 0.000000e+00 734.0
14 TraesCS2D01G392800 chr2B 95.150 433 17 3 2487 2916 588728653 588728222 0.000000e+00 680.0
15 TraesCS2D01G392800 chr2B 91.743 109 7 1 3110 3216 43275152 43275260 5.230000e-32 150.0
16 TraesCS2D01G392800 chr2A 90.557 1758 96 18 5977 7682 646622725 646620986 0.000000e+00 2263.0
17 TraesCS2D01G392800 chr2A 96.872 1023 24 4 734 1754 646628064 646627048 0.000000e+00 1705.0
18 TraesCS2D01G392800 chr2A 94.881 586 26 3 3872 4457 646624375 646623794 0.000000e+00 913.0
19 TraesCS2D01G392800 chr2A 89.610 616 44 12 2379 2975 646625874 646625260 0.000000e+00 765.0
20 TraesCS2D01G392800 chr2A 88.057 561 43 12 3257 3799 646624921 646624367 1.970000e-180 643.0
21 TraesCS2D01G392800 chr2A 82.386 721 96 21 4519 5224 646623433 646622729 4.320000e-167 599.0
22 TraesCS2D01G392800 chr2A 88.223 467 38 13 1880 2336 646626331 646625872 7.380000e-150 542.0
23 TraesCS2D01G392800 chr2A 91.845 233 17 1 7679 7911 646620936 646620706 2.910000e-84 324.0
24 TraesCS2D01G392800 chr2A 79.638 221 35 4 4519 4731 229669635 229669853 5.230000e-32 150.0
25 TraesCS2D01G392800 chr2A 90.566 106 5 4 3107 3212 686840764 686840864 1.460000e-27 135.0
26 TraesCS2D01G392800 chr3D 96.353 713 23 2 1 712 355421000 355421710 0.000000e+00 1170.0
27 TraesCS2D01G392800 chr3D 95.346 709 29 3 1 707 578244409 578243703 0.000000e+00 1123.0
28 TraesCS2D01G392800 chr3D 86.732 716 65 5 5274 5960 587539900 587539186 0.000000e+00 769.0
29 TraesCS2D01G392800 chr3D 86.011 722 68 12 5266 5954 166938511 166939232 0.000000e+00 743.0
30 TraesCS2D01G392800 chr3D 85.359 724 73 19 5266 5960 355617208 355616489 0.000000e+00 719.0
31 TraesCS2D01G392800 chr3D 89.514 391 36 5 7909 8296 590228344 590228732 2.710000e-134 490.0
32 TraesCS2D01G392800 chr3D 89.514 391 33 8 7910 8296 590228738 590229124 9.750000e-134 488.0
33 TraesCS2D01G392800 chr3D 88.974 390 39 4 7910 8296 574065708 574065320 5.870000e-131 479.0
34 TraesCS2D01G392800 chr3D 93.750 96 6 0 3121 3216 400749604 400749699 2.430000e-30 145.0
35 TraesCS2D01G392800 chr7D 96.192 709 23 3 1 707 160017136 160016430 0.000000e+00 1157.0
36 TraesCS2D01G392800 chr7D 94.818 714 33 3 1 712 379066085 379066796 0.000000e+00 1110.0
37 TraesCS2D01G392800 chr7D 91.582 392 29 4 7910 8297 99616329 99616720 9.550000e-149 538.0
38 TraesCS2D01G392800 chr7D 92.391 92 7 0 3128 3219 25410718 25410809 1.890000e-26 132.0
39 TraesCS2D01G392800 chr7D 86.170 94 12 1 4519 4612 570455911 570455819 5.340000e-17 100.0
40 TraesCS2D01G392800 chr4D 95.339 708 29 3 1 707 415909804 415910508 0.000000e+00 1122.0
41 TraesCS2D01G392800 chr4D 88.227 722 49 11 5266 5955 101655180 101654463 0.000000e+00 830.0
42 TraesCS2D01G392800 chr4D 86.852 540 43 16 5274 5785 490882012 490881473 5.630000e-161 579.0
43 TraesCS2D01G392800 chr4D 79.752 242 41 7 7108 7345 498576152 498576389 1.440000e-37 169.0
44 TraesCS2D01G392800 chr4D 82.400 125 15 7 4519 4640 484084405 484084525 1.480000e-17 102.0
45 TraesCS2D01G392800 chr4A 94.774 708 34 2 1 707 594278374 594277669 0.000000e+00 1099.0
46 TraesCS2D01G392800 chrUn 87.640 712 58 5 5274 5956 398593269 398592559 0.000000e+00 800.0
47 TraesCS2D01G392800 chr3A 87.034 725 60 15 5266 5957 444720819 444720096 0.000000e+00 787.0
48 TraesCS2D01G392800 chr3A 89.394 396 32 8 7911 8301 700606825 700606435 2.710000e-134 490.0
49 TraesCS2D01G392800 chr7A 87.097 713 61 13 5274 5957 8423892 8424602 0.000000e+00 778.0
50 TraesCS2D01G392800 chr7A 86.464 724 66 7 5266 5957 53730954 53731677 0.000000e+00 765.0
51 TraesCS2D01G392800 chr1D 87.183 710 59 16 5274 5952 22880961 22881669 0.000000e+00 778.0
52 TraesCS2D01G392800 chr1D 91.362 301 24 1 5266 5564 96934062 96933762 2.170000e-110 411.0
53 TraesCS2D01G392800 chr1D 91.333 300 25 1 5266 5564 5413335 5413036 7.810000e-110 409.0
54 TraesCS2D01G392800 chr4B 89.086 394 36 7 7910 8297 642966092 642966484 4.540000e-132 483.0
55 TraesCS2D01G392800 chr4B 79.424 243 40 9 7108 7345 640536253 640536490 6.710000e-36 163.0
56 TraesCS2D01G392800 chr3B 89.114 395 28 13 7910 8296 650059164 650058777 2.110000e-130 477.0
57 TraesCS2D01G392800 chr3B 85.484 124 15 3 4519 4640 512741584 512741462 8.810000e-25 126.0
58 TraesCS2D01G392800 chr3B 96.875 32 1 0 2156 2187 728091634 728091603 4.000000e-03 54.7
59 TraesCS2D01G392800 chr7B 87.970 399 40 8 7905 8296 615788171 615788568 1.640000e-126 464.0
60 TraesCS2D01G392800 chr5D 92.359 301 22 1 5261 5560 353670057 353670357 2.160000e-115 427.0
61 TraesCS2D01G392800 chr5D 94.681 94 5 0 3128 3221 383306973 383306880 6.760000e-31 147.0
62 TraesCS2D01G392800 chr5A 78.099 242 45 7 7108 7345 679137582 679137819 6.760000e-31 147.0
63 TraesCS2D01G392800 chr6B 92.157 102 6 2 3121 3221 12465855 12465755 8.750000e-30 143.0
64 TraesCS2D01G392800 chr6B 90.385 104 8 2 3128 3229 462032316 462032213 1.460000e-27 135.0
65 TraesCS2D01G392800 chr1A 89.286 112 10 2 3127 3237 555691353 555691463 1.130000e-28 139.0
66 TraesCS2D01G392800 chr1A 86.916 107 11 3 4519 4624 339100220 339100324 5.300000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G392800 chr2D 500686830 500695188 8358 False 15437.00 15437 100.000000 1 8359 1 chr2D.!!$F1 8358
1 TraesCS2D01G392800 chr2D 436016920 436017630 710 True 1175.00 1175 96.499000 1 712 1 chr2D.!!$R3 711
2 TraesCS2D01G392800 chr2D 368789347 368790056 709 True 1134.00 1134 95.506000 1 710 1 chr2D.!!$R2 709
3 TraesCS2D01G392800 chr2D 648276043 648276747 704 True 1122.00 1122 95.346000 1 707 1 chr2D.!!$R7 706
4 TraesCS2D01G392800 chr2D 607135045 607135768 723 False 804.00 804 87.448000 5266 5957 1 chr2D.!!$F2 691
5 TraesCS2D01G392800 chr2D 610487430 610488140 710 True 800.00 800 87.640000 5274 5956 1 chr2D.!!$R5 682
6 TraesCS2D01G392800 chr2D 31734475 31735181 706 True 745.00 745 86.421000 5262 5936 1 chr2D.!!$R1 674
7 TraesCS2D01G392800 chr2B 588724006 588730683 6677 True 1702.20 2833 93.326400 734 7661 5 chr2B.!!$R1 6927
8 TraesCS2D01G392800 chr2B 579566489 579567209 720 False 734.00 734 85.773000 5266 5957 1 chr2B.!!$F2 691
9 TraesCS2D01G392800 chr2A 646620706 646628064 7358 True 969.25 2263 90.303875 734 7911 8 chr2A.!!$R1 7177
10 TraesCS2D01G392800 chr3D 355421000 355421710 710 False 1170.00 1170 96.353000 1 712 1 chr3D.!!$F2 711
11 TraesCS2D01G392800 chr3D 578243703 578244409 706 True 1123.00 1123 95.346000 1 707 1 chr3D.!!$R3 706
12 TraesCS2D01G392800 chr3D 587539186 587539900 714 True 769.00 769 86.732000 5274 5960 1 chr3D.!!$R4 686
