Multiple sequence alignment - TraesCS2D01G391000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G391000 chr2D 100.000 4899 0 0 1000 5898 498225154 498230052 0.000000e+00 9047
1 TraesCS2D01G391000 chr2D 100.000 732 0 0 1 732 498224155 498224886 0.000000e+00 1352
2 TraesCS2D01G391000 chr2A 93.936 3793 175 29 1027 4782 642907730 642911504 0.000000e+00 5679
3 TraesCS2D01G391000 chr2A 90.045 663 44 12 5239 5892 642911770 642912419 0.000000e+00 839
4 TraesCS2D01G391000 chr2A 90.024 421 21 9 51 461 642906568 642906977 5.240000e-145 525
5 TraesCS2D01G391000 chr2A 93.077 130 4 2 603 732 642907502 642907626 1.010000e-42 185
6 TraesCS2D01G391000 chr2B 93.182 3799 189 37 1027 4782 584691607 584695378 0.000000e+00 5517
7 TraesCS2D01G391000 chr2B 90.146 751 48 13 5158 5898 584719475 584720209 0.000000e+00 953
8 TraesCS2D01G391000 chr2B 94.072 388 15 6 81 463 584690787 584691171 3.060000e-162 582
9 TraesCS2D01G391000 chr2B 99.167 120 1 0 583 702 584691368 584691487 3.580000e-52 217
10 TraesCS2D01G391000 chr3B 78.329 383 77 6 3993 4372 194759246 194759625 5.910000e-60 243
11 TraesCS2D01G391000 chr3A 77.865 384 77 8 3993 4372 154032109 154032488 1.280000e-56 231
12 TraesCS2D01G391000 chr3D 77.023 383 82 6 3993 4372 136402804 136403183 1.290000e-51 215
13 TraesCS2D01G391000 chr1D 75.783 351 68 10 3993 4327 127504622 127504971 1.700000e-35 161
14 TraesCS2D01G391000 chr1A 75.499 351 69 10 3993 4327 186213089 186213438 7.910000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G391000 chr2D 498224155 498230052 5897 False 5199.500000 9047 100.000000 1 5898 2 chr2D.!!$F1 5897
1 TraesCS2D01G391000 chr2A 642906568 642912419 5851 False 1807.000000 5679 91.770500 51 5892 4 chr2A.!!$F1 5841
2 TraesCS2D01G391000 chr2B 584690787 584695378 4591 False 2105.333333 5517 95.473667 81 4782 3 chr2B.!!$F2 4701
3 TraesCS2D01G391000 chr2B 584719475 584720209 734 False 953.000000 953 90.146000 5158 5898 1 chr2B.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.034089 AAGAAATCGCTTGGGGAGGG 60.034 55.0 0.00 0.0 39.55 4.30 F
1530 1999 0.613853 TGGACCTGTTCCTACTCCCG 60.614 60.0 0.00 0.0 46.10 5.14 F
2632 3104 0.391793 GAGGTACCAGCAAGCCTCAC 60.392 60.0 15.94 0.0 45.00 3.51 F
3670 4164 0.330604 ATCTGCACATGCTGGGAGTT 59.669 50.0 10.40 0.0 42.66 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 2115 0.583438 CTTCACCTGCAACAGTCACG 59.417 55.0 0.0 0.0 0.00 4.35 R
3178 3651 0.037877 ATGCTTCAGGCTCAACTGCT 59.962 50.0 0.0 0.0 42.39 4.24 R
3943 4437 0.326264 GGTTGATGGCACTCTGTCCT 59.674 55.0 0.0 0.0 0.00 3.85 R
5199 5728 0.104120 GGTTGGTGTTCAGGGTTTGC 59.896 55.0 0.0 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.203442 ATCCGCCGACGCTAAGAA 58.797 55.556 0.00 0.00 38.22 2.52
18 19 1.514087 ATCCGCCGACGCTAAGAAA 59.486 52.632 0.00 0.00 38.22 2.52
19 20 0.104304 ATCCGCCGACGCTAAGAAAT 59.896 50.000 0.00 0.00 38.22 2.17
20 21 0.526954 TCCGCCGACGCTAAGAAATC 60.527 55.000 0.00 0.00 38.22 2.17
21 22 1.553654 CGCCGACGCTAAGAAATCG 59.446 57.895 0.00 0.00 0.00 3.34
22 23 1.273007 GCCGACGCTAAGAAATCGC 59.727 57.895 0.00 0.00 33.25 4.58
23 24 1.146358 GCCGACGCTAAGAAATCGCT 61.146 55.000 0.00 0.00 33.25 4.93
24 25 1.278238 CCGACGCTAAGAAATCGCTT 58.722 50.000 0.00 0.00 33.25 4.68
25 26 1.005975 CCGACGCTAAGAAATCGCTTG 60.006 52.381 0.00 0.00 33.25 4.01
26 27 1.005975 CGACGCTAAGAAATCGCTTGG 60.006 52.381 0.00 0.00 0.00 3.61
27 28 1.327764 GACGCTAAGAAATCGCTTGGG 59.672 52.381 0.00 0.00 0.00 4.12
28 29 0.657840 CGCTAAGAAATCGCTTGGGG 59.342 55.000 0.00 0.00 34.16 4.96
29 30 1.742411 CGCTAAGAAATCGCTTGGGGA 60.742 52.381 0.00 0.00 40.24 4.81
30 31 1.943340 GCTAAGAAATCGCTTGGGGAG 59.057 52.381 0.00 0.00 0.00 4.30
31 32 2.565841 CTAAGAAATCGCTTGGGGAGG 58.434 52.381 0.00 0.00 0.00 4.30
32 33 0.034089 AAGAAATCGCTTGGGGAGGG 60.034 55.000 0.00 0.00 39.55 4.30
33 34 2.043953 AAATCGCTTGGGGAGGGC 60.044 61.111 0.00 0.00 38.16 5.19
38 39 4.660938 GCTTGGGGAGGGCGTGTT 62.661 66.667 0.00 0.00 0.00 3.32
39 40 2.672996 CTTGGGGAGGGCGTGTTG 60.673 66.667 0.00 0.00 0.00 3.33
40 41 4.278513 TTGGGGAGGGCGTGTTGG 62.279 66.667 0.00 0.00 0.00 3.77
78 79 5.592054 TGCTCTAAGGTTGACAATATCTCG 58.408 41.667 0.00 0.00 0.00 4.04
86 87 6.100004 AGGTTGACAATATCTCGTAACTGTG 58.900 40.000 0.00 0.00 0.00 3.66
114 115 4.499037 AACTTTTCGTCCCATGTAAAGC 57.501 40.909 0.00 0.00 30.84 3.51
434 436 8.770438 AATTCCGCTATCAAGAAGAAGATATC 57.230 34.615 0.00 0.00 0.00 1.63
463 478 8.088365 AGTACAACAATAAATTCCCTTTGCTTC 58.912 33.333 0.00 0.00 0.00 3.86
465 480 7.154656 ACAACAATAAATTCCCTTTGCTTCTC 58.845 34.615 0.00 0.00 0.00 2.87
469 484 7.452813 ACAATAAATTCCCTTTGCTTCTCTCTT 59.547 33.333 0.00 0.00 0.00 2.85
470 485 8.309656 CAATAAATTCCCTTTGCTTCTCTCTTT 58.690 33.333 0.00 0.00 0.00 2.52
471 486 6.737720 AAATTCCCTTTGCTTCTCTCTTTT 57.262 33.333 0.00 0.00 0.00 2.27
472 487 6.737720 AATTCCCTTTGCTTCTCTCTTTTT 57.262 33.333 0.00 0.00 0.00 1.94
504 519 4.442401 AAAAAGAAGGGAAGGGTAACGA 57.558 40.909 0.00 0.00 37.60 3.85
506 521 1.569653 AGAAGGGAAGGGTAACGAGG 58.430 55.000 0.00 0.00 37.60 4.63
507 522 1.078324 AGAAGGGAAGGGTAACGAGGA 59.922 52.381 0.00 0.00 37.60 3.71
508 523 1.206610 GAAGGGAAGGGTAACGAGGAC 59.793 57.143 0.00 0.00 37.60 3.85
510 525 0.967380 GGGAAGGGTAACGAGGACGA 60.967 60.000 0.00 0.00 42.66 4.20
532 662 6.016527 ACGAGAGAAAACATCAGTGTAGTGTA 60.017 38.462 0.00 0.00 37.67 2.90
568 705 1.616628 AGGATGAAAGGGACGGGCT 60.617 57.895 0.00 0.00 0.00 5.19
578 719 4.615834 GACGGGCTAGAGCGAGCG 62.616 72.222 0.00 0.00 43.83 5.03
580 721 4.320928 CGGGCTAGAGCGAGCGAG 62.321 72.222 0.00 0.00 43.83 5.03
