Multiple sequence alignment - TraesCS2D01G391200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G391200 chr2D 100.000 3862 0 0 1 3862 498263320 498267181 0.000000e+00 7132.0
1 TraesCS2D01G391200 chr2D 96.552 928 25 4 1060 1983 610369865 610370789 0.000000e+00 1530.0
2 TraesCS2D01G391200 chr2D 96.455 931 26 4 1060 1983 647572385 647571455 0.000000e+00 1530.0
3 TraesCS2D01G391200 chr2D 90.074 675 53 5 42 703 194194590 194193917 0.000000e+00 863.0
4 TraesCS2D01G391200 chr2D 79.328 1340 177 55 1983 3245 498276207 498277523 0.000000e+00 848.0
5 TraesCS2D01G391200 chr2D 96.050 481 19 0 3382 3862 151987123 151986643 0.000000e+00 784.0
6 TraesCS2D01G391200 chr2D 95.000 480 24 0 3383 3862 577534788 577535267 0.000000e+00 754.0
7 TraesCS2D01G391200 chr2D 94.802 481 25 0 3382 3862 305946310 305945830 0.000000e+00 750.0
8 TraesCS2D01G391200 chr2D 83.453 834 103 21 1983 2796 498282273 498283091 0.000000e+00 743.0
9 TraesCS2D01G391200 chr2D 93.548 62 4 0 3242 3303 498277596 498277657 4.110000e-15 93.5
10 TraesCS2D01G391200 chr2B 91.480 1338 63 20 1983 3303 584818395 584819698 0.000000e+00 1792.0
11 TraesCS2D01G391200 chr2B 90.335 538 39 8 38 574 24213136 24213661 0.000000e+00 693.0
12 TraesCS2D01G391200 chr2B 81.206 846 115 26 1983 2796 584893603 584894436 3.250000e-180 641.0
13 TraesCS2D01G391200 chr2B 83.309 695 94 9 1983 2657 584873706 584874398 4.240000e-174 621.0
14 TraesCS2D01G391200 chr2B 92.571 350 11 6 719 1059 584818056 584818399 4.480000e-134 488.0
15 TraesCS2D01G391200 chr2B 76.700 691 88 44 2715 3378 584882429 584883073 2.240000e-82 316.0
16 TraesCS2D01G391200 chr2B 95.238 42 2 0 1 42 677962780 677962739 2.490000e-07 67.6
17 TraesCS2D01G391200 chr5D 97.087 927 22 3 1060 1983 44061891 44062815 0.000000e+00 1557.0
18 TraesCS2D01G391200 chr5D 96.567 932 24 3 1060 1983 45661549 45660618 0.000000e+00 1537.0
19 TraesCS2D01G391200 chr5D 89.412 680 57 4 38 703 542721242 542720564 0.000000e+00 843.0
20 TraesCS2D01G391200 chr5D 88.467 685 59 9 38 703 389701066 389700383 0.000000e+00 809.0
21 TraesCS2D01G391200 chr5D 91.906 556 28 10 38 577 428415776 428416330 0.000000e+00 761.0
22 TraesCS2D01G391200 chr5D 94.802 481 25 0 3382 3862 152740311 152739831 0.000000e+00 750.0
23 TraesCS2D01G391200 chr5D 94.802 481 24 1 3382 3862 481281884 481281405 0.000000e+00 749.0
24 TraesCS2D01G391200 chr5D 94.595 481 26 0 3382 3862 108111706 108112186 0.000000e+00 745.0
25 TraesCS2D01G391200 chr7D 96.861 924 28 1 1060 1983 524539554 524538632 0.000000e+00 1544.0
26 TraesCS2D01G391200 chr7D 96.555 929 25 4 1060 1982 236012316 236011389 0.000000e+00 1531.0
27 TraesCS2D01G391200 chr7D 90.280 679 53 2 38 703 568694342 568695020 0.000000e+00 876.0
28 TraesCS2D01G391200 chr7D 89.883 682 51 10 38 703 568653481 568654160 0.000000e+00 861.0
29 TraesCS2D01G391200 chr7D 95.560 473 21 0 3382 3854 421150100 421149628 0.000000e+00 758.0
30 TraesCS2D01G391200 chr7D 97.500 40 1 0 3 42 546108058 546108097 6.920000e-08 69.4
31 TraesCS2D01G391200 chr4D 96.663 929 25 3 1060 1983 479533415 479534342 0.000000e+00 1539.0
32 TraesCS2D01G391200 chr4D 90.616 682 45 6 38 703 420967526 420966848 0.000000e+00 887.0
33 TraesCS2D01G391200 chr4D 88.580 683 60 11 38 703 32247629 32248310 0.000000e+00 813.0
34 TraesCS2D01G391200 chr4D 87.555 683 62 10 38 703 195844933 195845609 0.000000e+00 769.0
35 TraesCS2D01G391200 chr4D 87.482 679 68 10 38 703 43414469 43413795 0.000000e+00 767.0
36 TraesCS2D01G391200 chr4D 91.682 541 29 4 42 567 486790433 486790972 0.000000e+00 736.0
37 TraesCS2D01G391200 chr4D 94.057 387 22 1 38 423 81327671 81327285 1.550000e-163 586.0
38 TraesCS2D01G391200 chr4D 93.798 387 23 1 38 423 386488946 386488560 7.190000e-162 580.0
39 TraesCS2D01G391200 chr4D 93.540 387 24 1 38 423 3506363 3506749 3.350000e-160 575.0
40 TraesCS2D01G391200 chr4D 93.282 387 25 1 38 423 477226985 477226599 1.560000e-158 569.0
41 TraesCS2D01G391200 chr4D 85.192 547 54 12 157 679 27400908 27400365 1.580000e-148 536.0
42 TraesCS2D01G391200 chrUn 96.656 927 27 2 1060 1982 112641726 112642652 0.000000e+00 1537.0
43 TraesCS2D01G391200 chrUn 87.353 680 65 6 43 703 87264518 87265195 0.000000e+00 760.0
44 TraesCS2D01G391200 chrUn 86.784 681 73 12 39 703 312601435 312602114 0.000000e+00 743.0
45 TraesCS2D01G391200 chrUn 88.625 589 51 9 38 610 29821240 29821828 0.000000e+00 702.0
46 TraesCS2D01G391200 chrUn 82.334 617 71 26 38 620 2120173 2120785 5.760000e-138 501.0
47 TraesCS2D01G391200 chrUn 90.365 384 33 3 38 420 292686440 292686820 5.760000e-138 501.0
48 TraesCS2D01G391200 chrUn 89.610 385 38 2 38 420 87099939 87100323 4.480000e-134 488.0
49 TraesCS2D01G391200 chrUn 89.610 385 38 2 38 420 353132826 353133210 4.480000e-134 488.0
50 TraesCS2D01G391200 chrUn 80.793 656 91 22 81 706 215037079 215036429 7.500000e-132 481.0
51 TraesCS2D01G391200 chrUn 94.182 275 15 1 38 311 36558256 36558530 5.970000e-113 418.0
52 TraesCS2D01G391200 chrUn 86.628 172 22 1 532 703 154950855 154950685 5.090000e-44 189.0
53 TraesCS2D01G391200 chrUn 86.628 172 22 1 532 703 155034912 155034742 5.090000e-44 189.0
54 TraesCS2D01G391200 chrUn 90.090 111 9 2 314 423 466989829 466989938 4.020000e-30 143.0
55 TraesCS2D01G391200 chr3D 96.440 927 26 5 1060 1983 302923004 302922082 0.000000e+00 1522.0
56 TraesCS2D01G391200 chr3D 92.586 553 28 2 38 577 597309628 597309076 0.000000e+00 782.0
57 TraesCS2D01G391200 chr3D 86.696 684 68 16 38 703 551623126 551623804 0.000000e+00 737.0
58 TraesCS2D01G391200 chr3D 81.753 833 119 19 1997 2799 540153253 540152424 0.000000e+00 665.0
59 TraesCS2D01G391200 chr3D 94.832 387 19 1 38 423 565262985 565262599 1.540000e-168 603.0
60 TraesCS2D01G391200 chr3D 81.241 677 100 15 1988 2657 540127686 540127030 4.420000e-144 521.0
61 TraesCS2D01G391200 chr3D 97.619 42 1 0 1 42 446355686 446355727 5.350000e-09 73.1
62 TraesCS2D01G391200 chr2A 80.246 1382 177 56 1983 3292 643007839 643009196 0.000000e+00 952.0
63 TraesCS2D01G391200 chr2A 89.237 734 51 17 2564 3293 642993973 642994682 0.000000e+00 893.0
64 TraesCS2D01G391200 chr2A 90.444 586 27 5 1983 2568 642991156 642991712 0.000000e+00 745.0
65 TraesCS2D01G391200 chr2A 90.631 523 31 9 38 545 768937131 768936612 0.000000e+00 678.0
66 TraesCS2D01G391200 chr2A 81.657 845 113 20 1983 2796 643016365 643017198 0.000000e+00 664.0
67 TraesCS2D01G391200 chr2A 80.183 328 33 10 755 1053 643007513 643007837 2.340000e-52 217.0
68 TraesCS2D01G391200 chr2A 86.802 197 18 5 3111 3303 535721968 535721776 3.020000e-51 213.0
69 TraesCS2D01G391200 chr2A 86.294 197 19 5 3111 3303 321560994 321561186 1.410000e-49 207.0
70 TraesCS2D01G391200 chr2A 91.525 118 7 2 945 1059 642991043 642991160 3.990000e-35 159.0
71 TraesCS2D01G391200 chr6D 91.753 679 43 6 38 703 143084751 143085429 0.000000e+00 931.0
72 TraesCS2D01G391200 chr6D 89.721 681 55 4 38 703 36576243 36576923 0.000000e+00 856.0
73 TraesCS2D01G391200 chr6D 94.602 389 19 2 38 424 300325288 300325676 5.520000e-168 601.0
74 TraesCS2D01G391200 chr6D 94.057 387 22 1 38 423 90926925 90927311 1.550000e-163 586.0
75 TraesCS2D01G391200 chr6D 93.798 387 23 1 38 423 10675187 10674801 7.190000e-162 580.0
76 TraesCS2D01G391200 chr6D 93.798 387 22 2 38 423 110655498 110655883 7.190000e-162 580.0
77 TraesCS2D01G391200 chr6D 84.642 293 39 5 416 703 345291737 345291446 1.760000e-73 287.0
78 TraesCS2D01G391200 chr6D 84.354 294 38 6 416 703 444086867 444087158 8.170000e-72 281.0
79 TraesCS2D01G391200 chr6D 84.247 292 39 5 416 703 417885276 417885564 1.060000e-70 278.0
80 TraesCS2D01G391200 chr6D 83.618 293 40 7 416 703 300325700 300325989 6.360000e-68 268.0
81 TraesCS2D01G391200 chr6D 97.619 42 1 0 1 42 36565607 36565648 5.350000e-09 73.1
82 TraesCS2D01G391200 chr7B 91.016 679 44 5 38 703 150527490 150526816 0.000000e+00 900.0
83 TraesCS2D01G391200 chr7B 97.619 42 0 1 1 42 88880880 88880920 1.920000e-08 71.3
84 TraesCS2D01G391200 chr6B 89.985 679 48 7 38 703 255668855 255668184 0.000000e+00 859.0
85 TraesCS2D01G391200 chr6B 88.042 669 63 11 49 703 184355351 184356016 0.000000e+00 776.0
86 TraesCS2D01G391200 chr5B 88.971 680 55 9 38 703 497211814 497212487 0.000000e+00 822.0
87 TraesCS2D01G391200 chr5B 86.538 676 75 11 42 703 532356487 532357160 0.000000e+00 730.0
88 TraesCS2D01G391200 chr5B 97.619 42 1 0 1 42 509680069 509680028 5.350000e-09 73.1
89 TraesCS2D01G391200 chr4B 88.791 678 60 7 38 701 27394485 27395160 0.000000e+00 817.0
90 TraesCS2D01G391200 chr4B 88.941 425 39 6 283 703 106768045 106768465 5.720000e-143 518.0
91 TraesCS2D01G391200 chr4B 95.918 49 2 0 3255 3303 38471098 38471050 3.200000e-11 80.5
92 TraesCS2D01G391200 chr4B 95.918 49 2 0 3255 3303 97315399 97315447 3.200000e-11 80.5
93 TraesCS2D01G391200 chr4B 94.231 52 2 1 3328 3378 97315452 97315503 1.150000e-10 78.7
94 TraesCS2D01G391200 chr4B 100.000 42 0 0 1 42 193542322 193542281 1.150000e-10 78.7
95 TraesCS2D01G391200 chr1D 87.427 684 64 14 38 703 423280446 423281125 0.000000e+00 767.0
96 TraesCS2D01G391200 chr1D 94.802 481 25 0 3382 3862 21798073 21798553 0.000000e+00 750.0
97 TraesCS2D01G391200 chr1D 94.595 481 26 0 3382 3862 326689701 326690181 0.000000e+00 745.0
98 TraesCS2D01G391200 chr1D 91.055 559 30 11 38 577 453551418 453551975 0.000000e+00 737.0
99 TraesCS2D01G391200 chr1D 94.832 387 18 2 38 423 7062343 7061958 1.540000e-168 603.0
100 TraesCS2D01G391200 chr1D 82.935 293 41 7 416 703 41444815 41445103 4.950000e-64 255.0
101 TraesCS2D01G391200 chr1D 94.872 39 2 0 4 42 377184818 377184780 1.160000e-05 62.1
102 TraesCS2D01G391200 chr1A 87.168 678 68 11 38 703 535551849 535551179 0.000000e+00 752.0
103 TraesCS2D01G391200 chr5A 87.404 651 68 11 43 684 647394251 647393606 0.000000e+00 736.0