13 TraesCS2D01G392800 chr3D 166938511 166939232 721 False 743.00 743 86.011000 5266 5954 1 chr3D.!!$F1 688
14 TraesCS2D01G392800 chr3D 355616489 355617208 719 True 719.00 719 85.359000 5266 5960 1 chr3D.!!$R1 694
15 TraesCS2D01G392800 chr3D 590228344 590229124 780 False 489.00 490 89.514000 7909 8296 2 chr3D.!!$F4 387
16 TraesCS2D01G392800 chr7D 160016430 160017136 706 True 1157.00 1157 96.192000 1 707 1 chr7D.!!$R1 706
17 TraesCS2D01G392800 chr7D 379066085 379066796 711 False 1110.00 1110 94.818000 1 712 1 chr7D.!!$F3 711
18 TraesCS2D01G392800 chr4D 415909804 415910508 704 False 1122.00 1122 95.339000 1 707 1 chr4D.!!$F1 706
19 TraesCS2D01G392800 chr4D 101654463 101655180 717 True 830.00 830 88.227000 5266 5955 1 chr4D.!!$R1 689
20 TraesCS2D01G392800 chr4D 490881473 490882012 539 True 579.00 579 86.852000 5274 5785 1 chr4D.!!$R2 511
21 TraesCS2D01G392800 chr4A 594277669 594278374 705 True 1099.00 1099 94.774000 1 707 1 chr4A.!!$R1 706
22 TraesCS2D01G392800 chrUn 398592559 398593269 710 True 800.00 800 87.640000 5274 5956 1 chrUn.!!$R1 682
23 TraesCS2D01G392800 chr3A 444720096 444720819 723 True 787.00 787 87.034000 5266 5957 1 chr3A.!!$R1 691
24 TraesCS2D01G392800 chr7A 8423892 8424602 710 False 778.00 778 87.097000 5274 5957 1 chr7A.!!$F1 683
25 TraesCS2D01G392800 chr7A 53730954 53731677 723 False 765.00 765 86.464000 5266 5957 1 chr7A.!!$F2 691
26 TraesCS2D01G392800 chr1D 22880961 22881669 708 False 778.00 778 87.183000 5274 5952 1 chr1D.!!$F1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 855 0.399949 TTGGTGGAGCTCCGGGATAT 60.400 55.000 27.43 0.0 39.43 1.63 F
2134 2784 0.320508 GGACCGAAACCAGTCACCTC 60.321 60.000 0.00 0.0 34.58 3.85 F
2201 2854 0.623723 ATGGGTTAACTCGCCATGGT 59.376 50.000 14.67 0.0 0.00 3.55 F
3589 4714 1.228033 CGCATCATCCCTGCATCCA 60.228 57.895 0.00 0.0 39.64 3.41 F
4867 6320 0.530870 GGCGCTAGTCTGGGTCAATC 60.531 60.000 7.64 0.0 0.00 2.67 F
5253 6716 0.037419 TCATGTTGCTAGCGCTGTGA 60.037 50.000 22.90 9.2 36.97 3.58 F
6154 7654 0.762418 TCCCCATGCGTCGGATAAAT 59.238 50.000 0.00 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2913 0.314302 ACCTCGTGGTCTTCGTTCTG 59.686 55.000 2.61 0.0 44.78 3.02 R
3932 5075 0.178975 TTCCCACCGCTCAAAACCAT 60.179 50.000 0.00 0.0 0.00 3.55 R
3933 5076 1.104577 GTTCCCACCGCTCAAAACCA 61.105 55.000 0.00 0.0 0.00 3.67 R
4896 6349 0.322187 GCCTCAAACCCACCGTACAT 60.322 55.000 0.00 0.0 0.00 2.29 R
6386 7894 0.037326 TCAGCAAACCTACGCTCTGG 60.037 55.000 0.00 0.0 35.96 3.86 R
6587 8111 1.002868 GCATGCACTCCACTCCACT 60.003 57.895 14.21 0.0 0.00 4.00 R
8069 9694 0.099082 TTGTTGTTTTCACCCGCGAC 59.901 50.000 8.23 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.034999 GGCAACATGTCCCCGGAA 59.965 61.111 0.73 0.00 0.00 4.30
120 121 1.379843 GGCAACATGTCCCCGGAAT 60.380 57.895 0.73 0.00 0.00 3.01
289 291 1.209747 ACGATAAAACCTCCCTGCTCC 59.790 52.381 0.00 0.00 0.00 4.70
290 292 1.209504 CGATAAAACCTCCCTGCTCCA 59.790 52.381 0.00 0.00 0.00 3.86
443 445 1.896220 ACACACGATGCCATCAACTT 58.104 45.000 5.40 0.00 0.00 2.66
458 460 1.940883 AACTTCGAGACGCCGCCATA 61.941 55.000 0.00 0.00 0.00 2.74
568 570 8.000127 ACCTACAAATCCAAAACCTAACTACAA 59.000 33.333 0.00 0.00 0.00 2.41
579 581 3.518303 ACCTAACTACAAAGCGGAGGAAT 59.482 43.478 0.00 0.00 0.00 3.01
589 591 2.044620 GGAGGAATGGGGTCCCCT 59.955 66.667 28.11 8.69 45.70 4.79
665 668 4.714308 ACTGAGATCGGAGGAAGAAAATCT 59.286 41.667 0.00 0.00 0.00 2.40
712 715 2.029307 GCTAGGGTAGGGAAGGCGTG 62.029 65.000 0.00 0.00 0.00 5.34
713 716 1.382146 TAGGGTAGGGAAGGCGTGG 60.382 63.158 0.00 0.00 0.00 4.94
714 717 4.484872 GGGTAGGGAAGGCGTGGC 62.485 72.222 0.00 0.00 0.00 5.01
715 718 4.832608 GGTAGGGAAGGCGTGGCG 62.833 72.222 0.00 0.00 0.00 5.69
716 719 4.078516 GTAGGGAAGGCGTGGCGT 62.079 66.667 0.00 0.00 0.00 5.68
717 720 3.766691 TAGGGAAGGCGTGGCGTC 61.767 66.667 0.82 0.82 0.00 5.19
719 722 4.778143 GGGAAGGCGTGGCGTCAT 62.778 66.667 11.06 0.00 32.13 3.06
720 723 2.185867 GGAAGGCGTGGCGTCATA 59.814 61.111 11.06 0.00 32.13 2.15
721 724 1.883084 GGAAGGCGTGGCGTCATAG 60.883 63.158 11.06 0.00 32.13 2.23
722 725 1.153628 GAAGGCGTGGCGTCATAGT 60.154 57.895 0.00 0.00 32.13 2.12
723 726 1.421410 GAAGGCGTGGCGTCATAGTG 61.421 60.000 0.00 0.00 32.13 2.74
724 727 2.852495 AAGGCGTGGCGTCATAGTGG 62.852 60.000 0.00 0.00 32.13 4.00
725 728 2.125673 GCGTGGCGTCATAGTGGT 60.126 61.111 0.00 0.00 0.00 4.16
726 729 1.740296 GCGTGGCGTCATAGTGGTT 60.740 57.895 0.00 0.00 0.00 3.67
727 730 1.296056 GCGTGGCGTCATAGTGGTTT 61.296 55.000 0.00 0.00 0.00 3.27
728 731 1.999048 CGTGGCGTCATAGTGGTTTA 58.001 50.000 0.00 0.00 0.00 2.01
729 732 2.546778 CGTGGCGTCATAGTGGTTTAT 58.453 47.619 0.00 0.00 0.00 1.40
730 733 2.284150 CGTGGCGTCATAGTGGTTTATG 59.716 50.000 0.00 0.00 33.30 1.90
731 734 3.527533 GTGGCGTCATAGTGGTTTATGA 58.472 45.455 0.00 0.00 37.63 2.15
826 829 2.594962 GGCCGGATATCAACGTGCG 61.595 63.158 5.05 0.00 0.00 5.34
848 855 0.399949 TTGGTGGAGCTCCGGGATAT 60.400 55.000 27.43 0.00 39.43 1.63
849 856 0.485543 TGGTGGAGCTCCGGGATATA 59.514 55.000 27.43 5.35 39.43 0.86
850 857 1.078823 TGGTGGAGCTCCGGGATATAT 59.921 52.381 27.43 0.00 39.43 0.86
851 858 2.313643 TGGTGGAGCTCCGGGATATATA 59.686 50.000 27.43 3.73 39.43 0.86
852 859 2.694109 GGTGGAGCTCCGGGATATATAC 59.306 54.545 27.43 15.87 39.43 1.47
918 925 2.579738 GGCCTCACCGAGTCTTCC 59.420 66.667 0.00 0.00 0.00 3.46
1237 1251 0.890683 CATGCCCTTGGTTCTGTTCC 59.109 55.000 0.00 0.00 0.00 3.62
1303 1352 2.098443 GGCGGCTAGCTAGCTAGATTAG 59.902 54.545 42.59 30.84 46.56 1.73
1475 1524 2.912025 ACCAGCTTGGGTTTGCCG 60.912 61.111 7.06 0.00 43.37 5.69
1750 1799 3.741344 CGTTCAAGTAAGCACTAGCAACT 59.259 43.478 0.00 0.00 45.49 3.16
1751 1800 4.143305 CGTTCAAGTAAGCACTAGCAACTC 60.143 45.833 0.00 0.00 45.49 3.01
1752 1801 4.873746 TCAAGTAAGCACTAGCAACTCT 57.126 40.909 0.00 0.00 45.49 3.24
1753 1802 5.215252 TCAAGTAAGCACTAGCAACTCTT 57.785 39.130 0.00 0.00 45.49 2.85
1754 1803 5.230942 TCAAGTAAGCACTAGCAACTCTTC 58.769 41.667 0.00 0.00 45.49 2.87
1755 1804 5.011125 TCAAGTAAGCACTAGCAACTCTTCT 59.989 40.000 0.00 0.00 45.49 2.85
1756 1805 5.476091 AGTAAGCACTAGCAACTCTTCTT 57.524 39.130 0.00 0.00 45.49 2.52
1757 1806 6.591750 AGTAAGCACTAGCAACTCTTCTTA 57.408 37.500 0.00 0.00 45.49 2.10
1798 2371 2.513753 ACCGAACATGGCTGATTTTGA 58.486 42.857 0.00 0.00 0.00 2.69
1806 2379 4.040706 ACATGGCTGATTTTGAACCAACAT 59.959 37.500 0.00 0.00 33.30 2.71
1847 2420 7.752239 CAGTTTTGCCTCATGTTGTCTATAAAG 59.248 37.037 0.00 0.00 0.00 1.85
