Multiple sequence alignment - TraesCS2D01G391500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G391500 chr2D 100.000 2480 0 0 1 2480 498765988 498768467 0.000000e+00 4580.0
1 TraesCS2D01G391500 chr2D 94.099 644 23 5 2 644 594597239 594596610 0.000000e+00 965.0
2 TraesCS2D01G391500 chr2D 84.032 620 49 32 727 1315 527648434 527647834 3.600000e-153 551.0
3 TraesCS2D01G391500 chr2D 97.321 112 2 1 1773 1884 498767694 498767804 3.260000e-44 189.0
4 TraesCS2D01G391500 chr2D 97.321 112 2 1 1707 1817 498767760 498767871 3.260000e-44 189.0
5 TraesCS2D01G391500 chr2D 93.478 46 2 1 1839 1884 498767694 498767738 1.590000e-07 67.6
6 TraesCS2D01G391500 chr2D 93.478 46 2 1 1707 1751 498767826 498767871 1.590000e-07 67.6
7 TraesCS2D01G391500 chr2B 92.182 857 43 8 648 1501 585889945 585890780 0.000000e+00 1190.0
8 TraesCS2D01G391500 chr2B 90.896 670 47 5 1820 2480 585891083 585891747 0.000000e+00 887.0
9 TraesCS2D01G391500 chr2B 95.706 326 14 0 994 1319 628157102 628157427 2.180000e-145 525.0
10 TraesCS2D01G391500 chr2B 100.000 39 0 0 2442 2480 768578233 768578195 3.420000e-09 73.1
11 TraesCS2D01G391500 chr7D 95.988 648 19 2 1 648 54987613 54988253 0.000000e+00 1046.0
12 TraesCS2D01G391500 chr7D 94.939 652 25 4 1 651 34179366 34178722 0.000000e+00 1014.0
13 TraesCS2D01G391500 chr5D 95.840 649 20 4 1 648 526658371 526659013 0.000000e+00 1042.0
14 TraesCS2D01G391500 chr5D 95.216 648 23 6 1 648 65978122 65978761 0.000000e+00 1018.0
15 TraesCS2D01G391500 chr5D 96.552 319 11 0 995 1313 405334716 405334398 1.690000e-146 529.0
16 TraesCS2D01G391500 chr5D 100.000 37 0 0 2444 2480 533542784 533542748 4.430000e-08 69.4
17 TraesCS2D01G391500 chr5D 97.436 39 1 0 2442 2480 412253279 412253317 1.590000e-07 67.6
18 TraesCS2D01G391500 chr3D 95.385 650 20 5 1 648 500603817 500603176 0.000000e+00 1026.0
19 TraesCS2D01G391500 chr4D 94.907 648 26 3 1 647 274216848 274217489 0.000000e+00 1007.0
20 TraesCS2D01G391500 chr1D 94.145 649 29 4 1 648 218970052 218970692 0.000000e+00 979.0
21 TraesCS2D01G391500 chr1D 100.000 39 0 0 2442 2480 111701867 111701905 3.420000e-09 73.1
22 TraesCS2D01G391500 chr1D 100.000 39 0 0 2442 2480 111710704 111710666 3.420000e-09 73.1
23 TraesCS2D01G391500 chr7A 92.923 650 29 7 1 648 624767063 624767697 0.000000e+00 929.0
24 TraesCS2D01G391500 chr7A 100.000 39 0 0 2442 2480 660478920 660478882 3.420000e-09 73.1
25 TraesCS2D01G391500 chr7A 97.436 39 0 1 2442 2480 16021565 16021528 5.730000e-07 65.8
26 TraesCS2D01G391500 chr2A 90.504 674 39 14 662 1316 643438142 643438809 0.000000e+00 867.0
27 TraesCS2D01G391500 chr2A 93.478 368 15 6 948 1312 673452093 673452454 2.810000e-149 538.0
28 TraesCS2D01G391500 chr2A 90.305 361 30 4 1820 2178 643439380 643439737 3.730000e-128 468.0
29 TraesCS2D01G391500 chr2A 93.160 307 15 2 2177 2480 643439863 643440166 1.750000e-121 446.0
30 TraesCS2D01G391500 chr2A 91.237 194 15 1 1380 1573 643438824 643439015 1.890000e-66 263.0
31 TraesCS2D01G391500 chr2A 96.970 33 1 0 2349 2381 643439830 643439862 3.450000e-04 56.5
32 TraesCS2D01G391500 chr6A 97.778 315 7 0 996 1310 484079446 484079132 6.030000e-151 544.0
33 TraesCS2D01G391500 chr1A 96.273 322 11 1 998 1319 541343820 541344140 6.070000e-146 527.0
34 TraesCS2D01G391500 chr3A 95.468 331 11 3 984 1310 602012305 602012635 2.180000e-145 525.0
35 TraesCS2D01G391500 chr5B 100.000 39 0 0 2442 2480 608634671 608634633 3.420000e-09 73.1
36 TraesCS2D01G391500 chr4A 100.000 39 0 0 2442 2480 718031042 718031004 3.420000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G391500 chr2D 498765988 498768467 2479 False 1018.64 4580 96.3196 1 2480 5 chr2D.!!$F1 2479
1 TraesCS2D01G391500 chr2D 594596610 594597239 629 True 965.00 965 94.0990 2 644 1 chr2D.!!$R2 642
2 TraesCS2D01G391500 chr2D 527647834 527648434 600 True 551.00 551 84.0320 727 1315 1 chr2D.!!$R1 588