104 TraesCS2D01G391200 chr5A 86.269 670 83 9 38 703 601701122 601701786 0.000000e+00 719.0
105 TraesCS2D01G391200 chr5A 86.124 627 52 12 38 647 128405997 128405389 0.000000e+00 643.0
106 TraesCS2D01G391200 chr5A 86.294 197 19 5 3111 3303 631550139 631550331 1.410000e-49 207.0
107 TraesCS2D01G391200 chr5A 84.772 197 22 6 3111 3303 420435847 420435655 1.420000e-44 191.0
108 TraesCS2D01G391200 chr4A 92.857 490 22 8 38 514 464760911 464760422 0.000000e+00 699.0
109 TraesCS2D01G391200 chr4A 86.294 197 19 5 3111 3303 583875448 583875640 1.410000e-49 207.0
110 TraesCS2D01G391200 chr7A 86.978 599 53 16 38 619 148172879 148172289 0.000000e+00 651.0
111 TraesCS2D01G391200 chr7A 84.500 200 22 6 3108 3303 498260924 498260730 5.090000e-44 189.0
112 TraesCS2D01G391200 chr3B 80.283 847 118 25 1988 2799 716296329 716295497 9.240000e-166 593.0
113 TraesCS2D01G391200 chr3B 88.819 474 40 7 243 703 76517253 76516780 1.560000e-158 569.0
114 TraesCS2D01G391200 chr3B 80.444 675 112 6 1988 2655 716241683 716241022 7.450000e-137 497.0
115 TraesCS2D01G391200 chr3A 82.328 696 95 20 1988 2657 675154254 675153561 2.590000e-161 579.0
116 TraesCS2D01G391200 chr3A 86.294 197 19 5 3111 3303 229405676 229405484 1.410000e-49 207.0
117 TraesCS2D01G391200 chr1B 97.619 42 1 0 1 42 26588270 26588311 5.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G391200 chr2D 498263320 498267181 3861 False 7132.00 7132 100.0000 1 3862 1 chr2D.!!$F1 3861
1 TraesCS2D01G391200 chr2D 610369865 610370789 924 False 1530.00 1530 96.5520 1060 1983 1 chr2D.!!$F4 923
2 TraesCS2D01G391200 chr2D 647571455 647572385 930 True 1530.00 1530 96.4550 1060 1983 1 chr2D.!!$R4 923
3 TraesCS2D01G391200 chr2D 194193917 194194590 673 True 863.00 863 90.0740 42 703 1 chr2D.!!$R2 661
4 TraesCS2D01G391200 chr2D 498282273 498283091 818 False 743.00 743 83.4530 1983 2796 1 chr2D.!!$F2 813
5 TraesCS2D01G391200 chr2D 498276207 498277657 1450 False 470.75 848 86.4380 1983 3303 2 chr2D.!!$F5 1320
6 TraesCS2D01G391200 chr2B 584818056 584819698 1642 False 1140.00 1792 92.0255 719 3303 2 chr2B.!!$F5 2584
7 TraesCS2D01G391200 chr2B 24213136 24213661 525 False 693.00 693 90.3350 38 574 1 chr2B.!!$F1 536
8 TraesCS2D01G391200 chr2B 584893603 584894436 833 False 641.00 641 81.2060 1983 2796 1 chr2B.!!$F4 813
9 TraesCS2D01G391200 chr2B 584873706 584874398 692 False 621.00 621 83.3090 1983 2657 1 chr2B.!!$F2 674
10 TraesCS2D01G391200 chr2B 584882429 584883073 644 False 316.00 316 76.7000 2715 3378 1 chr2B.!!$F3 663
11 TraesCS2D01G391200 chr5D 44061891 44062815 924 False 1557.00 1557 97.0870 1060 1983 1 chr5D.!!$F1 923
12 TraesCS2D01G391200 chr5D 45660618 45661549 931 True 1537.00 1537 96.5670 1060 1983 1 chr5D.!!$R1 923
13 TraesCS2D01G391200 chr5D 542720564 542721242 678 True 843.00 843 89.4120 38 703 1 chr5D.!!$R5 665
14 TraesCS2D01G391200 chr5D 389700383 389701066 683 True 809.00 809 88.4670 38 703 1 chr5D.!!$R3 665
15 TraesCS2D01G391200 chr5D 428415776 428416330 554 False 761.00 761 91.9060 38 577 1 chr5D.!!$F3 539
16 TraesCS2D01G391200 chr7D 524538632 524539554 922 True 1544.00 1544 96.8610 1060 1983 1 chr7D.!!$R3 923
17 TraesCS2D01G391200 chr7D 236011389 236012316 927 True 1531.00 1531 96.5550 1060 1982 1 chr7D.!!$R1 922
18 TraesCS2D01G391200 chr7D 568694342 568695020 678 False 876.00 876 90.2800 38 703 1 chr7D.!!$F3 665
19 TraesCS2D01G391200 chr7D 568653481 568654160 679 False 861.00 861 89.8830 38 703 1 chr7D.!!$F2 665
20 TraesCS2D01G391200 chr4D 479533415 479534342 927 False 1539.00 1539 96.6630 1060 1983 1 chr4D.!!$F4 923
21 TraesCS2D01G391200 chr4D 420966848 420967526 678 True 887.00 887 90.6160 38 703 1 chr4D.!!$R5 665
22 TraesCS2D01G391200 chr4D 32247629 32248310 681 False 813.00 813 88.5800 38 703 1 chr4D.!!$F2 665
23 TraesCS2D01G391200 chr4D 195844933 195845609 676 False 769.00 769 87.5550 38 703 1 chr4D.!!$F3 665
24 TraesCS2D01G391200 chr4D 43413795 43414469 674 True 767.00 767 87.4820 38 703 1 chr4D.!!$R2 665
25 TraesCS2D01G391200 chr4D 486790433 486790972 539 False 736.00 736 91.6820 42 567 1 chr4D.!!$F5 525
26 TraesCS2D01G391200 chr4D 27400365 27400908 543 True 536.00 536 85.1920 157 679 1 chr4D.!!$R1 522
27 TraesCS2D01G391200 chrUn 112641726 112642652 926 False 1537.00 1537 96.6560 1060 1982 1 chrUn.!!$F6 922
28 TraesCS2D01G391200 chrUn 87264518 87265195 677 False 760.00 760 87.3530 43 703 1 chrUn.!!$F5 660
29 TraesCS2D01G391200 chrUn 312601435 312602114 679 False 743.00 743 86.7840 39 703 1 chrUn.!!$F8 664
30 TraesCS2D01G391200 chrUn 29821240 29821828 588 False 702.00 702 88.6250 38 610 1 chrUn.!!$F2 572
31 TraesCS2D01G391200 chrUn 2120173 2120785 612 False 501.00 501 82.3340 38 620 1 chrUn.!!$F1 582
32 TraesCS2D01G391200 chrUn 215036429 215037079 650 True 481.00 481 80.7930 81 706 1 chrUn.!!$R3 625
33 TraesCS2D01G391200 chr3D 302922082 302923004 922 True 1522.00 1522 96.4400 1060 1983 1 chr3D.!!$R1 923
34 TraesCS2D01G391200 chr3D 597309076 597309628 552 True 782.00 782 92.5860 38 577 1 chr3D.!!$R5 539
35 TraesCS2D01G391200 chr3D 551623126 551623804 678 False 737.00 737 86.6960 38 703 1 chr3D.!!$F2 665
36 TraesCS2D01G391200 chr3D 540152424 540153253 829 True 665.00 665 81.7530 1997 2799 1 chr3D.!!$R3 802
37 TraesCS2D01G391200 chr3D 540127030 540127686 656 True 521.00 521 81.2410 1988 2657 1 chr3D.!!$R2 669
38 TraesCS2D01G391200 chr2A 768936612 768937131 519 True 678.00 678 90.6310 38 545 1 chr2A.!!$R2 507
39 TraesCS2D01G391200 chr2A 643016365 643017198 833 False 664.00 664 81.6570 1983 2796 1 chr2A.!!$F2 813
40 TraesCS2D01G391200 chr2A 642991043 642994682 3639 False 599.00 893 90.4020 945 3293 3 chr2A.!!$F3 2348
41 TraesCS2D01G391200 chr2A 643007513 643009196 1683 False 584.50 952 80.2145 755 3292 2 chr2A.!!$F4 2537
42 TraesCS2D01G391200 chr6D 143084751 143085429 678 False 931.00 931 91.7530 38 703 1 chr6D.!!$F5 665
43 TraesCS2D01G391200 chr6D 36576243 36576923 680 False 856.00 856 89.7210 38 703 1 chr6D.!!$F2 665
44 TraesCS2D01G391200 chr6D 300325288 300325989 701 False 434.50 601 89.1100 38 703 2 chr6D.!!$F8 665
45 TraesCS2D01G391200 chr7B 150526816 150527490 674 True 900.00 900 91.0160 38 703 1 chr7B.!!$R1 665
46 TraesCS2D01G391200 chr6B 255668184 255668855 671 True 859.00 859 89.9850 38 703 1 chr6B.!!$R1 665
47 TraesCS2D01G391200 chr6B 184355351 184356016 665 False 776.00 776 88.0420 49 703 1 chr6B.!!$F1 654
48 TraesCS2D01G391200 chr5B 497211814 497212487 673 False 822.00 822 88.9710 38 703 1 chr5B.!!$F1 665
49 TraesCS2D01G391200 chr5B 532356487 532357160 673 False 730.00 730 86.5380 42 703 1 chr5B.!!$F2 661
50 TraesCS2D01G391200 chr4B 27394485 27395160 675 False 817.00 817 88.7910 38 701 1 chr4B.!!$F1 663
51 TraesCS2D01G391200 chr1D 423280446 423281125 679 False 767.00 767 87.4270 38 703 1 chr1D.!!$F4 665
52 TraesCS2D01G391200 chr1D 453551418 453551975 557 False 737.00 737 91.0550 38 577 1 chr1D.!!$F5 539
53 TraesCS2D01G391200 chr1A 535551179 535551849 670 True 752.00 752 87.1680 38 703 1 chr1A.!!$R1 665
54 TraesCS2D01G391200 chr5A 647393606 647394251 645 True 736.00 736 87.4040 43 684 1 chr5A.!!$R3 641
55 TraesCS2D01G391200 chr5A 601701122 601701786 664 False 719.00 719 86.2690 38 703 1 chr5A.!!$F1 665
56 TraesCS2D01G391200 chr5A 128405389 128405997 608 True 643.00 643 86.1240 38 647 1 chr5A.!!$R1 609
57 TraesCS2D01G391200 chr7A 148172289 148172879 590 True 651.00 651 86.9780 38 619 1 chr7A.!!$R1 581
58 TraesCS2D01G391200 chr3B 716295497 716296329 832 True 593.00 593 80.2830 1988 2799 1 chr3B.!!$R3 811
59 TraesCS2D01G391200 chr3B 716241022 716241683 661 True 497.00 497 80.4440 1988 2655 1 chr3B.!!$R2 667
60 TraesCS2D01G391200 chr3A 675153561 675154254 693 True 579.00 579 82.3280 1988 2657 1 chr3A.!!$R2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 870 0.392461 GGTGGCGGTTGAAGATGCTA 60.392 55.0 0.00 0.0 0.00 3.49 F
993 1192 0.465642 CTACCTTCCCGGATTTGCCC 60.466 60.0 0.73 0.0 36.31 5.36 F
2020 2240 0.830444 TCGTGACAAGGTGCTACCCT 60.830 55.0 2.18 0.0 39.75 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 2797 0.322648 CATCACTCAGGCACAGGTCA 59.677 55.0 0.00 0.0 0.0 4.02 R
2839 5444 0.179045 ATTCCCGGCCTTTCTCATCG 60.179 55.0 0.00 0.0 0.0 3.84 R
3599 6349 0.036022 GCAGAGAGTGGCCTTGAACT 59.964 55.0 3.32 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.659986 TCTCCCTCTAGTCACCGC 57.340 61.111 0.00 0.00 0.00 5.68
18 19 1.076923 TCTCCCTCTAGTCACCGCC 60.077 63.158 0.00 0.00 0.00 6.13
19 20 2.439701 TCCCTCTAGTCACCGCCG 60.440 66.667 0.00 0.00 0.00 6.46
20 21 4.208686 CCCTCTAGTCACCGCCGC 62.209 72.222 0.00 0.00 0.00 6.53
21 22 4.208686 CCTCTAGTCACCGCCGCC 62.209 72.222 0.00 0.00 0.00 6.13
22 23 4.208686 CTCTAGTCACCGCCGCCC 62.209 72.222 0.00 0.00 0.00 6.13
281 298 1.002011 GTGGAGGGCTGAAAGGGTC 60.002 63.158 0.00 0.00 0.00 4.46
522 601 2.951642 TCTTCTTGCTTGTGTTTGGAGG 59.048 45.455 0.00 0.00 0.00 4.30
605 771 1.716760 CGCTAAATTTACCGCGGCA 59.283 52.632 28.58 10.63 41.72 5.69
703 870 0.392461 GGTGGCGGTTGAAGATGCTA 60.392 55.000 0.00 0.00 0.00 3.49
706 873 0.947244 GGCGGTTGAAGATGCTATGG 59.053 55.000 0.00 0.00 0.00 2.74
707 874 0.947244 GCGGTTGAAGATGCTATGGG 59.053 55.000 0.00 0.00 0.00 4.00
708 875 1.597742 CGGTTGAAGATGCTATGGGG 58.402 55.000 0.00 0.00 0.00 4.96
709 876 1.322442 GGTTGAAGATGCTATGGGGC 58.678 55.000 0.00 0.00 0.00 5.80
710 877 1.410083 GGTTGAAGATGCTATGGGGCA 60.410 52.381 0.00 0.00 46.63 5.36
711 878 2.378038 GTTGAAGATGCTATGGGGCAA 58.622 47.619 0.00 0.00 45.68 4.52
712 879 2.760092 GTTGAAGATGCTATGGGGCAAA 59.240 45.455 0.00 0.00 45.68 3.68
713 880 3.098774 TGAAGATGCTATGGGGCAAAA 57.901 42.857 0.00 0.00 45.68 2.44
714 881 2.760092 TGAAGATGCTATGGGGCAAAAC 59.240 45.455 0.00 0.00 45.68 2.43