1892 2465 7.837202 TTACACATAGTCATCCGGTAAAAAG 57.163 36.000 0.00 0.00 0.00 2.27
2035 2684 2.128771 ATGGCAACCGAGCAAGTAAT 57.871 45.000 0.00 0.00 35.83 1.89
2038 2687 2.027561 TGGCAACCGAGCAAGTAATACT 60.028 45.455 0.00 0.00 35.83 2.12
2071 2720 0.655733 AAACACCGAGCGTGAAAGTG 59.344 50.000 0.00 0.00 46.20 3.16
2134 2784 0.320508 GGACCGAAACCAGTCACCTC 60.321 60.000 0.00 0.00 34.58 3.85
2144 2796 1.260561 CCAGTCACCTCGAAAAACACG 59.739 52.381 0.00 0.00 0.00 4.49
2201 2854 0.623723 ATGGGTTAACTCGCCATGGT 59.376 50.000 14.67 0.00 0.00 3.55
2259 2913 1.745653 GCCAGAACATAGCAAGAACCC 59.254 52.381 0.00 0.00 0.00 4.11
2353 3014 4.558226 AAATATGCTATCGGCCATGAGA 57.442 40.909 2.24 0.00 40.92 3.27
2477 3138 6.057533 TCGAGATGCAACTTCCATCATTAAT 58.942 36.000 0.00 0.00 41.13 1.40
2553 3475 7.413475 AGACGAATCTATCCATGATTTTTCG 57.587 36.000 0.00 4.29 34.67 3.46
2557 3479 6.847792 CGAATCTATCCATGATTTTTCGTGTG 59.152 38.462 0.00 0.00 34.67 3.82
2681 3607 3.302365 ACATATTTTGTGCACCACAGC 57.698 42.857 15.69 0.00 45.39 4.40
2920 3847 9.669353 CATTTGATACTTCCTTTGAATAATCCG 57.331 33.333 0.00 0.00 0.00 4.18
2921 3848 9.627123 ATTTGATACTTCCTTTGAATAATCCGA 57.373 29.630 0.00 0.00 0.00 4.55
2939 3871 7.704789 AATCCGACAATATAAGTTTCGTACC 57.295 36.000 0.00 0.00 0.00 3.34
2993 3925 9.927668 ATTTTCTTAAAATATGTGTGGACCTTG 57.072 29.630 0.00 0.00 39.21 3.61
2994 3926 8.472007 TTTCTTAAAATATGTGTGGACCTTGT 57.528 30.769 0.00 0.00 0.00 3.16
2995 3927 9.575868 TTTCTTAAAATATGTGTGGACCTTGTA 57.424 29.630 0.00 0.00 0.00 2.41
2996 3928 9.575868 TTCTTAAAATATGTGTGGACCTTGTAA 57.424 29.630 0.00 0.00 0.00 2.41
2997 3929 9.575868 TCTTAAAATATGTGTGGACCTTGTAAA 57.424 29.630 0.00 0.00 0.00 2.01
2998 3930 9.620660 CTTAAAATATGTGTGGACCTTGTAAAC 57.379 33.333 0.00 0.00 0.00 2.01
2999 3931 6.584185 AAATATGTGTGGACCTTGTAAACC 57.416 37.500 0.00 0.00 0.00 3.27
3000 3932 3.876309 ATGTGTGGACCTTGTAAACCT 57.124 42.857 0.00 0.00 0.00 3.50
3001 3933 2.925724 TGTGTGGACCTTGTAAACCTG 58.074 47.619 0.00 0.00 0.00 4.00
3002 3934 2.506231 TGTGTGGACCTTGTAAACCTGA 59.494 45.455 0.00 0.00 0.00 3.86
3003 3935 3.054287 TGTGTGGACCTTGTAAACCTGAA 60.054 43.478 0.00 0.00 0.00 3.02
3004 3936 3.949113 GTGTGGACCTTGTAAACCTGAAA 59.051 43.478 0.00 0.00 0.00 2.69
3005 3937 4.036380 GTGTGGACCTTGTAAACCTGAAAG 59.964 45.833 0.00 0.00 0.00 2.62
3107 4039 9.816787 AGGATAATAAACAAAAGTTTACTCCCA 57.183 29.630 15.36 0.00 31.98 4.37
3114 4046 7.949690 AACAAAAGTTTACTCCCAAACTAGT 57.050 32.000 1.96 0.00 45.68 2.57
3115 4047 7.949690 ACAAAAGTTTACTCCCAAACTAGTT 57.050 32.000 1.12 1.12 45.68 2.24
3116 4048 8.357290 ACAAAAGTTTACTCCCAAACTAGTTT 57.643 30.769 15.22 15.22 45.68 2.66
3117 4049 9.465199 ACAAAAGTTTACTCCCAAACTAGTTTA 57.535 29.630 20.15 4.91 45.68 2.01
3118 4050 9.946165 CAAAAGTTTACTCCCAAACTAGTTTAG 57.054 33.333 20.15 16.07 45.68 1.85
3119 4051 7.741027 AAGTTTACTCCCAAACTAGTTTAGC 57.259 36.000 20.15 5.76 45.68 3.09
3120 4052 7.075851 AGTTTACTCCCAAACTAGTTTAGCT 57.924 36.000 20.15 7.88 44.83 3.32
3121 4053 8.198807 AGTTTACTCCCAAACTAGTTTAGCTA 57.801 34.615 20.15 6.19 44.83 3.32
3122 4054 8.654094 AGTTTACTCCCAAACTAGTTTAGCTAA 58.346 33.333 20.15 0.86 44.83 3.09
3123 4055 9.276590 GTTTACTCCCAAACTAGTTTAGCTAAA 57.723 33.333 20.15 14.96 35.86 1.85
3137 4069 7.668492 AGTTTAGCTAAATTATACTCCCTCCG 58.332 38.462 21.28 0.00 0.00 4.63
3138 4070 7.289549 AGTTTAGCTAAATTATACTCCCTCCGT 59.710 37.037 21.28 0.00 0.00 4.69
3139 4071 8.579863 GTTTAGCTAAATTATACTCCCTCCGTA 58.420 37.037 21.28 0.00 0.00 4.02
3140 4072 8.710749 TTAGCTAAATTATACTCCCTCCGTAA 57.289 34.615 2.97 0.00 0.00 3.18
3141 4073 7.607615 AGCTAAATTATACTCCCTCCGTAAA 57.392 36.000 0.00 0.00 0.00 2.01
3142 4074 7.440198 AGCTAAATTATACTCCCTCCGTAAAC 58.560 38.462 0.00 0.00 0.00 2.01
3143 4075 7.289549 AGCTAAATTATACTCCCTCCGTAAACT 59.710 37.037 0.00 0.00 0.00 2.66
3144 4076 8.579863 GCTAAATTATACTCCCTCCGTAAACTA 58.420 37.037 0.00 0.00 0.00 2.24
3153 4085 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3154 4086 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3155 4087 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
3156 4088 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
3157 4089 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
3158 4090 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3185 4117 9.250624 AGATTACTACTTTGATGATCTAAACGC 57.749 33.333 0.00 0.00 0.00 4.84
3186 4118 9.250624 GATTACTACTTTGATGATCTAAACGCT 57.749 33.333 0.00 0.00 0.00 5.07
3187 4119 8.630278 TTACTACTTTGATGATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03
3188 4120 6.868622 ACTACTTTGATGATCTAAACGCTCT 58.131 36.000 0.00 0.00 0.00 4.09
3189 4121 7.324178 ACTACTTTGATGATCTAAACGCTCTT 58.676 34.615 0.00 0.00 0.00 2.85
3190 4122 8.467598 ACTACTTTGATGATCTAAACGCTCTTA 58.532 33.333 0.00 0.00 0.00 2.10
3191 4123 9.469807 CTACTTTGATGATCTAAACGCTCTTAT 57.530 33.333 0.00 0.00 0.00 1.73
3193 4125 9.988815 ACTTTGATGATCTAAACGCTCTTATAT 57.011 29.630 0.00 0.00 0.00 0.86
3207 4139 9.953697 AACGCTCTTATATTAGTTTACAGAGAG 57.046 33.333 0.00 0.00 34.15 3.20
3208 4140 9.339850 ACGCTCTTATATTAGTTTACAGAGAGA 57.660 33.333 4.35 0.00 32.80 3.10
3209 4141 9.820229 CGCTCTTATATTAGTTTACAGAGAGAG 57.180 37.037 0.00 0.00 30.76 3.20
3348 4456 9.787532 ATTGTAACAATGTATTGCAGTTATGTC 57.212 29.630 4.58 0.00 41.38 3.06
3401 4524 8.282256 GGCCCCATATTATTAAGATCATAGGTT 58.718 37.037 0.00 0.00 0.00 3.50
3509 4633 6.832520 TGTTGCACTATATCACAAATTGGT 57.167 33.333 0.00 0.00 0.00 3.67
3512 4636 7.826744 TGTTGCACTATATCACAAATTGGTAGA 59.173 33.333 0.00 0.00 0.00 2.59
3589 4714 1.228033 CGCATCATCCCTGCATCCA 60.228 57.895 0.00 0.00 39.64 3.41
3667 4792 4.321974 GGGCAAAAGACAGGAAATAACCAG 60.322 45.833 0.00 0.00 0.00 4.00
3846 4972 6.210784 ACTCAGACTTGCCTAGTTGTATTACA 59.789 38.462 0.00 0.00 37.17 2.41
3917 5060 4.566759 TGCGTCTAAAACAGCTCATCATAC 59.433 41.667 0.00 0.00 0.00 2.39
3919 5062 4.317418 CGTCTAAAACAGCTCATCATACGC 60.317 45.833 0.00 0.00 0.00 4.42
3924 5067 1.667724 ACAGCTCATCATACGCTTTGC 59.332 47.619 0.00 0.00 0.00 3.68
3925 5068 1.938577 CAGCTCATCATACGCTTTGCT 59.061 47.619 0.00 0.00 0.00 3.91
3926 5069 3.126073 CAGCTCATCATACGCTTTGCTA 58.874 45.455 0.00 0.00 0.00 3.49
3927 5070 3.744942 CAGCTCATCATACGCTTTGCTAT 59.255 43.478 0.00 0.00 0.00 2.97
3928 5071 3.744942 AGCTCATCATACGCTTTGCTATG 59.255 43.478 0.00 0.00 0.00 2.23
3929 5072 3.496130 GCTCATCATACGCTTTGCTATGT 59.504 43.478 0.00 0.00 0.00 2.29