581 722 4.639171 GGGCTAGAGCGAGCGAGC 62.639 72.222 0.00 9.95 43.83 5.03
582 723 4.973360 GGCTAGAGCGAGCGAGCG 62.973 72.222 0.00 0.00 43.83 5.03
583 724 3.943034 GCTAGAGCGAGCGAGCGA 61.943 66.667 0.00 0.00 43.00 4.93
584 725 2.248140 CTAGAGCGAGCGAGCGAG 59.752 66.667 1.41 0.00 43.00 5.03
585 726 3.855209 CTAGAGCGAGCGAGCGAGC 62.855 68.421 9.12 9.12 43.00 5.03
702 1123 2.344441 GCCGCTTTCCGCTTTATTTTTC 59.656 45.455 0.00 0.00 36.13 2.29
703 1124 3.570559 CCGCTTTCCGCTTTATTTTTCA 58.429 40.909 0.00 0.00 36.13 2.69
704 1125 4.173256 CCGCTTTCCGCTTTATTTTTCAT 58.827 39.130 0.00 0.00 36.13 2.57
707 1128 6.008875 CGCTTTCCGCTTTATTTTTCATTTG 58.991 36.000 0.00 0.00 36.13 2.32
716 1137 9.368921 CGCTTTATTTTTCATTTGTTTTCTTCC 57.631 29.630 0.00 0.00 0.00 3.46
1088 1525 3.461773 GCTGGGACTGGCGCTAGA 61.462 66.667 28.72 3.47 0.00 2.43
1144 1599 3.394836 GAGGAGCCGGCCAAGAGT 61.395 66.667 26.15 1.92 0.00 3.24
1246 1703 9.571810 TGATTGATTATTTTCCTTCGATTTGTG 57.428 29.630 0.00 0.00 0.00 3.33
1257 1714 3.347958 TCGATTTGTGTCCTTGTTTGC 57.652 42.857 0.00 0.00 0.00 3.68
1351 1815 2.440599 GGGGTGGGTGCATTCTGT 59.559 61.111 0.00 0.00 0.00 3.41
1362 1826 3.134458 GTGCATTCTGTGTCTATAGGCC 58.866 50.000 0.97 0.00 0.00 5.19
1387 1853 0.733909 GATTCTGCTGCGGTTTTGGC 60.734 55.000 8.55 0.00 0.00 4.52
1530 1999 0.613853 TGGACCTGTTCCTACTCCCG 60.614 60.000 0.00 0.00 46.10 5.14
1553 2022 0.668535 GTCTGCTTTCGCTGGGTTTT 59.331 50.000 0.00 0.00 35.96 2.43
1646 2115 4.433615 TCGTCTCCTTAATCAATCTGTGC 58.566 43.478 0.00 0.00 0.00 4.57
1701 2170 2.497792 ATTTGCCATCCCGGTGCAGA 62.498 55.000 0.00 0.00 36.21 4.26
1703 2172 2.825836 GCCATCCCGGTGCAGAAG 60.826 66.667 0.00 0.00 36.97 2.85
1718 2187 2.027625 GAAGTCCTGCCGTCGTTGG 61.028 63.158 0.00 0.00 0.00 3.77
1719 2188 2.710724 GAAGTCCTGCCGTCGTTGGT 62.711 60.000 0.00 0.00 0.00 3.67
1720 2189 2.989055 AAGTCCTGCCGTCGTTGGTG 62.989 60.000 0.00 0.00 0.00 4.17
1721 2190 4.980805 TCCTGCCGTCGTTGGTGC 62.981 66.667 0.00 0.00 0.00 5.01
1762 2231 2.380064 TGGGATTTGCCTTGTCTTGT 57.620 45.000 0.00 0.00 36.66 3.16
1780 2249 1.600636 TTCGGCTCTTGCTTGGTGG 60.601 57.895 0.00 0.00 39.59 4.61
1783 2252 1.455383 CGGCTCTTGCTTGGTGGTTT 61.455 55.000 0.00 0.00 39.59 3.27
1814 2283 2.698855 TGCTAAGGTCTGAATGGAGC 57.301 50.000 0.00 0.00 0.00 4.70
1909 2378 0.534203 TGCCGATTCCGATAAAGGCC 60.534 55.000 0.00 0.00 43.56 5.19
1966 2435 6.615667 GAGAAGGATCTGCCAGATGATGGG 62.616 54.167 12.92 0.00 42.33 4.00
2059 2528 3.152341 CCTGGAGCCAATTGATATGGAC 58.848 50.000 7.12 0.00 40.56 4.02
2083 2552 0.454600 TGAAGACGGTCTATGTCGCC 59.545 55.000 11.71 0.00 41.24 5.54
2128 2597 2.357517 GTGTGTCTGGTGCGAGGG 60.358 66.667 0.00 0.00 0.00 4.30
2293 2762 1.972223 ACGCTCGTCACAGGCTACT 60.972 57.895 0.00 0.00 0.00 2.57
2335 2804 0.827368 ATTCGGAGGAGAAGGACTGC 59.173 55.000 0.00 0.00 37.22 4.40
2338 2807 1.216710 GGAGGAGAAGGACTGCGTG 59.783 63.158 0.00 0.00 41.86 5.34
2383 2852 0.607489 GCAATGTCAGCCCTCACAGT 60.607 55.000 0.00 0.00 0.00 3.55
2386 2855 1.944177 ATGTCAGCCCTCACAGTAGT 58.056 50.000 0.00 0.00 0.00 2.73
2392 2861 4.100189 GTCAGCCCTCACAGTAGTATTGAT 59.900 45.833 0.00 0.00 0.00 2.57
2401 2870 5.838521 TCACAGTAGTATTGATAGCATGGGA 59.161 40.000 0.00 0.00 0.00 4.37
2485 2957 0.727398 GCGGAACCATGCTTACTGTC 59.273 55.000 0.00 0.00 0.00 3.51
2632 3104 0.391793 GAGGTACCAGCAAGCCTCAC 60.392 60.000 15.94 0.00 45.00 3.51
2641 3113 1.527433 GCAAGCCTCACAAGGGGAAC 61.527 60.000 0.00 0.00 43.58 3.62
2644 3116 1.671379 GCCTCACAAGGGGAACGAC 60.671 63.158 0.00 0.00 43.58 4.34
2758 3230 3.181475 ACATTGGCAGTGTATACCTCTCG 60.181 47.826 14.46 0.00 0.00 4.04
2764 3236 3.881688 GCAGTGTATACCTCTCGGAGTTA 59.118 47.826 4.69 0.00 0.00 2.24
2797 3269 3.983344 GGTGCTACTTTGCAATGAAAGTG 59.017 43.478 18.35 6.69 44.22 3.16
2926 3398 7.102346 CACATTTTGAGACTGATAGGTTCTCT 58.898 38.462 0.00 0.00 0.00 3.10
3042 3515 7.992754 ATATTAATCATGAGCCAGTTCCTTC 57.007 36.000 0.09 0.00 0.00 3.46
3043 3516 2.322355 ATCATGAGCCAGTTCCTTCG 57.678 50.000 0.09 0.00 0.00 3.79
3051 3524 4.454504 TGAGCCAGTTCCTTCGAAAAATAC 59.545 41.667 0.00 0.00 0.00 1.89
3058 3531 7.414436 CAGTTCCTTCGAAAAATACAACTTGA 58.586 34.615 0.00 0.00 0.00 3.02
3139 3612 8.006298 TCCATTTGCTACCAATTTAATGTAGG 57.994 34.615 5.13 0.00 34.03 3.18
3216 3689 4.022416 AGCATAATTTCCGAACTGTGCAAA 60.022 37.500 11.46 0.00 34.01 3.68
3309 3797 1.301677 GGAAGCAGCCAGTGTAGTGC 61.302 60.000 0.00 1.33 36.10 4.40
3323 3811 0.901114 TAGTGCTGCCCGGTTACTCA 60.901 55.000 0.00 0.00 0.00 3.41
3328 3816 2.349755 GCCCGGTTACTCAGGCAA 59.650 61.111 0.00 0.00 45.07 4.52
3340 3828 6.587608 GGTTACTCAGGCAAAATTTCTGAATG 59.412 38.462 8.81 2.76 37.13 2.67
3341 3829 4.563061 ACTCAGGCAAAATTTCTGAATGC 58.437 39.130 8.81 6.43 37.13 3.56
3381 3869 3.079578 AGATGGTGTGCAGAGAAATGTG 58.920 45.455 0.00 0.00 0.00 3.21
3390 3878 4.614284 GTGCAGAGAAATGTGATTTGTTCG 59.386 41.667 0.00 0.00 31.47 3.95
3397 3885 8.230486 AGAGAAATGTGATTTGTTCGAATGTAC 58.770 33.333 0.00 0.00 31.47 2.90
3470 3959 4.691685 GGCAGCATGTTGAAATGATTTTGA 59.308 37.500 14.38 0.00 39.31 2.69
3526 4015 7.751768 GCTTTAGCATCTTACCCTTCAATAT 57.248 36.000 0.00 0.00 41.59 1.28
3527 4016 8.171164 GCTTTAGCATCTTACCCTTCAATATT 57.829 34.615 0.00 0.00 41.59 1.28
3554 4048 9.073475 AGATCTTTCGTATTCAGTAGCTTATCT 57.927 33.333 0.00 0.00 0.00 1.98
3555 4049 9.685828 GATCTTTCGTATTCAGTAGCTTATCTT 57.314 33.333 0.00 0.00 0.00 2.40
3586 4080 2.225491 TGGCTAGTTGCAACTAAAAGCG 59.775 45.455 31.64 23.93 45.15 4.68
3592 4086 1.593196 TGCAACTAAAAGCGCTGACT 58.407 45.000 12.58 0.01 0.00 3.41
