Multiple sequence alignment - TraesCS2D01G392300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G392300 chr2D 100.000 2198 0 0 1 2198 499752559 499750362 0.000000e+00 4060.0
1 TraesCS2D01G392300 chr2D 84.861 469 47 14 1 456 481652290 481652747 3.330000e-123 451.0
2 TraesCS2D01G392300 chr2D 88.380 284 16 10 2 269 186311898 186312180 2.100000e-85 326.0
3 TraesCS2D01G392300 chr2D 100.000 41 0 0 2158 2198 499744858 499744818 2.340000e-10 76.8
4 TraesCS2D01G392300 chr2A 90.965 1306 84 18 470 1759 644308813 644307526 0.000000e+00 1727.0
5 TraesCS2D01G392300 chr2A 84.322 472 48 11 1 456 198742104 198742565 2.590000e-119 438.0
6 TraesCS2D01G392300 chr2A 81.971 477 61 16 1 455 775590217 775589744 4.430000e-102 381.0
7 TraesCS2D01G392300 chr2B 89.655 1305 70 16 468 1767 587255670 587254426 0.000000e+00 1602.0
8 TraesCS2D01G392300 chr2B 89.258 391 27 4 1765 2155 587253860 587253485 1.970000e-130 475.0
9 TraesCS2D01G392300 chr2B 82.030 473 67 13 1 456 730644469 730644940 9.520000e-104 387.0
10 TraesCS2D01G392300 chr4D 88.172 465 36 10 1 456 289348729 289349183 8.930000e-149 536.0
11 TraesCS2D01G392300 chr4D 84.314 357 33 15 121 456 461778025 461778379 5.850000e-86 327.0
12 TraesCS2D01G392300 chr3D 85.062 482 45 12 1 456 555187882 555188362 1.190000e-127 466.0
13 TraesCS2D01G392300 chr3A 84.244 476 51 14 3 456 230986903 230987376 2.000000e-120 442.0
14 TraesCS2D01G392300 chr6D 83.932 473 52 19 1 453 291390546 291391014 4.340000e-117 431.0
15 TraesCS2D01G392300 chr5B 82.390 477 60 13 3 456 638767375 638767850 5.690000e-106 394.0
16 TraesCS2D01G392300 chr5B 77.944 467 78 15 1 456 598133734 598133282 3.600000e-68 268.0
17 TraesCS2D01G392300 chr6A 83.726 424 43 16 51 456 557143126 557142711 5.730000e-101 377.0
18 TraesCS2D01G392300 chr4B 85.399 363 50 2 1759 2121 456604256 456603897 7.410000e-100 374.0
19 TraesCS2D01G392300 chr7D 80.962 478 65 20 1 456 84419248 84419721 2.680000e-94 355.0
20 TraesCS2D01G392300 chr1D 82.637 311 34 18 169 463 463924938 463924632 7.790000e-65 257.0
21 TraesCS2D01G392300 chr5A 97.561 41 1 0 2158 2198 350807480 350807520 1.090000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G392300 chr2D 499750362 499752559 2197 True 4060.0 4060 100.0000 1 2198 1 chr2D.!!$R2 2197
1 TraesCS2D01G392300 chr2A 644307526 644308813 1287 True 1727.0 1727 90.9650 470 1759 1 chr2A.!!$R1 1289
2 TraesCS2D01G392300 chr2B 587253485 587255670 2185 True 1038.5 1602 89.4565 468 2155 2 chr2B.!!$R1 1687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.035458 GCATAGCTGGGGCGTAATCT 59.965 55.0 0.0 0.0 44.37 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1609 0.035317 CCAGCCACAACAGTCTAGCA 59.965 55.0 0.0 0.0 0.0 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.518998 CGAGGAGGACGGCGTCAT 61.519 66.667 37.13 33.17 33.68 3.06
26 27 2.413765 GAGGAGGACGGCGTCATC 59.586 66.667 37.74 37.74 41.78 2.92
27 28 3.471244 GAGGAGGACGGCGTCATCG 62.471 68.421 37.53 0.70 43.16 3.84
28 29 3.823330 GGAGGACGGCGTCATCGT 61.823 66.667 37.53 22.08 43.16 3.73
33 34 4.175489 ACGGCGTCATCGTCCTCG 62.175 66.667 6.77 0.00 38.56 4.63
48 49 2.745100 TCGACACCGACGAGGAGG 60.745 66.667 8.56 0.00 45.00 4.30
49 50 3.812019 CGACACCGACGAGGAGGG 61.812 72.222 8.56 1.29 45.00 4.30
50 51 4.131088 GACACCGACGAGGAGGGC 62.131 72.222 8.56 0.00 45.00 5.19
89 90 4.101790 CCACCACGCATCGGCAAC 62.102 66.667 0.00 0.00 41.24 4.17
90 91 4.101790 CACCACGCATCGGCAACC 62.102 66.667 0.00 0.00 41.24 3.77
93 94 3.803082 CACGCATCGGCAACCCTG 61.803 66.667 0.00 0.00 41.24 4.45
108 109 3.390521 CTGGCGAGGGGTGCAGTA 61.391 66.667 0.00 0.00 0.00 2.74
109 110 3.376935 CTGGCGAGGGGTGCAGTAG 62.377 68.421 0.00 0.00 0.00 2.57
110 111 4.162690 GGCGAGGGGTGCAGTAGG 62.163 72.222 0.00 0.00 0.00 3.18
111 112 4.162690 GCGAGGGGTGCAGTAGGG 62.163 72.222 0.00 0.00 0.00 3.53
112 113 2.363795 CGAGGGGTGCAGTAGGGA 60.364 66.667 0.00 0.00 0.00 4.20
113 114 2.722201 CGAGGGGTGCAGTAGGGAC 61.722 68.421 0.00 0.00 37.06 4.46
114 115 2.683933 AGGGGTGCAGTAGGGACG 60.684 66.667 0.00 0.00 39.01 4.79
115 116 3.782443 GGGGTGCAGTAGGGACGG 61.782 72.222 0.00 0.00 39.01 4.79
116 117 3.001406 GGGTGCAGTAGGGACGGT 61.001 66.667 0.00 0.00 39.01 4.83
117 118 2.264794 GGTGCAGTAGGGACGGTG 59.735 66.667 0.00 0.00 39.01 4.94
118 119 2.264794 GTGCAGTAGGGACGGTGG 59.735 66.667 0.00 0.00 0.00 4.61
119 120 3.702048 TGCAGTAGGGACGGTGGC 61.702 66.667 0.00 0.00 0.00 5.01
120 121 4.814294 GCAGTAGGGACGGTGGCG 62.814 72.222 0.00 0.00 0.00 5.69
121 122 4.143333 CAGTAGGGACGGTGGCGG 62.143 72.222 0.00 0.00 0.00 6.13
161 162 2.505557 GGCGACGACTTACACCCG 60.506 66.667 0.00 0.00 0.00 5.28
162 163 2.256461 GCGACGACTTACACCCGT 59.744 61.111 0.00 0.00 39.41 5.28
163 164 1.372128 GCGACGACTTACACCCGTT 60.372 57.895 0.00 0.00 36.60 4.44
164 165 0.940991 GCGACGACTTACACCCGTTT 60.941 55.000 0.00 0.00 36.60 3.60
165 166 1.055338 CGACGACTTACACCCGTTTC 58.945 55.000 0.00 0.00 36.60 2.78
166 167 1.335324 CGACGACTTACACCCGTTTCT 60.335 52.381 0.00 0.00 36.60 2.52
167 168 2.095768 CGACGACTTACACCCGTTTCTA 60.096 50.000 0.00 0.00 36.60 2.10
168 169 3.237628 GACGACTTACACCCGTTTCTAC 58.762 50.000 0.00 0.00 36.60 2.59
169 170 2.622942 ACGACTTACACCCGTTTCTACA 59.377 45.455 0.00 0.00 32.03 2.74
170 171 3.240069 CGACTTACACCCGTTTCTACAG 58.760 50.000 0.00 0.00 0.00 2.74
171 172 3.582780 GACTTACACCCGTTTCTACAGG 58.417 50.000 0.00 0.00 0.00 4.00
172 173 2.289257 ACTTACACCCGTTTCTACAGGC 60.289 50.000 0.00 0.00 0.00 4.85
173 174 1.636148 TACACCCGTTTCTACAGGCT 58.364 50.000 0.00 0.00 0.00 4.58
174 175 0.320697 ACACCCGTTTCTACAGGCTC 59.679 55.000 0.00 0.00 0.00 4.70
175 176 0.391263 CACCCGTTTCTACAGGCTCC 60.391 60.000 0.00 0.00 0.00 4.70
176 177 0.544595 ACCCGTTTCTACAGGCTCCT 60.545 55.000 0.00 0.00 0.00 3.69
177 178 0.175989 CCCGTTTCTACAGGCTCCTC 59.824 60.000 0.00 0.00 0.00 3.71
178 179 0.179134 CCGTTTCTACAGGCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
179 180 0.179134 CGTTTCTACAGGCTCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
180 181 0.460459 GTTTCTACAGGCTCCTCGGC 60.460 60.000 0.00 0.00 38.75 5.54
181 182 0.902984 TTTCTACAGGCTCCTCGGCA 60.903 55.000 0.00 0.00 41.46 5.69
182 183 0.687757 TTCTACAGGCTCCTCGGCAT 60.688 55.000 0.00 0.00 41.46 4.40
185 186 3.220222 CAGGCTCCTCGGCATGTA 58.780 61.111 0.00 0.00 38.88 2.29
186 187 1.068753 CAGGCTCCTCGGCATGTAG 59.931 63.158 0.00 0.00 38.88 2.74
187 188 1.075970 AGGCTCCTCGGCATGTAGA 60.076 57.895 0.00 0.00 41.46 2.59
188 189 0.470833 AGGCTCCTCGGCATGTAGAT 60.471 55.000 0.00 0.00 41.46 1.98
189 190 0.320247 GGCTCCTCGGCATGTAGATG 60.320 60.000 0.00 0.00 38.25 2.90
190 191 0.320247 GCTCCTCGGCATGTAGATGG 60.320 60.000 1.57 0.00 0.00 3.51
195 196 2.510906 GGCATGTAGATGGCGGGT 59.489 61.111 10.76 0.00 44.46 5.28
196 197 1.893808 GGCATGTAGATGGCGGGTG 60.894 63.158 10.76 0.00 44.46 4.61
197 198 1.893808 GCATGTAGATGGCGGGTGG 60.894 63.158 1.57 0.00 0.00 4.61