3 TraesCS2D01G391500 chr2B 585889945 585891747 1802 False 1038.50 1190 91.5390 648 2480 2 chr2B.!!$F2 1832
4 TraesCS2D01G391500 chr7D 54987613 54988253 640 False 1046.00 1046 95.9880 1 648 1 chr7D.!!$F1 647
5 TraesCS2D01G391500 chr7D 34178722 34179366 644 True 1014.00 1014 94.9390 1 651 1 chr7D.!!$R1 650
6 TraesCS2D01G391500 chr5D 526658371 526659013 642 False 1042.00 1042 95.8400 1 648 1 chr5D.!!$F3 647
7 TraesCS2D01G391500 chr5D 65978122 65978761 639 False 1018.00 1018 95.2160 1 648 1 chr5D.!!$F1 647
8 TraesCS2D01G391500 chr3D 500603176 500603817 641 True 1026.00 1026 95.3850 1 648 1 chr3D.!!$R1 647
9 TraesCS2D01G391500 chr4D 274216848 274217489 641 False 1007.00 1007 94.9070 1 647 1 chr4D.!!$F1 646
10 TraesCS2D01G391500 chr1D 218970052 218970692 640 False 979.00 979 94.1450 1 648 1 chr1D.!!$F2 647
11 TraesCS2D01G391500 chr7A 624767063 624767697 634 False 929.00 929 92.9230 1 648 1 chr7A.!!$F1 647
12 TraesCS2D01G391500 chr2A 643438142 643440166 2024 False 420.10 867 92.4352 662 2480 5 chr2A.!!$F2 1818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 393 0.236187 CACGAAATTCGAAACCGCCA 59.764 50.0 22.92 0.0 43.74 5.69 F
988 1047 0.317160 CACACACCTGTCGGAGCTAA 59.683 55.0 0.00 0.0 0.00 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 1428 0.035881 ACAGCACACATCACAGAGGG 59.964 55.000 0.0 0.0 0.0 4.30 R
2319 2749 1.005805 TGCCCCAGTGCTTGATGTATT 59.994 47.619 0.0 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 142 1.499049 GAAAAACGAGCGACCTCACT 58.501 50.000 0.00 0.00 38.00 3.41
283 290 1.303282 GGATTTGGAACCGCCTCCT 59.697 57.895 3.05 0.00 36.35 3.69
333 340 1.208165 AAAGAGGAGGAATGGGCGGT 61.208 55.000 0.00 0.00 0.00 5.68
346 353 4.394712 GCGGTGAGAGGTGGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
347 354 3.706373 CGGTGAGAGGTGGGGTGG 61.706 72.222 0.00 0.00 0.00 4.61
348 355 3.330720 GGTGAGAGGTGGGGTGGG 61.331 72.222 0.00 0.00 0.00 4.61
349 356 3.330720 GTGAGAGGTGGGGTGGGG 61.331 72.222 0.00 0.00 0.00 4.96
386 393 0.236187 CACGAAATTCGAAACCGCCA 59.764 50.000 22.92 0.00 43.74 5.69
391 398 0.610785 AATTCGAAACCGCCACCCAT 60.611 50.000 0.00 0.00 0.00 4.00
467 474 1.140161 CACGGGCGGTTTATCTCGA 59.860 57.895 0.00 0.00 0.00 4.04
659 667 7.996098 TTAGATTTTAGGACAGTTCAAAGGG 57.004 36.000 0.00 0.00 0.00 3.95
660 668 5.953571 AGATTTTAGGACAGTTCAAAGGGT 58.046 37.500 0.00 0.00 0.00 4.34
664 672 7.957992 TTTTAGGACAGTTCAAAGGGTAAAA 57.042 32.000 0.00 0.00 0.00 1.52
665 673 7.957992 TTTAGGACAGTTCAAAGGGTAAAAA 57.042 32.000 0.00 0.00 0.00 1.94
726 736 4.820284 GGTCTCCGATTTCAAATCCATC 57.180 45.455 4.47 0.00 0.00 3.51
727 737 3.565902 GGTCTCCGATTTCAAATCCATCC 59.434 47.826 4.47 0.00 0.00 3.51
728 738 3.565902 GTCTCCGATTTCAAATCCATCCC 59.434 47.826 4.47 0.00 0.00 3.85
729 739 2.887152 CTCCGATTTCAAATCCATCCCC 59.113 50.000 4.47 0.00 0.00 4.81
730 740 1.608590 CCGATTTCAAATCCATCCCCG 59.391 52.381 4.47 0.00 0.00 5.73
731 741 1.001378 CGATTTCAAATCCATCCCCGC 60.001 52.381 4.47 0.00 0.00 6.13
732 742 2.310538 GATTTCAAATCCATCCCCGCT 58.689 47.619 0.00 0.00 0.00 5.52
797 816 1.566231 ACCCCATCTGACCCTTCATTC 59.434 52.381 0.00 0.00 0.00 2.67
882 913 2.489751 CAAAATCCCGCGCTTCCC 59.510 61.111 5.56 0.00 0.00 3.97
883 914 2.754254 AAAATCCCGCGCTTCCCC 60.754 61.111 5.56 0.00 0.00 4.81
884 915 4.815108 AAATCCCGCGCTTCCCCC 62.815 66.667 5.56 0.00 0.00 5.40
933 973 2.440247 CTCCGCCCCAAATCCCAC 60.440 66.667 0.00 0.00 0.00 4.61
978 1037 2.566833 TCTTCCCAATCACACACCTG 57.433 50.000 0.00 0.00 0.00 4.00
988 1047 0.317160 CACACACCTGTCGGAGCTAA 59.683 55.000 0.00 0.00 0.00 3.09
989 1048 0.317479 ACACACCTGTCGGAGCTAAC 59.683 55.000 0.00 0.00 0.00 2.34
1316 1375 2.202892 CTTCGGCGGCTAGGTTCC 60.203 66.667 7.21 0.00 0.00 3.62
1326 1385 1.551019 GCTAGGTTCCTGGGTTCCGT 61.551 60.000 1.12 0.00 0.00 4.69
1327 1386 0.981943 CTAGGTTCCTGGGTTCCGTT 59.018 55.000 1.12 0.00 0.00 4.44
1334 1393 3.783362 CTGGGTTCCGTTGGTGGCA 62.783 63.158 0.00 0.00 0.00 4.92