3596 4090 2.688364 ACTAAAAGCGCTGACTTTGC 57.312 45.000 12.58 0.00 39.76 3.68
3606 4100 1.788258 CTGACTTTGCGCTCTCTGAA 58.212 50.000 9.73 0.00 0.00 3.02
3649 4143 6.701340 TGCAGAAGTTCTTCTAGCTATTGAA 58.299 36.000 23.18 0.00 0.00 2.69
3670 4164 0.330604 ATCTGCACATGCTGGGAGTT 59.669 50.000 10.40 0.00 42.66 3.01
3773 4267 2.568956 AGATGTGCAGTGTCACCTACAT 59.431 45.455 13.89 13.89 41.10 2.29
3802 4296 2.352960 GACATCGGCCTTTGATTCTGAC 59.647 50.000 0.00 0.00 0.00 3.51
3859 4353 1.293924 CTTGCATGGAGCCTACTTCG 58.706 55.000 0.00 0.00 44.83 3.79
3886 4380 5.252547 TGTATTCAGCCAGCTTGTTTCATA 58.747 37.500 0.00 0.00 0.00 2.15
3943 4437 3.259374 CCAGAAAGACAAGGTCTGAGCTA 59.741 47.826 10.13 0.00 42.59 3.32
3988 4482 2.383527 GCTCCTCGCAGAACCAACG 61.384 63.158 0.00 0.00 38.92 4.10
4147 4641 3.175710 AAGGGGTCAGGCAACCGT 61.176 61.111 3.37 0.00 40.46 4.83
4562 5056 4.351192 GTCAGTGTGGTGTTGTGATTTTC 58.649 43.478 0.00 0.00 0.00 2.29
4644 5140 6.992063 AATTAGCTAGGTGTGTTTGATCTG 57.008 37.500 4.27 0.00 0.00 2.90
4648 5144 3.064545 GCTAGGTGTGTTTGATCTGCATC 59.935 47.826 0.00 0.00 0.00 3.91
4649 5145 3.144657 AGGTGTGTTTGATCTGCATCA 57.855 42.857 0.00 0.00 37.24 3.07
4759 5256 1.212751 GGGTTTTGCGCCATCACTC 59.787 57.895 4.18 0.00 0.00 3.51
4762 5259 2.976840 TTTTGCGCCATCACTCGGC 61.977 57.895 4.18 0.00 46.62 5.54
4782 5279 1.303309 GAATCGGGCATTCTGACTGG 58.697 55.000 0.00 0.00 38.36 4.00
4787 5316 2.503765 TCGGGCATTCTGACTGGATTTA 59.496 45.455 0.00 0.00 30.96 1.40
4789 5318 3.694072 CGGGCATTCTGACTGGATTTAAA 59.306 43.478 0.00 0.00 0.00 1.52
4824 5353 9.509956 TTGTAGCTGGTAAATGTATTTTAGTGT 57.490 29.630 0.00 0.00 30.46 3.55
4835 5364 5.933790 TGTATTTTAGTGTTGATTGGTCGC 58.066 37.500 0.00 0.00 0.00 5.19
4838 5367 2.380084 TAGTGTTGATTGGTCGCTCC 57.620 50.000 0.00 0.00 0.00 4.70
4844 5373 3.244422 TGTTGATTGGTCGCTCCTTTAGT 60.244 43.478 0.00 0.00 37.07 2.24
4845 5374 4.020928 TGTTGATTGGTCGCTCCTTTAGTA 60.021 41.667 0.00 0.00 37.07 1.82
4846 5375 5.116882 GTTGATTGGTCGCTCCTTTAGTAT 58.883 41.667 0.00 0.00 37.07 2.12
4847 5376 4.693283 TGATTGGTCGCTCCTTTAGTATG 58.307 43.478 0.00 0.00 37.07 2.39
4848 5377 4.161565 TGATTGGTCGCTCCTTTAGTATGT 59.838 41.667 0.00 0.00 37.07 2.29
4849 5378 4.546829 TTGGTCGCTCCTTTAGTATGTT 57.453 40.909 0.00 0.00 37.07 2.71
4851 5380 5.664294 TGGTCGCTCCTTTAGTATGTTTA 57.336 39.130 0.00 0.00 37.07 2.01
4852 5381 6.229936 TGGTCGCTCCTTTAGTATGTTTAT 57.770 37.500 0.00 0.00 37.07 1.40
4853 5382 6.646267 TGGTCGCTCCTTTAGTATGTTTATT 58.354 36.000 0.00 0.00 37.07 1.40
4858 5387 9.880157 TCGCTCCTTTAGTATGTTTATTTTAGT 57.120 29.630 0.00 0.00 0.00 2.24
4859 5388 9.916397 CGCTCCTTTAGTATGTTTATTTTAGTG 57.084 33.333 0.00 0.00 0.00 2.74
4872 5401 9.810545 TGTTTATTTTAGTGAGTTTTCCCTTTG 57.189 29.630 0.00 0.00 0.00 2.77
4875 5404 7.654022 ATTTTAGTGAGTTTTCCCTTTGACA 57.346 32.000 0.00 0.00 0.00 3.58
4876 5405 7.469537 TTTTAGTGAGTTTTCCCTTTGACAA 57.530 32.000 0.00 0.00 0.00 3.18
4877 5406 7.469537 TTTAGTGAGTTTTCCCTTTGACAAA 57.530 32.000 0.00 0.00 0.00 2.83
4878 5407 5.582689 AGTGAGTTTTCCCTTTGACAAAG 57.417 39.130 19.20 19.20 38.24 2.77
4895 5424 3.240069 CAAAGGAAAAAGAGATGCAGCG 58.760 45.455 0.00 0.00 0.00 5.18
4896 5425 2.479566 AGGAAAAAGAGATGCAGCGA 57.520 45.000 0.00 0.00 0.00 4.93
4897 5426 2.354259 AGGAAAAAGAGATGCAGCGAG 58.646 47.619 0.00 0.00 0.00 5.03
4898 5427 2.079925 GGAAAAAGAGATGCAGCGAGT 58.920 47.619 0.00 0.00 0.00 4.18
4899 5428 2.159599 GGAAAAAGAGATGCAGCGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
4904 5433 2.580962 AGAGATGCAGCGAGTGATCTA 58.419 47.619 0.00 0.00 0.00 1.98
4907 5436 4.395854 AGAGATGCAGCGAGTGATCTATAG 59.604 45.833 0.00 0.00 0.00 1.31
4910 5439 3.481453 TGCAGCGAGTGATCTATAGACT 58.519 45.455 4.10 0.00 0.00 3.24
4911 5440 3.885901 TGCAGCGAGTGATCTATAGACTT 59.114 43.478 4.10 0.00 0.00 3.01
4924 5453 9.319060 TGATCTATAGACTTTGGAATAGCTGAT 57.681 33.333 4.10 0.00 0.00 2.90
4930 5459 7.798596 AGACTTTGGAATAGCTGATTATGTG 57.201 36.000 0.00 0.00 0.00 3.21
4932 5461 7.831193 AGACTTTGGAATAGCTGATTATGTGTT 59.169 33.333 0.00 0.00 0.00 3.32
4939 5468 9.185192 GGAATAGCTGATTATGTGTTTATTTGC 57.815 33.333 0.00 0.00 0.00 3.68
4940 5469 9.956720 GAATAGCTGATTATGTGTTTATTTGCT 57.043 29.630 0.00 0.00 0.00 3.91
4941 5470 9.956720 AATAGCTGATTATGTGTTTATTTGCTC 57.043 29.630 0.00 0.00 0.00 4.26
4942 5471 7.636150 AGCTGATTATGTGTTTATTTGCTCT 57.364 32.000 0.00 0.00 0.00 4.09
4943 5472 8.737168 AGCTGATTATGTGTTTATTTGCTCTA 57.263 30.769 0.00 0.00 0.00 2.43
4944 5473 8.834465 AGCTGATTATGTGTTTATTTGCTCTAG 58.166 33.333 0.00 0.00 0.00 2.43
4945 5474 7.589221 GCTGATTATGTGTTTATTTGCTCTAGC 59.411 37.037 0.00 0.00 42.50 3.42
4946 5475 8.737168 TGATTATGTGTTTATTTGCTCTAGCT 57.263 30.769 3.26 0.00 42.66 3.32
4947 5476 8.615211 TGATTATGTGTTTATTTGCTCTAGCTG 58.385 33.333 0.00 0.00 42.66 4.24
4948 5477 5.824904 ATGTGTTTATTTGCTCTAGCTGG 57.175 39.130 0.00 0.00 42.66 4.85
4949 5478 4.651778 TGTGTTTATTTGCTCTAGCTGGT 58.348 39.130 0.00 0.00 42.66 4.00
4950 5479 5.070001 TGTGTTTATTTGCTCTAGCTGGTT 58.930 37.500 0.00 0.00 42.66 3.67
4951 5480 6.234920 TGTGTTTATTTGCTCTAGCTGGTTA 58.765 36.000 0.00 0.00 42.66 2.85
4952 5481 6.884295 TGTGTTTATTTGCTCTAGCTGGTTAT 59.116 34.615 0.00 0.00 42.66 1.89
4953 5482 8.044309 TGTGTTTATTTGCTCTAGCTGGTTATA 58.956 33.333 0.00 0.00 42.66 0.98
4954 5483 9.057089 GTGTTTATTTGCTCTAGCTGGTTATAT 57.943 33.333 0.00 0.00 42.66 0.86
4955 5484 9.627123 TGTTTATTTGCTCTAGCTGGTTATATT 57.373 29.630 0.00 0.00 42.66 1.28
4957 5486 9.845740 TTTATTTGCTCTAGCTGGTTATATTCA 57.154 29.630 0.00 0.00 42.66 2.57
