Multiple sequence alignment - TraesCS2D01G392400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G392400 chr2D 100.000 3577 0 0 1 3577 500361272 500364848 0.000000e+00 6606.0
1 TraesCS2D01G392400 chr2D 77.352 287 55 7 1 282 371930298 371930017 1.030000e-35 161.0
2 TraesCS2D01G392400 chr2B 95.057 3318 93 17 277 3577 588066319 588069582 0.000000e+00 5153.0
3 TraesCS2D01G392400 chr2B 86.972 284 30 3 1 282 588065885 588066163 2.680000e-81 313.0
4 TraesCS2D01G392400 chr2B 86.466 133 16 2 58 189 7649297 7649428 1.040000e-30 145.0
5 TraesCS2D01G392400 chr2B 100.000 29 0 0 87 115 70912668 70912696 2.000000e-03 54.7
6 TraesCS2D01G392400 chr2A 94.480 2971 86 36 277 3203 645310277 645313213 0.000000e+00 4506.0
7 TraesCS2D01G392400 chr2A 95.222 293 11 1 3285 3577 645313614 645313903 9.050000e-126 460.0
8 TraesCS2D01G392400 chr6D 83.386 632 78 17 1285 1907 342473082 342472469 8.670000e-156 560.0
9 TraesCS2D01G392400 chr6A 84.317 593 67 18 1325 1907 482620267 482619691 1.120000e-154 556.0
10 TraesCS2D01G392400 chr6B 86.759 506 52 12 1411 1907 516880223 516879724 1.880000e-152 549.0
11 TraesCS2D01G392400 chr6B 75.601 291 61 10 1 286 630451678 630451393 6.230000e-28 135.0
12 TraesCS2D01G392400 chrUn 87.705 366 41 4 1378 1742 365429983 365429621 1.190000e-114 424.0
13 TraesCS2D01G392400 chrUn 81.053 95 13 2 47 141 27584205 27584116 1.780000e-08 71.3
14 TraesCS2D01G392400 chr7D 89.908 327 33 0 1415 1741 10507710 10508036 4.270000e-114 422.0
15 TraesCS2D01G392400 chr7D 80.212 283 51 3 1 282 508896697 508896975 1.300000e-49 207.0
16 TraesCS2D01G392400 chr4B 87.432 366 42 4 1378 1742 641891329 641890967 5.520000e-113 418.0
17 TraesCS2D01G392400 chr5A 89.222 334 32 3 1411 1742 679875200 679874869 7.140000e-112 414.0
18 TraesCS2D01G392400 chr1D 77.255 255 53 4 10 262 361117022 361117273 1.040000e-30 145.0
19 TraesCS2D01G392400 chr7A 77.725 211 42 4 7 216 683505494 683505288 1.350000e-24 124.0
20 TraesCS2D01G392400 chr3A 78.528 163 31 4 3 162 384318279 384318118 1.760000e-18 104.0
21 TraesCS2D01G392400 chr3B 90.196 51 5 0 76 126 310362108 310362158 2.300000e-07 67.6
22 TraesCS2D01G392400 chr7B 100.000 28 0 0 2275 2302 607561519 607561492 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G392400 chr2D 500361272 500364848 3576 False 6606 6606 100.0000 1 3577 1 chr2D.!!$F1 3576
1 TraesCS2D01G392400 chr2B 588065885 588069582 3697 False 2733 5153 91.0145 1 3577 2 chr2B.!!$F3 3576
2 TraesCS2D01G392400 chr2A 645310277 645313903 3626 False 2483 4506 94.8510 277 3577 2 chr2A.!!$F1 3300