715 882 1.780503 AGATGCTATGGGGCAAAACC 58.219 50.000 0.00 0.00 45.68 3.27
716 883 1.006998 AGATGCTATGGGGCAAAACCA 59.993 47.619 0.00 0.00 45.68 3.67
734 901 1.009829 CATGCAGAGCCCGTTCTTAC 58.990 55.000 0.00 0.00 0.00 2.34
735 902 0.905357 ATGCAGAGCCCGTTCTTACT 59.095 50.000 0.00 0.00 0.00 2.24
736 903 1.552578 TGCAGAGCCCGTTCTTACTA 58.447 50.000 0.00 0.00 0.00 1.82
817 988 0.903942 GGAATGGCCATGCAGGAAAA 59.096 50.000 25.70 0.00 41.22 2.29
853 1024 0.589729 CTTTCCAAATCGATGCCGCG 60.590 55.000 0.00 0.00 35.37 6.46
854 1025 1.987704 TTTCCAAATCGATGCCGCGG 61.988 55.000 24.05 24.05 35.37 6.46
987 1186 0.981277 CCACCACTACCTTCCCGGAT 60.981 60.000 0.73 0.00 36.31 4.18
993 1192 0.465642 CTACCTTCCCGGATTTGCCC 60.466 60.000 0.73 0.00 36.31 5.36
1003 1202 1.792115 GGATTTGCCCATTCCCATGA 58.208 50.000 0.00 0.00 31.07 3.07
1057 1259 3.794270 CCATGACGGCGGTTACTG 58.206 61.111 13.24 0.89 0.00 2.74
1058 1260 1.813753 CCATGACGGCGGTTACTGG 60.814 63.158 13.24 6.85 0.00 4.00
1206 1409 3.257627 TGGGTTCTCTCCACCACTT 57.742 52.632 0.00 0.00 35.80 3.16
1232 1435 3.038280 TGGTGTGTGAGAAGAGAAAGGA 58.962 45.455 0.00 0.00 0.00 3.36
1243 1446 5.261216 AGAAGAGAAAGGAAAAACCACACA 58.739 37.500 0.00 0.00 42.04 3.72
1247 1450 1.470051 AAGGAAAAACCACACACGCT 58.530 45.000 0.00 0.00 42.04 5.07
1255 1458 4.374702 CACACACGCTCGCTTGCC 62.375 66.667 0.00 0.00 0.00 4.52
1256 1459 4.609018 ACACACGCTCGCTTGCCT 62.609 61.111 0.00 0.00 0.00 4.75
1257 1460 3.782244 CACACGCTCGCTTGCCTC 61.782 66.667 0.00 0.00 0.00 4.70
1450 1669 1.444895 GGTCGCGACACAATACCGT 60.445 57.895 37.26 0.00 0.00 4.83
2020 2240 0.830444 TCGTGACAAGGTGCTACCCT 60.830 55.000 2.18 0.00 39.75 4.34
2388 2654 1.429463 GACGTGCTGTACTTCTTGGG 58.571 55.000 0.00 0.00 0.00 4.12
2557 2833 2.435586 GCGGTGCTGCAGATGACT 60.436 61.111 20.43 0.00 34.15 3.41
2633 5177 1.513158 CCAGACTGCTACCTCCGTG 59.487 63.158 0.00 0.00 0.00 4.94
2703 5284 1.040339 GGCCGGTAAATTCCATGGCA 61.040 55.000 6.96 0.00 44.21 4.92
2706 5287 2.158971 GCCGGTAAATTCCATGGCAATT 60.159 45.455 6.96 11.14 42.03 2.32
2707 5288 3.716601 CCGGTAAATTCCATGGCAATTC 58.283 45.455 6.96 3.86 0.00 2.17
2708 5289 3.492482 CCGGTAAATTCCATGGCAATTCC 60.492 47.826 6.96 10.89 0.00 3.01
2709 5290 3.716601 GGTAAATTCCATGGCAATTCCG 58.283 45.455 6.96 0.00 37.80 4.30
2826 5431 1.659954 CTCGCGCTGGTAGCTCATC 60.660 63.158 5.56 0.00 39.60 2.92
2839 5444 1.524165 CTCATCTCTGCAGCCTGGC 60.524 63.158 11.65 11.65 0.00 4.85
2904 5535 2.987413 TGTACGGTGTACCTACGTTG 57.013 50.000 10.99 0.00 41.53 4.10
2927 5559 3.304123 CCGCCTCGTTGTTGATAAAACAA 60.304 43.478 0.00 0.00 37.76 2.83
3099 5764 3.139077 GCCAGCGCCATTTTACTACTAT 58.861 45.455 2.29 0.00 0.00 2.12
3206 5878 4.631813 ACTAATCTTCTTCGTGATTGTGGC 59.368 41.667 0.00 0.00 35.01 5.01
3210 5882 3.367051 CTTCGTGATTGTGGCGCGG 62.367 63.158 8.83 0.00 39.51 6.46
3211 5883 3.867700 TTCGTGATTGTGGCGCGGA 62.868 57.895 8.83 0.00 39.51 5.54
3213 5885 2.742372 GTGATTGTGGCGCGGACT 60.742 61.111 8.83 0.00 0.00 3.85
3214 5886 2.031919 TGATTGTGGCGCGGACTT 59.968 55.556 8.83 0.00 0.00 3.01
3215 5887 1.017177 GTGATTGTGGCGCGGACTTA 61.017 55.000 8.83 0.00 0.00 2.24
3216 5888 0.107897 TGATTGTGGCGCGGACTTAT 60.108 50.000 8.83 0.00 0.00 1.73
3217 5889 0.304705 GATTGTGGCGCGGACTTATG 59.695 55.000 8.83 0.00 0.00 1.90
3245 5994 1.801771 CGCGGACTTATGTGTGGAAAA 59.198 47.619 0.00 0.00 0.00 2.29
3247 5996 3.666902 CGCGGACTTATGTGTGGAAAAAG 60.667 47.826 0.00 0.00 0.00 2.27
3253 6002 5.783111 ACTTATGTGTGGAAAAAGAATGCC 58.217 37.500 0.00 0.00 0.00 4.40
3303 6052 3.129462 TGATCTCTTCTCTGTAGTTGCCG 59.871 47.826 0.00 0.00 0.00 5.69
3305 6054 2.750166 TCTCTTCTCTGTAGTTGCCGAG 59.250 50.000 0.00 0.00 0.00 4.63
3306 6055 2.490115 CTCTTCTCTGTAGTTGCCGAGT 59.510 50.000 0.00 0.00 0.00 4.18
3307 6056 3.682696 TCTTCTCTGTAGTTGCCGAGTA 58.317 45.455 0.00 0.00 0.00 2.59
3308 6057 3.690139 TCTTCTCTGTAGTTGCCGAGTAG 59.310 47.826 0.00 0.00 0.00 2.57
3309 6058 3.069079 TCTCTGTAGTTGCCGAGTAGT 57.931 47.619 0.00 0.00 0.00 2.73
3310 6059 3.418995 TCTCTGTAGTTGCCGAGTAGTT 58.581 45.455 0.00 0.00 0.00 2.24
3311 6060 3.825014 TCTCTGTAGTTGCCGAGTAGTTT 59.175 43.478 0.00 0.00 0.00 2.66
3312 6061 4.280174 TCTCTGTAGTTGCCGAGTAGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
3313 6062 4.952460 TCTGTAGTTGCCGAGTAGTTTTT 58.048 39.130 0.00 0.00 0.00 1.94
3314 6063 6.016024 TCTCTGTAGTTGCCGAGTAGTTTTTA 60.016 38.462 0.00 0.00 0.00 1.52
3315 6064 6.514947 TCTGTAGTTGCCGAGTAGTTTTTAA 58.485 36.000 0.00 0.00 0.00 1.52
3316 6065 6.643770 TCTGTAGTTGCCGAGTAGTTTTTAAG 59.356 38.462 0.00 0.00 0.00 1.85
3317 6066 6.514947 TGTAGTTGCCGAGTAGTTTTTAAGA 58.485 36.000 0.00 0.00 0.00 2.10
3318 6067 6.985645 TGTAGTTGCCGAGTAGTTTTTAAGAA 59.014 34.615 0.00 0.00 0.00 2.52
3319 6068 6.296365 AGTTGCCGAGTAGTTTTTAAGAAC 57.704 37.500 0.65 0.65 0.00 3.01
3320 6069 6.053650 AGTTGCCGAGTAGTTTTTAAGAACT 58.946 36.000 15.02 15.02 42.27 3.01
3321 6070 6.541278 AGTTGCCGAGTAGTTTTTAAGAACTT 59.459 34.615 15.76 0.09 40.24 2.66
3322 6071 7.712205 AGTTGCCGAGTAGTTTTTAAGAACTTA 59.288 33.333 15.76 1.42 40.24 2.24
3323 6072 8.501580 GTTGCCGAGTAGTTTTTAAGAACTTAT 58.498 33.333 15.76 6.07 40.24 1.73
3324 6073 8.248117 TGCCGAGTAGTTTTTAAGAACTTATC 57.752 34.615 15.76 12.68 40.24 1.75
3325 6074 8.092687 TGCCGAGTAGTTTTTAAGAACTTATCT 58.907 33.333 15.76 11.85 40.24 1.98
3326 6075 8.381387 GCCGAGTAGTTTTTAAGAACTTATCTG 58.619 37.037 15.76 11.42 40.24 2.90
3401 6151 4.241555 GTGGCCGGCGATCTGGAT 62.242 66.667 22.54 0.00 41.45 3.41
3402 6152 4.240103 TGGCCGGCGATCTGGATG 62.240 66.667 22.54 0.00 41.45 3.51
3403 6153 4.241555 GGCCGGCGATCTGGATGT 62.242 66.667 22.54 0.00 41.45 3.06
3404 6154 2.969238 GCCGGCGATCTGGATGTG 60.969 66.667 12.58 0.00 41.45 3.21
3405 6155 2.280389 CCGGCGATCTGGATGTGG 60.280 66.667 9.30 0.00 41.45 4.17
3406 6156 2.501128 CGGCGATCTGGATGTGGT 59.499 61.111 0.00 0.00 0.00 4.16
3407 6157 1.884464 CGGCGATCTGGATGTGGTG 60.884 63.158 0.00 0.00 0.00 4.17
3408 6158 1.524621 GGCGATCTGGATGTGGTGG 60.525 63.158 0.00 0.00 0.00 4.61
3409 6159 1.221840 GCGATCTGGATGTGGTGGT 59.778 57.895 0.00 0.00 0.00 4.16
3410 6160 1.091771 GCGATCTGGATGTGGTGGTG 61.092 60.000 0.00 0.00 0.00 4.17
3411 6161 1.091771 CGATCTGGATGTGGTGGTGC 61.092 60.000 0.00 0.00 0.00 5.01
3412 6162 0.749454 GATCTGGATGTGGTGGTGCC 60.749 60.000 0.00 0.00 37.90 5.01
3413 6163 2.541547 ATCTGGATGTGGTGGTGCCG 62.542 60.000 0.00 0.00 41.21 5.69
3414 6164 4.343323 TGGATGTGGTGGTGCCGG 62.343 66.667 0.00 0.00 41.21 6.13
3432 6182 2.960659 CGGCTCGCTGATCTGCTG 60.961 66.667 20.58 14.38 0.00 4.41
3433 6183 2.588314 GGCTCGCTGATCTGCTGG 60.588 66.667 20.58 13.98 0.00 4.85
3434 6184 2.186384 GCTCGCTGATCTGCTGGT 59.814 61.111 20.58 0.00 0.00 4.00
3435 6185 2.172372 GCTCGCTGATCTGCTGGTG 61.172 63.158 20.58 9.36 0.00 4.17
3436 6186 2.125391 TCGCTGATCTGCTGGTGC 60.125 61.111 20.58 1.36 40.20 5.01
3437 6187 2.125229 CGCTGATCTGCTGGTGCT 60.125 61.111 20.58 0.00 40.48 4.40
3438 6188 2.172372 CGCTGATCTGCTGGTGCTC 61.172 63.158 20.58 0.00 40.48 4.26
3439 6189 1.818785 GCTGATCTGCTGGTGCTCC 60.819 63.158 16.60 0.00 40.48 4.70
3440 6190 1.600638 CTGATCTGCTGGTGCTCCA 59.399 57.895 7.39 7.39 42.05 3.86
3448 6198 3.160585 TGGTGCTCCAGGGTTCTG 58.839 61.111 2.64 0.00 39.03 3.02
3449 6199 2.360475 GGTGCTCCAGGGTTCTGC 60.360 66.667 0.00 0.00 39.61 4.26
3450 6200 2.360475 GTGCTCCAGGGTTCTGCC 60.360 66.667 0.00 0.00 39.61 4.85
3451 6201 2.530151 TGCTCCAGGGTTCTGCCT 60.530 61.111 0.00 0.00 39.61 4.75
3452 6202 2.045536 GCTCCAGGGTTCTGCCTG 60.046 66.667 0.00 0.00 39.61 4.85
3455 6205 2.034687 CCAGGGTTCTGCCTGGTG 59.965 66.667 0.41 0.00 46.01 4.17
3456 6206 2.034687 CAGGGTTCTGCCTGGTGG 59.965 66.667 0.00 0.00 37.43 4.61
3457 6207 2.450502 AGGGTTCTGCCTGGTGGT 60.451 61.111 0.00 0.00 37.43 4.16
3458 6208 2.282462 GGGTTCTGCCTGGTGGTG 60.282 66.667 0.00 0.00 37.43 4.17
3459 6209 2.985847 GGTTCTGCCTGGTGGTGC 60.986 66.667 0.00 0.00 35.27 5.01
3460 6210 2.113986 GTTCTGCCTGGTGGTGCT 59.886 61.111 0.00 0.00 35.27 4.40
3461 6211 2.113774 TTCTGCCTGGTGGTGCTG 59.886 61.111 0.00 0.00 35.27 4.41
3462 6212 3.496309 TTCTGCCTGGTGGTGCTGG 62.496 63.158 0.00 0.00 35.27 4.85
3463 6213 4.275508 CTGCCTGGTGGTGCTGGT 62.276 66.667 0.00 0.00 35.27 4.00
3464 6214 4.584518 TGCCTGGTGGTGCTGGTG 62.585 66.667 0.00 0.00 35.27 4.17
3466 6216 3.889692 CCTGGTGGTGCTGGTGGT 61.890 66.667 0.00 0.00 0.00 4.16
3467 6217 2.595463 CTGGTGGTGCTGGTGGTG 60.595 66.667 0.00 0.00 0.00 4.17
3468 6218 3.093172 TGGTGGTGCTGGTGGTGA 61.093 61.111 0.00 0.00 0.00 4.02
3469 6219 2.416107 CTGGTGGTGCTGGTGGTGAT 62.416 60.000 0.00 0.00 0.00 3.06
3470 6220 1.973281 GGTGGTGCTGGTGGTGATG 60.973 63.158 0.00 0.00 0.00 3.07
3471 6221 1.973281 GTGGTGCTGGTGGTGATGG 60.973 63.158 0.00 0.00 0.00 3.51
3472 6222 3.064324 GGTGCTGGTGGTGATGGC 61.064 66.667 0.00 0.00 0.00 4.40
3473 6223 3.434319 GTGCTGGTGGTGATGGCG 61.434 66.667 0.00 0.00 0.00 5.69
3474 6224 4.720902 TGCTGGTGGTGATGGCGG 62.721 66.667 0.00 0.00 0.00 6.13
3479 6229 4.722700 GTGGTGATGGCGGCCTGT 62.723 66.667 21.46 8.98 0.00 4.00
3480 6230 4.720902 TGGTGATGGCGGCCTGTG 62.721 66.667 21.46 0.00 0.00 3.66
3490 6240 2.031163 GGCCTGTGCACGAGAGTT 59.969 61.111 13.13 0.00 46.40 3.01
3491 6241 2.320587 GGCCTGTGCACGAGAGTTG 61.321 63.158 13.13 0.00 46.40 3.16
3492 6242 2.320587 GCCTGTGCACGAGAGTTGG 61.321 63.158 13.13 6.51 46.40 3.77
3493 6243 1.367471 CCTGTGCACGAGAGTTGGA 59.633 57.895 13.13 0.00 46.40 3.53
3494 6244 0.036952 CCTGTGCACGAGAGTTGGAT 60.037 55.000 13.13 0.00 46.40 3.41
3495 6245 1.354040 CTGTGCACGAGAGTTGGATC 58.646 55.000 13.13 0.00 46.40 3.36
3496 6246 0.037326 TGTGCACGAGAGTTGGATCC 60.037 55.000 13.13 4.20 46.40 3.36
3497 6247 0.037326 GTGCACGAGAGTTGGATCCA 60.037 55.000 11.44 11.44 46.40 3.41
3498 6248 0.904649 TGCACGAGAGTTGGATCCAT 59.095 50.000 17.06 0.06 46.40 3.41