4958 5487 7.976135 ATTTGCTCTAGCTGGTTATATTCAG 57.024 36.000 0.00 0.00 42.66 3.02
4959 5488 5.474578 TGCTCTAGCTGGTTATATTCAGG 57.525 43.478 0.00 0.00 42.66 3.86
4960 5489 4.901849 TGCTCTAGCTGGTTATATTCAGGT 59.098 41.667 0.00 10.84 43.13 4.00
4961 5490 5.221521 TGCTCTAGCTGGTTATATTCAGGTG 60.222 44.000 14.12 7.45 41.16 4.00
4962 5491 5.221541 GCTCTAGCTGGTTATATTCAGGTGT 60.222 44.000 14.12 0.00 41.16 4.16
4963 5492 6.686632 GCTCTAGCTGGTTATATTCAGGTGTT 60.687 42.308 14.12 0.00 41.16 3.32
4964 5493 6.582636 TCTAGCTGGTTATATTCAGGTGTTG 58.417 40.000 14.12 7.45 41.16 3.33
4965 5494 5.435686 AGCTGGTTATATTCAGGTGTTGA 57.564 39.130 6.71 0.00 39.81 3.18
4966 5495 6.006275 AGCTGGTTATATTCAGGTGTTGAT 57.994 37.500 6.71 0.00 39.81 2.57
4967 5496 5.824624 AGCTGGTTATATTCAGGTGTTGATG 59.175 40.000 6.71 0.00 39.81 3.07
4968 5497 5.822519 GCTGGTTATATTCAGGTGTTGATGA 59.177 40.000 5.39 0.00 35.27 2.92
4973 5502 9.520204 GGTTATATTCAGGTGTTGATGAAATTG 57.480 33.333 0.00 0.00 38.80 2.32
4974 5503 9.520204 GTTATATTCAGGTGTTGATGAAATTGG 57.480 33.333 0.00 0.00 38.80 3.16
4975 5504 7.722949 ATATTCAGGTGTTGATGAAATTGGT 57.277 32.000 0.00 0.00 38.80 3.67
4977 5506 6.968263 TTCAGGTGTTGATGAAATTGGTTA 57.032 33.333 0.00 0.00 35.27 2.85
4990 5519 3.983044 ATTGGTTAAGCTCGAGAACCT 57.017 42.857 26.10 9.98 42.65 3.50
4995 5524 3.186613 GGTTAAGCTCGAGAACCTGTTTG 59.813 47.826 21.42 0.00 39.67 2.93
4999 5528 1.795286 GCTCGAGAACCTGTTTGAGTG 59.205 52.381 18.75 0.00 0.00 3.51
5000 5529 2.408050 CTCGAGAACCTGTTTGAGTGG 58.592 52.381 6.58 0.00 0.00 4.00
5002 5531 2.632996 TCGAGAACCTGTTTGAGTGGAT 59.367 45.455 0.00 0.00 0.00 3.41
5003 5532 3.071023 TCGAGAACCTGTTTGAGTGGATT 59.929 43.478 0.00 0.00 0.00 3.01
5004 5533 4.282449 TCGAGAACCTGTTTGAGTGGATTA 59.718 41.667 0.00 0.00 0.00 1.75
5007 5536 5.501156 AGAACCTGTTTGAGTGGATTATCC 58.499 41.667 3.91 3.91 36.96 2.59
5009 5538 3.517901 ACCTGTTTGAGTGGATTATCCGA 59.482 43.478 6.77 0.00 40.17 4.55
5012 5541 5.414789 TGTTTGAGTGGATTATCCGAAGA 57.585 39.130 6.77 0.00 40.17 2.87
5013 5542 5.800296 TGTTTGAGTGGATTATCCGAAGAA 58.200 37.500 6.77 0.00 40.17 2.52
5014 5543 5.642063 TGTTTGAGTGGATTATCCGAAGAAC 59.358 40.000 6.77 8.18 40.17 3.01
5015 5544 5.677319 TTGAGTGGATTATCCGAAGAACT 57.323 39.130 6.77 3.90 40.17 3.01
5016 5545 5.011090 TGAGTGGATTATCCGAAGAACTG 57.989 43.478 6.77 0.00 40.17 3.16
5017 5546 3.798202 AGTGGATTATCCGAAGAACTGC 58.202 45.455 6.77 0.00 40.17 4.40
5018 5547 3.197766 AGTGGATTATCCGAAGAACTGCA 59.802 43.478 6.77 0.00 40.17 4.41
5019 5548 3.557595 GTGGATTATCCGAAGAACTGCAG 59.442 47.826 13.48 13.48 40.17 4.41
5021 5550 4.101585 TGGATTATCCGAAGAACTGCAGAT 59.898 41.667 23.35 9.01 40.17 2.90
5023 5552 5.178438 GGATTATCCGAAGAACTGCAGATTC 59.822 44.000 23.35 19.05 0.00 2.52
5024 5553 2.386661 TCCGAAGAACTGCAGATTCC 57.613 50.000 23.35 6.02 0.00 3.01
5025 5554 1.066143 TCCGAAGAACTGCAGATTCCC 60.066 52.381 23.35 13.02 0.00 3.97
5026 5555 1.373570 CGAAGAACTGCAGATTCCCC 58.626 55.000 23.35 12.71 0.00 4.81
5028 5557 0.693049 AAGAACTGCAGATTCCCCGT 59.307 50.000 23.35 2.10 0.00 5.28
5029 5558 0.693049 AGAACTGCAGATTCCCCGTT 59.307 50.000 23.35 1.33 0.00 4.44
5030 5559 1.073923 AGAACTGCAGATTCCCCGTTT 59.926 47.619 23.35 0.00 0.00 3.60
5031 5560 1.200020 GAACTGCAGATTCCCCGTTTG 59.800 52.381 23.35 0.00 0.00 2.93
5032 5561 0.400213 ACTGCAGATTCCCCGTTTGA 59.600 50.000 23.35 0.00 0.00 2.69
5034 5563 1.402968 CTGCAGATTCCCCGTTTGATG 59.597 52.381 8.42 0.00 0.00 3.07
5035 5564 1.271871 TGCAGATTCCCCGTTTGATGT 60.272 47.619 0.00 0.00 0.00 3.06
5036 5565 1.818674 GCAGATTCCCCGTTTGATGTT 59.181 47.619 0.00 0.00 0.00 2.71
5037 5566 2.231235 GCAGATTCCCCGTTTGATGTTT 59.769 45.455 0.00 0.00 0.00 2.83
5040 5569 2.074729 TTCCCCGTTTGATGTTTGGT 57.925 45.000 0.00 0.00 0.00 3.67
5041 5570 2.953284 TCCCCGTTTGATGTTTGGTA 57.047 45.000 0.00 0.00 0.00 3.25
5042 5571 3.225177 TCCCCGTTTGATGTTTGGTAA 57.775 42.857 0.00 0.00 0.00 2.85
5043 5572 3.563223 TCCCCGTTTGATGTTTGGTAAA 58.437 40.909 0.00 0.00 0.00 2.01
5045 5574 4.404715 TCCCCGTTTGATGTTTGGTAAAAA 59.595 37.500 0.00 0.00 0.00 1.94
5063 5592 4.492791 AAAAAGGCGCAGTTTATTACGT 57.507 36.364 10.83 0.00 0.00 3.57
5066 5595 3.515330 AGGCGCAGTTTATTACGTACT 57.485 42.857 10.83 0.00 0.00 2.73
5067 5596 4.637483 AGGCGCAGTTTATTACGTACTA 57.363 40.909 10.83 0.00 0.00 1.82
5069 5598 4.096984 AGGCGCAGTTTATTACGTACTACT 59.903 41.667 10.83 0.00 0.00 2.57
5070 5599 4.205792 GGCGCAGTTTATTACGTACTACTG 59.794 45.833 10.83 15.70 36.85 2.74
5071 5600 4.205792 GCGCAGTTTATTACGTACTACTGG 59.794 45.833 19.01 13.34 34.92 4.00
5072 5601 5.335127 CGCAGTTTATTACGTACTACTGGT 58.665 41.667 19.01 0.00 34.92 4.00
5073 5602 6.486248 CGCAGTTTATTACGTACTACTGGTA 58.514 40.000 19.01 0.00 34.92 3.25
5074 5603 7.134815 CGCAGTTTATTACGTACTACTGGTAT 58.865 38.462 19.01 3.54 34.92 2.73
5075 5604 8.282592 CGCAGTTTATTACGTACTACTGGTATA 58.717 37.037 19.01 2.77 34.92 1.47
5076 5605 9.950680 GCAGTTTATTACGTACTACTGGTATAA 57.049 33.333 19.01 7.46 34.92 0.98
5084 5613 7.693969 ACGTACTACTGGTATAAAGTTGACT 57.306 36.000 0.00 0.00 32.56 3.41
5085 5614 7.533426 ACGTACTACTGGTATAAAGTTGACTG 58.467 38.462 0.00 0.00 32.56 3.51
5086 5615 7.391554 ACGTACTACTGGTATAAAGTTGACTGA 59.608 37.037 0.00 0.00 32.56 3.41
5087 5616 8.239314 CGTACTACTGGTATAAAGTTGACTGAA 58.761 37.037 5.62 0.00 32.56 3.02
5088 5617 9.918630 GTACTACTGGTATAAAGTTGACTGAAA 57.081 33.333 5.62 0.00 32.56 2.69
5089 5618 8.828688 ACTACTGGTATAAAGTTGACTGAAAC 57.171 34.615 5.62 0.00 0.00 2.78
5090 5619 8.648693 ACTACTGGTATAAAGTTGACTGAAACT 58.351 33.333 5.62 0.00 42.21 2.66