1336 1395 3.670377 GGTTCCGTTGGTGGCAGC 61.670 66.667 10.30 10.30 0.00 5.25
1341 1400 4.034258 CGTTGGTGGCAGCAGCAG 62.034 66.667 28.39 18.72 44.61 4.24
1342 1401 2.908940 GTTGGTGGCAGCAGCAGT 60.909 61.111 25.42 0.00 44.61 4.40
1345 1404 3.667282 GGTGGCAGCAGCAGTGTG 61.667 66.667 12.58 0.00 44.61 3.82
1350 1409 2.333938 CAGCAGCAGTGTGGTTGC 59.666 61.111 0.00 0.00 44.22 4.17
1352 1411 4.332637 GCAGCAGTGTGGTTGCGG 62.333 66.667 0.00 0.00 45.98 5.69
1364 1423 1.595382 GTTGCGGCTGTGTCTGTCT 60.595 57.895 0.00 0.00 0.00 3.41
1369 1428 1.835483 CGGCTGTGTCTGTCTTGTGC 61.835 60.000 0.00 0.00 0.00 4.57
1406 1465 3.813443 CTGTGGGAGATGGGATTTACTG 58.187 50.000 0.00 0.00 0.00 2.74
1448 1507 2.030457 GTGTTCCGTGTCTTGTGTTCAG 59.970 50.000 0.00 0.00 0.00 3.02
1461 1520 7.042335 GTCTTGTGTTCAGTAGGCTGTAATAT 58.958 38.462 0.00 0.00 43.05 1.28
1504 1563 5.777732 ACTAGTTCTGTTCTGAATCCTGACT 59.222 40.000 0.00 0.00 0.00 3.41
1507 1797 4.277515 TCTGTTCTGAATCCTGACTTGG 57.722 45.455 0.00 0.00 0.00 3.61
1557 1847 8.761575 AAATGCAATTGAATGAACGATTTACT 57.238 26.923 10.34 0.00 36.10 2.24
1573 1863 4.921470 TTTACTACTCGTTGCAATCTGC 57.079 40.909 0.59 0.00 45.29 4.26
1598 1888 7.415989 GCAGAAGAGATGCATCCTTTTGATTTA 60.416 37.037 30.74 0.00 43.31 1.40
1602 1892 7.994194 AGAGATGCATCCTTTTGATTTAGTTC 58.006 34.615 23.06 8.68 0.00 3.01
1627 1917 1.003118 TCACTGGGGAACGAATCTTGG 59.997 52.381 0.00 0.00 0.00 3.61
1633 1924 3.319689 TGGGGAACGAATCTTGGTTTTTC 59.680 43.478 0.00 0.00 0.00 2.29
1662 1953 2.627221 GCAGATCTACAGATGCAGAGGA 59.373 50.000 0.00 0.00 34.37 3.71
1663 1954 3.258872 GCAGATCTACAGATGCAGAGGAT 59.741 47.826 0.00 0.00 34.37 3.24
1665 1956 5.472148 CAGATCTACAGATGCAGAGGATTC 58.528 45.833 0.00 0.00 34.37 2.52
1686 1983 5.191727 TCATTGTTGGGAGTGGTATGAAT 57.808 39.130 0.00 0.00 0.00 2.57
1687 1984 5.579047 TCATTGTTGGGAGTGGTATGAATT 58.421 37.500 0.00 0.00 0.00 2.17
1691 1988 4.536090 TGTTGGGAGTGGTATGAATTCTCT 59.464 41.667 7.05 0.00 0.00 3.10
1692 1989 4.760530 TGGGAGTGGTATGAATTCTCTG 57.239 45.455 7.05 0.00 0.00 3.35
1697 1994 7.092444 TGGGAGTGGTATGAATTCTCTGTAAAT 60.092 37.037 7.05 0.00 0.00 1.40
1720 2017 8.877864 AATATGTGAAACTAAAATCCTGACCA 57.122 30.769 0.00 0.00 38.04 4.02
1721 2018 8.877864 ATATGTGAAACTAAAATCCTGACCAA 57.122 30.769 0.00 0.00 38.04 3.67
1722 2019 6.633500 TGTGAAACTAAAATCCTGACCAAG 57.367 37.500 0.00 0.00 38.04 3.61
1723 2020 6.126409 TGTGAAACTAAAATCCTGACCAAGT 58.874 36.000 0.00 0.00 38.04 3.16
1724 2021 6.039270 TGTGAAACTAAAATCCTGACCAAGTG 59.961 38.462 0.00 0.00 38.04 3.16
1725 2022 6.039382 GTGAAACTAAAATCCTGACCAAGTGT 59.961 38.462 0.00 0.00 0.00 3.55
1726 2023 6.605594 TGAAACTAAAATCCTGACCAAGTGTT 59.394 34.615 0.00 0.00 0.00 3.32
1727 2024 7.123547 TGAAACTAAAATCCTGACCAAGTGTTT 59.876 33.333 0.00 0.00 0.00 2.83
1728 2025 7.418337 AACTAAAATCCTGACCAAGTGTTTT 57.582 32.000 0.00 0.00 0.00 2.43
1729 2026 6.805713 ACTAAAATCCTGACCAAGTGTTTTG 58.194 36.000 0.00 0.00 0.00 2.44
1730 2027 3.733443 AATCCTGACCAAGTGTTTTGC 57.267 42.857 0.00 0.00 0.00 3.68
1731 2028 2.435372 TCCTGACCAAGTGTTTTGCT 57.565 45.000 0.00 0.00 0.00 3.91
1732 2029 2.023673 TCCTGACCAAGTGTTTTGCTG 58.976 47.619 0.00 0.00 0.00 4.41
1733 2030 1.750778 CCTGACCAAGTGTTTTGCTGT 59.249 47.619 0.00 0.00 0.00 4.40
1734 2031 2.480073 CCTGACCAAGTGTTTTGCTGTG 60.480 50.000 0.00 0.00 0.00 3.66
1735 2032 2.164219 CTGACCAAGTGTTTTGCTGTGT 59.836 45.455 0.00 0.00 0.00 3.72
1736 2033 2.560542 TGACCAAGTGTTTTGCTGTGTT 59.439 40.909 0.00 0.00 0.00 3.32
1737 2034 2.923020 GACCAAGTGTTTTGCTGTGTTG 59.077 45.455 0.00 0.00 0.00 3.33
1738 2035 2.560542 ACCAAGTGTTTTGCTGTGTTGA 59.439 40.909 0.00 0.00 0.00 3.18
1739 2036 3.006323 ACCAAGTGTTTTGCTGTGTTGAA 59.994 39.130 0.00 0.00 0.00 2.69
1740 2037 4.183101 CCAAGTGTTTTGCTGTGTTGAAT 58.817 39.130 0.00 0.00 0.00 2.57
1741 2038 4.268405 CCAAGTGTTTTGCTGTGTTGAATC 59.732 41.667 0.00 0.00 0.00 2.52
1742 2039 4.989279 AGTGTTTTGCTGTGTTGAATCT 57.011 36.364 0.00 0.00 0.00 2.40