3499 6249 1.278985 TGCACGAGAGTTGGATCCATT 59.721 47.619 17.06 7.17 46.40 3.16
3500 6250 1.936547 GCACGAGAGTTGGATCCATTC 59.063 52.381 17.06 16.16 46.40 2.67
3501 6251 2.196749 CACGAGAGTTGGATCCATTCG 58.803 52.381 24.70 24.70 46.40 3.34
3502 6252 2.100197 ACGAGAGTTGGATCCATTCGA 58.900 47.619 29.35 11.49 46.40 3.71
3503 6253 2.496070 ACGAGAGTTGGATCCATTCGAA 59.504 45.455 29.35 11.17 46.40 3.71
3504 6254 2.860735 CGAGAGTTGGATCCATTCGAAC 59.139 50.000 23.25 15.95 41.80 3.95
3509 6259 4.802876 GTTGGATCCATTCGAACTGATC 57.197 45.455 17.06 21.87 39.29 2.92
3510 6260 4.446371 GTTGGATCCATTCGAACTGATCT 58.554 43.478 25.80 5.51 39.29 2.75
3511 6261 4.063998 TGGATCCATTCGAACTGATCTG 57.936 45.455 25.80 11.41 35.18 2.90
3512 6262 3.181462 TGGATCCATTCGAACTGATCTGG 60.181 47.826 25.80 18.15 35.18 3.86
3513 6263 2.988010 TCCATTCGAACTGATCTGGG 57.012 50.000 12.13 0.48 32.96 4.45
3514 6264 2.187958 TCCATTCGAACTGATCTGGGT 58.812 47.619 12.13 0.00 32.96 4.51
3515 6265 2.093500 TCCATTCGAACTGATCTGGGTG 60.093 50.000 12.13 0.00 32.96 4.61
3516 6266 2.093500 CCATTCGAACTGATCTGGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
3517 6267 3.599343 CATTCGAACTGATCTGGGTGAA 58.401 45.455 0.00 5.13 0.00 3.18
3518 6268 3.762407 TTCGAACTGATCTGGGTGAAA 57.238 42.857 4.49 0.00 0.00 2.69
3519 6269 3.762407 TCGAACTGATCTGGGTGAAAA 57.238 42.857 4.49 0.00 0.00 2.29
3520 6270 3.399330 TCGAACTGATCTGGGTGAAAAC 58.601 45.455 4.49 0.00 0.00 2.43
3521 6271 3.071023 TCGAACTGATCTGGGTGAAAACT 59.929 43.478 4.49 0.00 0.00 2.66
3522 6272 3.815401 CGAACTGATCTGGGTGAAAACTT 59.185 43.478 4.49 0.00 0.00 2.66
3523 6273 4.319766 CGAACTGATCTGGGTGAAAACTTG 60.320 45.833 4.49 0.00 0.00 3.16
3524 6274 2.887152 ACTGATCTGGGTGAAAACTTGC 59.113 45.455 4.49 0.00 0.00 4.01
3525 6275 2.229784 CTGATCTGGGTGAAAACTTGCC 59.770 50.000 0.00 0.00 0.00 4.52
3526 6276 2.158475 TGATCTGGGTGAAAACTTGCCT 60.158 45.455 0.00 0.00 0.00 4.75
3527 6277 2.452600 TCTGGGTGAAAACTTGCCTT 57.547 45.000 0.00 0.00 0.00 4.35
3528 6278 2.306847 TCTGGGTGAAAACTTGCCTTC 58.693 47.619 0.00 0.00 0.00 3.46
3529 6279 1.001378 CTGGGTGAAAACTTGCCTTCG 60.001 52.381 0.00 0.00 0.00 3.79
3530 6280 0.313987 GGGTGAAAACTTGCCTTCGG 59.686 55.000 0.00 0.00 0.00 4.30
3540 6290 2.125673 GCCTTCGGCGTCTGCTAA 60.126 61.111 6.85 0.00 39.62 3.09
3541 6291 2.167861 GCCTTCGGCGTCTGCTAAG 61.168 63.158 6.85 1.34 39.62 2.18
3542 6292 1.519455 CCTTCGGCGTCTGCTAAGG 60.519 63.158 6.85 7.65 43.10 2.69
3543 6293 2.125673 TTCGGCGTCTGCTAAGGC 60.126 61.111 6.85 0.00 42.25 4.35
3544 6294 3.659089 TTCGGCGTCTGCTAAGGCC 62.659 63.158 6.85 11.20 44.79 5.19
3577 6327 3.391227 GCTATCTGCGTTGTTTCCTTC 57.609 47.619 0.00 0.00 0.00 3.46
3578 6328 3.003480 GCTATCTGCGTTGTTTCCTTCT 58.997 45.455 0.00 0.00 0.00 2.85
3579 6329 3.437049 GCTATCTGCGTTGTTTCCTTCTT 59.563 43.478 0.00 0.00 0.00 2.52
3580 6330 3.904136 ATCTGCGTTGTTTCCTTCTTG 57.096 42.857 0.00 0.00 0.00 3.02
3581 6331 2.912771 TCTGCGTTGTTTCCTTCTTGA 58.087 42.857 0.00 0.00 0.00 3.02
3582 6332 3.275143 TCTGCGTTGTTTCCTTCTTGAA 58.725 40.909 0.00 0.00 0.00 2.69
3583 6333 3.312421 TCTGCGTTGTTTCCTTCTTGAAG 59.688 43.478 3.55 3.55 0.00 3.02
3584 6334 2.357637 TGCGTTGTTTCCTTCTTGAAGG 59.642 45.455 20.21 20.21 41.35 3.46
3585 6335 2.858646 GCGTTGTTTCCTTCTTGAAGGC 60.859 50.000 21.16 10.47 39.80 4.35
3586 6336 2.357637 CGTTGTTTCCTTCTTGAAGGCA 59.642 45.455 21.16 10.60 39.80 4.75
3587 6337 3.004734 CGTTGTTTCCTTCTTGAAGGCAT 59.995 43.478 21.16 0.00 39.80 4.40
3588 6338 4.550422 GTTGTTTCCTTCTTGAAGGCATC 58.450 43.478 21.16 12.20 39.80 3.91
3589 6339 2.813754 TGTTTCCTTCTTGAAGGCATCG 59.186 45.455 21.16 1.77 39.80 3.84
3590 6340 1.453155 TTCCTTCTTGAAGGCATCGC 58.547 50.000 21.16 0.00 39.80 4.58
3591 6341 0.615331 TCCTTCTTGAAGGCATCGCT 59.385 50.000 21.16 0.00 39.80 4.93
3592 6342 1.831106 TCCTTCTTGAAGGCATCGCTA 59.169 47.619 21.16 3.16 39.80 4.26
3593 6343 2.435805 TCCTTCTTGAAGGCATCGCTAT 59.564 45.455 21.16 0.00 39.80 2.97
3594 6344 2.547211 CCTTCTTGAAGGCATCGCTATG 59.453 50.000 15.43 0.00 36.09 2.23
3595 6345 3.461061 CTTCTTGAAGGCATCGCTATGA 58.539 45.455 1.73 0.00 34.84 2.15
3596 6346 3.541996 TCTTGAAGGCATCGCTATGAA 57.458 42.857 1.73 0.00 34.84 2.57
3597 6347 3.461061 TCTTGAAGGCATCGCTATGAAG 58.539 45.455 1.73 0.00 34.84 3.02
3598 6348 3.132824 TCTTGAAGGCATCGCTATGAAGA 59.867 43.478 1.73 0.00 34.84 2.87
3599 6349 3.541996 TGAAGGCATCGCTATGAAGAA 57.458 42.857 1.73 0.00 34.84 2.52
3600 6350 3.461061 TGAAGGCATCGCTATGAAGAAG 58.539 45.455 1.73 0.00 34.84 2.85
3601 6351 3.118629 TGAAGGCATCGCTATGAAGAAGT 60.119 43.478 1.73 0.00 34.84 3.01
3602 6352 3.550437 AGGCATCGCTATGAAGAAGTT 57.450 42.857 1.73 0.00 34.84 2.66
3603 6353 3.462021 AGGCATCGCTATGAAGAAGTTC 58.538 45.455 1.73 0.00 34.84 3.01
3604 6354 3.118629 AGGCATCGCTATGAAGAAGTTCA 60.119 43.478 5.50 0.00 46.81 3.18
3605 6355 3.623060 GGCATCGCTATGAAGAAGTTCAA 59.377 43.478 5.50 0.00 45.88 2.69
3606 6356 4.260538 GGCATCGCTATGAAGAAGTTCAAG 60.261 45.833 5.50 0.00 45.88 3.02
3607 6357 4.260538 GCATCGCTATGAAGAAGTTCAAGG 60.261 45.833 5.50 0.00 45.88 3.61
3608 6358 3.262420 TCGCTATGAAGAAGTTCAAGGC 58.738 45.455 5.50 0.21 45.88 4.35
3609 6359 2.352960 CGCTATGAAGAAGTTCAAGGCC 59.647 50.000 5.50 0.00 45.88 5.19
3610 6360 3.347216 GCTATGAAGAAGTTCAAGGCCA 58.653 45.455 5.01 0.00 45.88 5.36
3611 6361 3.127721 GCTATGAAGAAGTTCAAGGCCAC 59.872 47.826 5.01 0.00 45.88 5.01
3612 6362 3.515602 ATGAAGAAGTTCAAGGCCACT 57.484 42.857 5.01 0.00 45.88 4.00
3613 6363 2.851195 TGAAGAAGTTCAAGGCCACTC 58.149 47.619 5.01 0.00 39.85 3.51
3614 6364 2.439507 TGAAGAAGTTCAAGGCCACTCT 59.560 45.455 5.01 0.00 39.85 3.24
3615 6365 2.849294 AGAAGTTCAAGGCCACTCTC 57.151 50.000 5.01 0.67 0.00 3.20
3616 6366 2.334023 AGAAGTTCAAGGCCACTCTCT 58.666 47.619 5.01 2.99 0.00 3.10
3617 6367 2.038295 AGAAGTTCAAGGCCACTCTCTG 59.962 50.000 5.01 0.00 0.00 3.35
3618 6368 0.036022 AGTTCAAGGCCACTCTCTGC 59.964 55.000 5.01 0.00 0.00 4.26
3619 6369 0.036022 GTTCAAGGCCACTCTCTGCT 59.964 55.000 5.01 0.00 0.00 4.24
3620 6370 1.276421 GTTCAAGGCCACTCTCTGCTA 59.724 52.381 5.01 0.00 0.00 3.49
3621 6371 0.898320 TCAAGGCCACTCTCTGCTAC 59.102 55.000 5.01 0.00 0.00 3.58
3622 6372 0.107945 CAAGGCCACTCTCTGCTACC 60.108 60.000 5.01 0.00 0.00 3.18
3623 6373 0.252467 AAGGCCACTCTCTGCTACCT 60.252 55.000 5.01 0.00 0.00 3.08
3624 6374 0.686112 AGGCCACTCTCTGCTACCTC 60.686 60.000 5.01 0.00 0.00 3.85
3625 6375 1.681486 GGCCACTCTCTGCTACCTCC 61.681 65.000 0.00 0.00 0.00 4.30
3626 6376 2.010582 GCCACTCTCTGCTACCTCCG 62.011 65.000 0.00 0.00 0.00 4.63
3627 6377 1.388065 CCACTCTCTGCTACCTCCGG 61.388 65.000 0.00 0.00 0.00 5.14
3628 6378 0.681564 CACTCTCTGCTACCTCCGGT 60.682 60.000 0.00 0.00 40.16 5.28
3629 6379 0.917533 ACTCTCTGCTACCTCCGGTA 59.082 55.000 0.00 0.00 37.09 4.02
3639 6389 2.156102 ACCTCCGGTAGAAACCCTAG 57.844 55.000 0.00 0.00 43.54 3.02
3640 6390 1.642762 ACCTCCGGTAGAAACCCTAGA 59.357 52.381 0.00 0.00 43.54 2.43
3641 6391 2.246849 ACCTCCGGTAGAAACCCTAGAT 59.753 50.000 0.00 0.00 43.54 1.98
3642 6392 2.892215 CCTCCGGTAGAAACCCTAGATC 59.108 54.545 0.00 0.00 43.54 2.75
3643 6393 2.553172 CTCCGGTAGAAACCCTAGATCG 59.447 54.545 0.00 0.00 43.54 3.69
3644 6394 1.612463 CCGGTAGAAACCCTAGATCGG 59.388 57.143 0.00 0.00 43.54 4.18
3645 6395 2.579873 CGGTAGAAACCCTAGATCGGA 58.420 52.381 0.00 0.00 43.54 4.55
3646 6396 3.155501 CGGTAGAAACCCTAGATCGGAT 58.844 50.000 0.00 0.00 43.54 4.18
3647 6397 3.057456 CGGTAGAAACCCTAGATCGGATG 60.057 52.174 0.00 0.00 43.54 3.51
3648 6398 4.150359 GGTAGAAACCCTAGATCGGATGA 58.850 47.826 0.00 0.00 40.21 2.92
3649 6399 4.773149 GGTAGAAACCCTAGATCGGATGAT 59.227 45.833 0.00 0.00 40.21 2.45
3650 6400 5.105675 GGTAGAAACCCTAGATCGGATGATC 60.106 48.000 0.00 0.00 44.31 2.92
3651 6401 8.279449 GGTAGAAACCCTAGATCGGATGATCG 62.279 50.000 0.00 0.00 46.31 3.69
3658 6408 1.901538 GATCGGATGATCGGATGACG 58.098 55.000 18.50 0.50 41.51 4.35
3659 6409 0.528017 ATCGGATGATCGGATGACGG 59.472 55.000 13.76 0.00 44.45 4.79
3660 6410 1.734477 CGGATGATCGGATGACGGC 60.734 63.158 0.00 0.00 44.45 5.68
3661 6411 1.734477 GGATGATCGGATGACGGCG 60.734 63.158 4.80 4.80 44.45 6.46
3662 6412 1.734477 GATGATCGGATGACGGCGG 60.734 63.158 13.24 0.00 44.45 6.13
3663 6413 3.865929 ATGATCGGATGACGGCGGC 62.866 63.158 13.24 9.67 44.45 6.53
3678 6428 3.112709 GGCGCTCTGGTGTCGTTC 61.113 66.667 7.64 0.00 0.00 3.95
3679 6429 3.112709 GCGCTCTGGTGTCGTTCC 61.113 66.667 0.00 0.00 0.00 3.62
3680 6430 2.651361 CGCTCTGGTGTCGTTCCT 59.349 61.111 0.00 0.00 0.00 3.36
3681 6431 1.444553 CGCTCTGGTGTCGTTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
3682 6432 1.079750 GCTCTGGTGTCGTTCCTCC 60.080 63.158 0.00 0.00 0.00 4.30
3683 6433 1.592223 CTCTGGTGTCGTTCCTCCC 59.408 63.158 0.00 0.00 0.00 4.30
3684 6434 0.900647 CTCTGGTGTCGTTCCTCCCT 60.901 60.000 0.00 0.00 0.00 4.20
3685 6435 0.471211 TCTGGTGTCGTTCCTCCCTT 60.471 55.000 0.00 0.00 0.00 3.95
3686 6436 0.320771 CTGGTGTCGTTCCTCCCTTG 60.321 60.000 0.00 0.00 0.00 3.61
3687 6437 1.003718 GGTGTCGTTCCTCCCTTGG 60.004 63.158 0.00 0.00 0.00 3.61
3688 6438 1.003718 GTGTCGTTCCTCCCTTGGG 60.004 63.158 0.00 0.00 0.00 4.12
3689 6439 2.221299 TGTCGTTCCTCCCTTGGGG 61.221 63.158 5.78 0.00 46.11 4.96
3699 6449 2.677228 CCTTGGGGGCGTCATTCT 59.323 61.111 0.00 0.00 0.00 2.40
3700 6450 1.000896 CCTTGGGGGCGTCATTCTT 60.001 57.895 0.00 0.00 0.00 2.52
3701 6451 1.315257 CCTTGGGGGCGTCATTCTTG 61.315 60.000 0.00 0.00 0.00 3.02
3702 6452 1.304052 TTGGGGGCGTCATTCTTGG 60.304 57.895 0.00 0.00 0.00 3.61
3703 6453 1.784301 TTGGGGGCGTCATTCTTGGA 61.784 55.000 0.00 0.00 0.00 3.53
3704 6454 1.452108 GGGGGCGTCATTCTTGGAG 60.452 63.158 0.00 0.00 0.00 3.86
3705 6455 1.452108 GGGGCGTCATTCTTGGAGG 60.452 63.158 0.00 0.00 0.00 4.30
3706 6456 1.299976 GGGCGTCATTCTTGGAGGT 59.700 57.895 0.00 0.00 0.00 3.85