5091 5620 7.964604 ACTGGTATAAAGTTGACTGAAACTC 57.035 36.000 2.02 0.00 39.48 3.01
5092 5621 6.645415 ACTGGTATAAAGTTGACTGAAACTCG 59.355 38.462 2.02 0.00 39.48 4.18
5093 5622 5.407387 TGGTATAAAGTTGACTGAAACTCGC 59.593 40.000 2.02 0.00 39.48 5.03
5094 5623 5.163884 GGTATAAAGTTGACTGAAACTCGCC 60.164 44.000 2.02 0.00 39.48 5.54
5095 5624 2.622064 AAGTTGACTGAAACTCGCCT 57.378 45.000 2.02 0.00 39.48 5.52
5096 5625 3.746045 AAGTTGACTGAAACTCGCCTA 57.254 42.857 2.02 0.00 39.48 3.93
5097 5626 3.746045 AGTTGACTGAAACTCGCCTAA 57.254 42.857 0.00 0.00 35.44 2.69
5098 5627 3.654414 AGTTGACTGAAACTCGCCTAAG 58.346 45.455 0.00 0.00 35.44 2.18
5099 5628 3.321111 AGTTGACTGAAACTCGCCTAAGA 59.679 43.478 0.00 0.00 35.44 2.10
5100 5629 4.056050 GTTGACTGAAACTCGCCTAAGAA 58.944 43.478 0.00 0.00 0.00 2.52
5101 5630 4.330944 TGACTGAAACTCGCCTAAGAAA 57.669 40.909 0.00 0.00 0.00 2.52
5102 5631 4.699637 TGACTGAAACTCGCCTAAGAAAA 58.300 39.130 0.00 0.00 0.00 2.29
5103 5632 5.120399 TGACTGAAACTCGCCTAAGAAAAA 58.880 37.500 0.00 0.00 0.00 1.94
5126 5655 6.524101 AAAAAGTTGCCTGAAACTAACTGA 57.476 33.333 0.00 0.00 39.48 3.41
5127 5656 6.715347 AAAAGTTGCCTGAAACTAACTGAT 57.285 33.333 0.00 0.00 39.48 2.90
5128 5657 5.948992 AAGTTGCCTGAAACTAACTGATC 57.051 39.130 0.00 0.00 39.48 2.92
5129 5658 5.234466 AGTTGCCTGAAACTAACTGATCT 57.766 39.130 0.00 0.00 38.62 2.75
5130 5659 5.625150 AGTTGCCTGAAACTAACTGATCTT 58.375 37.500 0.00 0.00 38.62 2.40
5131 5660 6.769512 AGTTGCCTGAAACTAACTGATCTTA 58.230 36.000 0.00 0.00 38.62 2.10
5132 5661 6.876257 AGTTGCCTGAAACTAACTGATCTTAG 59.124 38.462 0.00 0.00 38.62 2.18
5133 5662 5.178797 TGCCTGAAACTAACTGATCTTAGC 58.821 41.667 0.00 0.00 0.00 3.09
5134 5663 4.572795 GCCTGAAACTAACTGATCTTAGCC 59.427 45.833 0.00 0.00 0.00 3.93
5135 5664 4.806247 CCTGAAACTAACTGATCTTAGCCG 59.194 45.833 0.00 0.00 0.00 5.52
5136 5665 5.401531 TGAAACTAACTGATCTTAGCCGT 57.598 39.130 0.00 0.00 0.00 5.68
5137 5666 5.408356 TGAAACTAACTGATCTTAGCCGTC 58.592 41.667 0.00 0.00 0.00 4.79
5138 5667 4.388378 AACTAACTGATCTTAGCCGTCC 57.612 45.455 0.00 0.00 0.00 4.79
5139 5668 3.362706 ACTAACTGATCTTAGCCGTCCA 58.637 45.455 0.00 0.00 0.00 4.02
5140 5669 3.961408 ACTAACTGATCTTAGCCGTCCAT 59.039 43.478 0.00 0.00 0.00 3.41
5141 5670 5.138276 ACTAACTGATCTTAGCCGTCCATA 58.862 41.667 0.00 0.00 0.00 2.74
5142 5671 5.775701 ACTAACTGATCTTAGCCGTCCATAT 59.224 40.000 0.00 0.00 0.00 1.78
5143 5672 5.552870 AACTGATCTTAGCCGTCCATATT 57.447 39.130 0.00 0.00 0.00 1.28
5144 5673 4.887748 ACTGATCTTAGCCGTCCATATTG 58.112 43.478 0.00 0.00 0.00 1.90
5145 5674 4.588951 ACTGATCTTAGCCGTCCATATTGA 59.411 41.667 0.00 0.00 0.00 2.57
5146 5675 5.139435 TGATCTTAGCCGTCCATATTGAG 57.861 43.478 0.00 0.00 0.00 3.02
5147 5676 4.021104 TGATCTTAGCCGTCCATATTGAGG 60.021 45.833 0.00 0.00 0.00 3.86
5148 5677 2.632996 TCTTAGCCGTCCATATTGAGGG 59.367 50.000 10.44 10.44 42.01 4.30
5149 5678 2.391926 TAGCCGTCCATATTGAGGGA 57.608 50.000 17.33 0.00 41.73 4.20
5150 5679 1.051812 AGCCGTCCATATTGAGGGAG 58.948 55.000 17.33 0.00 41.73 4.30
5151 5680 0.759346 GCCGTCCATATTGAGGGAGT 59.241 55.000 17.33 0.00 41.73 3.85
5152 5681 1.141053 GCCGTCCATATTGAGGGAGTT 59.859 52.381 17.33 0.00 41.73 3.01
5153 5682 2.421529 GCCGTCCATATTGAGGGAGTTT 60.422 50.000 17.33 0.00 41.73 2.66
5154 5683 3.181458 GCCGTCCATATTGAGGGAGTTTA 60.181 47.826 17.33 0.00 41.73 2.01
5155 5684 4.505039 GCCGTCCATATTGAGGGAGTTTAT 60.505 45.833 17.33 0.00 41.73 1.40
5156 5685 5.279809 GCCGTCCATATTGAGGGAGTTTATA 60.280 44.000 17.33 0.00 41.73 0.98
5201 5730 4.033776 CCGGGAAGCAGGGAAGCA 62.034 66.667 0.00 0.00 36.85 3.91
5202 5731 2.034066 CGGGAAGCAGGGAAGCAA 59.966 61.111 0.00 0.00 36.85 3.91
5203 5732 1.603455 CGGGAAGCAGGGAAGCAAA 60.603 57.895 0.00 0.00 36.85 3.68
5204 5733 1.866853 CGGGAAGCAGGGAAGCAAAC 61.867 60.000 0.00 0.00 36.85 2.93
5216 5745 1.754226 GAAGCAAACCCTGAACACCAA 59.246 47.619 0.00 0.00 0.00 3.67
5255 5792 0.941542 TGGCCGAACAAGAGAAAACG 59.058 50.000 0.00 0.00 0.00 3.60
5382 5919 0.107848 CGTCATGAACCAGGTACCCC 60.108 60.000 8.74 0.00 0.00 4.95
5394 5931 2.363795 TACCCCACGCCTCCTCTG 60.364 66.667 0.00 0.00 0.00 3.35
5404 5941 4.154347 CTCCTCTGCACCTCCGGC 62.154 72.222 0.00 0.00 0.00 6.13
5607 6152 0.460987 GTGATTCCTGAGTCCTGGCG 60.461 60.000 0.00 0.00 0.00 5.69
5608 6153 1.522580 GATTCCTGAGTCCTGGCGC 60.523 63.158 0.00 0.00 0.00 6.53
5609 6154 2.932130 GATTCCTGAGTCCTGGCGCC 62.932 65.000 22.73 22.73 0.00 6.53
5610 6155 4.704103 TCCTGAGTCCTGGCGCCT 62.704 66.667 29.70 6.37 0.00 5.52
5611 6156 2.759973 CCTGAGTCCTGGCGCCTA 60.760 66.667 29.70 13.31 0.00 3.93
5612 6157 2.359169 CCTGAGTCCTGGCGCCTAA 61.359 63.158 29.70 7.24 0.00 2.69
5613 6158 1.153549 CTGAGTCCTGGCGCCTAAC 60.154 63.158 29.70 21.55 0.00 2.34
5614 6159 1.608717 CTGAGTCCTGGCGCCTAACT 61.609 60.000 29.70 25.75 0.00 2.24
5615 6160 1.153549 GAGTCCTGGCGCCTAACTG 60.154 63.158 29.70 11.29 0.00 3.16
5616 6161 2.125106 GTCCTGGCGCCTAACTGG 60.125 66.667 29.70 20.16 39.35 4.00
5617 6162 2.606519 TCCTGGCGCCTAACTGGT 60.607 61.111 29.70 0.00 38.35 4.00
5644 6189 3.312146 GGATTTTGTTTGGGTTGCTTGTG 59.688 43.478 0.00 0.00 0.00 3.33
5658 6203 3.126703 TTGTGCCGGTGGATGGTGT 62.127 57.895 1.90 0.00 0.00 4.16
5660 6205 3.245346 TGCCGGTGGATGGTGTGA 61.245 61.111 1.90 0.00 0.00 3.58
5684 6229 2.893489 GGAGCTGATTTGTTTTCCACCT 59.107 45.455 0.00 0.00 0.00 4.00
5695 6240 2.054232 TTTCCACCTGCGTTTTGGTA 57.946 45.000 0.00 0.00 34.79 3.25
5780 6325 5.937111 ACTGAACTGTATGGTTAGTTTGGT 58.063 37.500 0.00 0.00 37.27 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.104304 ATTTCTTAGCGTCGGCGGAT 59.896 50.000 13.05 0.00 46.35 4.18