1743 2040 4.675510 AGTGTTTTGCTGTGTTGAATCTG 58.324 39.130 0.00 0.00 0.00 2.90
1744 2041 4.158394 AGTGTTTTGCTGTGTTGAATCTGT 59.842 37.500 0.00 0.00 0.00 3.41
1745 2042 4.266029 GTGTTTTGCTGTGTTGAATCTGTG 59.734 41.667 0.00 0.00 0.00 3.66
1746 2043 4.082300 TGTTTTGCTGTGTTGAATCTGTGT 60.082 37.500 0.00 0.00 0.00 3.72
1747 2044 4.717233 TTTGCTGTGTTGAATCTGTGTT 57.283 36.364 0.00 0.00 0.00 3.32
1748 2045 3.696281 TGCTGTGTTGAATCTGTGTTG 57.304 42.857 0.00 0.00 0.00 3.33
1749 2046 3.277715 TGCTGTGTTGAATCTGTGTTGA 58.722 40.909 0.00 0.00 0.00 3.18
1750 2047 3.884693 TGCTGTGTTGAATCTGTGTTGAT 59.115 39.130 0.00 0.00 0.00 2.57
1751 2048 5.062528 TGCTGTGTTGAATCTGTGTTGATA 58.937 37.500 0.00 0.00 0.00 2.15
1752 2049 5.049474 TGCTGTGTTGAATCTGTGTTGATAC 60.049 40.000 0.00 0.00 0.00 2.24
1791 2088 2.711009 TCCTGAAATCCTGACCAAGTGT 59.289 45.455 0.00 0.00 0.00 3.55
1794 2091 4.342092 CCTGAAATCCTGACCAAGTGTTTT 59.658 41.667 0.00 0.00 0.00 2.43
1796 2093 3.733443 AATCCTGACCAAGTGTTTTGC 57.267 42.857 0.00 0.00 0.00 3.68
1797 2094 2.435372 TCCTGACCAAGTGTTTTGCT 57.565 45.000 0.00 0.00 0.00 3.91
1798 2095 2.023673 TCCTGACCAAGTGTTTTGCTG 58.976 47.619 0.00 0.00 0.00 4.41
1799 2096 1.750778 CCTGACCAAGTGTTTTGCTGT 59.249 47.619 0.00 0.00 0.00 4.40
1800 2097 2.480073 CCTGACCAAGTGTTTTGCTGTG 60.480 50.000 0.00 0.00 0.00 3.66
1801 2098 2.164219 CTGACCAAGTGTTTTGCTGTGT 59.836 45.455 0.00 0.00 0.00 3.72
1802 2099 2.560542 TGACCAAGTGTTTTGCTGTGTT 59.439 40.909 0.00 0.00 0.00 3.32
1803 2100 2.923020 GACCAAGTGTTTTGCTGTGTTG 59.077 45.455 0.00 0.00 0.00 3.33
1804 2101 2.560542 ACCAAGTGTTTTGCTGTGTTGA 59.439 40.909 0.00 0.00 0.00 3.18
1805 2102 3.006323 ACCAAGTGTTTTGCTGTGTTGAA 59.994 39.130 0.00 0.00 0.00 2.69
1806 2103 4.183101 CCAAGTGTTTTGCTGTGTTGAAT 58.817 39.130 0.00 0.00 0.00 2.57
1807 2104 4.268405 CCAAGTGTTTTGCTGTGTTGAATC 59.732 41.667 0.00 0.00 0.00 2.52
1808 2105 4.989279 AGTGTTTTGCTGTGTTGAATCT 57.011 36.364 0.00 0.00 0.00 2.40
1809 2106 4.675510 AGTGTTTTGCTGTGTTGAATCTG 58.324 39.130 0.00 0.00 0.00 2.90
1810 2107 4.158394 AGTGTTTTGCTGTGTTGAATCTGT 59.842 37.500 0.00 0.00 0.00 3.41
1811 2108 4.266029 GTGTTTTGCTGTGTTGAATCTGTG 59.734 41.667 0.00 0.00 0.00 3.66
1812 2109 4.082300 TGTTTTGCTGTGTTGAATCTGTGT 60.082 37.500 0.00 0.00 0.00 3.72
1813 2110 4.717233 TTTGCTGTGTTGAATCTGTGTT 57.283 36.364 0.00 0.00 0.00 3.32
1814 2111 3.696281 TGCTGTGTTGAATCTGTGTTG 57.304 42.857 0.00 0.00 0.00 3.33
1815 2112 3.277715 TGCTGTGTTGAATCTGTGTTGA 58.722 40.909 0.00 0.00 0.00 3.18
1816 2113 3.884693 TGCTGTGTTGAATCTGTGTTGAT 59.115 39.130 0.00 0.00 0.00 2.57
1817 2114 5.062528 TGCTGTGTTGAATCTGTGTTGATA 58.937 37.500 0.00 0.00 0.00 2.15
1818 2115 5.049474 TGCTGTGTTGAATCTGTGTTGATAC 60.049 40.000 0.00 0.00 0.00 2.24
1819 2116 5.049474 GCTGTGTTGAATCTGTGTTGATACA 60.049 40.000 0.00 0.00 0.00 2.29
1828 2125 3.378911 TGTGTTGATACAGACGCAAGA 57.621 42.857 0.00 0.00 36.19 3.02
1829 2126 3.925379 TGTGTTGATACAGACGCAAGAT 58.075 40.909 0.00 0.00 36.19 2.40
1830 2127 5.066968 TGTGTTGATACAGACGCAAGATA 57.933 39.130 0.00 0.00 36.19 1.98
1831 2128 4.862574 TGTGTTGATACAGACGCAAGATAC 59.137 41.667 0.00 0.00 36.19 2.24
1832 2129 4.267928 GTGTTGATACAGACGCAAGATACC 59.732 45.833 0.00 0.00 36.19 2.73
1833 2130 4.159693 TGTTGATACAGACGCAAGATACCT 59.840 41.667 0.00 0.00 43.62 3.08
1834 2131 5.358725 TGTTGATACAGACGCAAGATACCTA 59.641 40.000 0.00 0.00 43.62 3.08
1835 2132 6.040504 TGTTGATACAGACGCAAGATACCTAT 59.959 38.462 0.00 0.00 43.62 2.57
1836 2133 6.650427 TGATACAGACGCAAGATACCTATT 57.350 37.500 0.00 0.00 43.62 1.73
1837 2134 6.678878 TGATACAGACGCAAGATACCTATTC 58.321 40.000 0.00 0.00 43.62 1.75
1838 2135 4.323553 ACAGACGCAAGATACCTATTCC 57.676 45.455 0.00 0.00 43.62 3.01
1839 2136 3.961408 ACAGACGCAAGATACCTATTCCT 59.039 43.478 0.00 0.00 43.62 3.36
1840 2137 4.202161 ACAGACGCAAGATACCTATTCCTG 60.202 45.833 0.00 0.00 43.62 3.86