3 TraesCS2D01G392400 chr6D 342472469 342473082 613 True 560 560 83.3860 1285 1907 1 chr6D.!!$R1 622
4 TraesCS2D01G392400 chr6A 482619691 482620267 576 True 556 556 84.3170 1325 1907 1 chr6A.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 1077 0.106719 TCCCATGAATTCCTTCCCGC 60.107 55.0 2.27 0.0 0.0 6.13 F
1195 1410 0.831711 GAGATGGAGGAGGAGGAGGC 60.832 65.0 0.00 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2345 1.034356 TCGAGGTTGACTCCGAACAA 58.966 50.000 0.0 0.0 43.57 2.83 R
2619 2858 1.072015 AGCTGATTCTGGGATAGCTGC 59.928 52.381 0.0 0.0 42.63 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.900421 ACGTACCCCTAAGAACCAGC 59.100 55.000 0.00 0.00 0.00 4.85
24 25 2.124695 CCCTAAGAACCAGCGCCC 60.125 66.667 2.29 0.00 0.00 6.13
25 26 2.670148 CCCTAAGAACCAGCGCCCT 61.670 63.158 2.29 0.00 0.00 5.19
44 46 1.191489 TGGAGGCACAATCGTCCTCA 61.191 55.000 9.40 0.00 46.24 3.86
45 47 0.741221 GGAGGCACAATCGTCCTCAC 60.741 60.000 9.40 0.00 46.24 3.51
64 66 5.130145 CCTCACTGAACCCTTGAATAGATCT 59.870 44.000 0.00 0.00 0.00 2.75
70 72 4.429854 ACCCTTGAATAGATCTGAAGCC 57.570 45.455 5.18 0.00 0.00 4.35
72 74 3.497584 CCCTTGAATAGATCTGAAGCCCC 60.498 52.174 5.18 0.00 0.00 5.80
73 75 3.393941 CCTTGAATAGATCTGAAGCCCCT 59.606 47.826 5.18 0.00 0.00 4.79
84 86 1.177401 GAAGCCCCTGACACCAAATC 58.823 55.000 0.00 0.00 0.00 2.17
86 88 0.779997 AGCCCCTGACACCAAATCTT 59.220 50.000 0.00 0.00 0.00 2.40
89 91 2.162681 CCCCTGACACCAAATCTTGTC 58.837 52.381 0.00 0.00 42.18 3.18
96 98 4.275689 TGACACCAAATCTTGTCACATGAC 59.724 41.667 0.00 5.02 45.63 3.06
117 119 4.998051 ACAAGAAACCATAACCTCACCAT 58.002 39.130 0.00 0.00 0.00 3.55
118 120 5.010282 ACAAGAAACCATAACCTCACCATC 58.990 41.667 0.00 0.00 0.00 3.51
120 122 3.591527 AGAAACCATAACCTCACCATCCA 59.408 43.478 0.00 0.00 0.00 3.41
129 131 1.406069 CCTCACCATCCAAAGGAGACG 60.406 57.143 0.00 0.00 34.05 4.18
131 133 2.169352 CTCACCATCCAAAGGAGACGAT 59.831 50.000 0.00 0.00 34.05 3.73
133 135 3.384789 TCACCATCCAAAGGAGACGATAG 59.615 47.826 0.00 0.00 34.05 2.08
144 146 7.596995 CCAAAGGAGACGATAGAAATCTATGTC 59.403 40.741 7.65 13.42 39.14 3.06
146 148 5.413213 AGGAGACGATAGAAATCTATGTCGG 59.587 44.000 7.65 0.00 39.14 4.79
150 152 4.762765 ACGATAGAAATCTATGTCGGAGCT 59.237 41.667 7.65 0.00 39.14 4.09
151 153 5.106475 ACGATAGAAATCTATGTCGGAGCTC 60.106 44.000 4.71 4.71 39.14 4.09
152 154 5.646606 GATAGAAATCTATGTCGGAGCTCC 58.353 45.833 23.79 23.79 39.14 4.70
173 175 4.305001 CGTCGACTACGTATAGATGGAC 57.695 50.000 14.70 0.00 46.72 4.02
209 211 3.131396 TCGAAAGCTGGAAGACAAACTC 58.869 45.455 0.00 0.00 34.07 3.01