3707 6457 0.539986 GGGCGTCATTCTTGGAGGTA 59.460 55.000 0.00 0.00 0.00 3.08
3708 6458 1.653151 GGCGTCATTCTTGGAGGTAC 58.347 55.000 0.00 0.00 0.00 3.34
3709 6459 1.066430 GGCGTCATTCTTGGAGGTACA 60.066 52.381 0.00 0.00 0.00 2.90
3710 6460 2.000447 GCGTCATTCTTGGAGGTACAC 59.000 52.381 0.00 0.00 0.00 2.90
3711 6461 2.611971 GCGTCATTCTTGGAGGTACACA 60.612 50.000 0.00 0.00 0.00 3.72
3712 6462 2.993899 CGTCATTCTTGGAGGTACACAC 59.006 50.000 0.00 0.00 0.00 3.82
3713 6463 2.993899 GTCATTCTTGGAGGTACACACG 59.006 50.000 0.00 0.00 0.00 4.49
3714 6464 2.631062 TCATTCTTGGAGGTACACACGT 59.369 45.455 0.00 0.00 0.00 4.49
3715 6465 2.519377 TTCTTGGAGGTACACACGTG 57.481 50.000 15.48 15.48 0.00 4.49
3716 6466 1.694844 TCTTGGAGGTACACACGTGA 58.305 50.000 25.01 0.00 0.00 4.35
3717 6467 2.244695 TCTTGGAGGTACACACGTGAT 58.755 47.619 25.01 12.46 0.00 3.06
3718 6468 2.230508 TCTTGGAGGTACACACGTGATC 59.769 50.000 25.01 9.46 0.00 2.92
3719 6469 0.524414 TGGAGGTACACACGTGATCG 59.476 55.000 25.01 12.52 43.34 3.69
3720 6470 0.806868 GGAGGTACACACGTGATCGA 59.193 55.000 25.01 0.96 40.62 3.59
3721 6471 1.202154 GGAGGTACACACGTGATCGAG 60.202 57.143 25.01 8.71 40.62 4.04
3722 6472 0.809385 AGGTACACACGTGATCGAGG 59.191 55.000 25.01 6.56 40.62 4.63
3723 6473 0.179145 GGTACACACGTGATCGAGGG 60.179 60.000 25.01 0.00 40.62 4.30
3724 6474 0.806868 GTACACACGTGATCGAGGGA 59.193 55.000 25.01 0.00 40.62 4.20
3725 6475 0.806868 TACACACGTGATCGAGGGAC 59.193 55.000 25.01 0.00 40.62 4.46
3726 6476 1.153823 CACACGTGATCGAGGGACC 60.154 63.158 25.01 0.00 40.62 4.46
3727 6477 1.605451 ACACGTGATCGAGGGACCA 60.605 57.895 25.01 0.00 40.62 4.02
3728 6478 1.139734 CACGTGATCGAGGGACCAG 59.860 63.158 10.90 0.00 40.62 4.00
3729 6479 1.001269 ACGTGATCGAGGGACCAGA 60.001 57.895 0.00 0.00 40.62 3.86
3730 6480 1.032657 ACGTGATCGAGGGACCAGAG 61.033 60.000 0.00 0.00 40.62 3.35
3731 6481 1.729470 CGTGATCGAGGGACCAGAGG 61.729 65.000 0.00 0.00 39.71 3.69
3732 6482 0.395862 GTGATCGAGGGACCAGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
3733 6483 0.395862 TGATCGAGGGACCAGAGGAC 60.396 60.000 0.00 0.00 0.00 3.85
3734 6484 0.395862 GATCGAGGGACCAGAGGACA 60.396 60.000 0.00 0.00 0.00 4.02
3735 6485 0.263172 ATCGAGGGACCAGAGGACAT 59.737 55.000 0.00 0.00 0.00 3.06
3736 6486 0.924090 TCGAGGGACCAGAGGACATA 59.076 55.000 0.00 0.00 0.00 2.29
3737 6487 1.499438 TCGAGGGACCAGAGGACATAT 59.501 52.381 0.00 0.00 0.00 1.78
3738 6488 2.091278 TCGAGGGACCAGAGGACATATT 60.091 50.000 0.00 0.00 0.00 1.28
3739 6489 2.700897 CGAGGGACCAGAGGACATATTT 59.299 50.000 0.00 0.00 0.00 1.40
3740 6490 3.134804 CGAGGGACCAGAGGACATATTTT 59.865 47.826 0.00 0.00 0.00 1.82
3741 6491 4.384208 CGAGGGACCAGAGGACATATTTTT 60.384 45.833 0.00 0.00 0.00 1.94
3755 6505 4.988744 TTTTTGGTGGAGCGGTGA 57.011 50.000 0.00 0.00 0.00 4.02
3756 6506 3.430473 TTTTTGGTGGAGCGGTGAT 57.570 47.368 0.00 0.00 0.00 3.06
3757 6507 1.698506 TTTTTGGTGGAGCGGTGATT 58.301 45.000 0.00 0.00 0.00 2.57
3758 6508 1.243902 TTTTGGTGGAGCGGTGATTC 58.756 50.000 0.00 0.00 0.00 2.52
3759 6509 0.109532 TTTGGTGGAGCGGTGATTCA 59.890 50.000 0.00 0.00 0.00 2.57
3760 6510 0.327924 TTGGTGGAGCGGTGATTCAT 59.672 50.000 0.00 0.00 0.00 2.57
3761 6511 0.107703 TGGTGGAGCGGTGATTCATC 60.108 55.000 0.00 0.00 0.00 2.92
3762 6512 0.815615 GGTGGAGCGGTGATTCATCC 60.816 60.000 0.00 0.00 0.00 3.51
3763 6513 0.179000 GTGGAGCGGTGATTCATCCT 59.821 55.000 0.00 0.00 0.00 3.24
3764 6514 1.412710 GTGGAGCGGTGATTCATCCTA 59.587 52.381 0.00 0.00 0.00 2.94
3765 6515 1.412710 TGGAGCGGTGATTCATCCTAC 59.587 52.381 0.00 0.00 0.00 3.18
3766 6516 1.412710 GGAGCGGTGATTCATCCTACA 59.587 52.381 0.00 0.00 0.00 2.74
3767 6517 2.474816 GAGCGGTGATTCATCCTACAC 58.525 52.381 0.00 0.00 0.00 2.90
3768 6518 1.831106 AGCGGTGATTCATCCTACACA 59.169 47.619 0.00 0.00 35.33 3.72
3769 6519 1.933853 GCGGTGATTCATCCTACACAC 59.066 52.381 0.00 0.00 35.33 3.82
3770 6520 2.418746 GCGGTGATTCATCCTACACACT 60.419 50.000 0.00 0.00 35.33 3.55
3771 6521 3.190079 CGGTGATTCATCCTACACACTG 58.810 50.000 0.00 0.00 35.33 3.66
3772 6522 3.119137 CGGTGATTCATCCTACACACTGA 60.119 47.826 0.00 0.00 36.96 3.41
3773 6523 4.442052 CGGTGATTCATCCTACACACTGAT 60.442 45.833 0.00 0.00 36.96 2.90
3774 6524 4.813161 GGTGATTCATCCTACACACTGATG 59.187 45.833 0.00 0.00 37.75 3.07
3775 6525 4.813161 GTGATTCATCCTACACACTGATGG 59.187 45.833 0.00 0.00 37.17 3.51
3776 6526 2.988010 TCATCCTACACACTGATGGC 57.012 50.000 0.00 0.00 37.17 4.40
3777 6527 1.136891 TCATCCTACACACTGATGGCG 59.863 52.381 0.00 0.00 37.17 5.69
3778 6528 1.136891 CATCCTACACACTGATGGCGA 59.863 52.381 0.00 0.00 33.79 5.54
3779 6529 0.530744 TCCTACACACTGATGGCGAC 59.469 55.000 0.00 0.00 0.00 5.19
3780 6530 0.802222 CCTACACACTGATGGCGACG 60.802 60.000 0.00 0.00 0.00 5.12
3781 6531 0.802222 CTACACACTGATGGCGACGG 60.802 60.000 0.00 0.00 0.00 4.79
3782 6532 1.245376 TACACACTGATGGCGACGGA 61.245 55.000 0.00 0.00 0.00 4.69
3783 6533 1.153568 CACACTGATGGCGACGGAT 60.154 57.895 0.00 0.00 0.00 4.18
3784 6534 1.141881 ACACTGATGGCGACGGATC 59.858 57.895 0.00 0.00 0.00 3.36
3785 6535 1.323271 ACACTGATGGCGACGGATCT 61.323 55.000 0.00 0.00 0.00 2.75
3786 6536 0.179100 CACTGATGGCGACGGATCTT 60.179 55.000 0.00 0.00 0.00 2.40
3787 6537 0.179100 ACTGATGGCGACGGATCTTG 60.179 55.000 0.00 0.00 0.00 3.02
3788 6538 0.103026 CTGATGGCGACGGATCTTGA 59.897 55.000 0.00 0.00 0.00 3.02
3789 6539 0.179111 TGATGGCGACGGATCTTGAC 60.179 55.000 0.00 0.00 0.00 3.18
3790 6540 1.209275 GATGGCGACGGATCTTGACG 61.209 60.000 0.00 0.00 0.00 4.35
3791 6541 2.582498 GGCGACGGATCTTGACGG 60.582 66.667 0.00 0.00 0.00 4.79
3792 6542 3.255379 GCGACGGATCTTGACGGC 61.255 66.667 0.00 0.00 34.05 5.68
3793 6543 2.180769 CGACGGATCTTGACGGCA 59.819 61.111 0.00 0.00 38.20 5.69
3794 6544 1.226974 CGACGGATCTTGACGGCAT 60.227 57.895 0.00 0.00 38.20 4.40
3795 6545 1.482621 CGACGGATCTTGACGGCATG 61.483 60.000 0.00 0.00 38.20 4.06
3796 6546 1.153369 ACGGATCTTGACGGCATGG 60.153 57.895 4.05 0.00 0.00 3.66
3797 6547 2.537560 CGGATCTTGACGGCATGGC 61.538 63.158 9.69 9.69 0.00 4.40
3798 6548 2.537560 GGATCTTGACGGCATGGCG 61.538 63.158 36.56 36.56 0.00 5.69
3799 6549 3.173390 GATCTTGACGGCATGGCGC 62.173 63.158 37.83 29.32 41.28 6.53
3800 6550 3.974835 ATCTTGACGGCATGGCGCA 62.975 57.895 37.83 31.28 45.17 6.09
3801 6551 4.170062 CTTGACGGCATGGCGCAG 62.170 66.667 37.83 26.90 45.17 5.18
3813 6563 3.266964 GCGCAGTGCAGATTTGGA 58.733 55.556 16.83 0.00 45.45 3.53
3814 6564 1.136147 GCGCAGTGCAGATTTGGAG 59.864 57.895 16.83 0.00 45.45 3.86
3815 6565 1.580845 GCGCAGTGCAGATTTGGAGT 61.581 55.000 16.83 0.00 45.45 3.85
3816 6566 0.877071 CGCAGTGCAGATTTGGAGTT 59.123 50.000 16.83 0.00 0.00 3.01
3817 6567 1.135859 CGCAGTGCAGATTTGGAGTTC 60.136 52.381 16.83 0.00 0.00 3.01
3818 6568 1.135859 GCAGTGCAGATTTGGAGTTCG 60.136 52.381 11.09 0.00 0.00 3.95
3819 6569 1.135859 CAGTGCAGATTTGGAGTTCGC 60.136 52.381 0.00 0.00 0.00 4.70
3820 6570 1.160137 GTGCAGATTTGGAGTTCGCT 58.840 50.000 0.00 0.00 0.00 4.93
3821 6571 1.135859 GTGCAGATTTGGAGTTCGCTG 60.136 52.381 0.00 0.00 0.00 5.18
3822 6572 1.160137 GCAGATTTGGAGTTCGCTGT 58.840 50.000 0.00 0.00 0.00 4.40
3823 6573 1.135859 GCAGATTTGGAGTTCGCTGTG 60.136 52.381 0.00 0.00 0.00 3.66
3824 6574 1.466167 CAGATTTGGAGTTCGCTGTGG 59.534 52.381 0.00 0.00 0.00 4.17
3825 6575 0.804989 GATTTGGAGTTCGCTGTGGG 59.195 55.000 0.00 0.00 0.00 4.61
3826 6576 0.400213 ATTTGGAGTTCGCTGTGGGA 59.600 50.000 0.00 0.00 0.00 4.37
3827 6577 0.250295 TTTGGAGTTCGCTGTGGGAG 60.250 55.000 0.00 0.00 0.00 4.30
3828 6578 2.111999 TTGGAGTTCGCTGTGGGAGG 62.112 60.000 0.00 0.00 0.00 4.30
3829 6579 2.283529 GGAGTTCGCTGTGGGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
3830 6580 1.617947 GGAGTTCGCTGTGGGAGGAT 61.618 60.000 0.00 0.00 0.00 3.24
3831 6581 0.460987 GAGTTCGCTGTGGGAGGATG 60.461 60.000 0.00 0.00 0.00 3.51
3832 6582 1.450312 GTTCGCTGTGGGAGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
3833 6583 1.612146 TTCGCTGTGGGAGGATGGA 60.612 57.895 0.00 0.00 0.00 3.41
3834 6584 1.899437 TTCGCTGTGGGAGGATGGAC 61.899 60.000 0.00 0.00 0.00 4.02
3835 6585 2.362369 CGCTGTGGGAGGATGGACT 61.362 63.158 0.00 0.00 0.00 3.85
3836 6586 1.524482 GCTGTGGGAGGATGGACTC 59.476 63.158 0.00 0.00 36.76 3.36
3837 6587 1.819229 CTGTGGGAGGATGGACTCG 59.181 63.158 0.00 0.00 38.39 4.18
3838 6588 2.303549 CTGTGGGAGGATGGACTCGC 62.304 65.000 0.00 0.00 46.93 5.03
3840 6590 4.593864 GGGAGGATGGACTCGCGC 62.594 72.222 0.00 0.00 40.01 6.86
3841 6591 3.838271 GGAGGATGGACTCGCGCA 61.838 66.667 8.75 0.00 38.39 6.09
3842 6592 2.279120 GAGGATGGACTCGCGCAG 60.279 66.667 8.75 6.77 0.00 5.18
3843 6593 3.781770 GAGGATGGACTCGCGCAGG 62.782 68.421 8.75 0.80 0.00 4.85
3844 6594 3.838271 GGATGGACTCGCGCAGGA 61.838 66.667 8.75 0.00 0.00 3.86
3845 6595 2.279120 GATGGACTCGCGCAGGAG 60.279 66.667 8.75 9.70 39.97 3.69
3846 6596 3.781770 GATGGACTCGCGCAGGAGG 62.782 68.421 15.41 0.00 38.39 4.30
3848 6598 4.500116 GGACTCGCGCAGGAGGAC 62.500 72.222 15.41 9.34 38.39 3.85
3849 6599 4.838486 GACTCGCGCAGGAGGACG 62.838 72.222 15.41 0.00 38.39 4.79
3851 6601 4.838486 CTCGCGCAGGAGGACGAC 62.838 72.222 8.75 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.076923 GGCGGTGACTAGAGGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1 2 2.482333 CGGCGGTGACTAGAGGGAG 61.482 68.421 0.00 0.00 0.00 4.30
2 3 2.439701 CGGCGGTGACTAGAGGGA 60.440 66.667 0.00 0.00 0.00 4.20
3 4 4.208686 GCGGCGGTGACTAGAGGG 62.209 72.222 9.78 0.00 0.00 4.30
4 5 4.208686 GGCGGCGGTGACTAGAGG 62.209 72.222 9.78 0.00 0.00 3.69
28 29 3.869272 CATTGAGGACTGCCGCGC 61.869 66.667 0.00 0.00 39.96 6.86
29 30 3.869272 GCATTGAGGACTGCCGCG 61.869 66.667 0.00 0.00 39.96 6.46
30 31 2.437359 AGCATTGAGGACTGCCGC 60.437 61.111 0.00 0.00 39.22 6.53
31 32 1.078918 TGAGCATTGAGGACTGCCG 60.079 57.895 0.00 0.00 39.22 5.69