1841 2138 4.038042 CAGACGCAAGATACCTATTCCTGA 59.962 45.833 0.00 0.00 43.62 3.86
1842 2139 4.649674 AGACGCAAGATACCTATTCCTGAA 59.350 41.667 0.00 0.00 43.62 3.02
1843 2140 5.128827 AGACGCAAGATACCTATTCCTGAAA 59.871 40.000 0.00 0.00 43.62 2.69
1844 2141 5.930135 ACGCAAGATACCTATTCCTGAAAT 58.070 37.500 0.00 0.00 43.62 2.17
1845 2142 5.992217 ACGCAAGATACCTATTCCTGAAATC 59.008 40.000 0.00 0.00 43.62 2.17
1846 2143 5.409826 CGCAAGATACCTATTCCTGAAATCC 59.590 44.000 0.00 0.00 43.02 3.01
1847 2144 6.538263 GCAAGATACCTATTCCTGAAATCCT 58.462 40.000 0.00 0.00 0.00 3.24
1848 2145 6.429385 GCAAGATACCTATTCCTGAAATCCTG 59.571 42.308 0.00 0.00 0.00 3.86
1849 2146 7.690301 GCAAGATACCTATTCCTGAAATCCTGA 60.690 40.741 0.00 0.00 0.00 3.86
1850 2147 7.309770 AGATACCTATTCCTGAAATCCTGAC 57.690 40.000 0.00 0.00 0.00 3.51
1851 2148 4.779993 ACCTATTCCTGAAATCCTGACC 57.220 45.455 0.00 0.00 0.00 4.02
1852 2149 4.111577 ACCTATTCCTGAAATCCTGACCA 58.888 43.478 0.00 0.00 0.00 4.02
1853 2150 4.540099 ACCTATTCCTGAAATCCTGACCAA 59.460 41.667 0.00 0.00 0.00 3.67
1854 2151 5.128919 CCTATTCCTGAAATCCTGACCAAG 58.871 45.833 0.00 0.00 0.00 3.61
1855 2152 4.664688 ATTCCTGAAATCCTGACCAAGT 57.335 40.909 0.00 0.00 0.00 3.16
1856 2153 3.423539 TCCTGAAATCCTGACCAAGTG 57.576 47.619 0.00 0.00 0.00 3.16
1857 2154 2.711009 TCCTGAAATCCTGACCAAGTGT 59.289 45.455 0.00 0.00 0.00 3.55
1858 2155 3.138283 TCCTGAAATCCTGACCAAGTGTT 59.862 43.478 0.00 0.00 0.00 3.32
1859 2156 3.891366 CCTGAAATCCTGACCAAGTGTTT 59.109 43.478 0.00 0.00 0.00 2.83
1860 2157 4.342092 CCTGAAATCCTGACCAAGTGTTTT 59.658 41.667 0.00 0.00 0.00 2.43
1861 2158 5.261209 TGAAATCCTGACCAAGTGTTTTG 57.739 39.130 0.00 0.00 0.00 2.44
1862 2159 3.733443 AATCCTGACCAAGTGTTTTGC 57.267 42.857 0.00 0.00 0.00 3.68
1888 2185 8.195617 TGTGTTGAATCTGGTTTTGATTTTTC 57.804 30.769 0.00 0.00 34.67 2.29
1954 2251 4.647611 AGATCGTATAGCTCTACTGCTGT 58.352 43.478 7.57 0.66 43.87 4.40
1967 2264 6.584185 TCTACTGCTGTGACTGTACATTTA 57.416 37.500 6.48 0.00 0.00 1.40
1976 2273 9.968743 GCTGTGACTGTACATTTAAGTTATAAC 57.031 33.333 7.57 7.57 0.00 1.89
2047 2344 6.154877 TGCAATGGATCCAGTATTGAACATTT 59.845 34.615 24.50 6.83 34.55 2.32
2064 2361 6.817641 TGAACATTTGAGTTGTTGCTGAAATT 59.182 30.769 0.00 0.00 37.43 1.82
2067 2364 6.477688 ACATTTGAGTTGTTGCTGAAATTCAG 59.522 34.615 18.02 18.02 46.90 3.02
2111 2408 4.867047 CGTTGCAATCTGTAGAAGAGATGT 59.133 41.667 0.59 0.00 38.67 3.06
2123 2420 7.179966 TGTAGAAGAGATGTACCCTTCTGTTA 58.820 38.462 18.81 8.61 44.30 2.41
2133 2430 3.828921 ACCCTTCTGTTAGGTTTTGGTC 58.171 45.455 0.00 0.00 33.17 4.02
2144 2441 2.787035 AGGTTTTGGTCTTACTGGGGAA 59.213 45.455 0.00 0.00 0.00 3.97
2156 2455 6.659242 GTCTTACTGGGGAATGAATCTTGAAA 59.341 38.462 0.00 0.00 0.00 2.69
2160 2459 6.939622 ACTGGGGAATGAATCTTGAAATTTC 58.060 36.000 11.41 11.41 0.00 2.17
2168 2467 9.367444 GAATGAATCTTGAAATTTCTTCTGCAT 57.633 29.630 18.64 11.79 0.00 3.96
2307 2737 2.871022 GCATGTGGAGCAACTATCAGAG 59.129 50.000 0.00 0.00 0.00 3.35
2343 2773 0.698238 ATCAAGCACTGGGGCAACTA 59.302 50.000 0.00 0.00 35.83 2.24
2454 2891 6.552445 ATGTAGAACAACTATCTGAGGCTT 57.448 37.500 0.00 0.00 33.39 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 77 0.731994 GGTCGAGGTAGAGGTCGAAC 59.268 60.000 0.00 0.00 46.18 3.95
117 124 2.295349 TCTAGTGAGGTCGCTCGTTTTT 59.705 45.455 0.00 0.00 37.87 1.94
283 290 2.661840 TTCGCCGTTGGTTGGTGCTA 62.662 55.000 0.00 0.00 36.92 3.49
333 340 4.675303 CCCCCACCCCACCTCTCA 62.675 72.222 0.00 0.00 0.00 3.27
347 354 2.693490 ATTACCCCGTCCACCCCC 60.693 66.667 0.00 0.00 0.00 5.40
348 355 2.593420 CATTACCCCGTCCACCCC 59.407 66.667 0.00 0.00 0.00 4.95
349 356 2.593420 CCATTACCCCGTCCACCC 59.407 66.667 0.00 0.00 0.00 4.61
386 393 2.125832 CCGTCGTGCGTAATGGGT 60.126 61.111 0.00 0.00 39.32 4.51
391 398 0.783579 GTTTTAGCCGTCGTGCGTAA 59.216 50.000 0.00 0.00 39.32 3.18
664 672 4.815846 GGTGGATTGCAATGTTTCTGTTTT 59.184 37.500 18.59 0.00 0.00 2.43