198 199 1.893808 CATGTAGATGGCGGGTGGC 60.894 63.158 0.00 0.00 42.51 5.01
199 200 3.460672 ATGTAGATGGCGGGTGGCG 62.461 63.158 0.00 0.00 44.92 5.69
200 201 4.910585 GTAGATGGCGGGTGGCGG 62.911 72.222 0.00 0.00 44.92 6.13
221 222 3.923864 CGGCATAGCTGGGGCGTA 61.924 66.667 21.76 0.00 46.42 4.42
222 223 2.508928 GGCATAGCTGGGGCGTAA 59.491 61.111 0.00 0.00 44.37 3.18
223 224 1.073199 GGCATAGCTGGGGCGTAAT 59.927 57.895 0.00 0.00 44.37 1.89
224 225 0.955919 GGCATAGCTGGGGCGTAATC 60.956 60.000 0.00 0.00 44.37 1.75
225 226 0.035458 GCATAGCTGGGGCGTAATCT 59.965 55.000 0.00 0.00 44.37 2.40
226 227 1.275291 GCATAGCTGGGGCGTAATCTA 59.725 52.381 0.00 0.00 44.37 1.98
227 228 2.675317 GCATAGCTGGGGCGTAATCTAG 60.675 54.545 0.00 0.00 44.37 2.43
228 229 1.629043 TAGCTGGGGCGTAATCTAGG 58.371 55.000 0.00 0.00 44.37 3.02
229 230 1.301795 GCTGGGGCGTAATCTAGGC 60.302 63.158 0.00 0.00 38.75 3.93
230 231 1.006102 CTGGGGCGTAATCTAGGCG 60.006 63.158 0.00 0.00 40.27 5.52
231 232 1.745320 CTGGGGCGTAATCTAGGCGT 61.745 60.000 0.00 0.00 40.27 5.68
232 233 0.467844 TGGGGCGTAATCTAGGCGTA 60.468 55.000 0.00 0.00 40.27 4.42
233 234 0.243095 GGGGCGTAATCTAGGCGTAG 59.757 60.000 7.12 7.12 40.27 3.51
234 235 0.957362 GGGCGTAATCTAGGCGTAGT 59.043 55.000 12.88 0.00 40.27 2.73
235 236 1.339291 GGGCGTAATCTAGGCGTAGTT 59.661 52.381 12.88 9.20 40.27 2.24
236 237 2.223900 GGGCGTAATCTAGGCGTAGTTT 60.224 50.000 12.88 12.86 40.27 2.66
237 238 2.793232 GGCGTAATCTAGGCGTAGTTTG 59.207 50.000 16.37 5.52 40.27 2.93
238 239 2.218075 GCGTAATCTAGGCGTAGTTTGC 59.782 50.000 16.37 14.40 0.00 3.68
239 240 3.441163 CGTAATCTAGGCGTAGTTTGCA 58.559 45.455 18.85 0.00 0.00 4.08
240 241 4.049186 CGTAATCTAGGCGTAGTTTGCAT 58.951 43.478 18.85 3.43 0.00 3.96
241 242 4.085055 CGTAATCTAGGCGTAGTTTGCATG 60.085 45.833 18.85 0.00 0.00 4.06
242 243 3.543680 ATCTAGGCGTAGTTTGCATGT 57.456 42.857 12.88 0.00 0.00 3.21
243 244 3.328382 TCTAGGCGTAGTTTGCATGTT 57.672 42.857 12.88 0.00 0.00 2.71
244 245 3.670625 TCTAGGCGTAGTTTGCATGTTT 58.329 40.909 12.88 0.00 0.00 2.83
245 246 4.823157 TCTAGGCGTAGTTTGCATGTTTA 58.177 39.130 12.88 0.00 0.00 2.01
246 247 5.424757 TCTAGGCGTAGTTTGCATGTTTAT 58.575 37.500 12.88 0.00 0.00 1.40
247 248 4.616181 AGGCGTAGTTTGCATGTTTATC 57.384 40.909 0.00 0.00 0.00 1.75
248 249 4.261801 AGGCGTAGTTTGCATGTTTATCT 58.738 39.130 0.00 0.00 0.00 1.98
249 250 4.700213 AGGCGTAGTTTGCATGTTTATCTT 59.300 37.500 0.00 0.00 0.00 2.40
250 251 5.183140 AGGCGTAGTTTGCATGTTTATCTTT 59.817 36.000 0.00 0.00 0.00 2.52
251 252 5.861787 GGCGTAGTTTGCATGTTTATCTTTT 59.138 36.000 0.00 0.00 0.00 2.27
252 253 6.364976 GGCGTAGTTTGCATGTTTATCTTTTT 59.635 34.615 0.00 0.00 0.00 1.94
274 275 7.962934 TTTTTACAAATTCTATGAATCGCCG 57.037 32.000 0.00 0.00 0.00 6.46
275 276 6.912203 TTTACAAATTCTATGAATCGCCGA 57.088 33.333 0.00 0.00 0.00 5.54
276 277 6.525121 TTACAAATTCTATGAATCGCCGAG 57.475 37.500 0.00 0.00 0.00 4.63
277 278 4.442706 ACAAATTCTATGAATCGCCGAGT 58.557 39.130 0.00 0.00 0.00 4.18
278 279 4.876107 ACAAATTCTATGAATCGCCGAGTT 59.124 37.500 0.00 0.00 0.00 3.01
279 280 5.354234 ACAAATTCTATGAATCGCCGAGTTT 59.646 36.000 0.00 0.00 0.00 2.66
280 281 5.409643 AATTCTATGAATCGCCGAGTTTG 57.590 39.130 0.00 0.00 0.00 2.93
281 282 3.520290 TCTATGAATCGCCGAGTTTGT 57.480 42.857 0.00 0.00 0.00 2.83
282 283 3.186909 TCTATGAATCGCCGAGTTTGTG 58.813 45.455 0.00 0.00 0.00 3.33
283 284 0.447801 ATGAATCGCCGAGTTTGTGC 59.552 50.000 0.00 0.00 0.00 4.57
284 285 0.882484 TGAATCGCCGAGTTTGTGCA 60.882 50.000 0.00 0.00 0.00 4.57
285 286 0.237235 GAATCGCCGAGTTTGTGCAA 59.763 50.000 0.00 0.00 0.00 4.08
286 287 0.238289 AATCGCCGAGTTTGTGCAAG 59.762 50.000 0.00 0.00 0.00 4.01
287 288 0.602638 ATCGCCGAGTTTGTGCAAGA 60.603 50.000 0.00 0.00 0.00 3.02
288 289 0.602638 TCGCCGAGTTTGTGCAAGAT 60.603 50.000 0.00 0.00 0.00 2.40
289 290 0.179215 CGCCGAGTTTGTGCAAGATC 60.179 55.000 0.00 0.00 0.00 2.75
290 291 0.179215 GCCGAGTTTGTGCAAGATCG 60.179 55.000 11.38 11.38 33.05 3.69
291 292 1.148310 CCGAGTTTGTGCAAGATCGT 58.852 50.000 14.87 0.00 32.06 3.73
292 293 1.126846 CCGAGTTTGTGCAAGATCGTC 59.873 52.381 14.87 0.00 32.06 4.20
293 294 1.201704 CGAGTTTGTGCAAGATCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
294 295 2.058798 GAGTTTGTGCAAGATCGTCGA 58.941 47.619 0.00 0.00 0.00 4.20
295 296 2.061773 AGTTTGTGCAAGATCGTCGAG 58.938 47.619 0.00 0.00 0.00 4.04
296 297 1.792949 GTTTGTGCAAGATCGTCGAGT 59.207 47.619 0.00 0.00 0.00 4.18
297 298 1.698165 TTGTGCAAGATCGTCGAGTC 58.302 50.000 0.00 0.00 0.00 3.36
298 299 0.881796 TGTGCAAGATCGTCGAGTCT 59.118 50.000 0.00 1.45 0.00 3.24
299 300 1.263776 GTGCAAGATCGTCGAGTCTG 58.736 55.000 0.00 0.00 0.00 3.51
300 301 0.881796 TGCAAGATCGTCGAGTCTGT 59.118 50.000 0.00 0.00 0.00 3.41
301 302 1.269723 TGCAAGATCGTCGAGTCTGTT 59.730 47.619 0.00 0.00 0.00 3.16
302 303 2.288213 TGCAAGATCGTCGAGTCTGTTT 60.288 45.455 0.00 0.00 0.00 2.83
303 304 3.057806 TGCAAGATCGTCGAGTCTGTTTA 60.058 43.478 0.00 0.00 0.00 2.01
304 305 3.918591 GCAAGATCGTCGAGTCTGTTTAA 59.081 43.478 0.00 0.00 0.00 1.52
305 306 4.384846 GCAAGATCGTCGAGTCTGTTTAAA 59.615 41.667 0.00 0.00 0.00 1.52
306 307 5.062308 GCAAGATCGTCGAGTCTGTTTAAAT 59.938 40.000 0.00 0.00 0.00 1.40
307 308 6.401153 GCAAGATCGTCGAGTCTGTTTAAATT 60.401 38.462 0.00 0.00 0.00 1.82
308 309 7.510630 CAAGATCGTCGAGTCTGTTTAAATTT 58.489 34.615 0.00 0.00 0.00 1.82
309 310 7.279470 AGATCGTCGAGTCTGTTTAAATTTC 57.721 36.000 0.00 0.00 0.00 2.17
310 311 7.091443 AGATCGTCGAGTCTGTTTAAATTTCT 58.909 34.615 0.00 0.00 0.00 2.52
311 312 8.242053 AGATCGTCGAGTCTGTTTAAATTTCTA 58.758 33.333 0.00 0.00 0.00 2.10
312 313 8.928270 ATCGTCGAGTCTGTTTAAATTTCTAT 57.072 30.769 0.00 0.00 0.00 1.98
313 314 8.169839 TCGTCGAGTCTGTTTAAATTTCTATG 57.830 34.615 0.00 0.00 0.00 2.23
314 315 8.024865 TCGTCGAGTCTGTTTAAATTTCTATGA 58.975 33.333 0.00 0.00 0.00 2.15
315 316 8.644619 CGTCGAGTCTGTTTAAATTTCTATGAA 58.355 33.333 0.00 0.00 0.00 2.57
324 325 9.658475 TGTTTAAATTTCTATGAAATATCGCCG 57.342 29.630 6.04 0.00 0.00 6.46
325 326 9.872757 GTTTAAATTTCTATGAAATATCGCCGA 57.127 29.630 6.04 0.00 0.00 5.54
327 328 7.730364 AAATTTCTATGAAATATCGCCGAGT 57.270 32.000 6.04 0.00 0.00 4.18
328 329 7.730364 AATTTCTATGAAATATCGCCGAGTT 57.270 32.000 6.04 0.00 0.00 3.01
329 330 6.764877 TTTCTATGAAATATCGCCGAGTTC 57.235 37.500 0.00 0.00 0.00 3.01
330 331 4.473199 TCTATGAAATATCGCCGAGTTCG 58.527 43.478 0.00 0.00 39.44 3.95
331 332 1.205657 TGAAATATCGCCGAGTTCGC 58.794 50.000 0.00 0.00 38.18 4.70
332 333 1.205657 GAAATATCGCCGAGTTCGCA 58.794 50.000 0.00 0.00 38.18 5.10
333 334 0.928229 AAATATCGCCGAGTTCGCAC 59.072 50.000 0.00 0.00 38.18 5.34
334 335 1.206745 AATATCGCCGAGTTCGCACG 61.207 55.000 0.00 8.31 38.26 5.34
335 336 2.055310 ATATCGCCGAGTTCGCACGA 62.055 55.000 16.28 16.28 45.31 4.35
336 337 3.411418 ATCGCCGAGTTCGCACGAT 62.411 57.895 18.51 18.51 45.15 3.73
337 338 2.884087 ATCGCCGAGTTCGCACGATT 62.884 55.000 18.51 8.48 46.83 3.34