32 33 0.747283 CCTGAGCATTGAGGACTGCC 60.747 60.000 0.00 0.00 39.22 4.85
33 34 0.035630 ACCTGAGCATTGAGGACTGC 60.036 55.000 0.00 0.00 38.69 4.40
34 35 1.678123 CCACCTGAGCATTGAGGACTG 60.678 57.143 0.00 0.00 33.16 3.51
35 36 0.617413 CCACCTGAGCATTGAGGACT 59.383 55.000 0.00 0.00 33.16 3.85
36 37 1.028868 GCCACCTGAGCATTGAGGAC 61.029 60.000 0.00 0.00 33.16 3.85
40 41 2.046023 CCGCCACCTGAGCATTGA 60.046 61.111 0.00 0.00 0.00 2.57
101 109 2.673368 CGGTCCTCTCACAATAGCAAAC 59.327 50.000 0.00 0.00 0.00 2.93
281 298 3.054948 TGATAGGAGGTAACAAAACGGGG 60.055 47.826 0.00 0.00 41.41 5.73
500 578 3.381272 CCTCCAAACACAAGCAAGAAGAA 59.619 43.478 0.00 0.00 0.00 2.52
522 601 2.161410 TCTCGCACAAACAACATATGCC 59.839 45.455 1.58 0.00 32.55 4.40
690 857 1.322442 GCCCCATAGCATCTTCAACC 58.678 55.000 0.00 0.00 0.00 3.77
703 870 0.544833 TCTGCATGGTTTTGCCCCAT 60.545 50.000 0.00 0.00 43.53 4.00
706 873 1.079612 GCTCTGCATGGTTTTGCCC 60.080 57.895 0.00 0.00 42.06 5.36
707 874 1.079612 GGCTCTGCATGGTTTTGCC 60.080 57.895 0.00 0.00 42.06 4.52
708 875 1.079612 GGGCTCTGCATGGTTTTGC 60.080 57.895 0.00 0.00 43.07 3.68
709 876 1.213537 CGGGCTCTGCATGGTTTTG 59.786 57.895 0.00 0.00 0.00 2.44
710 877 0.827507 AACGGGCTCTGCATGGTTTT 60.828 50.000 0.00 0.00 0.00 2.43
711 878 1.228552 AACGGGCTCTGCATGGTTT 60.229 52.632 0.00 0.00 0.00 3.27
712 879 1.675641 GAACGGGCTCTGCATGGTT 60.676 57.895 0.00 0.00 0.00 3.67
713 880 2.045926 GAACGGGCTCTGCATGGT 60.046 61.111 0.00 0.00 0.00 3.55
714 881 0.107703 TAAGAACGGGCTCTGCATGG 60.108 55.000 0.00 0.00 0.00 3.66
715 882 1.009829 GTAAGAACGGGCTCTGCATG 58.990 55.000 0.00 0.00 0.00 4.06
716 883 0.905357 AGTAAGAACGGGCTCTGCAT 59.095 50.000 0.00 0.00 0.00 3.96
717 884 1.203994 GTAGTAAGAACGGGCTCTGCA 59.796 52.381 0.00 0.00 0.00 4.41
734 901 6.148948 GCACTGATTGTATCTGAGCTAGTAG 58.851 44.000 0.00 0.00 40.04 2.57
735 902 5.278022 CGCACTGATTGTATCTGAGCTAGTA 60.278 44.000 11.72 0.00 40.64 1.82
736 903 4.498850 CGCACTGATTGTATCTGAGCTAGT 60.499 45.833 11.72 0.00 40.64 2.57
817 988 2.128771 AAGGGTGATTTGCTACGCAT 57.871 45.000 0.00 0.00 38.76 4.73
826 997 4.381932 GCATCGATTTGGAAAGGGTGATTT 60.382 41.667 0.00 0.00 0.00 2.17
853 1024 2.513897 CGTCGGATGCTTTCCCCC 60.514 66.667 1.30 0.00 42.06 5.40
854 1025 3.202706 GCGTCGGATGCTTTCCCC 61.203 66.667 14.80 0.00 42.06 4.81
882 1053 3.181774 CGCGTCTGGTAGTTAATGTATGC 59.818 47.826 0.00 0.00 0.00 3.14
987 1186 1.603236 GCGTCATGGGAATGGGCAAA 61.603 55.000 0.00 0.00 0.00 3.68
993 1192 0.533755 GGGAGAGCGTCATGGGAATG 60.534 60.000 0.00 0.00 0.00 2.67
1023 1225 2.124653 GCGACGAGGGAGAGGAGA 60.125 66.667 0.00 0.00 0.00 3.71
1053 1255 6.321821 AGCCCATTAATTCTAACACCAGTA 57.678 37.500 0.00 0.00 0.00 2.74
1054 1256 5.193099 AGCCCATTAATTCTAACACCAGT 57.807 39.130 0.00 0.00 0.00 4.00
1055 1257 5.765182 CCTAGCCCATTAATTCTAACACCAG 59.235 44.000 0.00 0.00 0.00 4.00
1056 1258 5.690865 CCTAGCCCATTAATTCTAACACCA 58.309 41.667 0.00 0.00 0.00 4.17
1057 1259 4.519350 GCCTAGCCCATTAATTCTAACACC 59.481 45.833 0.00 0.00 0.00 4.16
1058 1260 4.519350 GGCCTAGCCCATTAATTCTAACAC 59.481 45.833 0.00 0.00 44.06 3.32
1206 1409 6.486657 CCTTTCTCTTCTCACACACCATTTAA 59.513 38.462 0.00 0.00 0.00 1.52
1232 1435 1.063488 GCGAGCGTGTGTGGTTTTT 59.937 52.632 0.00 0.00 0.00 1.94
1260 1463 2.813179 GCATGTACGCCTCGCCAAG 61.813 63.158 0.00 0.00 0.00 3.61
1261 1464 2.817834 GCATGTACGCCTCGCCAA 60.818 61.111 0.00 0.00 0.00 4.52
1302 1519 0.981943 AAGGAGACGGACCGGATTTT 59.018 50.000 20.00 3.04 0.00 1.82
1424 1643 0.249699 TGTGTCGCGACCACAATCTT 60.250 50.000 34.34 0.00 0.00 2.40
1425 1644 0.249699 TTGTGTCGCGACCACAATCT 60.250 50.000 33.29 0.00 34.39 2.40
1643 1863 2.492088 AGCGCTTCCCAAAAACCTAATC 59.508 45.455 2.64 0.00 0.00 1.75
2152 2405 3.760035 GGGTCGCCGAAGCAGAGA 61.760 66.667 0.00 0.00 39.83 3.10
2521 2797 0.322648 CATCACTCAGGCACAGGTCA 59.677 55.000 0.00 0.00 0.00 4.02
2633 5177 0.664767 GGCGGTGCTGATATCTCGAC 60.665 60.000 3.98 0.00 0.00 4.20
2703 5284 3.257624 ACAAGTTAGAGACGGACGGAATT 59.742 43.478 0.00 0.00 0.00 2.17
2706 5287 1.538512 CACAAGTTAGAGACGGACGGA 59.461 52.381 0.00 0.00 0.00 4.69
2707 5288 1.538512 TCACAAGTTAGAGACGGACGG 59.461 52.381 0.00 0.00 0.00 4.79
2708 5289 2.983402 TCACAAGTTAGAGACGGACG 57.017 50.000 0.00 0.00 0.00 4.79
2709 5290 2.924290 GCATCACAAGTTAGAGACGGAC 59.076 50.000 0.00 0.00 0.00 4.79
2826 5431 2.895865 CATCGCCAGGCTGCAGAG 60.896 66.667 20.43 6.06 0.00 3.35
2839 5444 0.179045 ATTCCCGGCCTTTCTCATCG 60.179 55.000 0.00 0.00 0.00 3.84
2904 5535 0.800012 TTTATCAACAACGAGGCGGC 59.200 50.000 0.00 0.00 0.00 6.53
2927 5559 0.608640 AGAACTCAAGATCGCGGGTT 59.391 50.000 6.13 2.67 0.00 4.11
3229 5901 5.863935 GGCATTCTTTTTCCACACATAAGTC 59.136 40.000 0.00 0.00 0.00 3.01
3230 5902 5.564651 CGGCATTCTTTTTCCACACATAAGT 60.565 40.000 0.00 0.00 0.00 2.24
3232 5904 4.520874 TCGGCATTCTTTTTCCACACATAA 59.479 37.500 0.00 0.00 0.00 1.90
3234 5911 2.890311 TCGGCATTCTTTTTCCACACAT 59.110 40.909 0.00 0.00 0.00 3.21
3261 6010 9.539825 GAGATCAACATCTGCTAAAGATCTTAA 57.460 33.333 8.75 0.00 44.24 1.85
3310 6059 9.804758 GAGCTAGCTACAGATAAGTTCTTAAAA 57.195 33.333 19.38 0.00 29.93 1.52
3311 6060 8.129840 CGAGCTAGCTACAGATAAGTTCTTAAA 58.870 37.037 19.38 0.00 29.93 1.52
3312 6061 7.498239 TCGAGCTAGCTACAGATAAGTTCTTAA 59.502 37.037 19.38 0.00 29.93 1.85
3313 6062 6.990939 TCGAGCTAGCTACAGATAAGTTCTTA 59.009 38.462 19.38 0.00 29.93 2.10
3314 6063 5.823570 TCGAGCTAGCTACAGATAAGTTCTT 59.176 40.000 19.38 0.00 29.93 2.52
3315 6064 5.369833 TCGAGCTAGCTACAGATAAGTTCT 58.630 41.667 19.38 0.00 33.90 3.01
3316 6065 5.676532 TCGAGCTAGCTACAGATAAGTTC 57.323 43.478 19.38 0.00 0.00 3.01
3317 6066 6.001460 AGATCGAGCTAGCTACAGATAAGTT 58.999 40.000 19.38 2.37 0.00 2.66
3318 6067 5.411361 CAGATCGAGCTAGCTACAGATAAGT 59.589 44.000 19.38 8.44 0.00 2.24
3319 6068 5.673568 GCAGATCGAGCTAGCTACAGATAAG 60.674 48.000 19.38 17.03 0.00 1.73
3320 6069 4.155099 GCAGATCGAGCTAGCTACAGATAA 59.845 45.833 19.38 0.00 0.00 1.75
3321 6070 3.687212 GCAGATCGAGCTAGCTACAGATA 59.313 47.826 19.38 0.00 0.00 1.98
3322 6071 2.487762 GCAGATCGAGCTAGCTACAGAT 59.512 50.000 19.38 21.19 0.00 2.90
3323 6072 1.876799 GCAGATCGAGCTAGCTACAGA 59.123 52.381 19.38 17.43 0.00 3.41
3324 6073 1.606189 TGCAGATCGAGCTAGCTACAG 59.394 52.381 19.38 12.42 0.00 2.74
3325 6074 1.680338 TGCAGATCGAGCTAGCTACA 58.320 50.000 19.38 7.46 0.00 2.74
3326 6075 3.241701 GAATGCAGATCGAGCTAGCTAC 58.758 50.000 19.38 10.50 0.00 3.58
3384 6134 4.241555 ATCCAGATCGCCGGCCAC 62.242 66.667 23.46 12.55 0.00 5.01
3385 6135 4.240103 CATCCAGATCGCCGGCCA 62.240 66.667 23.46 9.24 0.00 5.36
3386 6136 4.241555 ACATCCAGATCGCCGGCC 62.242 66.667 23.46 7.02 0.00 6.13
3387 6137 2.969238 CACATCCAGATCGCCGGC 60.969 66.667 19.07 19.07 0.00 6.13
3388 6138 2.280389 CCACATCCAGATCGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
3389 6139 1.884464 CACCACATCCAGATCGCCG 60.884 63.158 0.00 0.00 0.00 6.46
3390 6140 1.524621 CCACCACATCCAGATCGCC 60.525 63.158 0.00 0.00 0.00 5.54
3391 6141 1.091771 CACCACCACATCCAGATCGC 61.092 60.000 0.00 0.00 0.00 4.58
3392 6142 1.091771 GCACCACCACATCCAGATCG 61.092 60.000 0.00 0.00 0.00 3.69
3393 6143 0.749454 GGCACCACCACATCCAGATC 60.749 60.000 0.00 0.00 38.86 2.75
3394 6144 1.304282 GGCACCACCACATCCAGAT 59.696 57.895 0.00 0.00 38.86 2.90
3395 6145 2.756400 GGCACCACCACATCCAGA 59.244 61.111 0.00 0.00 38.86 3.86
3396 6146 2.747460 CGGCACCACCACATCCAG 60.747 66.667 0.00 0.00 39.03 3.86
3397 6147 4.343323 CCGGCACCACCACATCCA 62.343 66.667 0.00 0.00 39.03 3.41
3415 6165 2.960659 CAGCAGATCAGCGAGCCG 60.961 66.667 4.27 0.00 40.15 5.52
3416 6166 2.588314 CCAGCAGATCAGCGAGCC 60.588 66.667 4.27 0.00 40.15 4.70
3417 6167 2.172372 CACCAGCAGATCAGCGAGC 61.172 63.158 4.27 0.00 40.15 5.03
3418 6168 2.172372 GCACCAGCAGATCAGCGAG 61.172 63.158 4.27 2.85 41.58 5.03
3419 6169 2.125391 GCACCAGCAGATCAGCGA 60.125 61.111 4.27 0.00 41.58 4.93
3420 6170 2.125229 AGCACCAGCAGATCAGCG 60.125 61.111 4.27 0.11 45.49 5.18
3421 6171 1.818785 GGAGCACCAGCAGATCAGC 60.819 63.158 1.07 1.07 45.49 4.26
3422 6172 1.600638 TGGAGCACCAGCAGATCAG 59.399 57.895 0.00 0.00 45.49 2.90
3423 6173 3.810255 TGGAGCACCAGCAGATCA 58.190 55.556 0.00 0.00 45.49 2.92
3431 6181 3.160585 CAGAACCCTGGAGCACCA 58.839 61.111 1.91 1.91 44.76 4.17
3432 6182 2.360475 GCAGAACCCTGGAGCACC 60.360 66.667 0.00 0.00 40.72 5.01
3433 6183 2.360475 GGCAGAACCCTGGAGCAC 60.360 66.667 0.00 0.00 40.72 4.40
3434 6184 2.530151 AGGCAGAACCCTGGAGCA 60.530 61.111 0.00 0.00 40.72 4.26
3435 6185 2.045536 CAGGCAGAACCCTGGAGC 60.046 66.667 0.00 0.00 46.93 4.70
3440 6190 2.450502 ACCACCAGGCAGAACCCT 60.451 61.111 0.00 0.00 40.58 4.34
3441 6191 2.282462 CACCACCAGGCAGAACCC 60.282 66.667 0.00 0.00 40.58 4.11
3442 6192 2.985847 GCACCACCAGGCAGAACC 60.986 66.667 0.00 0.00 39.06 3.62
3443 6193 2.113986 AGCACCACCAGGCAGAAC 59.886 61.111 0.00 0.00 39.06 3.01
3444 6194 2.113774 CAGCACCACCAGGCAGAA 59.886 61.111 0.00 0.00 39.06 3.02
3445 6195 3.957586 CCAGCACCACCAGGCAGA 61.958 66.667 0.00 0.00 39.06 4.26
3446 6196 4.275508 ACCAGCACCACCAGGCAG 62.276 66.667 0.00 0.00 39.06 4.85
3447 6197 4.584518 CACCAGCACCACCAGGCA 62.585 66.667 0.00 0.00 39.06 4.75
3449 6199 3.889692 ACCACCAGCACCACCAGG 61.890 66.667 0.00 0.00 42.21 4.45
3450 6200 2.416107 ATCACCACCAGCACCACCAG 62.416 60.000 0.00 0.00 0.00 4.00
3451 6201 2.459969 ATCACCACCAGCACCACCA 61.460 57.895 0.00 0.00 0.00 4.17
3452 6202 1.973281 CATCACCACCAGCACCACC 60.973 63.158 0.00 0.00 0.00 4.61
3453 6203 1.973281 CCATCACCACCAGCACCAC 60.973 63.158 0.00 0.00 0.00 4.16
3454 6204 2.435663 CCATCACCACCAGCACCA 59.564 61.111 0.00 0.00 0.00 4.17
3455 6205 3.064324 GCCATCACCACCAGCACC 61.064 66.667 0.00 0.00 0.00 5.01
3456 6206 3.434319 CGCCATCACCACCAGCAC 61.434 66.667 0.00 0.00 0.00 4.40