665 673 4.379652 GGTGGATTGCAATGTTTCTGTTT 58.620 39.130 18.59 0.00 0.00 2.83
666 674 3.552684 CGGTGGATTGCAATGTTTCTGTT 60.553 43.478 18.59 0.00 0.00 3.16
667 675 2.030007 CGGTGGATTGCAATGTTTCTGT 60.030 45.455 18.59 0.00 0.00 3.41
672 680 1.212490 CGCGGTGGATTGCAATGTT 59.788 52.632 18.59 0.00 0.00 2.71
712 722 2.310538 AGCGGGGATGGATTTGAAATC 58.689 47.619 9.36 9.36 0.00 2.17
785 804 3.430453 GTTGGATTGGAATGAAGGGTCA 58.570 45.455 0.00 0.00 38.41 4.02
797 816 2.686816 GCGTGGGACGTTGGATTGG 61.687 63.158 0.00 0.00 44.73 3.16
860 890 3.059386 GCGCGGGATTTTGGTGGA 61.059 61.111 8.83 0.00 0.00 4.02
883 914 4.522975 GAGGATTTGGGGGCGGGG 62.523 72.222 0.00 0.00 0.00 5.73
884 915 4.522975 GGAGGATTTGGGGGCGGG 62.523 72.222 0.00 0.00 0.00 6.13
885 916 4.522975 GGGAGGATTTGGGGGCGG 62.523 72.222 0.00 0.00 0.00 6.13
886 917 4.875713 CGGGAGGATTTGGGGGCG 62.876 72.222 0.00 0.00 0.00 6.13
887 918 1.423794 TATCGGGAGGATTTGGGGGC 61.424 60.000 0.00 0.00 36.55 5.80
925 965 2.242043 CTGAAGCTTGTGGTGGGATTT 58.758 47.619 2.10 0.00 0.00 2.17
953 1010 2.040278 TGTGTGATTGGGAAGAAGAGGG 59.960 50.000 0.00 0.00 0.00 4.30
1312 1371 1.149854 ACCAACGGAACCCAGGAAC 59.850 57.895 0.00 0.00 0.00 3.62
1316 1375 2.983592 GCCACCAACGGAACCCAG 60.984 66.667 0.00 0.00 0.00 4.45
1326 1385 2.908428 CACTGCTGCTGCCACCAA 60.908 61.111 13.47 0.00 38.71 3.67
1327 1386 4.193893 ACACTGCTGCTGCCACCA 62.194 61.111 13.47 0.00 38.71 4.17
1334 1393 3.282157 CGCAACCACACTGCTGCT 61.282 61.111 0.00 0.00 37.67 4.24
1336 1395 4.332637 GCCGCAACCACACTGCTG 62.333 66.667 0.00 0.00 37.67 4.41
1340 1399 2.901840 CACAGCCGCAACCACACT 60.902 61.111 0.00 0.00 0.00 3.55
1341 1400 3.181169 GACACAGCCGCAACCACAC 62.181 63.158 0.00 0.00 0.00 3.82
1342 1401 2.899838 GACACAGCCGCAACCACA 60.900 61.111 0.00 0.00 0.00 4.17
1345 1404 2.591715 ACAGACACAGCCGCAACC 60.592 61.111 0.00 0.00 0.00 3.77
1350 1409 1.835483 GCACAAGACAGACACAGCCG 61.835 60.000 0.00 0.00 0.00 5.52
1352 1411 1.510480 GGGCACAAGACAGACACAGC 61.510 60.000 0.00 0.00 0.00 4.40
1364 1423 0.473755 ACACATCACAGAGGGCACAA 59.526 50.000 0.00 0.00 0.00 3.33
1369 1428 0.035881 ACAGCACACATCACAGAGGG 59.964 55.000 0.00 0.00 0.00 4.30
1448 1507 4.211374 CCGCAACAAGATATTACAGCCTAC 59.789 45.833 0.00 0.00 0.00 3.18
1461 1520 2.948979 AGTTTCATTGACCGCAACAAGA 59.051 40.909 2.71 0.00 36.72 3.02
1504 1563 5.534207 AAGTCAAATCAATTGCACTCCAA 57.466 34.783 0.00 0.00 38.98 3.53
1507 1797 5.798934 CAGCTAAGTCAAATCAATTGCACTC 59.201 40.000 0.00 0.00 38.98 3.51
1573 1863 6.452494 AATCAAAAGGATGCATCTCTTCTG 57.548 37.500 25.28 20.95 36.02 3.02
1598 1888 0.841289 TTCCCCAGTGAAACCGAACT 59.159 50.000 0.00 0.00 37.80 3.01
1602 1892 0.533308 TTCGTTCCCCAGTGAAACCG 60.533 55.000 0.00 0.00 37.80 4.44
1627 1917 6.959361 TGTAGATCTGCACAGAAAGAAAAAC 58.041 36.000 9.69 0.00 41.36 2.43
1662 1953 5.191727 TCATACCACTCCCAACAATGAAT 57.808 39.130 0.00 0.00 0.00 2.57
1663 1954 4.649267 TCATACCACTCCCAACAATGAA 57.351 40.909 0.00 0.00 0.00 2.57
1665 1956 5.653769 AGAATTCATACCACTCCCAACAATG 59.346 40.000 8.44 0.00 0.00 2.82
1697 1994 7.942341 ACTTGGTCAGGATTTTAGTTTCACATA 59.058 33.333 0.00 0.00 0.00 2.29
1706 2003 5.691754 GCAAAACACTTGGTCAGGATTTTAG 59.308 40.000 0.00 0.00 0.00 1.85
1707 2004 5.362430 AGCAAAACACTTGGTCAGGATTTTA 59.638 36.000 0.00 0.00 0.00 1.52
1709 2006 3.706086 AGCAAAACACTTGGTCAGGATTT 59.294 39.130 0.00 0.00 0.00 2.17
1710 2007 3.068590 CAGCAAAACACTTGGTCAGGATT 59.931 43.478 0.00 0.00 0.00 3.01
1711 2008 2.624838 CAGCAAAACACTTGGTCAGGAT 59.375 45.455 0.00 0.00 0.00 3.24
1712 2009 2.023673 CAGCAAAACACTTGGTCAGGA 58.976 47.619 0.00 0.00 0.00 3.86
1713 2010 1.750778 ACAGCAAAACACTTGGTCAGG 59.249 47.619 0.00 0.00 0.00 3.86
1714 2011 2.164219 ACACAGCAAAACACTTGGTCAG 59.836 45.455 0.00 0.00 0.00 3.51
1715 2012 2.166829 ACACAGCAAAACACTTGGTCA 58.833 42.857 0.00 0.00 0.00 4.02
1716 2013 2.923020 CAACACAGCAAAACACTTGGTC 59.077 45.455 0.00 0.00 0.00 4.02