338 339 2.726691 CGCCGAGTTCGCACGATTT 61.727 57.895 8.79 0.00 38.88 2.17
339 340 1.495951 GCCGAGTTCGCACGATTTT 59.504 52.632 0.00 0.00 38.18 1.82
340 341 0.789383 GCCGAGTTCGCACGATTTTG 60.789 55.000 0.00 0.00 38.18 2.44
341 342 0.179225 CCGAGTTCGCACGATTTTGG 60.179 55.000 0.00 0.00 38.18 3.28
342 343 0.789383 CGAGTTCGCACGATTTTGGC 60.789 55.000 0.00 0.00 33.04 4.52
343 344 0.237235 GAGTTCGCACGATTTTGGCA 59.763 50.000 0.00 0.00 0.00 4.92
344 345 0.238289 AGTTCGCACGATTTTGGCAG 59.762 50.000 0.00 0.00 0.00 4.85
345 346 1.081509 TTCGCACGATTTTGGCAGC 60.082 52.632 0.00 0.00 0.00 5.25
346 347 2.778551 TTCGCACGATTTTGGCAGCG 62.779 55.000 8.50 8.50 45.79 5.18
347 348 2.560861 GCACGATTTTGGCAGCGA 59.439 55.556 7.85 0.00 0.00 4.93
348 349 1.797537 GCACGATTTTGGCAGCGAC 60.798 57.895 7.85 0.00 0.00 5.19
349 350 1.154225 CACGATTTTGGCAGCGACC 60.154 57.895 7.85 0.00 0.00 4.79
350 351 1.302511 ACGATTTTGGCAGCGACCT 60.303 52.632 7.85 0.00 0.00 3.85
351 352 1.135315 CGATTTTGGCAGCGACCTG 59.865 57.895 0.00 0.00 42.13 4.00
352 353 1.298157 CGATTTTGGCAGCGACCTGA 61.298 55.000 0.00 0.00 41.77 3.86
353 354 0.449388 GATTTTGGCAGCGACCTGAG 59.551 55.000 0.00 0.00 41.77 3.35
354 355 0.962356 ATTTTGGCAGCGACCTGAGG 60.962 55.000 0.00 0.00 41.77 3.86
355 356 3.551496 TTTGGCAGCGACCTGAGGG 62.551 63.158 2.38 0.00 41.77 4.30
359 360 4.803426 CAGCGACCTGAGGGCGTC 62.803 72.222 29.52 20.17 41.77 5.19
363 364 3.063084 GACCTGAGGGCGTCGACT 61.063 66.667 14.70 0.00 35.63 4.18
364 365 3.343788 GACCTGAGGGCGTCGACTG 62.344 68.421 14.70 8.46 35.63 3.51
365 366 4.135153 CCTGAGGGCGTCGACTGG 62.135 72.222 14.70 0.00 0.00 4.00
366 367 3.062466 CTGAGGGCGTCGACTGGA 61.062 66.667 14.70 0.00 0.00 3.86
367 368 2.599281 TGAGGGCGTCGACTGGAA 60.599 61.111 14.70 0.00 0.00 3.53
368 369 2.154798 CTGAGGGCGTCGACTGGAAA 62.155 60.000 14.70 0.00 0.00 3.13
369 370 1.737008 GAGGGCGTCGACTGGAAAC 60.737 63.158 14.70 0.00 0.00 2.78
370 371 2.741211 GGGCGTCGACTGGAAACC 60.741 66.667 14.70 5.16 0.00 3.27
371 372 2.029964 GGCGTCGACTGGAAACCA 59.970 61.111 14.70 0.00 0.00 3.67
372 373 1.595929 GGCGTCGACTGGAAACCAA 60.596 57.895 14.70 0.00 30.80 3.67
373 374 0.953960 GGCGTCGACTGGAAACCAAT 60.954 55.000 14.70 0.00 30.80 3.16
374 375 0.442699 GCGTCGACTGGAAACCAATC 59.557 55.000 14.70 0.00 30.80 2.67
377 378 1.794222 CGACTGGAAACCAATCGCC 59.206 57.895 8.56 0.00 45.68 5.54
378 379 0.673644 CGACTGGAAACCAATCGCCT 60.674 55.000 8.56 0.00 45.68 5.52
379 380 1.087501 GACTGGAAACCAATCGCCTC 58.912 55.000 0.00 0.00 30.80 4.70
380 381 0.322546 ACTGGAAACCAATCGCCTCC 60.323 55.000 0.00 0.00 30.80 4.30
381 382 0.322456 CTGGAAACCAATCGCCTCCA 60.322 55.000 0.00 0.00 34.97 3.86
382 383 0.322456 TGGAAACCAATCGCCTCCAG 60.322 55.000 0.00 0.00 32.42 3.86
383 384 1.032114 GGAAACCAATCGCCTCCAGG 61.032 60.000 0.00 0.00 38.53 4.45
401 402 4.101790 CGCCAAGCAAACGCCGAT 62.102 61.111 0.00 0.00 0.00 4.18
402 403 2.258286 GCCAAGCAAACGCCGATT 59.742 55.556 0.00 0.00 0.00 3.34
403 404 1.801512 GCCAAGCAAACGCCGATTC 60.802 57.895 0.00 0.00 0.00 2.52
404 405 1.578926 CCAAGCAAACGCCGATTCA 59.421 52.632 0.00 0.00 0.00 2.57
405 406 0.454957 CCAAGCAAACGCCGATTCAG 60.455 55.000 0.00 0.00 0.00 3.02
406 407 0.238289 CAAGCAAACGCCGATTCAGT 59.762 50.000 0.00 0.00 0.00 3.41
407 408 0.517316 AAGCAAACGCCGATTCAGTC 59.483 50.000 0.00 0.00 0.00 3.51
408 409 1.134694 GCAAACGCCGATTCAGTCC 59.865 57.895 0.00 0.00 0.00 3.85
409 410 1.794222 CAAACGCCGATTCAGTCCC 59.206 57.895 0.00 0.00 0.00 4.46
410 411 0.953471 CAAACGCCGATTCAGTCCCA 60.953 55.000 0.00 0.00 0.00 4.37
411 412 0.673644 AAACGCCGATTCAGTCCCAG 60.674 55.000 0.00 0.00 0.00 4.45
412 413 2.202932 CGCCGATTCAGTCCCAGG 60.203 66.667 0.00 0.00 0.00 4.45
413 414 2.514824 GCCGATTCAGTCCCAGGC 60.515 66.667 0.00 0.00 37.61 4.85
414 415 2.202932 CCGATTCAGTCCCAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
415 416 2.202932 CGATTCAGTCCCAGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
416 417 2.514824 GATTCAGTCCCAGGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
417 418 3.011517 ATTCAGTCCCAGGCGGCT 61.012 61.111 5.25 5.25 0.00 5.52
418 419 2.543067 GATTCAGTCCCAGGCGGCTT 62.543 60.000 9.66 0.00 0.00 4.35
419 420 2.142292 ATTCAGTCCCAGGCGGCTTT 62.142 55.000 9.66 0.00 0.00 3.51
420 421 2.282462 CAGTCCCAGGCGGCTTTT 60.282 61.111 9.66 0.00 0.00 2.27
421 422 1.903404 CAGTCCCAGGCGGCTTTTT 60.903 57.895 9.66 0.00 0.00 1.94
437 438 2.547026 TTTTTCGGCGTCTTAGGGC 58.453 52.632 6.85 0.00 0.00 5.19
438 439 0.956902 TTTTTCGGCGTCTTAGGGCC 60.957 55.000 6.85 0.00 45.95 5.80
442 443 2.510918 GGCGTCTTAGGGCCGAAC 60.511 66.667 0.00 0.00 39.93 3.95
443 444 2.884207 GCGTCTTAGGGCCGAACG 60.884 66.667 15.40 15.40 0.00 3.95
444 445 2.202703 CGTCTTAGGGCCGAACGG 60.203 66.667 9.00 9.00 38.57 4.44
454 455 3.093278 CCGAACGGCTGAAGATGC 58.907 61.111 0.00 0.00 0.00 3.91
455 456 1.448540 CCGAACGGCTGAAGATGCT 60.449 57.895 0.00 0.00 0.00 3.79
456 457 0.179111 CCGAACGGCTGAAGATGCTA 60.179 55.000 0.00 0.00 0.00 3.49
457 458 0.924090 CGAACGGCTGAAGATGCTAC 59.076 55.000 0.00 0.00 0.00 3.58
458 459 1.469940 CGAACGGCTGAAGATGCTACT 60.470 52.381 0.00 0.00 0.00 2.57
459 460 1.929836 GAACGGCTGAAGATGCTACTG 59.070 52.381 0.00 0.00 0.00 2.74
460 461 0.898320 ACGGCTGAAGATGCTACTGT 59.102 50.000 0.00 0.00 0.00 3.55
461 462 2.100197 ACGGCTGAAGATGCTACTGTA 58.900 47.619 0.00 0.00 0.00 2.74
462 463 2.695666 ACGGCTGAAGATGCTACTGTAT 59.304 45.455 0.00 0.00 0.00 2.29
463 464 3.055591 CGGCTGAAGATGCTACTGTATG 58.944 50.000 0.00 0.00 0.00 2.39
464 465 2.805099 GGCTGAAGATGCTACTGTATGC 59.195 50.000 0.00 0.00 0.00 3.14
465 466 2.474359 GCTGAAGATGCTACTGTATGCG 59.526 50.000 0.00 0.00 0.00 4.73
466 467 2.473816 TGAAGATGCTACTGTATGCGC 58.526 47.619 0.00 0.00 0.00 6.09
467 468 1.453524 GAAGATGCTACTGTATGCGCG 59.546 52.381 0.00 0.00 0.00 6.86
468 469 0.385751 AGATGCTACTGTATGCGCGT 59.614 50.000 8.43 7.55 0.00 6.01
469 470 0.504384 GATGCTACTGTATGCGCGTG 59.496 55.000 13.61 0.00 0.00 5.34
470 471 1.490693 ATGCTACTGTATGCGCGTGC 61.491 55.000 15.48 15.48 43.20 5.34
471 472 2.871427 GCTACTGTATGCGCGTGCC 61.871 63.158 19.87 3.33 41.78 5.01
472 473 1.518352 CTACTGTATGCGCGTGCCA 60.518 57.895 19.87 8.40 41.78 4.92
473 474 0.875908 CTACTGTATGCGCGTGCCAT 60.876 55.000 19.87 14.03 41.78 4.40
551 552 0.955428 TGTCAGAATTCCAGCGGTGC 60.955 55.000 9.63 0.00 0.00 5.01
561 562 1.939785 CAGCGGTGCTCGTCGTATC 60.940 63.158 0.00 0.00 36.40 2.24
567 569 1.002684 GGTGCTCGTCGTATCACCTAG 60.003 57.143 18.77 0.00 44.09 3.02
656 658 4.560743 TTCACGGCAGCAGCACCA 62.561 61.111 2.65 0.00 44.61 4.17
851 853 1.508808 TTTTAAAAGCCGCGGACGCT 61.509 50.000 33.48 17.00 39.32 5.07
861 868 2.811317 CGGACGCTTGCTCACCTC 60.811 66.667 0.00 0.00 0.00 3.85
862 869 2.435059 GGACGCTTGCTCACCTCC 60.435 66.667 0.00 0.00 0.00 4.30
909 916 4.220693 TCCACATCCACATCCAAAGTAG 57.779 45.455 0.00 0.00 0.00 2.57
910 917 3.843619 TCCACATCCACATCCAAAGTAGA 59.156 43.478 0.00 0.00 0.00 2.59