3457 6207 4.720902 CCGCCATCACCACCAGCA 62.721 66.667 0.00 0.00 0.00 4.41
3462 6212 4.722700 ACAGGCCGCCATCACCAC 62.723 66.667 13.15 0.00 0.00 4.16
3463 6213 4.720902 CACAGGCCGCCATCACCA 62.721 66.667 13.15 0.00 0.00 4.17
3472 6222 3.865929 AACTCTCGTGCACAGGCCG 62.866 63.158 18.64 1.94 40.13 6.13
3473 6223 2.031163 AACTCTCGTGCACAGGCC 59.969 61.111 18.64 0.00 40.13 5.19
3474 6224 2.320587 CCAACTCTCGTGCACAGGC 61.321 63.158 18.64 0.00 41.68 4.85
3475 6225 0.036952 ATCCAACTCTCGTGCACAGG 60.037 55.000 18.64 8.68 0.00 4.00
3476 6226 1.354040 GATCCAACTCTCGTGCACAG 58.646 55.000 18.64 13.22 0.00 3.66
3477 6227 0.037326 GGATCCAACTCTCGTGCACA 60.037 55.000 18.64 3.15 0.00 4.57
3478 6228 0.037326 TGGATCCAACTCTCGTGCAC 60.037 55.000 13.46 6.82 0.00 4.57
3479 6229 0.904649 ATGGATCCAACTCTCGTGCA 59.095 50.000 20.67 0.00 0.00 4.57
3480 6230 1.936547 GAATGGATCCAACTCTCGTGC 59.063 52.381 20.67 0.00 0.00 5.34
3481 6231 2.159240 TCGAATGGATCCAACTCTCGTG 60.159 50.000 20.67 6.08 0.00 4.35
3482 6232 2.100197 TCGAATGGATCCAACTCTCGT 58.900 47.619 20.67 0.00 0.00 4.18
3483 6233 2.860735 GTTCGAATGGATCCAACTCTCG 59.139 50.000 20.67 22.12 0.00 4.04
3484 6234 3.868077 CAGTTCGAATGGATCCAACTCTC 59.132 47.826 20.67 11.91 0.00 3.20
3485 6235 3.515502 TCAGTTCGAATGGATCCAACTCT 59.484 43.478 20.67 8.74 0.00 3.24
3486 6236 3.861840 TCAGTTCGAATGGATCCAACTC 58.138 45.455 20.67 16.92 0.00 3.01
3487 6237 3.981071 TCAGTTCGAATGGATCCAACT 57.019 42.857 20.67 14.45 0.00 3.16
3488 6238 4.272018 CAGATCAGTTCGAATGGATCCAAC 59.728 45.833 25.74 12.14 37.46 3.77
3489 6239 4.445453 CAGATCAGTTCGAATGGATCCAA 58.555 43.478 25.74 0.00 37.46 3.53
3490 6240 3.181462 CCAGATCAGTTCGAATGGATCCA 60.181 47.826 25.74 18.88 36.91 3.41
3491 6241 3.397482 CCAGATCAGTTCGAATGGATCC 58.603 50.000 25.74 4.20 36.91 3.36
3492 6242 3.181461 ACCCAGATCAGTTCGAATGGATC 60.181 47.826 23.68 23.68 36.91 3.36
3493 6243 2.774234 ACCCAGATCAGTTCGAATGGAT 59.226 45.455 13.55 13.04 36.91 3.41
3494 6244 2.093500 CACCCAGATCAGTTCGAATGGA 60.093 50.000 13.55 9.08 36.91 3.41
3495 6245 2.093500 TCACCCAGATCAGTTCGAATGG 60.093 50.000 0.00 3.45 35.33 3.16
3496 6246 3.251479 TCACCCAGATCAGTTCGAATG 57.749 47.619 0.00 1.09 0.00 2.67
3497 6247 3.981071 TTCACCCAGATCAGTTCGAAT 57.019 42.857 0.00 0.00 0.00 3.34
3498 6248 3.762407 TTTCACCCAGATCAGTTCGAA 57.238 42.857 0.00 0.00 0.00 3.71
3499 6249 3.071023 AGTTTTCACCCAGATCAGTTCGA 59.929 43.478 0.00 0.00 0.00 3.71
3500 6250 3.403038 AGTTTTCACCCAGATCAGTTCG 58.597 45.455 0.00 0.00 0.00 3.95
3501 6251 4.557496 GCAAGTTTTCACCCAGATCAGTTC 60.557 45.833 0.00 0.00 0.00 3.01
3502 6252 3.319122 GCAAGTTTTCACCCAGATCAGTT 59.681 43.478 0.00 0.00 0.00 3.16
3503 6253 2.887152 GCAAGTTTTCACCCAGATCAGT 59.113 45.455 0.00 0.00 0.00 3.41
3504 6254 2.229784 GGCAAGTTTTCACCCAGATCAG 59.770 50.000 0.00 0.00 0.00 2.90
3505 6255 2.158475 AGGCAAGTTTTCACCCAGATCA 60.158 45.455 0.00 0.00 0.00 2.92
3506 6256 2.519013 AGGCAAGTTTTCACCCAGATC 58.481 47.619 0.00 0.00 0.00 2.75
3507 6257 2.683211 AGGCAAGTTTTCACCCAGAT 57.317 45.000 0.00 0.00 0.00 2.90
3508 6258 2.306847 GAAGGCAAGTTTTCACCCAGA 58.693 47.619 0.00 0.00 0.00 3.86
3509 6259 1.001378 CGAAGGCAAGTTTTCACCCAG 60.001 52.381 0.00 0.00 0.00 4.45
3510 6260 1.028905 CGAAGGCAAGTTTTCACCCA 58.971 50.000 0.00 0.00 0.00 4.51
3511 6261 0.313987 CCGAAGGCAAGTTTTCACCC 59.686 55.000 0.00 0.00 46.14 4.61
3512 6262 3.865700 CCGAAGGCAAGTTTTCACC 57.134 52.632 0.00 0.00 46.14 4.02
3525 6275 2.167861 GCCTTAGCAGACGCCGAAG 61.168 63.158 0.00 0.00 39.83 3.79
3526 6276 2.125673 GCCTTAGCAGACGCCGAA 60.126 61.111 0.00 0.00 39.83 4.30
3527 6277 4.143333 GGCCTTAGCAGACGCCGA 62.143 66.667 0.00 0.00 42.56 5.54
3557 6307 3.003480 AGAAGGAAACAACGCAGATAGC 58.997 45.455 0.00 0.00 40.87 2.97
3558 6308 4.690748 TCAAGAAGGAAACAACGCAGATAG 59.309 41.667 0.00 0.00 0.00 2.08
3559 6309 4.637276 TCAAGAAGGAAACAACGCAGATA 58.363 39.130 0.00 0.00 0.00 1.98
3560 6310 3.476552 TCAAGAAGGAAACAACGCAGAT 58.523 40.909 0.00 0.00 0.00 2.90
3561 6311 2.912771 TCAAGAAGGAAACAACGCAGA 58.087 42.857 0.00 0.00 0.00 4.26
3562 6312 3.621794 CTTCAAGAAGGAAACAACGCAG 58.378 45.455 1.86 0.00 34.87 5.18
3563 6313 3.691049 CTTCAAGAAGGAAACAACGCA 57.309 42.857 1.86 0.00 34.87 5.24
3574 6324 3.461061 TCATAGCGATGCCTTCAAGAAG 58.539 45.455 1.33 2.83 38.14 2.85
3575 6325 3.541996 TCATAGCGATGCCTTCAAGAA 57.458 42.857 1.33 0.00 32.62 2.52
3576 6326 3.132824 TCTTCATAGCGATGCCTTCAAGA 59.867 43.478 1.33 3.22 32.62 3.02
3577 6327 3.461061 TCTTCATAGCGATGCCTTCAAG 58.539 45.455 1.33 0.87 32.62 3.02
3578 6328 3.541996 TCTTCATAGCGATGCCTTCAA 57.458 42.857 1.33 0.00 32.62 2.69
3579 6329 3.118629 ACTTCTTCATAGCGATGCCTTCA 60.119 43.478 1.33 0.00 32.62 3.02
3580 6330 3.462021 ACTTCTTCATAGCGATGCCTTC 58.538 45.455 1.33 0.00 32.62 3.46
3581 6331 3.550437 ACTTCTTCATAGCGATGCCTT 57.450 42.857 1.33 0.00 32.62 4.35
3582 6332 3.118629 TGAACTTCTTCATAGCGATGCCT 60.119 43.478 1.33 0.00 31.00 4.75
3583 6333 3.198068 TGAACTTCTTCATAGCGATGCC 58.802 45.455 1.33 0.00 31.00 4.40
3584 6334 4.260538 CCTTGAACTTCTTCATAGCGATGC 60.261 45.833 1.33 0.00 36.26 3.91
3585 6335 4.260538 GCCTTGAACTTCTTCATAGCGATG 60.261 45.833 0.00 0.00 36.26 3.84
3586 6336 3.873952 GCCTTGAACTTCTTCATAGCGAT 59.126 43.478 0.00 0.00 36.26 4.58
3587 6337 3.262420 GCCTTGAACTTCTTCATAGCGA 58.738 45.455 0.00 0.00 36.26 4.93
3588 6338 2.352960 GGCCTTGAACTTCTTCATAGCG 59.647 50.000 0.00 0.00 36.26 4.26
3589 6339 3.127721 GTGGCCTTGAACTTCTTCATAGC 59.872 47.826 3.32 0.00 36.26 2.97
3590 6340 4.583871 AGTGGCCTTGAACTTCTTCATAG 58.416 43.478 3.32 0.00 36.26 2.23
3591 6341 4.287067 AGAGTGGCCTTGAACTTCTTCATA 59.713 41.667 3.32 0.00 36.26 2.15
3592 6342 3.073650 AGAGTGGCCTTGAACTTCTTCAT 59.926 43.478 3.32 0.00 36.26 2.57
3593 6343 2.439507 AGAGTGGCCTTGAACTTCTTCA 59.560 45.455 3.32 0.00 34.39 3.02
3594 6344 3.070748 GAGAGTGGCCTTGAACTTCTTC 58.929 50.000 3.32 0.00 0.00 2.87
3595 6345 2.708325 AGAGAGTGGCCTTGAACTTCTT 59.292 45.455 3.32 0.00 0.00 2.52
3596 6346 2.038295 CAGAGAGTGGCCTTGAACTTCT 59.962 50.000 3.32 2.47 0.00 2.85
3597 6347 2.421619 CAGAGAGTGGCCTTGAACTTC 58.578 52.381 3.32 0.16 0.00 3.01
3598 6348 1.544314 GCAGAGAGTGGCCTTGAACTT 60.544 52.381 3.32 0.00 0.00 2.66
3599 6349 0.036022 GCAGAGAGTGGCCTTGAACT 59.964 55.000 3.32 0.00 0.00 3.01
3600 6350 0.036022 AGCAGAGAGTGGCCTTGAAC 59.964 55.000 3.32 0.00 0.00 3.18
3601 6351 1.276421 GTAGCAGAGAGTGGCCTTGAA 59.724 52.381 3.32 0.00 0.00 2.69
3602 6352 0.898320 GTAGCAGAGAGTGGCCTTGA 59.102 55.000 3.32 0.00 0.00 3.02
3603 6353 0.107945 GGTAGCAGAGAGTGGCCTTG 60.108 60.000 3.32 0.00 0.00 3.61
3604 6354 0.252467 AGGTAGCAGAGAGTGGCCTT 60.252 55.000 3.32 0.00 0.00 4.35
3605 6355 0.686112 GAGGTAGCAGAGAGTGGCCT 60.686 60.000 3.32 0.00 0.00 5.19
3606 6356 1.681486 GGAGGTAGCAGAGAGTGGCC 61.681 65.000 0.00 0.00 0.00 5.36
3607 6357 1.819905 GGAGGTAGCAGAGAGTGGC 59.180 63.158 0.00 0.00 0.00 5.01
3608 6358 2.111162 CGGAGGTAGCAGAGAGTGG 58.889 63.158 0.00 0.00 0.00 4.00
3622 6372 2.553172 CGATCTAGGGTTTCTACCGGAG 59.447 54.545 9.46 0.60 46.04 4.63
3623 6373 2.579873 CGATCTAGGGTTTCTACCGGA 58.420 52.381 9.46 0.00 46.04 5.14
3624 6374 1.612463 CCGATCTAGGGTTTCTACCGG 59.388 57.143 0.00 0.00 46.04 5.28
3625 6375 2.579873 TCCGATCTAGGGTTTCTACCG 58.420 52.381 0.00 0.00 46.04 4.02
3626 6376 4.150359 TCATCCGATCTAGGGTTTCTACC 58.850 47.826 0.00 0.00 44.22 3.18
3627 6377 5.392165 CGATCATCCGATCTAGGGTTTCTAC 60.392 48.000 0.00 0.00 45.11 2.59
3628 6378 4.700692 CGATCATCCGATCTAGGGTTTCTA 59.299 45.833 0.00 0.00 45.11 2.10
3629 6379 3.508012 CGATCATCCGATCTAGGGTTTCT 59.492 47.826 0.00 0.00 45.11 2.52
3630 6380 3.367498 CCGATCATCCGATCTAGGGTTTC 60.367 52.174 0.00 0.00 45.11 2.78
3631 6381 2.563179 CCGATCATCCGATCTAGGGTTT 59.437 50.000 0.00 0.00 45.11 3.27
3632 6382 2.171840 CCGATCATCCGATCTAGGGTT 58.828 52.381 0.00 0.00 45.11 4.11
3633 6383 1.354705 TCCGATCATCCGATCTAGGGT 59.645 52.381 0.00 0.00 45.11 4.34
3634 6384 2.130272 TCCGATCATCCGATCTAGGG 57.870 55.000 0.00 0.00 45.11 3.53
3635 6385 3.066064 GTCATCCGATCATCCGATCTAGG 59.934 52.174 0.00 0.00 45.11 3.02
3636 6386 3.242576 CGTCATCCGATCATCCGATCTAG 60.243 52.174 0.00 0.00 45.11 2.43
3637 6387 2.678336 CGTCATCCGATCATCCGATCTA 59.322 50.000 0.00 0.00 45.11 1.98
3638 6388 1.470494 CGTCATCCGATCATCCGATCT 59.530 52.381 0.00 0.00 45.11 2.75
3639 6389 1.468224 CCGTCATCCGATCATCCGATC 60.468 57.143 0.00 0.00 44.04 3.69
3640 6390 0.528017 CCGTCATCCGATCATCCGAT 59.472 55.000 0.00 0.00 39.56 4.18
3641 6391 1.956802 CCGTCATCCGATCATCCGA 59.043 57.895 0.00 0.00 39.56 4.55
3642 6392 1.734477 GCCGTCATCCGATCATCCG 60.734 63.158 0.00 0.00 39.56 4.18
3643 6393 1.734477 CGCCGTCATCCGATCATCC 60.734 63.158 0.00 0.00 39.56 3.51
3644 6394 1.734477 CCGCCGTCATCCGATCATC 60.734 63.158 0.00 0.00 39.56 2.92
3645 6395 2.340078 CCGCCGTCATCCGATCAT 59.660 61.111 0.00 0.00 39.56 2.45
3646 6396 4.585526 GCCGCCGTCATCCGATCA 62.586 66.667 0.00 0.00 39.56 2.92
3661 6411 3.112709 GAACGACACCAGAGCGCC 61.113 66.667 2.29 0.00 0.00 6.53
3662 6412 3.112709 GGAACGACACCAGAGCGC 61.113 66.667 0.00 0.00 0.00 5.92
3663 6413 1.444553 GAGGAACGACACCAGAGCG 60.445 63.158 0.00 0.00 0.00 5.03
3664 6414 1.079750 GGAGGAACGACACCAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
3665 6415 0.900647 AGGGAGGAACGACACCAGAG 60.901 60.000 0.00 0.00 0.00 3.35
3666 6416 0.471211 AAGGGAGGAACGACACCAGA 60.471 55.000 0.00 0.00 0.00 3.86
3667 6417 0.320771 CAAGGGAGGAACGACACCAG 60.321 60.000 0.00 0.00 0.00 4.00
3668 6418 1.752198 CAAGGGAGGAACGACACCA 59.248 57.895 0.00 0.00 0.00 4.17
3669 6419 1.003718 CCAAGGGAGGAACGACACC 60.004 63.158 0.00 0.00 0.00 4.16
3670 6420 1.003718 CCCAAGGGAGGAACGACAC 60.004 63.158 0.00 0.00 37.50 3.67
3671 6421 3.478780 CCCAAGGGAGGAACGACA 58.521 61.111 0.00 0.00 37.50 4.35