1 2 0.526954 GATTTCTTAGCGTCGGCGGA 60.527 55.000 13.05 0.00 46.35 5.54
2 3 1.808234 CGATTTCTTAGCGTCGGCGG 61.808 60.000 13.05 0.00 46.35 6.13
3 4 1.553654 CGATTTCTTAGCGTCGGCG 59.446 57.895 4.29 4.29 46.35 6.46
4 5 1.146358 AGCGATTTCTTAGCGTCGGC 61.146 55.000 0.00 0.00 40.37 5.54
5 6 1.005975 CAAGCGATTTCTTAGCGTCGG 60.006 52.381 0.00 0.00 34.85 4.79
6 7 1.005975 CCAAGCGATTTCTTAGCGTCG 60.006 52.381 0.00 0.00 37.17 5.12
8 9 1.369625 CCCAAGCGATTTCTTAGCGT 58.630 50.000 0.00 0.00 35.78 5.07
9 10 0.657840 CCCCAAGCGATTTCTTAGCG 59.342 55.000 0.00 0.00 35.78 4.26
10 11 1.943340 CTCCCCAAGCGATTTCTTAGC 59.057 52.381 0.00 0.00 0.00 3.09
11 12 2.565841 CCTCCCCAAGCGATTTCTTAG 58.434 52.381 0.00 0.00 0.00 2.18
12 13 1.211949 CCCTCCCCAAGCGATTTCTTA 59.788 52.381 0.00 0.00 0.00 2.10
13 14 0.034089 CCCTCCCCAAGCGATTTCTT 60.034 55.000 0.00 0.00 0.00 2.52
14 15 1.609783 CCCTCCCCAAGCGATTTCT 59.390 57.895 0.00 0.00 0.00 2.52
15 16 2.121538 GCCCTCCCCAAGCGATTTC 61.122 63.158 0.00 0.00 0.00 2.17
16 17 2.043953 GCCCTCCCCAAGCGATTT 60.044 61.111 0.00 0.00 0.00 2.17
21 22 4.660938 AACACGCCCTCCCCAAGC 62.661 66.667 0.00 0.00 0.00 4.01
22 23 2.672996 CAACACGCCCTCCCCAAG 60.673 66.667 0.00 0.00 0.00 3.61
23 24 4.278513 CCAACACGCCCTCCCCAA 62.279 66.667 0.00 0.00 0.00 4.12
53 54 6.364706 CGAGATATTGTCAACCTTAGAGCATC 59.635 42.308 0.00 0.00 0.00 3.91
54 55 6.183360 ACGAGATATTGTCAACCTTAGAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
55 56 5.127194 ACGAGATATTGTCAACCTTAGAGCA 59.873 40.000 0.00 0.00 0.00 4.26
56 57 5.593010 ACGAGATATTGTCAACCTTAGAGC 58.407 41.667 0.00 0.00 0.00 4.09
57 58 8.407064 AGTTACGAGATATTGTCAACCTTAGAG 58.593 37.037 0.00 0.00 0.00 2.43
58 59 8.188799 CAGTTACGAGATATTGTCAACCTTAGA 58.811 37.037 0.00 0.00 0.00 2.10
78 79 4.663091 CGAAAAGTTTACGTGCACAGTTAC 59.337 41.667 18.64 15.27 0.00 2.50
86 87 1.598601 TGGGACGAAAAGTTTACGTGC 59.401 47.619 0.00 0.00 44.78 5.34
144 145 1.218316 GCAAGCCGGCTACTGTAGT 59.782 57.895 33.07 9.56 0.00 2.73
145 146 0.528684 GAGCAAGCCGGCTACTGTAG 60.529 60.000 33.07 16.20 45.99 2.74
146 147 1.254975 TGAGCAAGCCGGCTACTGTA 61.255 55.000 33.07 17.59 45.99 2.74
147 148 2.111999 TTGAGCAAGCCGGCTACTGT 62.112 55.000 33.07 15.27 45.99 3.55
157 158 3.424962 GGTGTCGAGTAATTTGAGCAAGC 60.425 47.826 0.00 0.00 0.00 4.01
285 287 3.702048 GCTACAGCGGGACCACCA 61.702 66.667 0.00 0.00 40.22 4.17
373 375 2.024176 TCTGAGCCGAAGTAATTGCC 57.976 50.000 0.00 0.00 0.00 4.52
433 435 6.147437 AGGGAATTTATTGTTGTACTGGGA 57.853 37.500 0.00 0.00 0.00 4.37
434 436 6.850752 AAGGGAATTTATTGTTGTACTGGG 57.149 37.500 0.00 0.00 0.00 4.45
483 498 4.395625 CTCGTTACCCTTCCCTTCTTTTT 58.604 43.478 0.00 0.00 0.00 1.94
484 499 3.244805 CCTCGTTACCCTTCCCTTCTTTT 60.245 47.826 0.00 0.00 0.00 2.27
486 501 1.907255 CCTCGTTACCCTTCCCTTCTT 59.093 52.381 0.00 0.00 0.00 2.52
487 502 1.078324 TCCTCGTTACCCTTCCCTTCT 59.922 52.381 0.00 0.00 0.00 2.85
488 503 1.206610 GTCCTCGTTACCCTTCCCTTC 59.793 57.143 0.00 0.00 0.00 3.46
490 505 0.969409 CGTCCTCGTTACCCTTCCCT 60.969 60.000 0.00 0.00 0.00 4.20
491 506 0.967380 TCGTCCTCGTTACCCTTCCC 60.967 60.000 0.00 0.00 38.33 3.97
492 507 0.455005 CTCGTCCTCGTTACCCTTCC 59.545 60.000 0.00 0.00 38.33 3.46
493 508 1.401199 CTCTCGTCCTCGTTACCCTTC 59.599 57.143 0.00 0.00 38.33 3.46
495 510 0.617413 TCTCTCGTCCTCGTTACCCT 59.383 55.000 0.00 0.00 38.33 4.34
496 511 1.457346 TTCTCTCGTCCTCGTTACCC 58.543 55.000 0.00 0.00 38.33 3.69
497 512 3.240884 GTTTTCTCTCGTCCTCGTTACC 58.759 50.000 0.00 0.00 38.33 2.85
498 513 3.893720 TGTTTTCTCTCGTCCTCGTTAC 58.106 45.455 0.00 0.00 38.33 2.50
499 514 4.216902 TGATGTTTTCTCTCGTCCTCGTTA 59.783 41.667 0.00 0.00 38.33 3.18
501 516 2.557056 TGATGTTTTCTCTCGTCCTCGT 59.443 45.455 0.00 0.00 38.33 4.18
502 517 3.175152 CTGATGTTTTCTCTCGTCCTCG 58.825 50.000 0.00 0.00 38.55 4.63
503 518 3.923461 CACTGATGTTTTCTCTCGTCCTC 59.077 47.826 0.00 0.00 0.00 3.71
504 519 3.322254 ACACTGATGTTTTCTCTCGTCCT 59.678 43.478 0.00 0.00 34.46 3.85
506 521 5.343593 CACTACACTGATGTTTTCTCTCGTC 59.656 44.000 0.00 0.00 40.48 4.20
507 522 5.221263 ACACTACACTGATGTTTTCTCTCGT 60.221 40.000 0.00 0.00 40.48 4.18
508 523 5.223382 ACACTACACTGATGTTTTCTCTCG 58.777 41.667 0.00 0.00 40.48 4.04
510 525 6.295349 CCCTACACTACACTGATGTTTTCTCT 60.295 42.308 0.00 0.00 40.48 3.10
532 662 0.909623 CTCGTTACCCATCCAACCCT 59.090 55.000 0.00 0.00 0.00 4.34
568 705 3.943034 GCTCGCTCGCTCGCTCTA 61.943 66.667 0.00 0.00 0.00 2.43
578 719 0.456995 ACAGCTTTACTCGCTCGCTC 60.457 55.000 0.00 0.00 35.07 5.03
579 720 0.734253 CACAGCTTTACTCGCTCGCT 60.734 55.000 0.00 0.00 35.07 4.93
580 721 1.009389 ACACAGCTTTACTCGCTCGC 61.009 55.000 0.00 0.00 35.07 5.03
581 722 0.710567 CACACAGCTTTACTCGCTCG 59.289 55.000 0.00 0.00 35.07 5.03
582 723 1.071605 CCACACAGCTTTACTCGCTC 58.928 55.000 0.00 0.00 35.07 5.03
583 724 0.393077 ACCACACAGCTTTACTCGCT 59.607 50.000 0.00 0.00 38.49 4.93
584 725 1.226746 AACCACACAGCTTTACTCGC 58.773 50.000 0.00 0.00 0.00 5.03
585 726 2.993899 CCTAACCACACAGCTTTACTCG 59.006 50.000 0.00 0.00 0.00 4.18
586 727 3.007614 TCCCTAACCACACAGCTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
587 728 2.976882 TCCCTAACCACACAGCTTTACT 59.023 45.455 0.00 0.00 0.00 2.24
588 729 3.412237 TCCCTAACCACACAGCTTTAC 57.588 47.619 0.00 0.00 0.00 2.01
589 730 4.394729 CTTTCCCTAACCACACAGCTTTA 58.605 43.478 0.00 0.00 0.00 1.85
999 1420 1.010795 TGAGGAGGACTGATGAGGGA 58.989 55.000 0.00 0.00 0.00 4.20
1064 1501 2.667418 CCAGTCCCAGCCAGAGTG 59.333 66.667 0.00 0.00 34.95 3.51
1125 1578 4.722535 TCTTGGCCGGCTCCTCCT 62.723 66.667 28.56 0.00 0.00 3.69