911 918 4.080919 TCCACATCCACATCCAAAGTAGAG 60.081 45.833 0.00 0.00 0.00 2.43
912 919 4.323792 CCACATCCACATCCAAAGTAGAGT 60.324 45.833 0.00 0.00 0.00 3.24
913 920 5.104941 CCACATCCACATCCAAAGTAGAGTA 60.105 44.000 0.00 0.00 0.00 2.59
914 921 5.812642 CACATCCACATCCAAAGTAGAGTAC 59.187 44.000 0.00 0.00 0.00 2.73
932 939 1.227999 ACACACACAAATCCCGAGCG 61.228 55.000 0.00 0.00 0.00 5.03
993 1000 3.011760 GCGAAGGCGAAGGTTGTCG 62.012 63.158 0.00 0.00 43.98 4.35
1137 1149 3.391382 CGGAGCCTCCCCTTCGTT 61.391 66.667 4.85 0.00 31.13 3.85
1258 1272 2.162608 CGATAGGTCCATCCAGATCGTC 59.837 54.545 10.75 0.00 43.29 4.20
1338 1352 6.682746 ACTAGTTGTACTGTGATGTCTCTTG 58.317 40.000 0.00 0.00 0.00 3.02
1344 1363 6.631016 TGTACTGTGATGTCTCTTGTTATCC 58.369 40.000 0.00 0.00 0.00 2.59
1345 1364 5.745312 ACTGTGATGTCTCTTGTTATCCA 57.255 39.130 0.00 0.00 0.00 3.41
1406 1425 8.043710 CCTTTGTAAATAGTTCTGGTGAGATCT 58.956 37.037 0.00 0.00 33.58 2.75
1407 1426 8.777865 TTTGTAAATAGTTCTGGTGAGATCTG 57.222 34.615 0.00 0.00 31.77 2.90
1461 1486 9.881649 CATGTGGATAATGCATACTAGTAGAAT 57.118 33.333 8.85 0.00 0.00 2.40
1463 1488 9.929180 TGTGGATAATGCATACTAGTAGAATTC 57.071 33.333 8.85 0.00 0.00 2.17
1472 1497 8.526978 TGCATACTAGTAGAATTCTGGATGATC 58.473 37.037 18.47 3.03 0.00 2.92
1520 1545 0.526211 TGACTGATTGTCCGGACGAG 59.474 55.000 27.99 21.76 44.75 4.18
1552 1577 5.923665 GTCGATCCTTTTTAAACACGACAT 58.076 37.500 0.00 0.00 44.87 3.06
1584 1609 3.073650 AGAGATGGCCACTGAAAAGAACT 59.926 43.478 8.16 0.00 0.00 3.01
1588 1613 2.158682 TGGCCACTGAAAAGAACTGCTA 60.159 45.455 0.00 0.00 0.00 3.49
1610 1635 2.658268 GTTGTGGCTGGTTTGCGC 60.658 61.111 0.00 0.00 0.00 6.09
1616 1641 2.173382 GCTGGTTTGCGCTACGTG 59.827 61.111 9.73 4.57 0.00 4.49
1621 1646 1.411089 GTTTGCGCTACGTGACGAG 59.589 57.895 13.70 6.02 0.00 4.18
1668 1693 2.570415 TTGGTCGGCCACAATTTAGA 57.430 45.000 9.15 0.00 46.01 2.10
1671 1696 1.737793 GGTCGGCCACAATTTAGAGTG 59.262 52.381 0.00 0.00 35.56 3.51
1674 1699 3.998341 GTCGGCCACAATTTAGAGTGTAA 59.002 43.478 2.24 0.00 31.30 2.41
1708 1733 5.937540 ACGTCATATCAGTGTTTTCCATCAA 59.062 36.000 0.00 0.00 0.00 2.57
1743 1768 1.809133 TACCCTGGTTGTCTGGTTCA 58.191 50.000 0.00 0.00 33.14 3.18
1761 1786 6.738114 TGGTTCAGTGATCAAATGAAGTTTC 58.262 36.000 19.72 11.13 33.83 2.78
1767 1792 4.394920 GTGATCAAATGAAGTTTCCGCCTA 59.605 41.667 0.00 0.00 0.00 3.93
1768 1793 4.635765 TGATCAAATGAAGTTTCCGCCTAG 59.364 41.667 0.00 0.00 0.00 3.02
1772 2365 2.178912 TGAAGTTTCCGCCTAGGTTG 57.821 50.000 11.31 3.25 41.99 3.77
1775 2368 1.640917 AGTTTCCGCCTAGGTTGAGA 58.359 50.000 11.31 0.00 41.99 3.27
1788 2381 1.480954 GGTTGAGAGATTGGGTCGCTA 59.519 52.381 0.00 0.00 37.09 4.26
1801 2394 1.202498 GGTCGCTACCCTGTTATCCAC 60.202 57.143 0.00 0.00 40.21 4.02
1808 2401 3.543680 ACCCTGTTATCCACATCTTCG 57.456 47.619 0.00 0.00 33.76 3.79
1809 2402 2.213499 CCCTGTTATCCACATCTTCGC 58.787 52.381 0.00 0.00 33.76 4.70
1812 2405 0.582005 GTTATCCACATCTTCGCCGC 59.418 55.000 0.00 0.00 0.00 6.53
1813 2406 0.874175 TTATCCACATCTTCGCCGCG 60.874 55.000 6.39 6.39 0.00 6.46
1814 2407 1.730451 TATCCACATCTTCGCCGCGA 61.730 55.000 12.39 12.39 0.00 5.87
1815 2408 2.960957 ATCCACATCTTCGCCGCGAG 62.961 60.000 16.14 10.34 37.14 5.03
1816 2409 2.507102 CACATCTTCGCCGCGAGT 60.507 61.111 16.14 7.57 37.14 4.18
1817 2410 2.202623 ACATCTTCGCCGCGAGTC 60.203 61.111 16.14 0.00 37.14 3.36
1818 2411 2.956964 CATCTTCGCCGCGAGTCC 60.957 66.667 16.14 0.00 37.14 3.85
1827 2420 2.202492 CGCGAGTCCTCCTCAACG 60.202 66.667 0.00 0.00 40.48 4.10
1836 2429 1.850998 TCCTCCTCAACGGGATCTCTA 59.149 52.381 0.00 0.00 34.56 2.43
1902 2495 1.412710 CTATCCCCGCTGCTCTTTGTA 59.587 52.381 0.00 0.00 0.00 2.41
1919 2512 1.347707 TGTATTGGCCATCGATCCTCC 59.652 52.381 6.09 0.00 0.00 4.30
1921 2514 1.783250 ATTGGCCATCGATCCTCCCC 61.783 60.000 6.09 0.00 0.00 4.81
1922 2515 2.849162 GGCCATCGATCCTCCCCA 60.849 66.667 0.00 0.00 0.00 4.96
1923 2516 2.452064 GGCCATCGATCCTCCCCAA 61.452 63.158 0.00 0.00 0.00 4.12
1924 2517 1.227973 GCCATCGATCCTCCCCAAC 60.228 63.158 0.00 0.00 0.00 3.77
1925 2518 1.451936 CCATCGATCCTCCCCAACC 59.548 63.158 0.00 0.00 0.00 3.77
1926 2519 1.344953 CCATCGATCCTCCCCAACCA 61.345 60.000 0.00 0.00 0.00 3.67
1927 2520 0.546122 CATCGATCCTCCCCAACCAA 59.454 55.000 0.00 0.00 0.00 3.67
1928 2521 1.143684 CATCGATCCTCCCCAACCAAT 59.856 52.381 0.00 0.00 0.00 3.16
1929 2522 0.837272 TCGATCCTCCCCAACCAATC 59.163 55.000 0.00 0.00 0.00 2.67
1930 2523 0.179018 CGATCCTCCCCAACCAATCC 60.179 60.000 0.00 0.00 0.00 3.01
1931 2524 1.226311 GATCCTCCCCAACCAATCCT 58.774 55.000 0.00 0.00 0.00 3.24
1932 2525 1.570979 GATCCTCCCCAACCAATCCTT 59.429 52.381 0.00 0.00 0.00 3.36
1933 2526 2.369668 TCCTCCCCAACCAATCCTTA 57.630 50.000 0.00 0.00 0.00 2.69
1965 2558 3.381045 TGAGCAACGACTACTTCACAAG 58.619 45.455 0.00 0.00 0.00 3.16
2034 2627 1.123928 CCTCTATCTTCGTTGCCCCT 58.876 55.000 0.00 0.00 0.00 4.79
2068 2661 9.875708 AGGACATATAAAATTTGGCTACCATTA 57.124 29.630 0.00 0.00 31.53 1.90
2083 2676 5.450550 GCTACCATTATCAGTTTCCTTTGGC 60.451 44.000 0.00 0.00 0.00 4.52
2091 2684 0.591659 GTTTCCTTTGGCGAGGTGAC 59.408 55.000 6.62 3.91 38.04 3.67
2121 2714 0.972883 ACGAGCTTCCTCAAGAGCTT 59.027 50.000 0.00 0.00 38.00 3.74
2128 2721 3.119919 GCTTCCTCAAGAGCTTCATTGTG 60.120 47.826 0.00 0.00 0.00 3.33
2129 2722 2.430465 TCCTCAAGAGCTTCATTGTGC 58.570 47.619 0.00 0.00 0.00 4.57
2137 2730 1.822990 AGCTTCATTGTGCCCATCTTG 59.177 47.619 0.00 0.00 0.00 3.02
2150 2743 5.182760 GTGCCCATCTTGATGATATTCTTCC 59.817 44.000 11.76 0.00 33.36 3.46
2155 2748 4.887748 TCTTGATGATATTCTTCCGAGCC 58.112 43.478 0.00 0.00 0.00 4.70
2156 2749 4.590647 TCTTGATGATATTCTTCCGAGCCT 59.409 41.667 0.00 0.00 0.00 4.58
2157 2750 4.963318 TGATGATATTCTTCCGAGCCTT 57.037 40.909 0.00 0.00 0.00 4.35
2158 2751 4.635223 TGATGATATTCTTCCGAGCCTTG 58.365 43.478 0.00 0.00 0.00 3.61
2159 2752 4.101585 TGATGATATTCTTCCGAGCCTTGT 59.898 41.667 0.00 0.00 0.00 3.16
2160 2753 4.487714 TGATATTCTTCCGAGCCTTGTT 57.512 40.909 0.00 0.00 0.00 2.83
2161 2754 5.607939 TGATATTCTTCCGAGCCTTGTTA 57.392 39.130 0.00 0.00 0.00 2.41
2162 2755 5.601662 TGATATTCTTCCGAGCCTTGTTAG 58.398 41.667 0.00 0.00 0.00 2.34
2163 2756 2.762535 TTCTTCCGAGCCTTGTTAGG 57.237 50.000 0.00 0.00 45.02 2.69
2164 2757 1.640917 TCTTCCGAGCCTTGTTAGGT 58.359 50.000 0.00 0.00 44.00 3.08
2165 2758 1.975680 TCTTCCGAGCCTTGTTAGGTT 59.024 47.619 0.00 0.00 44.00 3.50
2166 2759 2.076863 CTTCCGAGCCTTGTTAGGTTG 58.923 52.381 0.00 0.00 44.00 3.77
2167 2760 1.344065 TCCGAGCCTTGTTAGGTTGA 58.656 50.000 0.00 0.00 44.00 3.18
2168 2761 1.906574 TCCGAGCCTTGTTAGGTTGAT 59.093 47.619 0.00 0.00 44.00 2.57
2169 2762 2.093658 TCCGAGCCTTGTTAGGTTGATC 60.094 50.000 0.00 0.00 44.00 2.92
2170 2763 2.093447 CCGAGCCTTGTTAGGTTGATCT 60.093 50.000 0.00 0.00 44.00 2.75
2171 2764 3.190874 CGAGCCTTGTTAGGTTGATCTC 58.809 50.000 0.00 0.00 44.00 2.75