3682 6432 1.000896 AAGAATGACGCCCCCAAGG 60.001 57.895 0.00 0.00 39.47 3.61
3683 6433 1.315257 CCAAGAATGACGCCCCCAAG 61.315 60.000 0.00 0.00 0.00 3.61
3684 6434 1.304052 CCAAGAATGACGCCCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
3685 6435 2.196997 CTCCAAGAATGACGCCCCCA 62.197 60.000 0.00 0.00 0.00 4.96
3686 6436 1.452108 CTCCAAGAATGACGCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
3687 6437 1.452108 CCTCCAAGAATGACGCCCC 60.452 63.158 0.00 0.00 0.00 5.80
3688 6438 0.539986 TACCTCCAAGAATGACGCCC 59.460 55.000 0.00 0.00 0.00 6.13
3689 6439 1.066430 TGTACCTCCAAGAATGACGCC 60.066 52.381 0.00 0.00 0.00 5.68
3690 6440 2.000447 GTGTACCTCCAAGAATGACGC 59.000 52.381 0.00 0.00 0.00 5.19
3691 6441 2.993899 GTGTGTACCTCCAAGAATGACG 59.006 50.000 0.00 0.00 0.00 4.35
3692 6442 2.993899 CGTGTGTACCTCCAAGAATGAC 59.006 50.000 0.00 0.00 0.00 3.06
3693 6443 2.631062 ACGTGTGTACCTCCAAGAATGA 59.369 45.455 0.00 0.00 0.00 2.57
3694 6444 2.736721 CACGTGTGTACCTCCAAGAATG 59.263 50.000 7.58 0.00 0.00 2.67
3695 6445 2.631062 TCACGTGTGTACCTCCAAGAAT 59.369 45.455 16.51 0.00 0.00 2.40
3696 6446 2.033372 TCACGTGTGTACCTCCAAGAA 58.967 47.619 16.51 0.00 0.00 2.52
3697 6447 1.694844 TCACGTGTGTACCTCCAAGA 58.305 50.000 16.51 0.00 0.00 3.02
3698 6448 2.607187 GATCACGTGTGTACCTCCAAG 58.393 52.381 16.51 0.00 0.00 3.61
3699 6449 1.068125 CGATCACGTGTGTACCTCCAA 60.068 52.381 16.51 0.00 34.56 3.53
3700 6450 0.524414 CGATCACGTGTGTACCTCCA 59.476 55.000 16.51 0.00 34.56 3.86
3701 6451 0.806868 TCGATCACGTGTGTACCTCC 59.193 55.000 16.51 0.00 40.69 4.30
3702 6452 1.202154 CCTCGATCACGTGTGTACCTC 60.202 57.143 16.51 3.61 40.69 3.85
3703 6453 0.809385 CCTCGATCACGTGTGTACCT 59.191 55.000 16.51 0.00 40.69 3.08
3704 6454 0.179145 CCCTCGATCACGTGTGTACC 60.179 60.000 16.51 0.78 40.69 3.34
3705 6455 0.806868 TCCCTCGATCACGTGTGTAC 59.193 55.000 16.51 4.87 40.69 2.90
3706 6456 0.806868 GTCCCTCGATCACGTGTGTA 59.193 55.000 16.51 0.00 40.69 2.90
3707 6457 1.585006 GTCCCTCGATCACGTGTGT 59.415 57.895 16.51 5.63 40.69 3.72
3708 6458 1.153823 GGTCCCTCGATCACGTGTG 60.154 63.158 16.51 7.14 40.69 3.82
3709 6459 1.595993 CTGGTCCCTCGATCACGTGT 61.596 60.000 16.51 2.57 40.69 4.49
3710 6460 1.139734 CTGGTCCCTCGATCACGTG 59.860 63.158 9.94 9.94 40.69 4.49
3711 6461 1.001269 TCTGGTCCCTCGATCACGT 60.001 57.895 0.00 0.00 40.69 4.49
3712 6462 1.729470 CCTCTGGTCCCTCGATCACG 61.729 65.000 0.00 0.00 41.26 4.35
3713 6463 0.395862 TCCTCTGGTCCCTCGATCAC 60.396 60.000 0.00 0.00 0.00 3.06
3714 6464 0.395862 GTCCTCTGGTCCCTCGATCA 60.396 60.000 0.00 0.00 0.00 2.92
3715 6465 0.395862 TGTCCTCTGGTCCCTCGATC 60.396 60.000 0.00 0.00 0.00 3.69
3716 6466 0.263172 ATGTCCTCTGGTCCCTCGAT 59.737 55.000 0.00 0.00 0.00 3.59
3717 6467 0.924090 TATGTCCTCTGGTCCCTCGA 59.076 55.000 0.00 0.00 0.00 4.04
3718 6468 2.002505 ATATGTCCTCTGGTCCCTCG 57.997 55.000 0.00 0.00 0.00 4.63
3719 6469 4.779993 AAAATATGTCCTCTGGTCCCTC 57.220 45.455 0.00 0.00 0.00 4.30
3738 6488 1.611491 GAATCACCGCTCCACCAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
3739 6489 1.243902 GAATCACCGCTCCACCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
3740 6490 0.109532 TGAATCACCGCTCCACCAAA 59.890 50.000 0.00 0.00 0.00 3.28
3741 6491 0.327924 ATGAATCACCGCTCCACCAA 59.672 50.000 0.00 0.00 0.00 3.67
3742 6492 0.107703 GATGAATCACCGCTCCACCA 60.108 55.000 0.00 0.00 0.00 4.17
3743 6493 0.815615 GGATGAATCACCGCTCCACC 60.816 60.000 0.00 0.00 0.00 4.61
3744 6494 0.179000 AGGATGAATCACCGCTCCAC 59.821 55.000 3.75 0.00 0.00 4.02
3745 6495 1.412710 GTAGGATGAATCACCGCTCCA 59.587 52.381 3.75 0.00 0.00 3.86
3746 6496 1.412710 TGTAGGATGAATCACCGCTCC 59.587 52.381 0.00 0.00 0.00 4.70
3747 6497 2.159099 TGTGTAGGATGAATCACCGCTC 60.159 50.000 0.00 0.00 0.00 5.03
3748 6498 1.831106 TGTGTAGGATGAATCACCGCT 59.169 47.619 0.00 0.00 0.00 5.52
3749 6499 1.933853 GTGTGTAGGATGAATCACCGC 59.066 52.381 0.00 0.00 0.00 5.68
3750 6500 3.119137 TCAGTGTGTAGGATGAATCACCG 60.119 47.826 0.00 0.00 0.00 4.94
3751 6501 4.471904 TCAGTGTGTAGGATGAATCACC 57.528 45.455 0.00 0.00 0.00 4.02
3752 6502 4.813161 CCATCAGTGTGTAGGATGAATCAC 59.187 45.833 0.00 0.00 40.61 3.06
3753 6503 4.684214 GCCATCAGTGTGTAGGATGAATCA 60.684 45.833 0.00 0.00 40.61 2.57
3754 6504 3.812053 GCCATCAGTGTGTAGGATGAATC 59.188 47.826 0.00 0.00 40.61 2.52
3755 6505 3.742327 CGCCATCAGTGTGTAGGATGAAT 60.742 47.826 0.00 0.00 40.61 2.57
3756 6506 2.418609 CGCCATCAGTGTGTAGGATGAA 60.419 50.000 0.00 0.00 40.61 2.57
3757 6507 1.136891 CGCCATCAGTGTGTAGGATGA 59.863 52.381 0.00 0.00 40.61 2.92
3758 6508 1.136891 TCGCCATCAGTGTGTAGGATG 59.863 52.381 0.00 0.00 38.47 3.51
3759 6509 1.137086 GTCGCCATCAGTGTGTAGGAT 59.863 52.381 0.00 0.00 0.00 3.24
3760 6510 0.530744 GTCGCCATCAGTGTGTAGGA 59.469 55.000 0.00 0.00 0.00 2.94
3761 6511 0.802222 CGTCGCCATCAGTGTGTAGG 60.802 60.000 0.00 0.00 0.00 3.18
3762 6512 0.802222 CCGTCGCCATCAGTGTGTAG 60.802 60.000 0.00 0.00 0.00 2.74
3763 6513 1.214325 CCGTCGCCATCAGTGTGTA 59.786 57.895 0.00 0.00 0.00 2.90
3764 6514 1.888436 ATCCGTCGCCATCAGTGTGT 61.888 55.000 0.00 0.00 0.00 3.72
3765 6515 1.148157 GATCCGTCGCCATCAGTGTG 61.148 60.000 0.00 0.00 0.00 3.82
3766 6516 1.141881 GATCCGTCGCCATCAGTGT 59.858 57.895 0.00 0.00 0.00 3.55
3767 6517 0.179100 AAGATCCGTCGCCATCAGTG 60.179 55.000 5.50 0.00 0.00 3.66
3768 6518 0.179100 CAAGATCCGTCGCCATCAGT 60.179 55.000 5.50 0.00 0.00 3.41
3769 6519 0.103026 TCAAGATCCGTCGCCATCAG 59.897 55.000 5.50 0.00 0.00 2.90
3770 6520 0.179111 GTCAAGATCCGTCGCCATCA 60.179 55.000 5.50 0.00 0.00 3.07
3771 6521 1.209275 CGTCAAGATCCGTCGCCATC 61.209 60.000 0.00 0.00 0.00 3.51
3772 6522 1.226974 CGTCAAGATCCGTCGCCAT 60.227 57.895 0.00 0.00 0.00 4.40
3773 6523 2.180769 CGTCAAGATCCGTCGCCA 59.819 61.111 0.00 0.00 0.00 5.69
3774 6524 2.582498 CCGTCAAGATCCGTCGCC 60.582 66.667 0.00 0.00 0.00 5.54
3775 6525 3.255379 GCCGTCAAGATCCGTCGC 61.255 66.667 0.00 0.00 0.00 5.19
3776 6526 1.226974 ATGCCGTCAAGATCCGTCG 60.227 57.895 0.00 0.00 0.00 5.12
3777 6527 1.154205 CCATGCCGTCAAGATCCGTC 61.154 60.000 0.00 0.00 0.00 4.79
3778 6528 1.153369 CCATGCCGTCAAGATCCGT 60.153 57.895 0.00 0.00 0.00 4.69
3779 6529 2.537560 GCCATGCCGTCAAGATCCG 61.538 63.158 0.00 0.00 0.00 4.18
3780 6530 2.537560 CGCCATGCCGTCAAGATCC 61.538 63.158 0.00 0.00 0.00 3.36
3781 6531 3.017323 CGCCATGCCGTCAAGATC 58.983 61.111 0.00 0.00 0.00 2.75
3782 6532 3.204827 GCGCCATGCCGTCAAGAT 61.205 61.111 0.00 0.00 37.76 2.40
3783 6533 4.695993 TGCGCCATGCCGTCAAGA 62.696 61.111 4.18 0.00 45.60 3.02
3784 6534 4.170062 CTGCGCCATGCCGTCAAG 62.170 66.667 4.18 0.00 45.60 3.02
3791 6541 2.552585 AAATCTGCACTGCGCCATGC 62.553 55.000 22.28 22.28 46.70 4.06
3792 6542 0.800683 CAAATCTGCACTGCGCCATG 60.801 55.000 4.18 3.90 41.33 3.66
3793 6543 1.509463 CAAATCTGCACTGCGCCAT 59.491 52.632 4.18 0.00 41.33 4.40
3794 6544 2.628696 CCAAATCTGCACTGCGCCA 61.629 57.895 4.18 0.00 41.33 5.69
3795 6545 2.180017 CCAAATCTGCACTGCGCC 59.820 61.111 4.18 0.00 41.33 6.53
3796 6546 1.136147 CTCCAAATCTGCACTGCGC 59.864 57.895 0.00 0.00 42.89 6.09
3797 6547 0.877071 AACTCCAAATCTGCACTGCG 59.123 50.000 0.00 0.00 0.00 5.18
3798 6548 1.135859 CGAACTCCAAATCTGCACTGC 60.136 52.381 0.00 0.00 0.00 4.40
3799 6549 1.135859 GCGAACTCCAAATCTGCACTG 60.136 52.381 0.00 0.00 0.00 3.66
3800 6550 1.160137 GCGAACTCCAAATCTGCACT 58.840 50.000 0.00 0.00 0.00 4.40
3801 6551 1.135859 CAGCGAACTCCAAATCTGCAC 60.136 52.381 0.00 0.00 0.00 4.57
3802 6552 1.159285 CAGCGAACTCCAAATCTGCA 58.841 50.000 0.00 0.00 0.00 4.41
3803 6553 1.135859 CACAGCGAACTCCAAATCTGC 60.136 52.381 0.00 0.00 0.00 4.26
3804 6554 1.466167 CCACAGCGAACTCCAAATCTG 59.534 52.381 0.00 0.00 0.00 2.90
3805 6555 1.611673 CCCACAGCGAACTCCAAATCT 60.612 52.381 0.00 0.00 0.00 2.40
3806 6556 0.804989 CCCACAGCGAACTCCAAATC 59.195 55.000 0.00 0.00 0.00 2.17
3807 6557 0.400213 TCCCACAGCGAACTCCAAAT 59.600 50.000 0.00 0.00 0.00 2.32
3808 6558 0.250295 CTCCCACAGCGAACTCCAAA 60.250 55.000 0.00 0.00 0.00 3.28
3809 6559 1.371183 CTCCCACAGCGAACTCCAA 59.629 57.895 0.00 0.00 0.00 3.53
3810 6560 2.583441 CCTCCCACAGCGAACTCCA 61.583 63.158 0.00 0.00 0.00 3.86
3811 6561 1.617947 ATCCTCCCACAGCGAACTCC 61.618 60.000 0.00 0.00 0.00 3.85
3812 6562 0.460987 CATCCTCCCACAGCGAACTC 60.461 60.000 0.00 0.00 0.00 3.01
3813 6563 1.599047 CATCCTCCCACAGCGAACT 59.401 57.895 0.00 0.00 0.00 3.01
3814 6564 1.450312 CCATCCTCCCACAGCGAAC 60.450 63.158 0.00 0.00 0.00 3.95
3815 6565 1.612146 TCCATCCTCCCACAGCGAA 60.612 57.895 0.00 0.00 0.00 4.70
3816 6566 2.038813 TCCATCCTCCCACAGCGA 59.961 61.111 0.00 0.00 0.00 4.93
3817 6567 2.187946 GTCCATCCTCCCACAGCG 59.812 66.667 0.00 0.00 0.00 5.18
3818 6568 1.524482 GAGTCCATCCTCCCACAGC 59.476 63.158 0.00 0.00 0.00 4.40
3819 6569 1.819229 CGAGTCCATCCTCCCACAG 59.181 63.158 0.00 0.00 0.00 3.66
3820 6570 2.359169 GCGAGTCCATCCTCCCACA 61.359 63.158 0.00 0.00 0.00 4.17
3821 6571 2.501610 GCGAGTCCATCCTCCCAC 59.498 66.667 0.00 0.00 0.00 4.61
3822 6572 3.147595 CGCGAGTCCATCCTCCCA 61.148 66.667 0.00 0.00 0.00 4.37
3823 6573 4.593864 GCGCGAGTCCATCCTCCC 62.594 72.222 12.10 0.00 0.00 4.30
3824 6574 3.781770 CTGCGCGAGTCCATCCTCC 62.782 68.421 12.10 0.00 0.00 4.30
3825 6575 2.279120 CTGCGCGAGTCCATCCTC 60.279 66.667 12.10 0.00 0.00 3.71
3826 6576 3.842923 CCTGCGCGAGTCCATCCT 61.843 66.667 12.10 0.00 0.00 3.24
3827 6577 3.781770 CTCCTGCGCGAGTCCATCC 62.782 68.421 12.10 0.00 0.00 3.51
3828 6578 2.279120 CTCCTGCGCGAGTCCATC 60.279 66.667 12.10 0.00 0.00 3.51
3829 6579 3.842923 CCTCCTGCGCGAGTCCAT 61.843 66.667 12.10 0.00 0.00 3.41
3831 6581 4.500116 GTCCTCCTGCGCGAGTCC 62.500 72.222 12.10 0.00 0.00 3.85
3832 6582 4.838486 CGTCCTCCTGCGCGAGTC 62.838 72.222 12.10 0.00 0.00 3.36
3834 6584 4.838486 GTCGTCCTCCTGCGCGAG 62.838 72.222 12.10 3.83 33.90 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.