1173 1629 0.743688 CAGAGTCCAGAGATGACGGG 59.256 60.000 0.00 0.00 37.80 5.28
1246 1703 1.269051 CCAACCGAAGCAAACAAGGAC 60.269 52.381 0.00 0.00 0.00 3.85
1314 1774 1.937391 CGCCGCATTCAGATCTTCC 59.063 57.895 0.00 0.00 0.00 3.46
1351 1815 2.725127 ATCCCCGCGGCCTATAGACA 62.725 60.000 22.85 0.00 0.00 3.41
1409 1875 0.673437 CACCAAATCACGCCAGGTTT 59.327 50.000 0.00 0.00 0.00 3.27
1459 1925 2.279252 CCCACCGGATTAGACGCG 60.279 66.667 9.46 3.53 0.00 6.01
1553 2022 1.476833 GCTCCTGGGCAAATTATCGGA 60.477 52.381 0.00 0.00 0.00 4.55
1646 2115 0.583438 CTTCACCTGCAACAGTCACG 59.417 55.000 0.00 0.00 0.00 4.35
1701 2170 2.030562 CCAACGACGGCAGGACTT 59.969 61.111 0.00 0.00 0.00 3.01
1703 2172 3.041940 CACCAACGACGGCAGGAC 61.042 66.667 9.09 0.00 0.00 3.85
1709 2178 2.184167 AACAAGGCACCAACGACGG 61.184 57.895 0.00 0.00 0.00 4.79
1714 2183 0.954452 CTCCTCAACAAGGCACCAAC 59.046 55.000 0.00 0.00 45.78 3.77
1718 2187 2.550830 TTCTCTCCTCAACAAGGCAC 57.449 50.000 0.00 0.00 45.78 5.01
1719 2188 2.354103 CGATTCTCTCCTCAACAAGGCA 60.354 50.000 0.00 0.00 45.78 4.75
1720 2189 2.275318 CGATTCTCTCCTCAACAAGGC 58.725 52.381 0.00 0.00 45.78 4.35
1762 2231 1.600636 CCACCAAGCAAGAGCCGAA 60.601 57.895 0.00 0.00 43.56 4.30
1780 2249 5.528870 ACCTTAGCATAACAAGTGCAAAAC 58.471 37.500 0.00 0.00 44.87 2.43
1783 2252 4.455533 CAGACCTTAGCATAACAAGTGCAA 59.544 41.667 0.00 0.00 44.87 4.08
1814 2283 4.461081 AGGCTCCGCAATCTTATCTACTAG 59.539 45.833 0.00 0.00 0.00 2.57
1858 2327 2.507992 CTCTGCACCTTCCGAGCG 60.508 66.667 0.00 0.00 0.00 5.03
1909 2378 2.092699 GGAGGTCTTCCCTTTCCATGAG 60.093 54.545 0.00 0.00 46.51 2.90
1996 2465 2.765807 CTCCGGCCACCCTCATCT 60.766 66.667 2.24 0.00 0.00 2.90
2059 2528 4.537965 CGACATAGACCGTCTTCATAAGG 58.462 47.826 6.31 0.00 0.00 2.69
2083 2552 3.468770 CTCAGGCTTCTCCTCATCAATG 58.531 50.000 0.00 0.00 45.52 2.82
2137 2606 0.457035 CATCCATGAACGGCCCTTTG 59.543 55.000 0.00 0.00 0.00 2.77
2207 2676 1.228367 CCAAGCCTTCACCACTGCT 60.228 57.895 0.00 0.00 35.08 4.24
2275 2744 1.972223 AGTAGCCTGTGACGAGCGT 60.972 57.895 0.00 0.00 0.00 5.07
2293 2762 1.476833 GGAGGCAAGGACACAGTTTCA 60.477 52.381 0.00 0.00 0.00 2.69
2335 2804 2.512286 AGCGATGCATCCCACACG 60.512 61.111 20.87 9.86 0.00 4.49
2383 2852 5.155161 ACCACTCCCATGCTATCAATACTA 58.845 41.667 0.00 0.00 0.00 1.82
2386 2855 3.973305 TGACCACTCCCATGCTATCAATA 59.027 43.478 0.00 0.00 0.00 1.90
2392 2861 0.904649 CAGTGACCACTCCCATGCTA 59.095 55.000 0.00 0.00 40.20 3.49
2401 2870 1.002868 GCTCATGGCAGTGACCACT 60.003 57.895 8.23 0.00 44.17 4.00
2485 2957 3.113260 ACACTTCCAAAGTTCCTCTCG 57.887 47.619 0.00 0.00 40.46 4.04
2641 3113 1.035932 TCGCCTTTCCTCTAGGGTCG 61.036 60.000 0.00 0.00 36.25 4.79
2644 3116 1.762957 TGAATCGCCTTTCCTCTAGGG 59.237 52.381 0.00 0.00 35.41 3.53
2758 3230 2.093606 GCACCTAGTCCCACTTAACTCC 60.094 54.545 0.00 0.00 0.00 3.85
2764 3236 2.625282 AGTAGCACCTAGTCCCACTT 57.375 50.000 0.00 0.00 0.00 3.16
2926 3398 4.280677 GGACAAAATTCCATGACCAGACAA 59.719 41.667 0.00 0.00 35.49 3.18
3096 3569 9.807649 GCAAATGGAATCAATACTAAACTTGAT 57.192 29.630 0.00 0.00 42.41 2.57
3109 3582 9.381033 CATTAAATTGGTAGCAAATGGAATCAA 57.619 29.630 12.00 0.00 0.00 2.57
3110 3583 8.538701 ACATTAAATTGGTAGCAAATGGAATCA 58.461 29.630 12.00 0.00 0.00 2.57
3111 3584 8.947055 ACATTAAATTGGTAGCAAATGGAATC 57.053 30.769 12.00 0.00 0.00 2.52
3113 3586 8.474025 CCTACATTAAATTGGTAGCAAATGGAA 58.526 33.333 12.00 4.51 34.55 3.53
3165 3638 7.877097 CAGGCTCAACTGCTTCTCTAATATTAT 59.123 37.037 0.00 0.00 0.00 1.28
3176 3649 0.520847 GCTTCAGGCTCAACTGCTTC 59.479 55.000 0.00 0.00 38.36 3.86
3177 3650 0.179009 TGCTTCAGGCTCAACTGCTT 60.179 50.000 0.00 0.00 42.39 3.91
3178 3651 0.037877 ATGCTTCAGGCTCAACTGCT 59.962 50.000 0.00 0.00 42.39 4.24
3179 3652 1.742761 TATGCTTCAGGCTCAACTGC 58.257 50.000 0.00 0.00 42.39 4.40
3216 3689 2.074967 TCCCTTGCGGAAACCATCT 58.925 52.632 0.00 0.00 37.88 2.90
3257 3744 7.120726 CCCAAAAGATAACGTCCTATCAAACTT 59.879 37.037 9.36 0.00 31.71 2.66
3258 3745 6.598064 CCCAAAAGATAACGTCCTATCAAACT 59.402 38.462 9.36 0.00 31.71 2.66
3270 3757 2.423538 CCTGAAGCCCCAAAAGATAACG 59.576 50.000 0.00 0.00 0.00 3.18
3299 3787 2.434884 CCGGGCAGCACTACACTG 60.435 66.667 0.00 0.00 38.22 3.66
3301 3789 1.017701 GTAACCGGGCAGCACTACAC 61.018 60.000 6.32 0.00 0.00 2.90
3323 3811 2.299867 ACCGCATTCAGAAATTTTGCCT 59.700 40.909 6.28 0.00 0.00 4.75
3328 3816 6.375455 AGTCATAAGACCGCATTCAGAAATTT 59.625 34.615 0.00 0.00 46.15 1.82
3340 3828 2.668457 CTCACAACAGTCATAAGACCGC 59.332 50.000 0.00 0.00 46.15 5.68
3341 3829 4.174411 TCTCACAACAGTCATAAGACCG 57.826 45.455 0.00 0.00 46.15 4.79
3357 3845 2.462456 TTCTCTGCACACCATCTCAC 57.538 50.000 0.00 0.00 0.00 3.51
3381 3869 5.446473 CCTGCAGAGTACATTCGAACAAATC 60.446 44.000 17.39 0.00 0.00 2.17
3390 3878 1.734465 GCACACCTGCAGAGTACATTC 59.266 52.381 17.39 0.00 43.62 2.67
3397 3885 0.038251 TTACGAGCACACCTGCAGAG 60.038 55.000 17.39 10.07 46.97 3.35
3437 3925 3.441222 TCAACATGCTGCCTACATTTCAG 59.559 43.478 0.00 0.00 0.00 3.02
3470 3959 9.436957 CTAATTGGAGCACGGTTTATAATATCT 57.563 33.333 0.00 0.00 0.00 1.98
3553 4047 5.001232 TGCAACTAGCCAACTAGGTAAAAG 58.999 41.667 5.19 0.00 44.97 2.27
3554 4048 4.975631 TGCAACTAGCCAACTAGGTAAAA 58.024 39.130 5.19 0.00 44.97 1.52
3555 4049 4.627284 TGCAACTAGCCAACTAGGTAAA 57.373 40.909 5.19 0.00 44.97 2.01
3556 4050 4.041198 AGTTGCAACTAGCCAACTAGGTAA 59.959 41.667 30.25 0.00 44.97 2.85
3586 4080 0.668706 TCAGAGAGCGCAAAGTCAGC 60.669 55.000 11.47 0.00 0.00 4.26
3592 4086 2.095567 GCTCAAATTCAGAGAGCGCAAA 60.096 45.455 11.47 0.00 44.37 3.68