2172 2765 3.536570 GAGCCTTGTTAGGTTGATCTCC 58.463 50.000 0.00 0.00 44.00 3.71
2173 2766 3.185455 AGCCTTGTTAGGTTGATCTCCT 58.815 45.455 13.00 13.00 44.00 3.69
2174 2767 3.198853 AGCCTTGTTAGGTTGATCTCCTC 59.801 47.826 12.06 2.53 44.00 3.71
2175 2768 3.198853 GCCTTGTTAGGTTGATCTCCTCT 59.801 47.826 12.06 0.00 44.00 3.69
2176 2769 4.764172 CCTTGTTAGGTTGATCTCCTCTG 58.236 47.826 12.06 2.60 36.74 3.35
2177 2770 3.895232 TGTTAGGTTGATCTCCTCTGC 57.105 47.619 12.06 6.28 36.60 4.26
2178 2771 3.173151 TGTTAGGTTGATCTCCTCTGCA 58.827 45.455 12.06 8.18 36.60 4.41
2179 2772 3.776969 TGTTAGGTTGATCTCCTCTGCAT 59.223 43.478 12.06 0.00 36.60 3.96
2180 2773 4.962362 TGTTAGGTTGATCTCCTCTGCATA 59.038 41.667 12.06 0.00 36.60 3.14
2181 2774 5.069648 TGTTAGGTTGATCTCCTCTGCATAG 59.930 44.000 12.06 0.00 36.60 2.23
2182 2775 2.971330 AGGTTGATCTCCTCTGCATAGG 59.029 50.000 11.88 11.88 38.06 2.57
2183 2776 2.549778 GGTTGATCTCCTCTGCATAGGC 60.550 54.545 13.22 0.00 36.51 3.93
2184 2777 1.346062 TGATCTCCTCTGCATAGGCC 58.654 55.000 13.22 0.00 40.13 5.19
2185 2778 0.612744 GATCTCCTCTGCATAGGCCC 59.387 60.000 13.22 0.00 40.13 5.80
2186 2779 0.104777 ATCTCCTCTGCATAGGCCCA 60.105 55.000 13.22 0.10 40.13 5.36
2187 2780 0.326522 TCTCCTCTGCATAGGCCCAA 60.327 55.000 13.22 0.00 40.13 4.12
2188 2781 0.179034 CTCCTCTGCATAGGCCCAAC 60.179 60.000 13.22 0.00 40.13 3.77
2189 2782 1.524621 CCTCTGCATAGGCCCAACG 60.525 63.158 5.03 0.00 40.13 4.10
2190 2783 1.524621 CTCTGCATAGGCCCAACGG 60.525 63.158 0.00 0.00 40.13 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.471244 GATGACGCCGTCCTCCTCG 62.471 68.421 15.60 0.00 0.00 4.63
10 11 3.518998 CGATGACGCCGTCCTCCT 61.519 66.667 15.60 0.00 0.00 3.69
11 12 3.823330 ACGATGACGCCGTCCTCC 61.823 66.667 15.60 2.76 43.96 4.30
16 17 4.175489 CGAGGACGATGACGCCGT 62.175 66.667 0.00 0.00 43.96 5.68
17 18 3.872728 TCGAGGACGATGACGCCG 61.873 66.667 0.00 0.00 43.81 6.46
31 32 2.745100 CCTCCTCGTCGGTGTCGA 60.745 66.667 0.00 0.00 43.86 4.20
32 33 3.812019 CCCTCCTCGTCGGTGTCG 61.812 72.222 0.00 0.00 37.82 4.35
33 34 4.131088 GCCCTCCTCGTCGGTGTC 62.131 72.222 0.00 0.00 0.00 3.67
72 73 4.101790 GTTGCCGATGCGTGGTGG 62.102 66.667 0.00 0.00 41.78 4.61
73 74 4.101790 GGTTGCCGATGCGTGGTG 62.102 66.667 0.00 0.00 41.78 4.17
76 77 3.803082 CAGGGTTGCCGATGCGTG 61.803 66.667 0.00 0.00 41.78 5.34
80 81 4.776322 TCGCCAGGGTTGCCGATG 62.776 66.667 0.00 0.00 0.00 3.84
81 82 4.473520 CTCGCCAGGGTTGCCGAT 62.474 66.667 0.00 0.00 0.00 4.18
91 92 3.376935 CTACTGCACCCCTCGCCAG 62.377 68.421 0.00 0.00 0.00 4.85
92 93 3.390521 CTACTGCACCCCTCGCCA 61.391 66.667 0.00 0.00 0.00 5.69
93 94 4.162690 CCTACTGCACCCCTCGCC 62.163 72.222 0.00 0.00 0.00 5.54
94 95 4.162690 CCCTACTGCACCCCTCGC 62.163 72.222 0.00 0.00 0.00 5.03
95 96 2.363795 TCCCTACTGCACCCCTCG 60.364 66.667 0.00 0.00 0.00 4.63
96 97 2.722201 CGTCCCTACTGCACCCCTC 61.722 68.421 0.00 0.00 0.00 4.30
97 98 2.683933 CGTCCCTACTGCACCCCT 60.684 66.667 0.00 0.00 0.00 4.79
98 99 3.782443 CCGTCCCTACTGCACCCC 61.782 72.222 0.00 0.00 0.00 4.95
99 100 3.001406 ACCGTCCCTACTGCACCC 61.001 66.667 0.00 0.00 0.00 4.61
100 101 2.264794 CACCGTCCCTACTGCACC 59.735 66.667 0.00 0.00 0.00 5.01
101 102 2.264794 CCACCGTCCCTACTGCAC 59.735 66.667 0.00 0.00 0.00 4.57
102 103 3.702048 GCCACCGTCCCTACTGCA 61.702 66.667 0.00 0.00 0.00 4.41
103 104 4.814294 CGCCACCGTCCCTACTGC 62.814 72.222 0.00 0.00 0.00 4.40
104 105 4.143333 CCGCCACCGTCCCTACTG 62.143 72.222 0.00 0.00 0.00 2.74
137 138 3.353114 TAAGTCGTCGCCGTCGTCG 62.353 63.158 3.41 0.00 45.67 5.12
138 139 1.860853 GTAAGTCGTCGCCGTCGTC 60.861 63.158 3.41 0.00 36.96 4.20
139 140 2.174349 GTAAGTCGTCGCCGTCGT 59.826 61.111 3.41 0.00 36.96 4.34
140 141 2.142239 GTGTAAGTCGTCGCCGTCG 61.142 63.158 0.00 0.00 35.01 5.12
141 142 1.799121 GGTGTAAGTCGTCGCCGTC 60.799 63.158 0.00 0.00 35.01 4.79
142 143 2.256461 GGTGTAAGTCGTCGCCGT 59.744 61.111 0.00 0.00 35.01 5.68
143 144 2.505557 GGGTGTAAGTCGTCGCCG 60.506 66.667 0.00 0.00 35.34 6.46
144 145 2.505557 CGGGTGTAAGTCGTCGCC 60.506 66.667 0.00 0.00 0.00 5.54
145 146 0.940991 AAACGGGTGTAAGTCGTCGC 60.941 55.000 0.00 0.00 36.01 5.19
146 147 1.055338 GAAACGGGTGTAAGTCGTCG 58.945 55.000 0.00 0.00 36.01 5.12
147 148 2.428888 AGAAACGGGTGTAAGTCGTC 57.571 50.000 0.00 0.00 36.01 4.20
148 149 2.622942 TGTAGAAACGGGTGTAAGTCGT 59.377 45.455 0.00 0.00 38.89 4.34
149 150 3.240069 CTGTAGAAACGGGTGTAAGTCG 58.760 50.000 0.00 0.00 0.00 4.18
150 151 3.582780 CCTGTAGAAACGGGTGTAAGTC 58.417 50.000 0.00 0.00 45.83 3.01
151 152 3.672767 CCTGTAGAAACGGGTGTAAGT 57.327 47.619 0.00 0.00 45.83 2.24
159 160 0.179134 CGAGGAGCCTGTAGAAACGG 60.179 60.000 0.00 0.00 0.00 4.44
160 161 0.179134 CCGAGGAGCCTGTAGAAACG 60.179 60.000 0.00 0.00 0.00 3.60
161 162 0.460459 GCCGAGGAGCCTGTAGAAAC 60.460 60.000 0.00 0.00 0.00 2.78
162 163 0.902984 TGCCGAGGAGCCTGTAGAAA 60.903 55.000 0.00 0.00 0.00 2.52
163 164 0.687757 ATGCCGAGGAGCCTGTAGAA 60.688 55.000 0.00 0.00 0.00 2.10
164 165 1.075970 ATGCCGAGGAGCCTGTAGA 60.076 57.895 0.00 0.00 0.00 2.59
165 166 1.068753 CATGCCGAGGAGCCTGTAG 59.931 63.158 0.00 0.00 0.00 2.74
166 167 0.396556 TACATGCCGAGGAGCCTGTA 60.397 55.000 0.00 0.00 41.17 2.74
167 168 1.680522 CTACATGCCGAGGAGCCTGT 61.681 60.000 0.00 0.39 43.00 4.00
168 169 1.068753 CTACATGCCGAGGAGCCTG 59.931 63.158 0.00 0.00 34.88 4.85
169 170 0.470833 ATCTACATGCCGAGGAGCCT 60.471 55.000 0.00 0.00 0.00 4.58
170 171 0.320247 CATCTACATGCCGAGGAGCC 60.320 60.000 0.00 0.00 0.00 4.70
171 172 0.320247 CCATCTACATGCCGAGGAGC 60.320 60.000 0.00 0.00 0.00 4.70
172 173 0.320247 GCCATCTACATGCCGAGGAG 60.320 60.000 0.00 0.00 0.00 3.69
173 174 1.748403 GCCATCTACATGCCGAGGA 59.252 57.895 0.00 0.00 0.00 3.71
174 175 1.665916 CGCCATCTACATGCCGAGG 60.666 63.158 0.00 0.00 32.53 4.63
175 176 1.665916 CCGCCATCTACATGCCGAG 60.666 63.158 0.00 0.00 32.53 4.63
176 177 2.421314 CCGCCATCTACATGCCGA 59.579 61.111 0.00 0.00 32.53 5.54
177 178 2.666190 CCCGCCATCTACATGCCG 60.666 66.667 0.00 0.00 30.58 5.69
178 179 1.893808 CACCCGCCATCTACATGCC 60.894 63.158 0.00 0.00 0.00 4.40
179 180 1.893808 CCACCCGCCATCTACATGC 60.894 63.158 0.00 0.00 0.00 4.06
180 181 1.893808 GCCACCCGCCATCTACATG 60.894 63.158 0.00 0.00 0.00 3.21
181 182 2.510906 GCCACCCGCCATCTACAT 59.489 61.111 0.00 0.00 0.00 2.29
182 183 4.155733 CGCCACCCGCCATCTACA 62.156 66.667 0.00 0.00 0.00 2.74
183 184 4.910585 CCGCCACCCGCCATCTAC 62.911 72.222 0.00 0.00 35.03 2.59
204 205 2.731691 ATTACGCCCCAGCTATGCCG 62.732 60.000 0.00 0.00 36.60 5.69
205 206 0.955919 GATTACGCCCCAGCTATGCC 60.956 60.000 0.00 0.00 36.60 4.40
206 207 0.035458 AGATTACGCCCCAGCTATGC 59.965 55.000 0.00 0.00 36.60 3.14
207 208 2.093973 CCTAGATTACGCCCCAGCTATG 60.094 54.545 0.00 0.00 36.60 2.23
208 209 2.180276 CCTAGATTACGCCCCAGCTAT 58.820 52.381 0.00 0.00 36.60 2.97
209 210 1.629043 CCTAGATTACGCCCCAGCTA 58.371 55.000 0.00 0.00 36.60 3.32