235 237 1.112315 AAAGCGTTGCCATTCACCCA 61.112 50.000 0.00 0.00 0.00 4.51
239 241 1.529226 CGTTGCCATTCACCCAAGTA 58.471 50.000 0.00 0.00 0.00 2.24
248 250 1.375523 CACCCAAGTACCGCACCTC 60.376 63.158 0.00 0.00 0.00 3.85
334 497 2.771763 AAGGGAACGAGCGAGCACAG 62.772 60.000 0.00 0.00 0.00 3.66
348 511 3.991051 ACAGACGGTGCACCCTCG 61.991 66.667 29.95 22.53 0.00 4.63
356 519 2.601666 TGCACCCTCGAGAGCACT 60.602 61.111 15.71 0.00 31.05 4.40
491 663 2.083167 AAAAATTAGGACCGACGCGA 57.917 45.000 15.93 0.00 0.00 5.87
492 664 1.353076 AAAATTAGGACCGACGCGAC 58.647 50.000 15.93 5.54 0.00 5.19
506 678 3.703420 GACGCGACCAATACAATACTCT 58.297 45.455 15.93 0.00 0.00 3.24
658 839 2.294512 TCTCTCACACACACACAGCTAG 59.705 50.000 0.00 0.00 0.00 3.42
676 857 3.552294 GCTAGAGCTTTTACTAACCGCTG 59.448 47.826 0.00 0.00 38.21 5.18
766 947 0.600557 ATCCGCCGTCTCATCTCATC 59.399 55.000 0.00 0.00 0.00 2.92
767 948 1.006805 CCGCCGTCTCATCTCATCC 60.007 63.158 0.00 0.00 0.00 3.51
768 949 1.006805 CGCCGTCTCATCTCATCCC 60.007 63.158 0.00 0.00 0.00 3.85
769 950 1.738346 CGCCGTCTCATCTCATCCCA 61.738 60.000 0.00 0.00 0.00 4.37
770 951 0.683973 GCCGTCTCATCTCATCCCAT 59.316 55.000 0.00 0.00 0.00 4.00
771 952 1.337635 GCCGTCTCATCTCATCCCATC 60.338 57.143 0.00 0.00 0.00 3.51
772 953 1.274728 CCGTCTCATCTCATCCCATCC 59.725 57.143 0.00 0.00 0.00 3.51
773 954 2.246469 CGTCTCATCTCATCCCATCCT 58.754 52.381 0.00 0.00 0.00 3.24
774 955 2.230992 CGTCTCATCTCATCCCATCCTC 59.769 54.545 0.00 0.00 0.00 3.71
775 956 2.566724 GTCTCATCTCATCCCATCCTCC 59.433 54.545 0.00 0.00 0.00 4.30
776 957 1.907936 CTCATCTCATCCCATCCTCCC 59.092 57.143 0.00 0.00 0.00 4.30
777 958 0.990374 CATCTCATCCCATCCTCCCC 59.010 60.000 0.00 0.00 0.00 4.81
778 959 0.574818 ATCTCATCCCATCCTCCCCA 59.425 55.000 0.00 0.00 0.00 4.96
874 1077 0.106719 TCCCATGAATTCCTTCCCGC 60.107 55.000 2.27 0.00 0.00 6.13
1195 1410 0.831711 GAGATGGAGGAGGAGGAGGC 60.832 65.000 0.00 0.00 0.00 4.70
1269 1490 3.450115 CGTCCTCCTCCCCGACAC 61.450 72.222 0.00 0.00 0.00 3.67
1272 1493 4.715130 CCTCCTCCCCGACACCCA 62.715 72.222 0.00 0.00 0.00 4.51
1505 1732 0.896940 ACGCCGAGAAGTACTTCCCA 60.897 55.000 28.05 0.00 40.33 4.37
2168 2401 2.853914 GGCGAGTCAAGCAACGAC 59.146 61.111 0.00 0.00 36.08 4.34
2312 2545 3.113191 TCATCCTCCAAGAGAGAAGCT 57.887 47.619 0.00 0.00 46.50 3.74
2479 2712 7.839907 TGATAGAAGCCAGCATTTAACATTTT 58.160 30.769 0.00 0.00 0.00 1.82
2480 2713 7.760794 TGATAGAAGCCAGCATTTAACATTTTG 59.239 33.333 0.00 0.00 0.00 2.44
2583 2822 7.439157 TCAATCAATTCTTCATGAGTTCGTT 57.561 32.000 0.00 0.00 0.00 3.85