3930 5073 4.610007 GCTCATCATACGCTTTGCTATGTG 60.610 45.833 0.00 0.00 0.00 3.21
3931 5074 3.809279 TCATCATACGCTTTGCTATGTGG 59.191 43.478 0.28 0.00 0.00 4.17
3932 5075 3.535280 TCATACGCTTTGCTATGTGGA 57.465 42.857 0.28 0.00 0.00 4.02
3933 5076 4.071961 TCATACGCTTTGCTATGTGGAT 57.928 40.909 0.28 0.00 0.00 3.41
3934 5077 3.809279 TCATACGCTTTGCTATGTGGATG 59.191 43.478 11.81 11.81 36.61 3.51
3935 5078 1.382522 ACGCTTTGCTATGTGGATGG 58.617 50.000 0.28 0.00 0.00 3.51
3936 5079 1.340017 ACGCTTTGCTATGTGGATGGT 60.340 47.619 0.28 0.00 0.00 3.55
3937 5080 1.745087 CGCTTTGCTATGTGGATGGTT 59.255 47.619 0.00 0.00 0.00 3.67
3938 5081 2.164219 CGCTTTGCTATGTGGATGGTTT 59.836 45.455 0.00 0.00 0.00 3.27
3939 5082 3.367292 CGCTTTGCTATGTGGATGGTTTT 60.367 43.478 0.00 0.00 0.00 2.43
3940 5083 3.928375 GCTTTGCTATGTGGATGGTTTTG 59.072 43.478 0.00 0.00 0.00 2.44
3949 5092 1.595093 GGATGGTTTTGAGCGGTGGG 61.595 60.000 0.00 0.00 0.00 4.61
4048 5194 9.283768 TGCCGAATCATATATTGTGATACTTTT 57.716 29.630 4.33 0.00 35.35 2.27
4098 5244 7.136289 AGCAGCCAATCAAATAAAAACAATG 57.864 32.000 0.00 0.00 0.00 2.82
4221 5367 1.691196 TGAACTGGAAGCACCCAAAG 58.309 50.000 0.00 0.00 37.60 2.77
4337 5483 1.135257 CATCTCACAGGTCACCGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
4417 5563 5.112686 GTGGATAGCAACTCTAGAAACCTG 58.887 45.833 0.00 0.00 0.00 4.00
4477 5640 5.771469 CATCTACAATCACAACCTGCAAAA 58.229 37.500 0.00 0.00 0.00 2.44
4481 5644 7.271511 TCTACAATCACAACCTGCAAAATTTT 58.728 30.769 0.00 0.00 0.00 1.82
4484 5647 6.543100 ACAATCACAACCTGCAAAATTTTCAT 59.457 30.769 0.00 0.00 0.00 2.57
4491 5654 3.062909 CCTGCAAAATTTTCATGGATGCG 59.937 43.478 0.00 0.00 35.18 4.73
4492 5655 2.415857 TGCAAAATTTTCATGGATGCGC 59.584 40.909 0.00 0.00 35.18 6.09
4599 6047 3.304592 CGAAACACTGATGGTTGCATGAA 60.305 43.478 0.00 0.00 35.22 2.57
4602 6050 4.877378 ACACTGATGGTTGCATGAATTT 57.123 36.364 0.00 0.00 0.00 1.82
4654 6102 3.712907 TAGTCCGGTGCAAGGGCC 61.713 66.667 10.12 0.00 40.13 5.80
4677 6125 1.429825 CGGAGCTACAGACGTCCAG 59.570 63.158 13.01 8.07 0.00 3.86
4700 6148 2.806244 GCGTAGAAGCAAGTGAAAAGGA 59.194 45.455 0.00 0.00 37.05 3.36
4701 6149 3.437049 GCGTAGAAGCAAGTGAAAAGGAT 59.563 43.478 0.00 0.00 37.05 3.24
4815 6265 7.568738 CCCATATATGAGTTGGATATGAGGGTA 59.431 40.741 14.54 0.00 36.18 3.69
4837 6287 2.355108 CCGGTCAGTCTGGTCATTTGAT 60.355 50.000 0.00 0.00 37.78 2.57
4840 6290 4.583871 GGTCAGTCTGGTCATTTGATTCT 58.416 43.478 0.00 0.00 0.00 2.40
4864 6317 2.037367 AGGCGCTAGTCTGGGTCA 59.963 61.111 7.64 0.00 0.00 4.02
4866 6319 0.978146 AGGCGCTAGTCTGGGTCAAT 60.978 55.000 7.64 0.00 0.00 2.57
4867 6320 0.530870 GGCGCTAGTCTGGGTCAATC 60.531 60.000 7.64 0.00 0.00 2.67
4888 6341 1.900245 TTTTTAACCGAGGCCTCCAC 58.100 50.000 27.20 3.13 0.00 4.02
4890 6343 2.175035 TTTAACCGAGGCCTCCACCG 62.175 60.000 27.20 15.81 33.69 4.94
4891 6344 3.892104 TAACCGAGGCCTCCACCGT 62.892 63.158 27.20 14.61 33.69 4.83
4938 6400 4.500545 CGCAGGACTGTAGATGCTCTAAAT 60.501 45.833 0.82 0.00 36.52 1.40
4939 6401 4.987912 GCAGGACTGTAGATGCTCTAAATC 59.012 45.833 0.82 0.00 35.78 2.17
4940 6402 5.537188 CAGGACTGTAGATGCTCTAAATCC 58.463 45.833 0.00 0.00 29.58 3.01
4941 6403 5.069648 CAGGACTGTAGATGCTCTAAATCCA 59.930 44.000 14.30 3.40 32.81 3.41
4942 6404 5.069781 AGGACTGTAGATGCTCTAAATCCAC 59.930 44.000 14.30 0.00 32.81 4.02
4943 6405 5.163405 GGACTGTAGATGCTCTAAATCCACA 60.163 44.000 10.50 0.00 31.67 4.17
4944 6406 6.299805 ACTGTAGATGCTCTAAATCCACAA 57.700 37.500 0.00 0.00 29.58 3.33
4945 6407 6.711277 ACTGTAGATGCTCTAAATCCACAAA 58.289 36.000 0.00 0.00 29.58 2.83
4964 6426 3.393426 AATCCACATTGGCAAGAGGAT 57.607 42.857 19.27 19.27 37.47 3.24
4984 6446 4.157289 GGATGAATCCTTGCATTATCGCAT 59.843 41.667 1.86 0.00 43.73 4.73
4993 6455 0.389296 CATTATCGCATCCGCCGGTA 60.389 55.000 1.63 0.00 33.11 4.02
5253 6716 0.037419 TCATGTTGCTAGCGCTGTGA 60.037 50.000 22.90 9.20 36.97 3.58
5256 6719 1.061570 GTTGCTAGCGCTGTGATGC 59.938 57.895 22.90 16.05 36.97 3.91
5257 6720 2.108514 TTGCTAGCGCTGTGATGCC 61.109 57.895 22.90 0.48 36.97 4.40
5258 6721 3.634072 GCTAGCGCTGTGATGCCG 61.634 66.667 22.90 0.00 0.00 5.69
5259 6722 3.634072 CTAGCGCTGTGATGCCGC 61.634 66.667 22.90 0.00 34.52 6.53
5260 6723 4.147449 TAGCGCTGTGATGCCGCT 62.147 61.111 22.90 11.54 42.14 5.52
5261 6724 2.683820 CTAGCGCTGTGATGCCGCTA 62.684 60.000 22.90 12.51 40.79 4.26
5262 6725 2.683820 TAGCGCTGTGATGCCGCTAG 62.684 60.000 22.90 0.00 40.79 3.42
5264 6727 1.065764 CGCTGTGATGCCGCTAGTA 59.934 57.895 0.00 0.00 0.00 1.82
5335 6799 6.589523 GCATGCGGCCATTTTATTGATTATTA 59.410 34.615 0.00 0.00 36.11 0.98
5340 6804 9.202273 GCGGCCATTTTATTGATTATTATTGAA 57.798 29.630 2.24 0.00 0.00 2.69
5410 6874 2.899900 ACATCTGCCGCTAATCCTATCA 59.100 45.455 0.00 0.00 0.00 2.15
5459 6923 3.380004 CACATACTCAGACCTCTCACCTC 59.620 52.174 0.00 0.00 0.00 3.85
5534 6998 2.086251 TAAACCGGTCCGACGCACTT 62.086 55.000 14.39 0.00 0.00 3.16
5589 7079 4.115199 GGCAGGTCCTCCGCCATT 62.115 66.667 14.14 0.00 45.58 3.16
5594 7084 2.264794 GTCCTCCGCCATTGACGT 59.735 61.111 0.00 0.00 0.00 4.34
5595 7085 1.375523 GTCCTCCGCCATTGACGTT 60.376 57.895 0.00 0.00 0.00 3.99
5667 7157 2.125147 CATGGACGCCACCACGAT 60.125 61.111 0.50 0.00 43.03 3.73
5778 7270 2.990967 CCCACAAGCGCCACCAAT 60.991 61.111 2.29 0.00 0.00 3.16
5810 7302 1.002900 CAAAGCGGCGTCTTCAAGAAA 60.003 47.619 9.37 0.00 0.00 2.52
5811 7303 1.305201 AAGCGGCGTCTTCAAGAAAA 58.695 45.000 9.37 0.00 0.00 2.29
5881 7373 1.621622 CCGAAAGACCTAGGGGAAGGA 60.622 57.143 14.81 0.00 39.15 3.36
5882 7374 2.185387 CGAAAGACCTAGGGGAAGGAA 58.815 52.381 14.81 0.00 39.15 3.36
5892 7384 5.256389 ACCTAGGGGAAGGAAAAATGAGAAT 59.744 40.000 14.81 0.00 39.15 2.40
5910 7402 4.142790 AGAATATCAGTCCATACCGACGT 58.857 43.478 0.00 0.00 37.85 4.34
5914 7406 1.065636 TCAGTCCATACCGACGTCTCT 60.066 52.381 14.70 0.24 37.85 3.10
5975 7470 2.183300 CCCGCTAGCTACGTTGCA 59.817 61.111 23.41 9.00 34.99 4.08
6043 7539 6.664428 TCATTGATACCCGATAAGTGATGA 57.336 37.500 0.00 0.00 0.00 2.92
6045 7541 6.493458 TCATTGATACCCGATAAGTGATGAGA 59.507 38.462 0.00 0.00 0.00 3.27
6143 7643 0.813210 CGAGCTTTCTCTCCCCATGC 60.813 60.000 0.00 0.00 37.19 4.06
6154 7654 0.762418 TCCCCATGCGTCGGATAAAT 59.238 50.000 0.00 0.00 0.00 1.40
6306 7814 6.654793 AGCTAGCGAACTTCTTTTTATCTG 57.345 37.500 9.55 0.00 0.00 2.90
6356 7864 0.942252 AAACCTTCGAGACGCCAAAC 59.058 50.000 0.00 0.00 0.00 2.93
6386 7894 6.644347 TGAGGATGACAGAAAAGATCTTACC 58.356 40.000 8.75 3.69 35.73 2.85