210 211 1.759459 GCCTAGATTACGCCCCAGCT 61.759 60.000 0.00 0.00 36.60 4.24
211 212 1.301795 GCCTAGATTACGCCCCAGC 60.302 63.158 0.00 0.00 0.00 4.85
212 213 1.006102 CGCCTAGATTACGCCCCAG 60.006 63.158 0.00 0.00 0.00 4.45
213 214 0.467844 TACGCCTAGATTACGCCCCA 60.468 55.000 0.00 0.00 0.00 4.96
214 215 0.243095 CTACGCCTAGATTACGCCCC 59.757 60.000 0.00 0.00 0.00 5.80
215 216 0.957362 ACTACGCCTAGATTACGCCC 59.043 55.000 0.00 0.00 0.00 6.13
216 217 2.789491 AACTACGCCTAGATTACGCC 57.211 50.000 0.00 0.00 0.00 5.68
217 218 2.218075 GCAAACTACGCCTAGATTACGC 59.782 50.000 0.00 0.00 0.00 4.42
218 219 3.441163 TGCAAACTACGCCTAGATTACG 58.559 45.455 0.00 0.00 0.00 3.18
219 220 4.809426 ACATGCAAACTACGCCTAGATTAC 59.191 41.667 0.00 0.00 0.00 1.89
220 221 5.018539 ACATGCAAACTACGCCTAGATTA 57.981 39.130 0.00 0.00 0.00 1.75
221 222 3.873910 ACATGCAAACTACGCCTAGATT 58.126 40.909 0.00 0.00 0.00 2.40
222 223 3.543680 ACATGCAAACTACGCCTAGAT 57.456 42.857 0.00 0.00 0.00 1.98
223 224 3.328382 AACATGCAAACTACGCCTAGA 57.672 42.857 0.00 0.00 0.00 2.43
224 225 5.523916 AGATAAACATGCAAACTACGCCTAG 59.476 40.000 0.00 0.00 0.00 3.02
225 226 5.424757 AGATAAACATGCAAACTACGCCTA 58.575 37.500 0.00 0.00 0.00 3.93
226 227 4.261801 AGATAAACATGCAAACTACGCCT 58.738 39.130 0.00 0.00 0.00 5.52
227 228 4.616181 AGATAAACATGCAAACTACGCC 57.384 40.909 0.00 0.00 0.00 5.68
228 229 6.927933 AAAAGATAAACATGCAAACTACGC 57.072 33.333 0.00 0.00 0.00 4.42
250 251 7.753659 TCGGCGATTCATAGAATTTGTAAAAA 58.246 30.769 4.99 0.00 0.00 1.94
251 252 7.065324 ACTCGGCGATTCATAGAATTTGTAAAA 59.935 33.333 11.27 0.00 0.00 1.52
252 253 6.537301 ACTCGGCGATTCATAGAATTTGTAAA 59.463 34.615 11.27 0.00 0.00 2.01
253 254 6.046593 ACTCGGCGATTCATAGAATTTGTAA 58.953 36.000 11.27 0.00 0.00 2.41
254 255 5.597806 ACTCGGCGATTCATAGAATTTGTA 58.402 37.500 11.27 0.00 0.00 2.41
255 256 4.442706 ACTCGGCGATTCATAGAATTTGT 58.557 39.130 11.27 0.00 0.00 2.83
256 257 5.409643 AACTCGGCGATTCATAGAATTTG 57.590 39.130 11.27 0.00 0.00 2.32
257 258 5.354234 ACAAACTCGGCGATTCATAGAATTT 59.646 36.000 11.27 0.00 0.00 1.82
258 259 4.876107 ACAAACTCGGCGATTCATAGAATT 59.124 37.500 11.27 0.00 0.00 2.17
259 260 4.271049 CACAAACTCGGCGATTCATAGAAT 59.729 41.667 11.27 0.00 0.00 2.40
260 261 3.616821 CACAAACTCGGCGATTCATAGAA 59.383 43.478 11.27 0.00 0.00 2.10
261 262 3.186909 CACAAACTCGGCGATTCATAGA 58.813 45.455 11.27 0.00 0.00 1.98
262 263 2.285834 GCACAAACTCGGCGATTCATAG 60.286 50.000 11.27 0.00 0.00 2.23
263 264 1.663643 GCACAAACTCGGCGATTCATA 59.336 47.619 11.27 0.00 0.00 2.15
264 265 0.447801 GCACAAACTCGGCGATTCAT 59.552 50.000 11.27 0.00 0.00 2.57
265 266 0.882484 TGCACAAACTCGGCGATTCA 60.882 50.000 11.27 0.00 0.00 2.57
266 267 0.237235 TTGCACAAACTCGGCGATTC 59.763 50.000 11.27 0.00 0.00 2.52
267 268 0.238289 CTTGCACAAACTCGGCGATT 59.762 50.000 11.27 0.37 0.00 3.34
268 269 0.602638 TCTTGCACAAACTCGGCGAT 60.603 50.000 11.27 0.00 0.00 4.58
269 270 0.602638 ATCTTGCACAAACTCGGCGA 60.603 50.000 10.14 10.14 0.00 5.54
270 271 0.179215 GATCTTGCACAAACTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
271 272 0.179215 CGATCTTGCACAAACTCGGC 60.179 55.000 0.00 0.00 0.00 5.54
272 273 1.126846 GACGATCTTGCACAAACTCGG 59.873 52.381 14.77 2.78 32.16 4.63
273 274 1.201704 CGACGATCTTGCACAAACTCG 60.202 52.381 10.82 10.82 33.33 4.18
274 275 2.058798 TCGACGATCTTGCACAAACTC 58.941 47.619 0.00 0.00 0.00 3.01
275 276 2.061773 CTCGACGATCTTGCACAAACT 58.938 47.619 0.00 0.00 0.00 2.66
276 277 1.792949 ACTCGACGATCTTGCACAAAC 59.207 47.619 0.00 0.00 0.00 2.93
277 278 2.058798 GACTCGACGATCTTGCACAAA 58.941 47.619 0.00 0.00 0.00 2.83
278 279 1.269723 AGACTCGACGATCTTGCACAA 59.730 47.619 0.00 0.00 0.00 3.33
279 280 0.881796 AGACTCGACGATCTTGCACA 59.118 50.000 0.00 0.00 0.00 4.57
280 281 1.263776 CAGACTCGACGATCTTGCAC 58.736 55.000 0.00 0.00 0.00 4.57
281 282 0.881796 ACAGACTCGACGATCTTGCA 59.118 50.000 0.00 0.00 0.00 4.08
282 283 1.983972 AACAGACTCGACGATCTTGC 58.016 50.000 0.00 0.00 0.00 4.01
283 284 6.633668 ATTTAAACAGACTCGACGATCTTG 57.366 37.500 0.00 0.00 0.00 3.02
284 285 7.599245 AGAAATTTAAACAGACTCGACGATCTT 59.401 33.333 0.00 0.00 0.00 2.40
285 286 7.091443 AGAAATTTAAACAGACTCGACGATCT 58.909 34.615 0.00 0.96 0.00 2.75
286 287 7.279470 AGAAATTTAAACAGACTCGACGATC 57.721 36.000 0.00 0.00 0.00 3.69
287 288 8.808529 CATAGAAATTTAAACAGACTCGACGAT 58.191 33.333 0.00 0.00 0.00 3.73
288 289 8.024865 TCATAGAAATTTAAACAGACTCGACGA 58.975 33.333 0.00 0.00 0.00 4.20
289 290 8.169839 TCATAGAAATTTAAACAGACTCGACG 57.830 34.615 0.00 0.00 0.00 5.12
298 299 9.658475 CGGCGATATTTCATAGAAATTTAAACA 57.342 29.630 0.00 0.00 0.00 2.83
299 300 9.872757 TCGGCGATATTTCATAGAAATTTAAAC 57.127 29.630 4.99 0.18 0.00 2.01
301 302 9.268268 ACTCGGCGATATTTCATAGAAATTTAA 57.732 29.630 11.27 0.00 0.00 1.52
302 303 8.827177 ACTCGGCGATATTTCATAGAAATTTA 57.173 30.769 11.27 0.00 0.00 1.40
303 304 7.730364 ACTCGGCGATATTTCATAGAAATTT 57.270 32.000 11.27 3.18 0.00 1.82
304 305 7.359264 CGAACTCGGCGATATTTCATAGAAATT 60.359 37.037 11.27 0.09 35.37 1.82
305 306 6.089551 CGAACTCGGCGATATTTCATAGAAAT 59.910 38.462 11.27 9.61 35.37 2.17
306 307 5.401376 CGAACTCGGCGATATTTCATAGAAA 59.599 40.000 11.27 0.00 35.37 2.52
307 308 4.915667 CGAACTCGGCGATATTTCATAGAA 59.084 41.667 11.27 0.00 35.37 2.10
308 309 4.473199 CGAACTCGGCGATATTTCATAGA 58.527 43.478 11.27 0.00 35.37 1.98
309 310 3.059570 GCGAACTCGGCGATATTTCATAG 59.940 47.826 11.27 0.00 40.23 2.23
310 311 2.984471 GCGAACTCGGCGATATTTCATA 59.016 45.455 11.27 0.00 40.23 2.15
311 312 1.792949 GCGAACTCGGCGATATTTCAT 59.207 47.619 11.27 0.00 40.23 2.57
312 313 1.205657 GCGAACTCGGCGATATTTCA 58.794 50.000 11.27 0.00 40.23 2.69
313 314 1.071436 GTGCGAACTCGGCGATATTTC 60.071 52.381 11.27 12.54 40.23 2.17
314 315 0.928229 GTGCGAACTCGGCGATATTT 59.072 50.000 11.27 3.91 40.23 1.40
315 316 1.206745 CGTGCGAACTCGGCGATATT 61.207 55.000 11.27 8.31 40.23 1.28
316 317 1.657487 CGTGCGAACTCGGCGATAT 60.657 57.895 11.27 1.26 40.23 1.63
317 318 2.055310 ATCGTGCGAACTCGGCGATA 62.055 55.000 11.27 0.00 39.97 2.92
318 319 2.884087 AATCGTGCGAACTCGGCGAT 62.884 55.000 11.27 0.00 42.96 4.58
319 320 3.620300 AATCGTGCGAACTCGGCGA 62.620 57.895 10.14 10.14 40.23 5.54
320 321 2.222953 AAAATCGTGCGAACTCGGCG 62.223 55.000 0.00 0.00 40.23 6.46
321 322 0.789383 CAAAATCGTGCGAACTCGGC 60.789 55.000 0.00 0.00 40.23 5.54
322 323 0.179225 CCAAAATCGTGCGAACTCGG 60.179 55.000 0.00 0.00 40.23 4.63
323 324 0.789383 GCCAAAATCGTGCGAACTCG 60.789 55.000 0.00 0.00 43.27 4.18
324 325 0.237235 TGCCAAAATCGTGCGAACTC 59.763 50.000 0.00 0.00 0.00 3.01
325 326 0.238289 CTGCCAAAATCGTGCGAACT 59.762 50.000 0.00 0.00 0.00 3.01
326 327 1.337110 GCTGCCAAAATCGTGCGAAC 61.337 55.000 0.00 0.00 0.00 3.95
327 328 1.081509 GCTGCCAAAATCGTGCGAA 60.082 52.632 0.00 0.00 0.00 4.70
328 329 2.560861 GCTGCCAAAATCGTGCGA 59.439 55.556 0.00 0.00 0.00 5.10
329 330 2.871080 CGCTGCCAAAATCGTGCG 60.871 61.111 0.00 0.00 37.57 5.34