1717 2014 2.560542 TCAACACAGCAAAACACTTGGT 59.439 40.909 0.00 0.00 0.00 3.67
1718 2015 3.229276 TCAACACAGCAAAACACTTGG 57.771 42.857 0.00 0.00 0.00 3.61
1719 2016 5.005012 CAGATTCAACACAGCAAAACACTTG 59.995 40.000 0.00 0.00 0.00 3.16
1720 2017 5.104374 CAGATTCAACACAGCAAAACACTT 58.896 37.500 0.00 0.00 0.00 3.16
1721 2018 4.158394 ACAGATTCAACACAGCAAAACACT 59.842 37.500 0.00 0.00 0.00 3.55
1722 2019 4.266029 CACAGATTCAACACAGCAAAACAC 59.734 41.667 0.00 0.00 0.00 3.32
1723 2020 4.082300 ACACAGATTCAACACAGCAAAACA 60.082 37.500 0.00 0.00 0.00 2.83
1724 2021 4.423732 ACACAGATTCAACACAGCAAAAC 58.576 39.130 0.00 0.00 0.00 2.43
1725 2022 4.717233 ACACAGATTCAACACAGCAAAA 57.283 36.364 0.00 0.00 0.00 2.44
1726 2023 4.157472 TCAACACAGATTCAACACAGCAAA 59.843 37.500 0.00 0.00 0.00 3.68
1727 2024 3.693578 TCAACACAGATTCAACACAGCAA 59.306 39.130 0.00 0.00 0.00 3.91
1728 2025 3.277715 TCAACACAGATTCAACACAGCA 58.722 40.909 0.00 0.00 0.00 4.41
1729 2026 3.969117 TCAACACAGATTCAACACAGC 57.031 42.857 0.00 0.00 0.00 4.40
1730 2027 6.544038 TGTATCAACACAGATTCAACACAG 57.456 37.500 0.00 0.00 0.00 3.66
1741 2038 3.317150 TCTTGCGTCTGTATCAACACAG 58.683 45.455 0.00 0.00 46.04 3.66
1742 2039 3.378911 TCTTGCGTCTGTATCAACACA 57.621 42.857 0.00 0.00 0.00 3.72
1743 2040 4.267928 GGTATCTTGCGTCTGTATCAACAC 59.732 45.833 0.00 0.00 0.00 3.32
1744 2041 4.159693 AGGTATCTTGCGTCTGTATCAACA 59.840 41.667 0.00 0.00 0.00 3.33
1745 2042 4.683832 AGGTATCTTGCGTCTGTATCAAC 58.316 43.478 0.00 0.00 0.00 3.18
1746 2043 6.650427 ATAGGTATCTTGCGTCTGTATCAA 57.350 37.500 0.00 0.00 0.00 2.57
1747 2044 6.294564 GGAATAGGTATCTTGCGTCTGTATCA 60.295 42.308 0.00 0.00 0.00 2.15
1748 2045 6.071840 AGGAATAGGTATCTTGCGTCTGTATC 60.072 42.308 0.00 0.00 0.00 2.24
1749 2046 5.775701 AGGAATAGGTATCTTGCGTCTGTAT 59.224 40.000 0.00 0.00 0.00 2.29
1750 2047 5.009710 CAGGAATAGGTATCTTGCGTCTGTA 59.990 44.000 0.00 0.00 0.00 2.74
1751 2048 3.961408 AGGAATAGGTATCTTGCGTCTGT 59.039 43.478 0.00 0.00 0.00 3.41
1752 2049 4.038042 TCAGGAATAGGTATCTTGCGTCTG 59.962 45.833 0.00 0.00 0.00 3.51
1791 2088 4.717233 ACACAGATTCAACACAGCAAAA 57.283 36.364 0.00 0.00 0.00 2.44
1794 2091 3.277715 TCAACACAGATTCAACACAGCA 58.722 40.909 0.00 0.00 0.00 4.41
1796 2093 6.544038 TGTATCAACACAGATTCAACACAG 57.456 37.500 0.00 0.00 0.00 3.66
1807 2104 3.317150 TCTTGCGTCTGTATCAACACAG 58.683 45.455 0.00 0.00 46.04 3.66
1808 2105 3.378911 TCTTGCGTCTGTATCAACACA 57.621 42.857 0.00 0.00 0.00 3.72
1809 2106 4.267928 GGTATCTTGCGTCTGTATCAACAC 59.732 45.833 0.00 0.00 0.00 3.32
1810 2107 4.159693 AGGTATCTTGCGTCTGTATCAACA 59.840 41.667 0.00 0.00 0.00 3.33
1811 2108 4.683832 AGGTATCTTGCGTCTGTATCAAC 58.316 43.478 0.00 0.00 0.00 3.18
1812 2109 6.650427 ATAGGTATCTTGCGTCTGTATCAA 57.350 37.500 0.00 0.00 0.00 2.57
1813 2110 6.294564 GGAATAGGTATCTTGCGTCTGTATCA 60.295 42.308 0.00 0.00 0.00 2.15
1814 2111 6.071840 AGGAATAGGTATCTTGCGTCTGTATC 60.072 42.308 0.00 0.00 0.00 2.24
1815 2112 5.775701 AGGAATAGGTATCTTGCGTCTGTAT 59.224 40.000 0.00 0.00 0.00 2.29
1816 2113 5.009710 CAGGAATAGGTATCTTGCGTCTGTA 59.990 44.000 0.00 0.00 0.00 2.74
1817 2114 3.961408 AGGAATAGGTATCTTGCGTCTGT 59.039 43.478 0.00 0.00 0.00 3.41
1818 2115 4.038042 TCAGGAATAGGTATCTTGCGTCTG 59.962 45.833 0.00 0.00 0.00 3.51
1819 2116 4.215908 TCAGGAATAGGTATCTTGCGTCT 58.784 43.478 0.00 0.00 0.00 4.18
1820 2117 4.585955 TCAGGAATAGGTATCTTGCGTC 57.414 45.455 0.00 0.00 0.00 5.19
1821 2118 5.353394 TTTCAGGAATAGGTATCTTGCGT 57.647 39.130 0.00 0.00 0.00 5.24
1822 2119 5.409826 GGATTTCAGGAATAGGTATCTTGCG 59.590 44.000 0.00 0.00 0.00 4.85
1823 2120 6.429385 CAGGATTTCAGGAATAGGTATCTTGC 59.571 42.308 0.00 0.00 0.00 4.01
1824 2121 7.659390 GTCAGGATTTCAGGAATAGGTATCTTG 59.341 40.741 0.00 0.00 0.00 3.02
1825 2122 7.202139 GGTCAGGATTTCAGGAATAGGTATCTT 60.202 40.741 0.00 0.00 0.00 2.40
1826 2123 6.271159 GGTCAGGATTTCAGGAATAGGTATCT 59.729 42.308 0.00 0.00 0.00 1.98