6418 7926 3.382546 GGTTTGCTGATATGCATGTTCCT 59.617 43.478 10.16 0.00 42.96 3.36
6452 7967 8.463930 TGTTTGAGGGGATATATGAATGTTTC 57.536 34.615 0.00 0.00 0.00 2.78
6500 8015 9.601217 ACCAAGTGAAGACAGATAAACATATAC 57.399 33.333 0.00 0.00 0.00 1.47
6587 8111 5.670792 AATAGTACTTGATTCCGACCACA 57.329 39.130 0.00 0.00 0.00 4.17
6588 8112 3.594603 AGTACTTGATTCCGACCACAG 57.405 47.619 0.00 0.00 0.00 3.66
6589 8113 2.897969 AGTACTTGATTCCGACCACAGT 59.102 45.455 0.00 0.00 0.00 3.55
6590 8114 2.169832 ACTTGATTCCGACCACAGTG 57.830 50.000 0.00 0.00 0.00 3.66
6591 8115 1.270839 ACTTGATTCCGACCACAGTGG 60.271 52.381 18.93 18.93 45.02 4.00
6723 8254 0.951040 GCACCTACTGCTGCGAAGTT 60.951 55.000 0.00 0.00 43.33 2.66
6828 8359 3.807538 GAGCAGCACATGGCCGTG 61.808 66.667 23.83 23.83 46.50 4.94
6849 8380 4.764771 TACTACCCGCGGTGCCCT 62.765 66.667 26.12 4.54 36.19 5.19
6850 8381 3.357444 TACTACCCGCGGTGCCCTA 62.357 63.158 26.12 3.47 36.19 3.53
6972 8503 4.778143 GCCCAGTGGATCGCCGTT 62.778 66.667 11.95 0.00 36.79 4.44
7520 9078 6.713903 TGTACTCCCTATATACTAGTGTGTGC 59.286 42.308 5.39 0.00 0.00 4.57
7573 9131 6.963049 AATTGTGATCCTACTTGTAACGAC 57.037 37.500 0.00 0.00 0.00 4.34
7574 9132 5.456548 TTGTGATCCTACTTGTAACGACA 57.543 39.130 0.00 0.00 0.00 4.35
7601 9162 2.722094 ACACCAGTGCAAGAGAAAACA 58.278 42.857 0.00 0.00 0.00 2.83
7661 9231 7.178274 TCACCAAACCAAAATGTTAGAGCATAT 59.822 33.333 0.00 0.00 0.00 1.78
7700 9323 4.413760 AGTAGGCTGTAGTGTGTTTCCTA 58.586 43.478 0.00 0.00 0.00 2.94
7721 9344 7.683578 TCCTACCATCATCAGAATCCTATTTG 58.316 38.462 0.00 0.00 0.00 2.32
7752 9375 6.697395 AGAAGGTAAGAGAAGAGAAAAGAGC 58.303 40.000 0.00 0.00 0.00 4.09
7753 9376 6.268847 AGAAGGTAAGAGAAGAGAAAAGAGCA 59.731 38.462 0.00 0.00 0.00 4.26
7762 9385 5.769162 AGAAGAGAAAAGAGCAAATGAAGCT 59.231 36.000 0.00 0.00 46.82 3.74
7763 9386 5.373981 AGAGAAAAGAGCAAATGAAGCTG 57.626 39.130 0.00 0.00 43.58 4.24
7770 9393 0.316204 GCAAATGAAGCTGGCACACT 59.684 50.000 0.00 0.00 0.00 3.55
7778 9401 2.317609 GCTGGCACACTGTGTACCG 61.318 63.158 21.86 17.52 36.57 4.02
7779 9402 1.069090 CTGGCACACTGTGTACCGT 59.931 57.895 21.86 0.00 36.57 4.83
7798 9421 3.374058 CCGTCCAGCCTAAACACATAAAG 59.626 47.826 0.00 0.00 0.00 1.85
7823 9446 1.604278 AGAAAAAGAACCTCAGTGCGC 59.396 47.619 0.00 0.00 0.00 6.09
7824 9447 0.307760 AAAAAGAACCTCAGTGCGCG 59.692 50.000 0.00 0.00 0.00 6.86
7825 9448 0.531974 AAAAGAACCTCAGTGCGCGA 60.532 50.000 12.10 0.00 0.00 5.87
7915 9538 2.160205 CTCGTGTGAAGGGTGAGAGTA 58.840 52.381 0.00 0.00 0.00 2.59
7926 9549 1.508632 GTGAGAGTAGCGTTTTGGCA 58.491 50.000 0.00 0.00 34.64 4.92
7937 9560 2.929903 TTTTGGCACATGGGAGCGC 61.930 57.895 0.00 0.00 39.30 5.92
7938 9561 4.657408 TTGGCACATGGGAGCGCA 62.657 61.111 11.47 0.00 39.30 6.09
7939 9562 3.942377 TTGGCACATGGGAGCGCAT 62.942 57.895 11.47 0.00 39.30 4.73
7953 9576 0.171007 GCGCATGCTCTTGGCTTTTA 59.829 50.000 17.13 0.00 42.39 1.52
8025 9649 4.848562 TGGCTCGTACATCTCGATATTT 57.151 40.909 0.00 0.00 36.73 1.40
8031 9655 7.201359 GGCTCGTACATCTCGATATTTTACATG 60.201 40.741 0.00 0.00 36.73 3.21
8042 9666 7.684670 TCGATATTTTACATGCTCACAAAGTC 58.315 34.615 0.00 0.00 0.00 3.01
8048 9672 2.942376 ACATGCTCACAAAGTCGTTTCA 59.058 40.909 0.00 0.00 0.00 2.69
8050 9674 3.607422 TGCTCACAAAGTCGTTTCATG 57.393 42.857 0.00 0.00 0.00 3.07
8055 9680 5.514914 GCTCACAAAGTCGTTTCATGAAAAA 59.485 36.000 22.07 10.98 31.33 1.94
8075 9700 2.456989 ACGATAACTTATGTGTCGCGG 58.543 47.619 6.13 0.00 38.11 6.46
8083 9708 1.149987 TATGTGTCGCGGGTGAAAAC 58.850 50.000 6.13 0.00 0.00 2.43
8085 9710 1.025113 TGTGTCGCGGGTGAAAACAA 61.025 50.000 6.13 0.00 0.00 2.83
8086 9711 0.590481 GTGTCGCGGGTGAAAACAAC 60.590 55.000 6.13 0.00 0.00 3.32
8160 9785 2.491693 ACAAGCCACATAAAATGTCGGG 59.508 45.455 9.19 2.77 42.70 5.14
8222 9847 5.335827 TGTATGCGCCAAATTTTTGTTTC 57.664 34.783 4.18 0.00 36.45 2.78
8287 9912 3.636231 CTCCCGGGAGCACCAACA 61.636 66.667 36.90 4.87 40.22 3.33
8296 9921 0.804989 GAGCACCAACAGATTTCCGG 59.195 55.000 0.00 0.00 0.00 5.14
8298 9923 1.202879 AGCACCAACAGATTTCCGGAA 60.203 47.619 14.35 14.35 0.00 4.30
8299 9924 1.068541 GCACCAACAGATTTCCGGAAC 60.069 52.381 18.64 6.53 0.00 3.62
8300 9925 2.226330 CACCAACAGATTTCCGGAACA 58.774 47.619 18.64 8.98 0.00 3.18
8302 9927 2.158667 ACCAACAGATTTCCGGAACAGT 60.159 45.455 18.64 10.19 0.00 3.55
8303 9928 3.071892 ACCAACAGATTTCCGGAACAGTA 59.928 43.478 18.64 1.73 0.00 2.74
8304 9929 3.684788 CCAACAGATTTCCGGAACAGTAG 59.315 47.826 18.64 8.77 0.00 2.57
8311 10137 2.806608 TCCGGAACAGTAGTCACAAC 57.193 50.000 0.00 0.00 0.00 3.32
8312 10138 1.342174 TCCGGAACAGTAGTCACAACC 59.658 52.381 0.00 0.00 0.00 3.77
8316 10142 3.751518 GGAACAGTAGTCACAACCCATT 58.248 45.455 0.00 0.00 0.00 3.16
8317 10143 4.142038 GGAACAGTAGTCACAACCCATTT 58.858 43.478 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 4.022416 GTCAGATCTAGAGTTCGATGGCAT 60.022 45.833 0.00 0.00 0.00 4.40
120 121 3.316588 GTCAGATCTAGAGTTCGATGGCA 59.683 47.826 0.00 0.00 0.00 4.92
289 291 0.732880 GTCTCCGACGTCATGGTGTG 60.733 60.000 17.16 5.24 0.00 3.82
290 292 1.176619 TGTCTCCGACGTCATGGTGT 61.177 55.000 17.16 0.00 34.95 4.16
443 445 1.226859 CTTTATGGCGGCGTCTCGA 60.227 57.895 14.51 0.00 0.00 4.04
541 543 8.000127 TGTAGTTAGGTTTTGGATTTGTAGGTT 59.000 33.333 0.00 0.00 0.00 3.50
568 570 2.680370 GGACCCCATTCCTCCGCTT 61.680 63.158 0.00 0.00 32.24 4.68
665 668 2.279073 CCTGGCGACTAGGGAGGA 59.721 66.667 0.00 0.00 0.00 3.71
688 691 3.320411 TTCCCTACCCTAGCCGCCA 62.320 63.158 0.00 0.00 0.00 5.69
716 719 9.438228 TTTATTTGTCGTCATAAACCACTATGA 57.562 29.630 0.00 0.00 36.22 2.15
720 723 9.010029 AGATTTTATTTGTCGTCATAAACCACT 57.990 29.630 0.00 0.00 0.00 4.00
721 724 9.274065 GAGATTTTATTTGTCGTCATAAACCAC 57.726 33.333 0.00 0.00 0.00 4.16
722 725 9.226606 AGAGATTTTATTTGTCGTCATAAACCA 57.773 29.630 0.00 0.00 0.00 3.67
726 729 9.542462 CCCTAGAGATTTTATTTGTCGTCATAA 57.458 33.333 0.00 0.00 0.00 1.90
727 730 8.920174 TCCCTAGAGATTTTATTTGTCGTCATA 58.080 33.333 0.00 0.00 0.00 2.15
728 731 7.792032 TCCCTAGAGATTTTATTTGTCGTCAT 58.208 34.615 0.00 0.00 0.00 3.06
729 732 7.177832 TCCCTAGAGATTTTATTTGTCGTCA 57.822 36.000 0.00 0.00 0.00 4.35
730 733 6.702282 CCTCCCTAGAGATTTTATTTGTCGTC 59.298 42.308 0.00 0.00 43.39 4.20
731 734 6.156429 ACCTCCCTAGAGATTTTATTTGTCGT 59.844 38.462 0.00 0.00 43.39 4.34
732 735 6.583562 ACCTCCCTAGAGATTTTATTTGTCG 58.416 40.000 0.00 0.00 43.39 4.35
826 829 4.785453 CCGGAGCTCCACCAAGCC 62.785 72.222 31.67 3.46 43.56 4.35