2619 2858 4.631813 AGATTCCTTCATTTTCGGTCTTCG 59.368 41.667 0.00 0.00 40.90 3.79
2621 2860 1.804151 CCTTCATTTTCGGTCTTCGCA 59.196 47.619 0.00 0.00 39.05 5.10
2632 2871 0.747255 GTCTTCGCAGCTATCCCAGA 59.253 55.000 0.00 0.00 0.00 3.86
2635 2874 2.036475 TCTTCGCAGCTATCCCAGAATC 59.964 50.000 0.00 0.00 0.00 2.52
2685 2924 8.721133 ATTTTCCTTTACTAATTGGTTGGTCT 57.279 30.769 0.00 0.00 31.03 3.85
2754 2993 3.055891 CCTCTAAATTTGCAAACCCCCAG 60.056 47.826 15.41 8.03 0.00 4.45
2814 3057 1.202463 AGCGCAGTCTGATACACATCC 60.202 52.381 11.47 0.00 0.00 3.51
2815 3058 1.471501 GCGCAGTCTGATACACATCCA 60.472 52.381 0.30 0.00 0.00 3.41
2816 3059 2.804572 GCGCAGTCTGATACACATCCAT 60.805 50.000 0.30 0.00 0.00 3.41
2817 3060 3.055591 CGCAGTCTGATACACATCCATC 58.944 50.000 3.32 0.00 0.00 3.51
2875 3118 4.368391 CTGAACCTTCAGCGCAGT 57.632 55.556 11.47 0.00 46.97 4.40
2899 3142 0.883833 AGAAACAATGGCGAGGCAAG 59.116 50.000 2.86 2.35 0.00 4.01
2955 3198 1.754803 CCACCGGAGAAGCTACATACA 59.245 52.381 9.46 0.00 0.00 2.29
3010 3253 8.789767 ATCTGAGAGATCCTTAAATTCCTGTA 57.210 34.615 0.00 0.00 25.75 2.74
3011 3254 8.243961 TCTGAGAGATCCTTAAATTCCTGTAG 57.756 38.462 0.00 0.00 0.00 2.74
3012 3255 7.288852 TCTGAGAGATCCTTAAATTCCTGTAGG 59.711 40.741 0.00 0.00 0.00 3.18
3042 3285 6.664714 ACTCCTCTTCATTAGTACTGCTAGA 58.335 40.000 5.39 0.78 0.00 2.43
3077 3323 7.334421 CCGTATCTTATATTTATGTGCTTGGCT 59.666 37.037 0.00 0.00 0.00 4.75
3096 3342 5.219633 TGGCTTTCTTGCTTTTAATTCGTC 58.780 37.500 0.00 0.00 0.00 4.20
3158 3404 9.822185 ATATGCATAATTAGCTGATCGTAATGA 57.178 29.630 11.13 0.00 0.00 2.57
3283 3848 5.969435 GGCCAAATTATACGTCTAGTTTTGC 59.031 40.000 13.06 13.06 0.00 3.68
3301 3866 1.553690 GCTTGTCTGGGCCTGGAGTA 61.554 60.000 10.79 0.00 0.00 2.59
3360 3933 0.605319 TAAAGAAGGGGTGCAGTGCG 60.605 55.000 11.20 0.00 0.00 5.34
3403 3976 6.238293 GCCTTAACTTCTTTGTACGTCTGTTT 60.238 38.462 0.00 0.00 0.00 2.83
3419 3992 6.494146 ACGTCTGTTTAAAATTTATGGGGGAA 59.506 34.615 0.00 0.00 0.00 3.97
3552 4125 2.288666 TGTTGTCCTTTCTGTGTGAGC 58.711 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.460987 GAGGACGATTGTGCCTCCAG 60.461 60.000 15.58 0.00 41.84 3.86
25 26 1.191489 TGAGGACGATTGTGCCTCCA 61.191 55.000 20.29 7.95 46.01 3.86
27 28 0.247736 AGTGAGGACGATTGTGCCTC 59.752 55.000 18.00 18.00 46.60 4.70
28 29 0.036952 CAGTGAGGACGATTGTGCCT 60.037 55.000 0.13 2.58 37.08 4.75
30 31 1.461127 GTTCAGTGAGGACGATTGTGC 59.539 52.381 0.00 0.00 36.56 4.57
31 32 2.069273 GGTTCAGTGAGGACGATTGTG 58.931 52.381 0.00 0.00 0.00 3.33
32 33 1.002087 GGGTTCAGTGAGGACGATTGT 59.998 52.381 0.00 0.00 0.00 2.71