1827 2124 6.043243 TGGTCAGGATTTCAGGAATAGGTATC 59.957 42.308 0.00 0.00 0.00 2.24
1828 2125 5.911178 TGGTCAGGATTTCAGGAATAGGTAT 59.089 40.000 0.00 0.00 0.00 2.73
1829 2126 5.285401 TGGTCAGGATTTCAGGAATAGGTA 58.715 41.667 0.00 0.00 0.00 3.08
1830 2127 4.111577 TGGTCAGGATTTCAGGAATAGGT 58.888 43.478 0.00 0.00 0.00 3.08
1831 2128 4.778213 TGGTCAGGATTTCAGGAATAGG 57.222 45.455 0.00 0.00 0.00 2.57
1832 2129 5.587844 CACTTGGTCAGGATTTCAGGAATAG 59.412 44.000 0.00 0.00 0.00 1.73
1833 2130 5.014123 ACACTTGGTCAGGATTTCAGGAATA 59.986 40.000 0.00 0.00 0.00 1.75
1834 2131 4.202609 ACACTTGGTCAGGATTTCAGGAAT 60.203 41.667 0.00 0.00 0.00 3.01
1835 2132 3.138283 ACACTTGGTCAGGATTTCAGGAA 59.862 43.478 0.00 0.00 0.00 3.36
1836 2133 2.711009 ACACTTGGTCAGGATTTCAGGA 59.289 45.455 0.00 0.00 0.00 3.86
1837 2134 3.146104 ACACTTGGTCAGGATTTCAGG 57.854 47.619 0.00 0.00 0.00 3.86
1838 2135 5.284079 CAAAACACTTGGTCAGGATTTCAG 58.716 41.667 0.00 0.00 0.00 3.02
1839 2136 4.441356 GCAAAACACTTGGTCAGGATTTCA 60.441 41.667 0.00 0.00 0.00 2.69
1840 2137 4.051237 GCAAAACACTTGGTCAGGATTTC 58.949 43.478 0.00 0.00 0.00 2.17
1841 2138 3.706086 AGCAAAACACTTGGTCAGGATTT 59.294 39.130 0.00 0.00 0.00 2.17
1842 2139 3.068590 CAGCAAAACACTTGGTCAGGATT 59.931 43.478 0.00 0.00 0.00 3.01
1843 2140 2.624838 CAGCAAAACACTTGGTCAGGAT 59.375 45.455 0.00 0.00 0.00 3.24
1844 2141 2.023673 CAGCAAAACACTTGGTCAGGA 58.976 47.619 0.00 0.00 0.00 3.86
1845 2142 1.750778 ACAGCAAAACACTTGGTCAGG 59.249 47.619 0.00 0.00 0.00 3.86
1846 2143 2.164219 ACACAGCAAAACACTTGGTCAG 59.836 45.455 0.00 0.00 0.00 3.51
1847 2144 2.166829 ACACAGCAAAACACTTGGTCA 58.833 42.857 0.00 0.00 0.00 4.02
1848 2145 2.923020 CAACACAGCAAAACACTTGGTC 59.077 45.455 0.00 0.00 0.00 4.02
1849 2146 2.560542 TCAACACAGCAAAACACTTGGT 59.439 40.909 0.00 0.00 0.00 3.67
1850 2147 3.229276 TCAACACAGCAAAACACTTGG 57.771 42.857 0.00 0.00 0.00 3.61
1851 2148 5.005012 CAGATTCAACACAGCAAAACACTTG 59.995 40.000 0.00 0.00 0.00 3.16
1852 2149 5.104374 CAGATTCAACACAGCAAAACACTT 58.896 37.500 0.00 0.00 0.00 3.16
1853 2150 4.440525 CCAGATTCAACACAGCAAAACACT 60.441 41.667 0.00 0.00 0.00 3.55
1854 2151 3.798337 CCAGATTCAACACAGCAAAACAC 59.202 43.478 0.00 0.00 0.00 3.32
1855 2152 3.446873 ACCAGATTCAACACAGCAAAACA 59.553 39.130 0.00 0.00 0.00 2.83
1856 2153 4.045636 ACCAGATTCAACACAGCAAAAC 57.954 40.909 0.00 0.00 0.00 2.43
1857 2154 4.734398 AACCAGATTCAACACAGCAAAA 57.266 36.364 0.00 0.00 0.00 2.44
1858 2155 4.734398 AAACCAGATTCAACACAGCAAA 57.266 36.364 0.00 0.00 0.00 3.68
1859 2156 4.159321 TCAAAACCAGATTCAACACAGCAA 59.841 37.500 0.00 0.00 0.00 3.91
1860 2157 3.698539 TCAAAACCAGATTCAACACAGCA 59.301 39.130 0.00 0.00 0.00 4.41
1861 2158 4.305989 TCAAAACCAGATTCAACACAGC 57.694 40.909 0.00 0.00 0.00 4.40
1862 2159 7.775397 AAAATCAAAACCAGATTCAACACAG 57.225 32.000 0.00 0.00 34.78 3.66
1888 2185 9.490379 ACAGTAGAACAAATTAACCAGACTTAG 57.510 33.333 0.00 0.00 0.00 2.18
1926 2223 6.244999 CAGTAGAGCTATACGATCTAAAGCG 58.755 44.000 12.62 0.00 41.86 4.68
1967 2264 9.423061 GGTTCAATTGCATTTCAGTTATAACTT 57.577 29.630 15.60 0.00 37.08 2.66
1976 2273 6.548441 AACATTGGTTCAATTGCATTTCAG 57.452 33.333 0.00 0.00 31.05 3.02
2064 2361 9.599866 ACGAGTGATAATTATTCATTCAACTGA 57.400 29.630 0.00 0.00 0.00 3.41
2067 2364 8.947940 GCAACGAGTGATAATTATTCATTCAAC 58.052 33.333 0.00 0.00 0.00 3.18
2111 2408 4.661709 AGACCAAAACCTAACAGAAGGGTA 59.338 41.667 0.00 0.00 41.32 3.69
2123 2420 2.424793 TCCCCAGTAAGACCAAAACCT 58.575 47.619 0.00 0.00 0.00 3.50
2133 2430 7.651027 ATTTCAAGATTCATTCCCCAGTAAG 57.349 36.000 0.00 0.00 0.00 2.34
2181 2607 8.277713 CACCAACAATGAAACATTCAAGATTTC 58.722 33.333 0.00 0.00 43.95 2.17
2199 2625 8.783903 ACTAGATTATTTATACCCCACCAACAA 58.216 33.333 0.00 0.00 0.00 2.83
2307 2737 8.454106 AGTGCTTGATGTATTATTCAGAAACAC 58.546 33.333 0.00 0.00 0.00 3.32
2319 2749 1.005805 TGCCCCAGTGCTTGATGTATT 59.994 47.619 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.