848 855 0.564171 AGTGGACCGGGATGGGTATA 59.436 55.000 6.32 0.00 44.64 1.47
849 856 1.054406 CAGTGGACCGGGATGGGTAT 61.054 60.000 6.32 0.00 44.64 2.73
850 857 1.687840 CAGTGGACCGGGATGGGTA 60.688 63.158 6.32 0.00 44.64 3.69
851 858 3.009115 CAGTGGACCGGGATGGGT 61.009 66.667 6.32 0.00 44.64 4.51
852 859 4.489771 GCAGTGGACCGGGATGGG 62.490 72.222 6.32 0.00 44.64 4.00
918 925 3.303857 GGATCGCCATATATCGAGTACCG 60.304 52.174 3.33 0.00 38.17 4.02
998 1012 1.078143 AGAAGCTGGGTCGCCATTC 60.078 57.895 0.00 0.00 0.00 2.67
1007 1021 2.046892 CGGTGGACAGAAGCTGGG 60.047 66.667 0.00 0.00 35.51 4.45
1053 1067 4.124351 TTCTCGGGCCGCGTGTAG 62.124 66.667 23.83 13.58 0.00 2.74
1303 1352 0.318699 GCCGTGAAGCCTTGGAAAAC 60.319 55.000 0.00 0.00 0.00 2.43
1396 1445 1.706995 ATCAGAGAGGGCATGGCAGG 61.707 60.000 22.06 0.00 0.00 4.85
1475 1524 9.971922 CCCATGGTTTATGATCTAAAAGAAATC 57.028 33.333 11.73 0.00 39.21 2.17
1750 1799 9.830186 AGGCCAATATAGACTAAGATAAGAAGA 57.170 33.333 5.01 0.00 0.00 2.87
1755 1804 8.746530 CGGTTAGGCCAATATAGACTAAGATAA 58.253 37.037 5.01 0.00 36.97 1.75
1756 1805 8.111545 TCGGTTAGGCCAATATAGACTAAGATA 58.888 37.037 5.01 0.00 36.97 1.98
1757 1806 6.952358 TCGGTTAGGCCAATATAGACTAAGAT 59.048 38.462 5.01 0.00 36.97 2.40
1870 2443 4.634443 GCTTTTTACCGGATGACTATGTGT 59.366 41.667 9.46 0.00 0.00 3.72
1892 2465 5.819379 TGAGAAATACAAGAGGATGATGTGC 59.181 40.000 0.00 0.00 0.00 4.57
2035 2684 6.714810 TCGGTGTTTAGTTGGTAGAACTAGTA 59.285 38.462 0.00 0.00 34.58 1.82
2038 2687 5.565439 GCTCGGTGTTTAGTTGGTAGAACTA 60.565 44.000 0.00 0.00 0.00 2.24
2071 2720 5.185249 TCTCTTGTTATGTGTAGTGTCTCCC 59.815 44.000 0.00 0.00 0.00 4.30
2085 2734 7.907389 TGATAGTCTTGGTTGTCTCTTGTTAT 58.093 34.615 0.00 0.00 0.00 1.89
2144 2796 1.344114 TGTTTGGTACTACGGTGTCCC 59.656 52.381 0.00 0.00 0.00 4.46
2259 2913 0.314302 ACCTCGTGGTCTTCGTTCTG 59.686 55.000 2.61 0.00 44.78 3.02
2379 3040 3.254166 GGTTGGCAATCTCGAATATGCAT 59.746 43.478 1.92 3.79 40.51 3.96
2553 3475 5.979517 GCTTTAGATATTGGATTTGGCACAC 59.020 40.000 0.00 0.00 39.29 3.82
2557 3479 9.933723 AATATTGCTTTAGATATTGGATTTGGC 57.066 29.630 0.00 0.00 29.68 4.52
2681 3607 6.898041 TCACATGTTCAGAAAAAGGTATTCG 58.102 36.000 0.00 0.00 32.04 3.34
2918 3845 8.578308 TTATGGTACGAAACTTATATTGTCGG 57.422 34.615 0.00 0.00 36.06 4.79
2975 3907 6.780522 AGGTTTACAAGGTCCACACATATTTT 59.219 34.615 0.00 0.00 0.00 1.82
2977 3909 5.710099 CAGGTTTACAAGGTCCACACATATT 59.290 40.000 0.00 0.00 0.00 1.28
2978 3910 5.013704 TCAGGTTTACAAGGTCCACACATAT 59.986 40.000 0.00 0.00 0.00 1.78
2979 3911 4.348461 TCAGGTTTACAAGGTCCACACATA 59.652 41.667 0.00 0.00 0.00 2.29
2980 3912 3.137544 TCAGGTTTACAAGGTCCACACAT 59.862 43.478 0.00 0.00 0.00 3.21
2981 3913 2.506231 TCAGGTTTACAAGGTCCACACA 59.494 45.455 0.00 0.00 0.00 3.72
2982 3914 3.202829 TCAGGTTTACAAGGTCCACAC 57.797 47.619 0.00 0.00 0.00 3.82
2983 3915 3.935818 TTCAGGTTTACAAGGTCCACA 57.064 42.857 0.00 0.00 0.00 4.17
2984 3916 3.568430 CCTTTCAGGTTTACAAGGTCCAC 59.432 47.826 0.00 0.00 32.49 4.02
2985 3917 3.460340 TCCTTTCAGGTTTACAAGGTCCA 59.540 43.478 0.00 0.00 37.62 4.02
2986 3918 4.072839 CTCCTTTCAGGTTTACAAGGTCC 58.927 47.826 0.00 0.00 37.62 4.46
2987 3919 4.969484 TCTCCTTTCAGGTTTACAAGGTC 58.031 43.478 0.00 0.00 37.62 3.85
2988 3920 4.658901 TCTCTCCTTTCAGGTTTACAAGGT 59.341 41.667 0.00 0.00 37.62 3.50
2989 3921 5.228945 TCTCTCCTTTCAGGTTTACAAGG 57.771 43.478 0.00 0.00 36.53 3.61
2990 3922 7.334671 GGTATTCTCTCCTTTCAGGTTTACAAG 59.665 40.741 0.00 0.00 36.53 3.16
2991 3923 7.166167 GGTATTCTCTCCTTTCAGGTTTACAA 58.834 38.462 0.00 0.00 36.53 2.41
2992 3924 6.271391 TGGTATTCTCTCCTTTCAGGTTTACA 59.729 38.462 0.00 0.00 36.53 2.41
2993 3925 6.708285 TGGTATTCTCTCCTTTCAGGTTTAC 58.292 40.000 0.00 0.00 36.53 2.01
2994 3926 6.945636 TGGTATTCTCTCCTTTCAGGTTTA 57.054 37.500 0.00 0.00 36.53 2.01
2995 3927 5.843019 TGGTATTCTCTCCTTTCAGGTTT 57.157 39.130 0.00 0.00 36.53 3.27
2996 3928 7.698163 ATATGGTATTCTCTCCTTTCAGGTT 57.302 36.000 0.00 0.00 36.53 3.50
2997 3929 8.652290 GTTATATGGTATTCTCTCCTTTCAGGT 58.348 37.037 0.00 0.00 36.53 4.00
2998 3930 8.651389 TGTTATATGGTATTCTCTCCTTTCAGG 58.349 37.037 0.00 0.00 36.46 3.86
3090 4022 7.949690 ACTAGTTTGGGAGTAAACTTTTGTT 57.050 32.000 8.91 0.00 45.85 2.83
3091 4023 7.949690 AACTAGTTTGGGAGTAAACTTTTGT 57.050 32.000 1.12 4.59 45.85 2.83
3092 4024 9.946165 CTAAACTAGTTTGGGAGTAAACTTTTG 57.054 33.333 27.40 0.00 45.85 2.44
3093 4025 8.627403 GCTAAACTAGTTTGGGAGTAAACTTTT 58.373 33.333 27.40 7.45 45.85 2.27
3094 4026 7.997223 AGCTAAACTAGTTTGGGAGTAAACTTT 59.003 33.333 27.40 1.86 45.85 2.66
3095 4027 7.515586 AGCTAAACTAGTTTGGGAGTAAACTT 58.484 34.615 27.40 2.29 45.85 2.66
3097 4029 8.837788 TTAGCTAAACTAGTTTGGGAGTAAAC 57.162 34.615 27.40 11.83 40.08 2.01
3111 4043 8.800332 CGGAGGGAGTATAATTTAGCTAAACTA 58.200 37.037 20.85 15.07 0.00 2.24
3112 4044 7.289549 ACGGAGGGAGTATAATTTAGCTAAACT 59.710 37.037 20.85 13.20 0.00 2.66
3113 4045 7.440198 ACGGAGGGAGTATAATTTAGCTAAAC 58.560 38.462 20.85 8.96 0.00 2.01
3114 4046 7.607615 ACGGAGGGAGTATAATTTAGCTAAA 57.392 36.000 20.71 20.71 0.00 1.85
3115 4047 8.710749 TTACGGAGGGAGTATAATTTAGCTAA 57.289 34.615 0.86 0.86 0.00 3.09
3116 4048 8.579863 GTTTACGGAGGGAGTATAATTTAGCTA 58.420 37.037 0.00 0.00 0.00 3.32
3117 4049 7.289549 AGTTTACGGAGGGAGTATAATTTAGCT 59.710 37.037 0.00 0.00 0.00 3.32
3118 4050 7.440198 AGTTTACGGAGGGAGTATAATTTAGC 58.560 38.462 0.00 0.00 0.00 3.09
3127 4059 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3128 4060 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3129 4061 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3130 4062 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3131 4063 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3132 4064 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3159 4091 9.250624 GCGTTTAGATCATCAAAGTAGTAATCT 57.749 33.333 0.00 0.00 0.00 2.40
3160 4092 9.250624 AGCGTTTAGATCATCAAAGTAGTAATC 57.749 33.333 0.00 0.00 0.00 1.75
3161 4093 9.250624 GAGCGTTTAGATCATCAAAGTAGTAAT 57.749 33.333 0.00 0.00 34.89 1.89
3162 4094 8.467598 AGAGCGTTTAGATCATCAAAGTAGTAA 58.532 33.333 0.00 0.00 37.82 2.24
3163 4095 7.997482 AGAGCGTTTAGATCATCAAAGTAGTA 58.003 34.615 0.00 0.00 37.82 1.82
3164 4096 6.868622 AGAGCGTTTAGATCATCAAAGTAGT 58.131 36.000 0.00 0.00 37.82 2.73
3165 4097 7.763172 AAGAGCGTTTAGATCATCAAAGTAG 57.237 36.000 0.00 0.00 37.82 2.57
3167 4099 9.988815 ATATAAGAGCGTTTAGATCATCAAAGT 57.011 29.630 0.00 0.00 37.82 2.66