330 331 1.797537 GTCGCTGCCAAAATCGTGC 60.798 57.895 0.00 0.00 0.00 5.34
331 332 1.154225 GGTCGCTGCCAAAATCGTG 60.154 57.895 0.00 0.00 0.00 4.35
332 333 1.302511 AGGTCGCTGCCAAAATCGT 60.303 52.632 0.00 0.00 0.00 3.73
333 334 1.135315 CAGGTCGCTGCCAAAATCG 59.865 57.895 0.00 0.00 0.00 3.34
334 335 0.449388 CTCAGGTCGCTGCCAAAATC 59.551 55.000 0.00 0.00 0.00 2.17
335 336 0.962356 CCTCAGGTCGCTGCCAAAAT 60.962 55.000 0.00 0.00 0.00 1.82
336 337 1.600636 CCTCAGGTCGCTGCCAAAA 60.601 57.895 0.00 0.00 0.00 2.44
337 338 2.032528 CCTCAGGTCGCTGCCAAA 59.967 61.111 0.00 0.00 0.00 3.28
338 339 4.020617 CCCTCAGGTCGCTGCCAA 62.021 66.667 0.00 0.00 0.00 4.52
342 343 4.803426 GACGCCCTCAGGTCGCTG 62.803 72.222 0.00 0.00 36.51 5.18
346 347 3.063084 AGTCGACGCCCTCAGGTC 61.063 66.667 10.46 0.00 34.57 3.85
347 348 3.374402 CAGTCGACGCCCTCAGGT 61.374 66.667 10.46 0.00 34.57 4.00
348 349 4.135153 CCAGTCGACGCCCTCAGG 62.135 72.222 10.46 1.29 0.00 3.86
349 350 2.154798 TTTCCAGTCGACGCCCTCAG 62.155 60.000 10.46 0.00 0.00 3.35
350 351 2.204461 TTTCCAGTCGACGCCCTCA 61.204 57.895 10.46 0.00 0.00 3.86
351 352 1.737008 GTTTCCAGTCGACGCCCTC 60.737 63.158 10.46 0.00 0.00 4.30
352 353 2.342648 GTTTCCAGTCGACGCCCT 59.657 61.111 10.46 0.00 0.00 5.19
353 354 2.741211 GGTTTCCAGTCGACGCCC 60.741 66.667 10.46 1.40 0.00 6.13
354 355 0.953960 ATTGGTTTCCAGTCGACGCC 60.954 55.000 10.46 7.52 33.81 5.68
355 356 0.442699 GATTGGTTTCCAGTCGACGC 59.557 55.000 10.46 0.00 33.81 5.19
360 361 1.087501 GAGGCGATTGGTTTCCAGTC 58.912 55.000 1.95 1.95 36.98 3.51
361 362 0.322546 GGAGGCGATTGGTTTCCAGT 60.323 55.000 0.00 0.00 33.81 4.00
362 363 0.322456 TGGAGGCGATTGGTTTCCAG 60.322 55.000 0.00 0.00 33.81 3.86
363 364 0.322456 CTGGAGGCGATTGGTTTCCA 60.322 55.000 0.00 0.00 36.55 3.53
364 365 1.032114 CCTGGAGGCGATTGGTTTCC 61.032 60.000 0.00 0.00 0.00 3.13
365 366 2.482326 CCTGGAGGCGATTGGTTTC 58.518 57.895 0.00 0.00 0.00 2.78
366 367 4.743018 CCTGGAGGCGATTGGTTT 57.257 55.556 0.00 0.00 0.00 3.27
377 378 2.985282 TTTGCTTGGCGCCTGGAG 60.985 61.111 29.70 22.32 38.05 3.86
378 379 3.294493 GTTTGCTTGGCGCCTGGA 61.294 61.111 29.70 18.78 38.05 3.86
379 380 4.705519 CGTTTGCTTGGCGCCTGG 62.706 66.667 29.70 20.50 38.05 4.45
385 386 1.801512 GAATCGGCGTTTGCTTGGC 60.802 57.895 8.09 0.00 42.25 4.52
386 387 0.454957 CTGAATCGGCGTTTGCTTGG 60.455 55.000 8.09 0.00 42.25 3.61
387 388 0.238289 ACTGAATCGGCGTTTGCTTG 59.762 50.000 8.09 0.00 42.25 4.01
388 389 0.517316 GACTGAATCGGCGTTTGCTT 59.483 50.000 8.09 0.00 42.25 3.91
389 390 1.298859 GGACTGAATCGGCGTTTGCT 61.299 55.000 8.09 0.00 42.25 3.91
390 391 1.134694 GGACTGAATCGGCGTTTGC 59.865 57.895 8.09 0.00 41.71 3.68
391 392 0.953471 TGGGACTGAATCGGCGTTTG 60.953 55.000 8.09 0.00 0.00 2.93
392 393 0.673644 CTGGGACTGAATCGGCGTTT 60.674 55.000 6.85 4.44 0.00 3.60
393 394 1.079127 CTGGGACTGAATCGGCGTT 60.079 57.895 6.85 0.00 0.00 4.84
394 395 2.579201 CTGGGACTGAATCGGCGT 59.421 61.111 6.85 0.00 0.00 5.68
395 396 2.202932 CCTGGGACTGAATCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
396 397 2.514824 GCCTGGGACTGAATCGGC 60.515 66.667 0.00 0.00 0.00 5.54
397 398 2.202932 CGCCTGGGACTGAATCGG 60.203 66.667 0.00 0.00 0.00 4.18
398 399 2.202932 CCGCCTGGGACTGAATCG 60.203 66.667 0.00 0.00 38.47 3.34
399 400 2.514824 GCCGCCTGGGACTGAATC 60.515 66.667 0.00 0.00 38.47 2.52
400 401 2.142292 AAAGCCGCCTGGGACTGAAT 62.142 55.000 0.00 0.00 38.47 2.57
401 402 2.351924 AAAAGCCGCCTGGGACTGAA 62.352 55.000 0.00 0.00 38.47 3.02
402 403 2.351924 AAAAAGCCGCCTGGGACTGA 62.352 55.000 0.00 0.00 38.47 3.41
403 404 1.903404 AAAAAGCCGCCTGGGACTG 60.903 57.895 0.00 0.00 38.47 3.51
404 405 2.520968 AAAAAGCCGCCTGGGACT 59.479 55.556 0.00 0.00 38.47 3.85
419 420 0.956902 GGCCCTAAGACGCCGAAAAA 60.957 55.000 0.00 0.00 34.94 1.94
420 421 1.376295 GGCCCTAAGACGCCGAAAA 60.376 57.895 0.00 0.00 34.94 2.29
421 422 2.266689 GGCCCTAAGACGCCGAAA 59.733 61.111 0.00 0.00 34.94 3.46
425 426 2.510918 GTTCGGCCCTAAGACGCC 60.511 66.667 0.00 0.00 42.05 5.68
426 427 2.884207 CGTTCGGCCCTAAGACGC 60.884 66.667 0.00 0.00 0.00 5.19
427 428 2.202703 CCGTTCGGCCCTAAGACG 60.203 66.667 0.00 0.28 0.00 4.18
428 429 2.510918 GCCGTTCGGCCCTAAGAC 60.511 66.667 23.38 0.00 44.99 3.01
437 438 0.179111 TAGCATCTTCAGCCGTTCGG 60.179 55.000 6.90 6.90 0.00 4.30
438 439 0.924090 GTAGCATCTTCAGCCGTTCG 59.076 55.000 0.00 0.00 0.00 3.95
439 440 1.929836 CAGTAGCATCTTCAGCCGTTC 59.070 52.381 0.00 0.00 0.00 3.95
440 441 1.276421 ACAGTAGCATCTTCAGCCGTT 59.724 47.619 0.00 0.00 0.00 4.44
441 442 0.898320 ACAGTAGCATCTTCAGCCGT 59.102 50.000 0.00 0.00 0.00 5.68
442 443 2.871182 TACAGTAGCATCTTCAGCCG 57.129 50.000 0.00 0.00 0.00 5.52
443 444 2.805099 GCATACAGTAGCATCTTCAGCC 59.195 50.000 0.00 0.00 0.00 4.85
444 445 2.474359 CGCATACAGTAGCATCTTCAGC 59.526 50.000 0.00 0.00 0.00 4.26
445 446 2.474359 GCGCATACAGTAGCATCTTCAG 59.526 50.000 0.30 0.00 0.00 3.02
446 447 2.473816 GCGCATACAGTAGCATCTTCA 58.526 47.619 0.30 0.00 0.00 3.02
447 448 1.453524 CGCGCATACAGTAGCATCTTC 59.546 52.381 8.75 0.00 0.00 2.87
448 449 1.202417 ACGCGCATACAGTAGCATCTT 60.202 47.619 5.73 0.00 0.00 2.40
449 450 0.385751 ACGCGCATACAGTAGCATCT 59.614 50.000 5.73 0.00 0.00 2.90
450 451 0.504384 CACGCGCATACAGTAGCATC 59.496 55.000 5.73 0.00 0.00 3.91
451 452 1.490693 GCACGCGCATACAGTAGCAT 61.491 55.000 5.73 0.00 38.36 3.79
452 453 2.164663 GCACGCGCATACAGTAGCA 61.165 57.895 5.73 0.00 38.36 3.49
453 454 2.621000 GCACGCGCATACAGTAGC 59.379 61.111 5.73 0.00 38.36 3.58
454 455 0.875908 ATGGCACGCGCATACAGTAG 60.876 55.000 5.73 0.00 41.24 2.57
455 456 1.142965 ATGGCACGCGCATACAGTA 59.857 52.632 5.73 0.00 41.24 2.74
456 457 2.125147 ATGGCACGCGCATACAGT 60.125 55.556 5.73 0.00 41.24 3.55
457 458 2.325511 CATGGCACGCGCATACAG 59.674 61.111 5.73 0.00 41.24 2.74
458 459 2.435762 ACATGGCACGCGCATACA 60.436 55.556 5.73 0.00 41.24 2.29
459 460 2.023181 CACATGGCACGCGCATAC 59.977 61.111 5.73 0.00 41.24 2.39
460 461 3.201297 CCACATGGCACGCGCATA 61.201 61.111 5.73 0.00 41.24 3.14
551 552 2.544686 CACTCCTAGGTGATACGACGAG 59.455 54.545 17.66 1.64 39.34 4.18
561 562 1.609555 GGTATCGCTCACTCCTAGGTG 59.390 57.143 9.08 9.22 38.44 4.00
567 569 0.248949 GAACCGGTATCGCTCACTCC 60.249 60.000 8.00 0.00 34.56 3.85
659 661 4.521062 ATCAGCTGCGGCGGAGTC 62.521 66.667 28.68 20.30 44.87 3.36
720 722 2.742372 CGGCAGAAGGGACGGTTG 60.742 66.667 0.00 0.00 35.07 3.77
727 729 0.250081 GCTAGAATCCGGCAGAAGGG 60.250 60.000 0.00 0.00 0.00 3.95
859 866 0.108945 GACTTGTTACCGTCCGGGAG 60.109 60.000 10.91 0.00 39.97 4.30
860 867 0.827089 TGACTTGTTACCGTCCGGGA 60.827 55.000 10.91 0.00 39.97 5.14
861 868 0.033781 TTGACTTGTTACCGTCCGGG 59.966 55.000 10.91 0.00 43.62 5.73
862 869 1.142474 GTTGACTTGTTACCGTCCGG 58.858 55.000 3.76 3.76 42.03 5.14
885 892 1.766494 TTGGATGTGGATGTGGATGC 58.234 50.000 0.00 0.00 0.00 3.91
909 916 2.993899 CTCGGGATTTGTGTGTGTACTC 59.006 50.000 0.00 0.00 0.00 2.59