33 34 1.276421 AGGGTTCAGTGAGGACGATTG 59.724 52.381 0.00 0.00 0.00 2.67
34 35 1.645710 AGGGTTCAGTGAGGACGATT 58.354 50.000 0.00 0.00 0.00 3.34
44 46 6.627087 TTCAGATCTATTCAAGGGTTCAGT 57.373 37.500 0.00 0.00 0.00 3.41
45 47 5.526846 GCTTCAGATCTATTCAAGGGTTCAG 59.473 44.000 0.00 0.00 0.00 3.02
64 66 0.482446 ATTTGGTGTCAGGGGCTTCA 59.518 50.000 0.00 0.00 0.00 3.02
70 72 2.862541 TGACAAGATTTGGTGTCAGGG 58.137 47.619 2.48 0.00 46.97 4.45
89 91 5.473162 TGAGGTTATGGTTTCTTGTCATGTG 59.527 40.000 0.00 0.00 0.00 3.21
96 98 4.399303 GGATGGTGAGGTTATGGTTTCTTG 59.601 45.833 0.00 0.00 0.00 3.02
97 99 4.044065 TGGATGGTGAGGTTATGGTTTCTT 59.956 41.667 0.00 0.00 0.00 2.52
117 119 7.287927 ACATAGATTTCTATCGTCTCCTTTGGA 59.712 37.037 0.00 0.00 37.07 3.53
118 120 7.437748 ACATAGATTTCTATCGTCTCCTTTGG 58.562 38.462 0.00 0.00 37.07 3.28
120 122 7.364200 CGACATAGATTTCTATCGTCTCCTTT 58.636 38.462 17.88 0.00 37.07 3.11
129 131 5.646606 GGAGCTCCGACATAGATTTCTATC 58.353 45.833 19.06 0.00 37.07 2.08
153 155 3.983988 TCGTCCATCTATACGTAGTCGAC 59.016 47.826 7.70 7.70 43.93 4.20
193 195 2.365617 TCTTCGAGTTTGTCTTCCAGCT 59.634 45.455 0.00 0.00 0.00 4.24
196 198 5.448632 GCTTTTTCTTCGAGTTTGTCTTCCA 60.449 40.000 0.00 0.00 0.00 3.53
209 211 2.050477 ATGGCAACGCTTTTTCTTCG 57.950 45.000 0.00 0.00 42.51 3.79
235 237 0.251653 TCCTCAGAGGTGCGGTACTT 60.252 55.000 16.65 0.00 36.53 2.24
239 241 0.251653 TTAGTCCTCAGAGGTGCGGT 60.252 55.000 16.65 0.78 36.53 5.68
248 250 9.945904 AGTTTAGATTAGGTTTTTAGTCCTCAG 57.054 33.333 0.00 0.00 35.51 3.35
334 497 3.343788 CTCTCGAGGGTGCACCGTC 62.344 68.421 37.38 37.38 46.96 4.79
348 511 2.358003 AGCGTGCCAAGTGCTCTC 60.358 61.111 0.00 0.00 42.00 3.20
356 519 3.451141 AAAAATTGAAGAGCGTGCCAA 57.549 38.095 0.00 0.00 0.00 4.52
378 541 2.936919 TGCTCACCTGACTGTCAAAT 57.063 45.000 12.16 0.00 0.00 2.32
379 542 2.104622 TGATGCTCACCTGACTGTCAAA 59.895 45.455 12.16 0.00 0.00 2.69
382 545 2.277969 CATGATGCTCACCTGACTGTC 58.722 52.381 0.00 0.00 0.00 3.51
488 660 3.302480 CGCAAGAGTATTGTATTGGTCGC 60.302 47.826 0.00 0.00 43.02 5.19
489 661 3.302480 GCGCAAGAGTATTGTATTGGTCG 60.302 47.826 0.30 0.00 43.02 4.79
490 662 3.002348 GGCGCAAGAGTATTGTATTGGTC 59.998 47.826 10.83 0.00 43.02 4.02
491 663 2.943033 GGCGCAAGAGTATTGTATTGGT 59.057 45.455 10.83 0.00 43.02 3.67
492 664 2.942376 TGGCGCAAGAGTATTGTATTGG 59.058 45.455 10.83 0.00 43.02 3.16
506 678 0.446222 GCGTTATTCTTCTGGCGCAA 59.554 50.000 10.83 0.00 43.62 4.85
658 839 1.397343 GGCAGCGGTTAGTAAAAGCTC 59.603 52.381 9.60 6.25 35.82 4.09
676 857 3.177997 TCTTTTCTGCTTGTTTTGGGC 57.822 42.857 0.00 0.00 0.00 5.36