3181 4113 9.953697 CTCTCTGTAAACTAATATAAGAGCGTT 57.046 33.333 0.00 0.00 0.00 4.84
3182 4114 9.339850 TCTCTCTGTAAACTAATATAAGAGCGT 57.660 33.333 0.00 0.00 0.00 5.07
3183 4115 9.820229 CTCTCTCTGTAAACTAATATAAGAGCG 57.180 37.037 0.00 0.00 0.00 5.03
3255 4363 8.108378 TCATAAATCAAACTAATAGTCCCCCA 57.892 34.615 0.00 0.00 0.00 4.96
3401 4524 7.279750 TGTTACGCTATATAATCAGTGGTGA 57.720 36.000 0.00 0.00 37.02 4.02
3525 4649 5.773239 TGATTTTCGTACAAAGGATCGAC 57.227 39.130 0.00 0.00 32.14 4.20
3643 4768 3.832490 GGTTATTTCCTGTCTTTTGCCCT 59.168 43.478 0.00 0.00 0.00 5.19
3737 4863 2.016318 TGGTTGCAATATTCTCTGCGG 58.984 47.619 0.59 0.00 41.63 5.69
3917 5060 1.382522 ACCATCCACATAGCAAAGCG 58.617 50.000 0.00 0.00 0.00 4.68
3919 5062 5.389859 TCAAAACCATCCACATAGCAAAG 57.610 39.130 0.00 0.00 0.00 2.77
3924 5067 2.355756 CCGCTCAAAACCATCCACATAG 59.644 50.000 0.00 0.00 0.00 2.23
3925 5068 2.290641 ACCGCTCAAAACCATCCACATA 60.291 45.455 0.00 0.00 0.00 2.29
3926 5069 1.176527 CCGCTCAAAACCATCCACAT 58.823 50.000 0.00 0.00 0.00 3.21
3927 5070 0.179004 ACCGCTCAAAACCATCCACA 60.179 50.000 0.00 0.00 0.00 4.17
3928 5071 0.240945 CACCGCTCAAAACCATCCAC 59.759 55.000 0.00 0.00 0.00 4.02
3929 5072 0.893270 CCACCGCTCAAAACCATCCA 60.893 55.000 0.00 0.00 0.00 3.41
3930 5073 1.595093 CCCACCGCTCAAAACCATCC 61.595 60.000 0.00 0.00 0.00 3.51
3931 5074 0.608035 TCCCACCGCTCAAAACCATC 60.608 55.000 0.00 0.00 0.00 3.51
3932 5075 0.178975 TTCCCACCGCTCAAAACCAT 60.179 50.000 0.00 0.00 0.00 3.55
3933 5076 1.104577 GTTCCCACCGCTCAAAACCA 61.105 55.000 0.00 0.00 0.00 3.67
3934 5077 1.658114 GTTCCCACCGCTCAAAACC 59.342 57.895 0.00 0.00 0.00 3.27
3935 5078 1.658114 GGTTCCCACCGCTCAAAAC 59.342 57.895 0.00 0.00 31.60 2.43
3936 5079 4.167597 GGTTCCCACCGCTCAAAA 57.832 55.556 0.00 0.00 31.60 2.44
3967 5110 4.963628 AGAGTGTCCCCCTCTCTATAAAAC 59.036 45.833 0.00 0.00 41.16 2.43
4000 5143 3.290710 AGTGCTCAGTGTTTTGTTCCAT 58.709 40.909 0.00 0.00 0.00 3.41
4004 5147 2.417243 GGCAAGTGCTCAGTGTTTTGTT 60.417 45.455 2.85 0.00 41.70 2.83
4048 5194 4.243793 TGGGAGTTTGTCTTCAGGAAAA 57.756 40.909 0.00 0.00 0.00 2.29
4098 5244 6.017357 ACGTTGTTTTTCTCTCCAAGGATAAC 60.017 38.462 0.00 0.00 0.00 1.89
4221 5367 9.937175 AGTTAGATCGCTAATTTCTAAAATTGC 57.063 29.630 7.69 8.06 38.74 3.56
4337 5483 1.144057 GCAGGAGGACATGGTACCG 59.856 63.158 7.57 0.00 0.00 4.02
4417 5563 3.697045 TCTGGAAGTTGCTAGCTCTAGAC 59.303 47.826 17.23 6.93 32.98 2.59
4462 5625 5.470777 CCATGAAAATTTTGCAGGTTGTGAT 59.529 36.000 8.47 0.00 0.00 3.06
4463 5626 4.815308 CCATGAAAATTTTGCAGGTTGTGA 59.185 37.500 8.47 0.00 0.00 3.58
4477 5640 1.735360 CGGGCGCATCCATGAAAAT 59.265 52.632 10.83 0.00 36.21 1.82
4481 5644 4.545706 GTCCGGGCGCATCCATGA 62.546 66.667 10.83 0.00 36.21 3.07
4612 6060 1.225376 TGCCCGTTCGACACATTGTC 61.225 55.000 0.00 0.00 43.65 3.18
4677 6125 0.511221 TTTCACTTGCTTCTACGCGC 59.489 50.000 5.73 0.00 0.00 6.86
4700 6148 0.924226 AAATCCCCCTCCGACCCAAT 60.924 55.000 0.00 0.00 0.00 3.16
4701 6149 1.542881 AAATCCCCCTCCGACCCAA 60.543 57.895 0.00 0.00 0.00 4.12
4771 6220 1.512735 GGATAGATATGGGGAGGCCC 58.487 60.000 0.00 0.00 44.51 5.80
4815 6265 1.056660 AAATGACCAGACTGACCGGT 58.943 50.000 6.92 6.92 35.12 5.28
4819 6269 5.240891 TGAGAATCAAATGACCAGACTGAC 58.759 41.667 3.32 0.00 45.97 3.51
4837 6287 2.497675 AGACTAGCGCCTCAAATGAGAA 59.502 45.455 11.94 0.00 44.74 2.87
4840 6290 1.134699 CCAGACTAGCGCCTCAAATGA 60.135 52.381 2.29 0.00 0.00 2.57
4884 6337 2.409055 CGTACATCCCGACGGTGGA 61.409 63.158 13.94 4.03 35.43 4.02
4885 6338 2.103538 CGTACATCCCGACGGTGG 59.896 66.667 13.94 4.11 35.43 4.61
4890 6343 1.891722 AACCCACCGTACATCCCGAC 61.892 60.000 0.00 0.00 0.00 4.79
4891 6344 1.193462 AAACCCACCGTACATCCCGA 61.193 55.000 0.00 0.00 0.00 5.14
4892 6345 1.022451 CAAACCCACCGTACATCCCG 61.022 60.000 0.00 0.00 0.00 5.14
4895 6348 1.734163 CCTCAAACCCACCGTACATC 58.266 55.000 0.00 0.00 0.00 3.06
4896 6349 0.322187 GCCTCAAACCCACCGTACAT 60.322 55.000 0.00 0.00 0.00 2.29
4897 6350 1.071814 GCCTCAAACCCACCGTACA 59.928 57.895 0.00 0.00 0.00 2.90
4938 6400 2.006805 TGCCAATGTGGATTTGTGGA 57.993 45.000 0.00 0.00 40.96 4.02
4939 6401 2.299582 TCTTGCCAATGTGGATTTGTGG 59.700 45.455 0.00 0.00 40.96 4.17
4940 6402 3.581755 CTCTTGCCAATGTGGATTTGTG 58.418 45.455 0.00 0.00 40.96 3.33
4941 6403 2.564062 CCTCTTGCCAATGTGGATTTGT 59.436 45.455 0.00 0.00 40.96 2.83
4942 6404 2.827322 TCCTCTTGCCAATGTGGATTTG 59.173 45.455 0.00 0.00 40.96 2.32
4943 6405 3.173953 TCCTCTTGCCAATGTGGATTT 57.826 42.857 0.00 0.00 40.96 2.17
4944 6406 2.905415 TCCTCTTGCCAATGTGGATT 57.095 45.000 0.00 0.00 40.96 3.01
4945 6407 2.242965 TCATCCTCTTGCCAATGTGGAT 59.757 45.455 0.00 5.30 40.96 3.41
4993 6455 3.192844 CAGAAAAAGACTGATGCTGGCAT 59.807 43.478 7.86 7.86 39.69 4.40
5116 6579 1.790123 CGCACATACACCACGCATTTC 60.790 52.381 0.00 0.00 0.00 2.17
5123 6586 0.515564 GGTCAACGCACATACACCAC 59.484 55.000 0.00 0.00 0.00 4.16
5179 6642 4.219507 CCACACTGCCTATCATCTACCTAG 59.780 50.000 0.00 0.00 0.00 3.02
5271 6734 2.443255 GCCAGGGATCATCCTCCTTTAA 59.557 50.000 2.93 0.00 36.57 1.52
5272 6735 2.057922 GCCAGGGATCATCCTCCTTTA 58.942 52.381 2.93 0.00 36.57 1.85
5285 6749 1.000521 CAAATGCAGAGGCCAGGGA 60.001 57.895 5.01 0.00 40.13 4.20
5358 6822 3.146066 GGCGGATTCAGGCATATTGTTA 58.854 45.455 5.51 0.00 0.00 2.41
5402 6866 6.579849 GCACCCCTTCATCATATTGATAGGAT 60.580 42.308 7.57 0.00 34.28 3.24
5410 6874 2.961062 GCTTGCACCCCTTCATCATATT 59.039 45.455 0.00 0.00 0.00 1.28
5459 6923 2.158957 TCCGGCTTTAGATGTTAGGCTG 60.159 50.000 0.00 0.00 32.77 4.85
5594 7084 3.347405 CGTTTGGCGCCGTGGTAA 61.347 61.111 23.90 7.06 0.00 2.85
5595 7085 4.296593 TCGTTTGGCGCCGTGGTA 62.297 61.111 23.90 3.93 41.07 3.25
5602 7092 3.774702 GAGGTCGTCGTTTGGCGC 61.775 66.667 0.00 0.00 41.07 6.53
5667 7157 2.029964 GGAGGTCGTCGTTTGGCA 59.970 61.111 0.00 0.00 0.00 4.92
5778 7270 0.825840 CCGCTTTGGAAACCTTGGGA 60.826 55.000 0.00 0.00 42.00 4.37
5881 7373 8.210946 TCGGTATGGACTGATATTCTCATTTTT 58.789 33.333 0.00 0.00 35.96 1.94
5882 7374 7.657761 GTCGGTATGGACTGATATTCTCATTTT 59.342 37.037 0.00 0.00 42.97 1.82
5892 7384 3.136763 GAGACGTCGGTATGGACTGATA 58.863 50.000 10.46 0.00 42.97 2.15
5910 7402 1.035932 CGCCGTTCCCTCCTTAGAGA 61.036 60.000 0.00 0.00 43.39 3.10
5914 7406 3.777910 GGCGCCGTTCCCTCCTTA 61.778 66.667 12.58 0.00 0.00 2.69
5957 7452 2.279502 CTGCAACGTAGCTAGCGGGA 62.280 60.000 9.55 0.00 34.99 5.14
5975 7470 1.664965 GACGCAGAAAGCACCGTCT 60.665 57.895 4.95 0.00 44.64 4.18
6043 7539 0.039617 GCTCGATCGCATAGTGCTCT 60.040 55.000 11.09 0.00 42.25 4.09