910 917 2.870435 GCTCGGGATTTGTGTGTGTACT 60.870 50.000 0.00 0.00 0.00 2.73
911 918 1.463444 GCTCGGGATTTGTGTGTGTAC 59.537 52.381 0.00 0.00 0.00 2.90
912 919 1.803334 GCTCGGGATTTGTGTGTGTA 58.197 50.000 0.00 0.00 0.00 2.90
913 920 1.227999 CGCTCGGGATTTGTGTGTGT 61.228 55.000 0.00 0.00 0.00 3.72
914 921 0.948623 TCGCTCGGGATTTGTGTGTG 60.949 55.000 0.00 0.00 0.00 3.82
932 939 3.188667 AGAAAAGGAATCGGTTTTCGCTC 59.811 43.478 11.38 0.00 44.12 5.03
993 1000 2.100631 CACCAGGAACATCGCCGAC 61.101 63.158 0.00 0.00 0.00 4.79
1221 1235 2.076622 ATCGGATCGGACGAGGCTTG 62.077 60.000 4.94 0.00 44.24 4.01
1251 1265 3.409026 AAGAGGCAAAACAGACGATCT 57.591 42.857 0.00 0.00 0.00 2.75
1258 1272 2.357637 TGAACCGAAAGAGGCAAAACAG 59.642 45.455 0.00 0.00 33.69 3.16
1318 1332 7.063544 GGATAACAAGAGACATCACAGTACAAC 59.936 40.741 0.00 0.00 0.00 3.32
1326 1340 4.331168 GCTGTGGATAACAAGAGACATCAC 59.669 45.833 0.00 0.00 38.67 3.06
1344 1363 0.798776 GTCTCATTTCCACCGCTGTG 59.201 55.000 0.56 0.56 42.39 3.66
1345 1364 0.321653 GGTCTCATTTCCACCGCTGT 60.322 55.000 0.00 0.00 0.00 4.40
1406 1425 0.178964 CTCAAACTGAAAGGCCCCCA 60.179 55.000 0.00 0.00 39.30 4.96
1407 1426 1.536073 GCTCAAACTGAAAGGCCCCC 61.536 60.000 0.00 0.00 39.30 5.40
1461 1486 4.019051 TCCAGCAAAAGAGATCATCCAGAA 60.019 41.667 0.00 0.00 0.00 3.02
1463 1488 3.882444 TCCAGCAAAAGAGATCATCCAG 58.118 45.455 0.00 0.00 0.00 3.86
1472 1497 2.517959 TGTTCCCATCCAGCAAAAGAG 58.482 47.619 0.00 0.00 0.00 2.85
1513 1538 0.713883 CGACAAAATCCACTCGTCCG 59.286 55.000 0.00 0.00 0.00 4.79
1520 1545 7.650104 TGTTTAAAAAGGATCGACAAAATCCAC 59.350 33.333 4.88 0.00 44.39 4.02
1584 1609 0.035317 CCAGCCACAACAGTCTAGCA 59.965 55.000 0.00 0.00 0.00 3.49
1588 1613 1.392589 CAAACCAGCCACAACAGTCT 58.607 50.000 0.00 0.00 0.00 3.24
1610 1635 2.543861 CCAATCATCCCTCGTCACGTAG 60.544 54.545 0.00 0.00 0.00 3.51
1616 1641 0.755686 AGAGCCAATCATCCCTCGTC 59.244 55.000 0.00 0.00 0.00 4.20
1621 1646 1.753073 CCAAACAGAGCCAATCATCCC 59.247 52.381 0.00 0.00 0.00 3.85
1668 1693 8.194769 TGATATGACGTGTATCATGTTTACACT 58.805 33.333 25.20 17.72 44.62 3.55
1671 1696 8.480066 CACTGATATGACGTGTATCATGTTTAC 58.520 37.037 16.36 0.00 39.68 2.01
1674 1699 6.573434 ACACTGATATGACGTGTATCATGTT 58.427 36.000 16.36 5.99 39.86 2.71
1727 1752 1.140852 TCACTGAACCAGACAACCAGG 59.859 52.381 0.45 0.00 35.18 4.45
1743 1768 3.191371 GGCGGAAACTTCATTTGATCACT 59.809 43.478 0.00 0.00 0.00 3.41
1761 1786 1.202580 CCAATCTCTCAACCTAGGCGG 60.203 57.143 9.30 0.52 39.35 6.13
1767 1792 0.250513 GCGACCCAATCTCTCAACCT 59.749 55.000 0.00 0.00 0.00 3.50
1768 1793 0.250513 AGCGACCCAATCTCTCAACC 59.749 55.000 0.00 0.00 0.00 3.77
1772 2365 3.969995 GGTAGCGACCCAATCTCTC 57.030 57.895 4.34 0.00 40.23 3.20
1788 2381 2.420129 GCGAAGATGTGGATAACAGGGT 60.420 50.000 0.00 0.00 43.64 4.34
1801 2394 2.956964 GGACTCGCGGCGAAGATG 60.957 66.667 26.28 16.46 34.74 2.90
1813 2406 0.747852 GATCCCGTTGAGGAGGACTC 59.252 60.000 0.00 0.00 46.78 3.36
1814 2407 0.336737 AGATCCCGTTGAGGAGGACT 59.663 55.000 0.00 0.00 45.00 3.85
1815 2408 0.747852 GAGATCCCGTTGAGGAGGAC 59.252 60.000 0.00 0.00 45.00 3.85
1816 2409 0.631753 AGAGATCCCGTTGAGGAGGA 59.368 55.000 0.00 0.00 45.00 3.71
1817 2410 2.235016 CTAGAGATCCCGTTGAGGAGG 58.765 57.143 0.00 0.00 45.00 4.30
1818 2411 1.611491 GCTAGAGATCCCGTTGAGGAG 59.389 57.143 0.00 0.00 45.00 3.69
1836 2429 1.542108 GCTATGAAGAATGGGAGCGCT 60.542 52.381 11.27 11.27 0.00 5.92
1871 2464 1.749033 GGGGATAGAAGACCCGCAG 59.251 63.158 0.00 0.00 46.42 5.18
1902 2495 1.763770 GGGAGGATCGATGGCCAAT 59.236 57.895 10.96 0.00 34.37 3.16
1919 2512 1.816224 CCACGTTAAGGATTGGTTGGG 59.184 52.381 1.43 0.00 0.00 4.12
1921 2514 1.201414 GGCCACGTTAAGGATTGGTTG 59.799 52.381 0.00 0.00 0.00 3.77
1922 2515 1.202952 TGGCCACGTTAAGGATTGGTT 60.203 47.619 0.00 0.00 0.00 3.67
1923 2516 0.402504 TGGCCACGTTAAGGATTGGT 59.597 50.000 0.00 0.00 0.00 3.67
1924 2517 1.762708 ATGGCCACGTTAAGGATTGG 58.237 50.000 8.16 1.45 0.00 3.16
1925 2518 2.752354 TCAATGGCCACGTTAAGGATTG 59.248 45.455 8.16 5.46 0.00 2.67
1926 2519 3.016736 CTCAATGGCCACGTTAAGGATT 58.983 45.455 8.16 0.00 0.00 3.01
1927 2520 2.643551 CTCAATGGCCACGTTAAGGAT 58.356 47.619 8.16 0.00 0.00 3.24
1928 2521 1.948611 GCTCAATGGCCACGTTAAGGA 60.949 52.381 8.16 0.00 0.00 3.36
1929 2522 0.451783 GCTCAATGGCCACGTTAAGG 59.548 55.000 8.16 0.00 0.00 2.69
1930 2523 1.164411 TGCTCAATGGCCACGTTAAG 58.836 50.000 8.16 2.49 0.00 1.85
1931 2524 1.268352 GTTGCTCAATGGCCACGTTAA 59.732 47.619 8.16 0.00 0.00 2.01
1932 2525 0.878416 GTTGCTCAATGGCCACGTTA 59.122 50.000 8.16 0.00 0.00 3.18
1933 2526 1.659794 GTTGCTCAATGGCCACGTT 59.340 52.632 8.16 0.00 0.00 3.99
1965 2558 1.306633 GGAACCCCTCCCACCAATC 59.693 63.158 0.00 0.00 38.44 2.67
2017 2610 5.510861 GCTTAATAGGGGCAACGAAGATAGA 60.511 44.000 0.00 0.00 37.60 1.98
2068 2661 1.073923 ACCTCGCCAAAGGAAACTGAT 59.926 47.619 1.66 0.00 42.68 2.90
2070 2663 0.593128 CACCTCGCCAAAGGAAACTG 59.407 55.000 1.66 0.00 42.68 3.16
2121 2714 3.369242 TCATCAAGATGGGCACAATGA 57.631 42.857 9.96 0.00 39.24 2.57
2128 2721 4.394300 CGGAAGAATATCATCAAGATGGGC 59.606 45.833 9.96 0.00 39.24 5.36
2129 2722 5.798132 TCGGAAGAATATCATCAAGATGGG 58.202 41.667 9.96 0.00 36.93 4.00
2137 2730 4.636249 ACAAGGCTCGGAAGAATATCATC 58.364 43.478 0.00 0.00 41.32 2.92
2150 2743 3.190874 GAGATCAACCTAACAAGGCTCG 58.809 50.000 0.00 0.00 0.00 5.03
2155 2748 4.187694 GCAGAGGAGATCAACCTAACAAG 58.812 47.826 10.71 2.83 37.93 3.16
2156 2749 3.582647 TGCAGAGGAGATCAACCTAACAA 59.417 43.478 10.71 0.00 37.93 2.83
2157 2750 3.173151 TGCAGAGGAGATCAACCTAACA 58.827 45.455 10.71 7.41 37.93 2.41
2158 2751 3.895232 TGCAGAGGAGATCAACCTAAC 57.105 47.619 10.71 5.38 37.93 2.34
2159 2752 4.590647 CCTATGCAGAGGAGATCAACCTAA 59.409 45.833 23.35 0.43 39.15 2.69
2160 2753 4.155709 CCTATGCAGAGGAGATCAACCTA 58.844 47.826 23.35 0.00 39.15 3.08
2161 2754 2.971330 CCTATGCAGAGGAGATCAACCT 59.029 50.000 23.35 10.57 39.15 3.50
2162 2755 2.549778 GCCTATGCAGAGGAGATCAACC 60.550 54.545 31.31 6.59 39.15 3.77
2163 2756 2.549778 GGCCTATGCAGAGGAGATCAAC 60.550 54.545 31.31 10.82 39.15 3.18
2164 2757 1.696336 GGCCTATGCAGAGGAGATCAA 59.304 52.381 31.31 0.00 39.15 2.57
2165 2758 1.346062 GGCCTATGCAGAGGAGATCA 58.654 55.000 31.31 0.00 39.15 2.92
2166 2759 0.612744 GGGCCTATGCAGAGGAGATC 59.387 60.000 31.31 12.71 39.15 2.75
2167 2760 0.104777 TGGGCCTATGCAGAGGAGAT 60.105 55.000 31.31 0.00 39.15 2.75
2168 2761 0.326522 TTGGGCCTATGCAGAGGAGA 60.327 55.000 31.31 10.35 39.15 3.71
2169 2762 0.179034 GTTGGGCCTATGCAGAGGAG 60.179 60.000 31.31 5.86 39.15 3.69
2170 2763 1.915228 GTTGGGCCTATGCAGAGGA 59.085 57.895 31.31 7.43 39.15 3.71
2171 2764 1.524621 CGTTGGGCCTATGCAGAGG 60.525 63.158 23.40 23.40 40.13 3.69
2172 2765 1.524621 CCGTTGGGCCTATGCAGAG 60.525 63.158 4.53 0.00 40.13 3.35
2173 2766 2.589540 CCGTTGGGCCTATGCAGA 59.410 61.111 4.53 0.00 40.13 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.