766 947 4.777546 TGGGGTGGGGAGGATGGG 62.778 72.222 0.00 0.00 0.00 4.00
767 948 3.420482 GTGGGGTGGGGAGGATGG 61.420 72.222 0.00 0.00 0.00 3.51
768 949 3.797353 CGTGGGGTGGGGAGGATG 61.797 72.222 0.00 0.00 0.00 3.51
777 958 4.444838 TTCGATCGGCGTGGGGTG 62.445 66.667 16.41 0.00 41.80 4.61
778 959 4.143333 CTTCGATCGGCGTGGGGT 62.143 66.667 16.41 0.00 41.80 4.95
810 995 4.124943 CTGGCTGGCTGGCTGGAT 62.125 66.667 18.27 0.00 42.34 3.41
874 1077 1.112315 CAGGAGGGGAGATGACGAGG 61.112 65.000 0.00 0.00 0.00 4.63
1095 1307 4.827087 CATGGCTCCTCGCAGCGT 62.827 66.667 15.93 0.00 40.68 5.07
1269 1490 3.003173 TGAAGGAGAGGCCGTGGG 61.003 66.667 0.00 0.00 43.43 4.61
1272 1493 3.764466 CGCTGAAGGAGAGGCCGT 61.764 66.667 0.00 0.00 43.43 5.68
2112 2345 1.034356 TCGAGGTTGACTCCGAACAA 58.966 50.000 0.00 0.00 43.57 2.83
2479 2712 2.666994 GGCCAAAACGAAAACGAAAACA 59.333 40.909 0.00 0.00 0.00 2.83
2480 2713 2.666994 TGGCCAAAACGAAAACGAAAAC 59.333 40.909 0.61 0.00 0.00 2.43
2619 2858 1.072015 AGCTGATTCTGGGATAGCTGC 59.928 52.381 0.00 0.00 42.63 5.25
2621 2860 2.776536 ACAAGCTGATTCTGGGATAGCT 59.223 45.455 0.00 0.00 45.87 3.32
2754 2993 1.946768 TCTTGGCCGTATTAATGCTGC 59.053 47.619 10.71 10.71 0.00 5.25
2814 3057 2.291365 TGATGCAAGTTCGGGATGATG 58.709 47.619 0.00 0.00 0.00 3.07
2815 3058 2.715749 TGATGCAAGTTCGGGATGAT 57.284 45.000 0.00 0.00 0.00 2.45
2816 3059 2.715749 ATGATGCAAGTTCGGGATGA 57.284 45.000 0.00 0.00 0.00 2.92
2817 3060 4.067192 TCATATGATGCAAGTTCGGGATG 58.933 43.478 0.00 0.00 0.00 3.51
2869 3112 2.578495 CATTGTTTCTGAGAACTGCGC 58.422 47.619 0.00 0.00 0.00 6.09
2875 3118 2.426522 CCTCGCCATTGTTTCTGAGAA 58.573 47.619 0.00 0.00 0.00 2.87
2899 3142 1.537202 GCTAATCCGCCATCAATGTCC 59.463 52.381 0.00 0.00 0.00 4.02
2955 3198 2.532843 AGGATTTGACCTGCAATGCTT 58.467 42.857 6.82 0.00 39.01 3.91
3012 3255 7.703197 GCAGTACTAATGAAGAGGAGTAAACTC 59.297 40.741 0.00 1.30 42.14 3.01
3042 3285 9.534565 CATAAATATAAGATACGGCATAGCAGT 57.465 33.333 0.00 0.00 40.45 4.40
3077 3323 7.253950 GCAAACTGACGAATTAAAAGCAAGAAA 60.254 33.333 0.00 0.00 0.00 2.52
3096 3342 5.851177 CGGTACAAAAAGTATCAGCAAACTG 59.149 40.000 0.00 0.00 45.95 3.16
3158 3404 5.030147 TGTACCAGTCCCTATGATCTTTGT 58.970 41.667 0.00 0.00 0.00 2.83
3283 3848 0.539051 CTACTCCAGGCCCAGACAAG 59.461 60.000 0.00 0.00 0.00 3.16
3301 3866 5.662674 AAAGAACTCTTGGAGCGTATACT 57.337 39.130 0.56 0.00 36.12 2.12
3403 3976 5.103258 CCTCCTCCTTCCCCCATAAATTTTA 60.103 44.000 0.00 0.00 0.00 1.52
3552 4125 1.882623 GGCCTTTGTCTTTCTCACTGG 59.117 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.