6045 7541 1.371022 CGCTCGATCGCATAGTGCT 60.371 57.895 11.09 0.00 42.25 4.40
6083 7579 2.422597 CAAAACGACAGTGCCTATGGA 58.577 47.619 0.00 0.00 0.00 3.41
6084 7580 1.135689 GCAAAACGACAGTGCCTATGG 60.136 52.381 0.00 0.00 31.94 2.74
6085 7581 1.535028 TGCAAAACGACAGTGCCTATG 59.465 47.619 0.00 0.00 37.48 2.23
6086 7582 1.806542 CTGCAAAACGACAGTGCCTAT 59.193 47.619 0.00 0.00 37.48 2.57
6181 7684 9.965824 ACAAAACAGTGAAATGATAAAAGGTAG 57.034 29.630 0.00 0.00 0.00 3.18
6190 7694 4.320494 GCGAGGACAAAACAGTGAAATGAT 60.320 41.667 0.00 0.00 0.00 2.45
6200 7704 0.950836 CATGGTGCGAGGACAAAACA 59.049 50.000 0.00 0.00 0.00 2.83
6334 7842 1.250328 TGGCGTCTCGAAGGTTTCTA 58.750 50.000 0.00 0.00 0.00 2.10
6336 7844 1.070108 GTTTGGCGTCTCGAAGGTTTC 60.070 52.381 0.00 0.00 0.00 2.78
6356 7864 3.808466 TTTCTGTCATCCTCATCCGAG 57.192 47.619 0.00 0.00 39.16 4.63
6386 7894 0.037326 TCAGCAAACCTACGCTCTGG 60.037 55.000 0.00 0.00 35.96 3.86
6426 7934 8.469309 AAACATTCATATATCCCCTCAAACAG 57.531 34.615 0.00 0.00 0.00 3.16
6428 7936 7.228706 ACGAAACATTCATATATCCCCTCAAAC 59.771 37.037 0.00 0.00 0.00 2.93
6432 7940 7.745620 AAACGAAACATTCATATATCCCCTC 57.254 36.000 0.00 0.00 0.00 4.30
6433 7941 7.230712 GGAAAACGAAACATTCATATATCCCCT 59.769 37.037 0.00 0.00 0.00 4.79
6452 7967 5.276270 GTCAATGATGATGATGGGAAAACG 58.724 41.667 0.00 0.00 38.01 3.60
6500 8015 6.282167 AGAAGTCTATTGAGATCAGCATGTG 58.718 40.000 0.00 0.00 37.40 3.21
6587 8111 1.002868 GCATGCACTCCACTCCACT 60.003 57.895 14.21 0.00 0.00 4.00
6588 8112 2.042831 GGCATGCACTCCACTCCAC 61.043 63.158 21.36 0.00 0.00 4.02
6589 8113 2.352422 GGCATGCACTCCACTCCA 59.648 61.111 21.36 0.00 0.00 3.86
6590 8114 2.439156 GGGCATGCACTCCACTCC 60.439 66.667 21.36 4.69 0.00 3.85
6591 8115 2.042831 GTGGGCATGCACTCCACTC 61.043 63.158 27.64 10.59 45.36 3.51
6609 8133 2.415090 CCAGATTTGAAGCAAGCGAAGG 60.415 50.000 0.00 0.00 0.00 3.46
6715 8246 2.738521 GAGCAGCCGAACTTCGCA 60.739 61.111 5.61 0.00 38.82 5.10
6828 8359 1.517913 GCACCGCGGGTAGTAGTTC 60.518 63.158 31.76 0.00 32.11 3.01
6849 8380 1.033746 CGTAGGTGAGGTCCGGCTTA 61.034 60.000 0.00 0.00 0.00 3.09
6850 8381 2.348888 CGTAGGTGAGGTCCGGCTT 61.349 63.158 0.00 0.00 0.00 4.35
7094 8629 1.332997 AGCGCCTGTACGTACATAGTC 59.667 52.381 27.50 16.79 35.36 2.59
7499 9057 4.379603 GCGCACACACTAGTATATAGGGAG 60.380 50.000 0.30 0.00 0.00 4.30
7534 9092 4.848841 TCACAATTAATAAACAAGCGCGTG 59.151 37.500 21.97 21.97 0.00 5.34
7535 9093 5.037015 TCACAATTAATAAACAAGCGCGT 57.963 34.783 8.43 0.00 0.00 6.01
7536 9094 5.171337 GGATCACAATTAATAAACAAGCGCG 59.829 40.000 0.00 0.00 0.00 6.86
7537 9095 6.265577 AGGATCACAATTAATAAACAAGCGC 58.734 36.000 0.00 0.00 0.00 5.92
7538 9096 8.612619 AGTAGGATCACAATTAATAAACAAGCG 58.387 33.333 0.00 0.00 0.00 4.68
7570 9128 2.201732 GCACTGGTGTACCATATGTCG 58.798 52.381 3.88 0.00 46.46 4.35
7573 9131 3.872696 TCTTGCACTGGTGTACCATATG 58.127 45.455 3.88 7.52 46.46 1.78
7574 9132 3.774766 TCTCTTGCACTGGTGTACCATAT 59.225 43.478 3.88 0.00 46.46 1.78
7601 9162 8.052748 TCCTGGACAGCAAATTTATTACATAGT 58.947 33.333 0.00 0.00 0.00 2.12
7686 9309 5.730550 TGATGATGGTAGGAAACACACTAC 58.269 41.667 0.00 0.00 39.01 2.73
7689 9312 4.832248 TCTGATGATGGTAGGAAACACAC 58.168 43.478 0.00 0.00 0.00 3.82
7700 9323 6.520021 TCCAAATAGGATTCTGATGATGGT 57.480 37.500 0.00 0.00 43.07 3.55
7721 9344 5.712917 TCTCTTCTCTTACCTTCTCACTTCC 59.287 44.000 0.00 0.00 0.00 3.46
7724 9347 7.507616 TCTTTTCTCTTCTCTTACCTTCTCACT 59.492 37.037 0.00 0.00 0.00 3.41
7752 9375 1.338973 ACAGTGTGCCAGCTTCATTTG 59.661 47.619 0.00 0.00 0.00 2.32
7753 9376 1.338973 CACAGTGTGCCAGCTTCATTT 59.661 47.619 10.97 0.00 0.00 2.32
7770 9393 1.001181 GTTTAGGCTGGACGGTACACA 59.999 52.381 0.00 0.00 0.00 3.72
7778 9401 4.010349 AGCTTTATGTGTTTAGGCTGGAC 58.990 43.478 0.00 0.00 0.00 4.02
7779 9402 4.301072 AGCTTTATGTGTTTAGGCTGGA 57.699 40.909 0.00 0.00 0.00 3.86
7798 9421 4.153296 GCACTGAGGTTCTTTTTCTCTAGC 59.847 45.833 0.00 0.00 0.00 3.42
7810 9433 3.482783 GCTCGCGCACTGAGGTTC 61.483 66.667 8.75 0.00 33.99 3.62
7823 9446 1.350193 ACACATGCTTCTAACGCTCG 58.650 50.000 0.00 0.00 0.00 5.03
7824 9447 3.186409 TGAAACACATGCTTCTAACGCTC 59.814 43.478 0.00 0.00 0.00 5.03
7825 9448 3.058914 GTGAAACACATGCTTCTAACGCT 60.059 43.478 0.00 0.00 36.32 5.07
7827 9450 4.732285 AGTGAAACACATGCTTCTAACG 57.268 40.909 4.75 0.00 41.43 3.18
7828 9451 7.331934 TCATCTAGTGAAACACATGCTTCTAAC 59.668 37.037 4.75 0.00 41.43 2.34
7829 9452 7.386059 TCATCTAGTGAAACACATGCTTCTAA 58.614 34.615 4.75 0.00 41.43 2.10
7830 9453 6.935167 TCATCTAGTGAAACACATGCTTCTA 58.065 36.000 4.75 0.00 41.43 2.10
7831 9454 5.798132 TCATCTAGTGAAACACATGCTTCT 58.202 37.500 4.75 0.00 41.43 2.85
7832 9455 6.674694 ATCATCTAGTGAAACACATGCTTC 57.325 37.500 4.75 0.00 40.97 3.86
7877 9500 2.097685 CGAGCTGATTCGATTGCTAACG 60.098 50.000 0.00 0.00 43.03 3.18
7915 9538 1.526575 CTCCCATGTGCCAAAACGCT 61.527 55.000 0.00 0.00 0.00 5.07
7938 9561 7.282901 AAAACACATTTTAAAAGCCAAGAGCAT 59.717 29.630 6.79 0.00 39.14 3.79
7939 9562 6.597280 AAAACACATTTTAAAAGCCAAGAGCA 59.403 30.769 6.79 0.00 39.14 4.26
7989 9613 4.754322 ACGAGCCAAGTTTTTGTTTGAAT 58.246 34.783 0.00 0.00 32.21 2.57
7991 9615 3.859411 ACGAGCCAAGTTTTTGTTTGA 57.141 38.095 0.00 0.00 32.21 2.69
7998 9622 2.993899 CGAGATGTACGAGCCAAGTTTT 59.006 45.455 0.00 0.00 0.00 2.43
8025 9649 4.572795 TGAAACGACTTTGTGAGCATGTAA 59.427 37.500 0.00 0.00 0.00 2.41
8031 9655 3.878086 TCATGAAACGACTTTGTGAGC 57.122 42.857 0.00 0.00 0.00 4.26
8048 9672 6.959311 GCGACACATAAGTTATCGTTTTTCAT 59.041 34.615 5.73 0.00 35.27 2.57
8050 9674 5.443763 CGCGACACATAAGTTATCGTTTTTC 59.556 40.000 0.00 0.25 35.27 2.29
8055 9680 2.456989 CCGCGACACATAAGTTATCGT 58.543 47.619 8.23 0.98 35.27 3.73
8059 9684 1.545136 TCACCCGCGACACATAAGTTA 59.455 47.619 8.23 0.00 0.00 2.24
8062 9687 1.434555 TTTCACCCGCGACACATAAG 58.565 50.000 8.23 0.00 0.00 1.73
8069 9694 0.099082 TTGTTGTTTTCACCCGCGAC 59.901 50.000 8.23 0.00 0.00 5.19
8075 9700 3.120041 CACCGGATTTGTTGTTTTCACC 58.880 45.455 9.46 0.00 0.00 4.02
8160 9785 2.599142 GCACGTCAAGTTTCGGAGAAAC 60.599 50.000 15.48 15.48 45.90 2.78
8171 9796 4.935205 ACATTATATGTGTGCACGTCAAGT 59.065 37.500 13.13 9.32 43.01 3.16
8275 9900 1.177401 GGAAATCTGTTGGTGCTCCC 58.823 55.000 1.59 0.00 0.00 4.30
8287 9912 3.576982 TGTGACTACTGTTCCGGAAATCT 59.423 43.478 20.79 6.22 0.00 2.40
8296 9921 5.767816 AAAATGGGTTGTGACTACTGTTC 57.232 39.130 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.