3606 4100 3.853475 GCAGCATAAAACCTGCTCAAAT 58.147 40.909 5.45 0.00 46.79 2.32
3649 4143 1.773052 ACTCCCAGCATGTGCAGATAT 59.227 47.619 7.83 0.00 45.16 1.63
3670 4164 1.073284 GGCTTCAGGTCCCTGTAAACA 59.927 52.381 12.88 0.00 43.96 2.83
3773 4267 3.054728 TCAAAGGCCGATGTCCTGATTAA 60.055 43.478 10.14 0.00 33.43 1.40
3886 4380 2.649531 TCTGACCGAACAATTTGGGT 57.350 45.000 0.78 0.00 45.91 4.51
3943 4437 0.326264 GGTTGATGGCACTCTGTCCT 59.674 55.000 0.00 0.00 0.00 3.85
3988 4482 2.522836 ATGACATGGATCGAGCTGAC 57.477 50.000 0.00 0.00 0.00 3.51
4147 4641 2.512745 ACGTTGAACAGCGTGGCA 60.513 55.556 14.88 0.00 46.11 4.92
4222 4716 3.123111 AGGAGCCCCCTGATGAGA 58.877 61.111 0.00 0.00 45.61 3.27
4375 4869 1.292223 GTACTTCACGGGCAGCTCA 59.708 57.895 0.00 0.00 0.00 4.26
4505 4999 3.004734 ACAGTATGCAAACAACAAGCTCC 59.995 43.478 0.00 0.00 42.53 4.70
4562 5056 2.143122 ACTGACATAAACAGCACCGTG 58.857 47.619 0.00 0.00 38.74 4.94
4648 5144 1.492176 ACAGGCTATTCCCATCAGGTG 59.508 52.381 0.00 0.00 36.75 4.00
4649 5145 1.771255 GACAGGCTATTCCCATCAGGT 59.229 52.381 0.00 0.00 36.75 4.00
4759 5256 2.588877 AGAATGCCCGATTCGCCG 60.589 61.111 0.00 0.00 44.72 6.46
4762 5259 0.933097 CAGTCAGAATGCCCGATTCG 59.067 55.000 0.00 0.00 44.72 3.34
4766 5263 0.911769 AATCCAGTCAGAATGCCCGA 59.088 50.000 0.00 0.00 34.76 5.14
4819 5348 1.899814 AGGAGCGACCAATCAACACTA 59.100 47.619 5.84 0.00 42.04 2.74
4822 5351 2.270352 AAAGGAGCGACCAATCAACA 57.730 45.000 5.84 0.00 42.04 3.33
4824 5353 3.695830 ACTAAAGGAGCGACCAATCAA 57.304 42.857 5.84 0.00 42.04 2.57
4846 5375 9.810545 CAAAGGGAAAACTCACTAAAATAAACA 57.189 29.630 0.00 0.00 0.00 2.83
4849 5378 9.191479 TGTCAAAGGGAAAACTCACTAAAATAA 57.809 29.630 0.00 0.00 0.00 1.40
4851 5380 7.654022 TGTCAAAGGGAAAACTCACTAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
4852 5381 7.469537 TTGTCAAAGGGAAAACTCACTAAAA 57.530 32.000 0.00 0.00 0.00 1.52
4853 5382 7.469537 TTTGTCAAAGGGAAAACTCACTAAA 57.530 32.000 0.00 0.00 0.00 1.85
4868 5397 6.275335 TGCATCTCTTTTTCCTTTGTCAAAG 58.725 36.000 17.02 17.02 38.24 2.77
4869 5398 6.219417 TGCATCTCTTTTTCCTTTGTCAAA 57.781 33.333 0.00 0.00 0.00 2.69
4870 5399 5.737063 GCTGCATCTCTTTTTCCTTTGTCAA 60.737 40.000 0.00 0.00 0.00 3.18
4871 5400 4.261741 GCTGCATCTCTTTTTCCTTTGTCA 60.262 41.667 0.00 0.00 0.00 3.58
4872 5401 4.233005 GCTGCATCTCTTTTTCCTTTGTC 58.767 43.478 0.00 0.00 0.00 3.18
4873 5402 3.304928 CGCTGCATCTCTTTTTCCTTTGT 60.305 43.478 0.00 0.00 0.00 2.83
4874 5403 3.058016 TCGCTGCATCTCTTTTTCCTTTG 60.058 43.478 0.00 0.00 0.00 2.77
4875 5404 3.149196 TCGCTGCATCTCTTTTTCCTTT 58.851 40.909 0.00 0.00 0.00 3.11
4876 5405 2.746362 CTCGCTGCATCTCTTTTTCCTT 59.254 45.455 0.00 0.00 0.00 3.36
4877 5406 2.289945 ACTCGCTGCATCTCTTTTTCCT 60.290 45.455 0.00 0.00 0.00 3.36
4878 5407 2.079925 ACTCGCTGCATCTCTTTTTCC 58.920 47.619 0.00 0.00 0.00 3.13
4879 5408 2.738846 TCACTCGCTGCATCTCTTTTTC 59.261 45.455 0.00 0.00 0.00 2.29
4895 5424 8.802267 AGCTATTCCAAAGTCTATAGATCACTC 58.198 37.037 5.57 0.00 0.00 3.51
4896 5425 8.584157 CAGCTATTCCAAAGTCTATAGATCACT 58.416 37.037 5.57 0.00 0.00 3.41
4897 5426 8.580720 TCAGCTATTCCAAAGTCTATAGATCAC 58.419 37.037 5.57 0.00 0.00 3.06
4898 5427 8.712228 TCAGCTATTCCAAAGTCTATAGATCA 57.288 34.615 5.57 0.00 0.00 2.92
4904 5433 9.499479 CACATAATCAGCTATTCCAAAGTCTAT 57.501 33.333 0.00 0.00 0.00 1.98
4907 5436 7.559590 ACACATAATCAGCTATTCCAAAGTC 57.440 36.000 0.00 0.00 0.00 3.01
4924 5453 6.884295 ACCAGCTAGAGCAAATAAACACATAA 59.116 34.615 4.01 0.00 45.16 1.90
4929 5458 9.627123 AATATAACCAGCTAGAGCAAATAAACA 57.373 29.630 4.01 0.00 45.16 2.83
4932 5461 9.494271 CTGAATATAACCAGCTAGAGCAAATAA 57.506 33.333 4.01 0.00 45.16 1.40
4936 5465 5.366768 ACCTGAATATAACCAGCTAGAGCAA 59.633 40.000 4.01 0.00 45.16 3.91
4937 5466 4.901849 ACCTGAATATAACCAGCTAGAGCA 59.098 41.667 4.01 0.00 45.16 4.26
4938 5467 5.221541 ACACCTGAATATAACCAGCTAGAGC 60.222 44.000 0.00 0.00 42.49 4.09
4939 5468 6.412362 ACACCTGAATATAACCAGCTAGAG 57.588 41.667 0.00 0.00 0.00 2.43
4940 5469 6.382859 TCAACACCTGAATATAACCAGCTAGA 59.617 38.462 0.00 0.00 0.00 2.43
4941 5470 6.582636 TCAACACCTGAATATAACCAGCTAG 58.417 40.000 0.00 0.00 0.00 3.42
4942 5471 6.553953 TCAACACCTGAATATAACCAGCTA 57.446 37.500 0.00 0.00 0.00 3.32
4943 5472 5.435686 TCAACACCTGAATATAACCAGCT 57.564 39.130 0.00 0.00 0.00 4.24
4944 5473 5.822519 TCATCAACACCTGAATATAACCAGC 59.177 40.000 0.00 0.00 37.67 4.85
4945 5474 7.864108 TTCATCAACACCTGAATATAACCAG 57.136 36.000 0.00 0.00 37.67 4.00
4946 5475 8.821686 ATTTCATCAACACCTGAATATAACCA 57.178 30.769 0.00 0.00 37.67 3.67
4947 5476 9.520204 CAATTTCATCAACACCTGAATATAACC 57.480 33.333 0.00 0.00 37.67 2.85
4948 5477 9.520204 CCAATTTCATCAACACCTGAATATAAC 57.480 33.333 0.00 0.00 37.67 1.89
4949 5478 9.253832 ACCAATTTCATCAACACCTGAATATAA 57.746 29.630 0.00 0.00 37.67 0.98
4950 5479 8.821686 ACCAATTTCATCAACACCTGAATATA 57.178 30.769 0.00 0.00 37.67 0.86
4951 5480 7.722949 ACCAATTTCATCAACACCTGAATAT 57.277 32.000 0.00 0.00 37.67 1.28
4952 5481 7.537596 AACCAATTTCATCAACACCTGAATA 57.462 32.000 0.00 0.00 37.67 1.75
4953 5482 6.423776 AACCAATTTCATCAACACCTGAAT 57.576 33.333 0.00 0.00 37.67 2.57
4954 5483 5.867903 AACCAATTTCATCAACACCTGAA 57.132 34.783 0.00 0.00 37.67 3.02
4955 5484 6.516527 GCTTAACCAATTTCATCAACACCTGA 60.517 38.462 0.00 0.00 38.81 3.86
4956 5485 5.634859 GCTTAACCAATTTCATCAACACCTG 59.365 40.000 0.00 0.00 0.00 4.00
4957 5486 5.539955 AGCTTAACCAATTTCATCAACACCT 59.460 36.000 0.00 0.00 0.00 4.00
4958 5487 5.783111 AGCTTAACCAATTTCATCAACACC 58.217 37.500 0.00 0.00 0.00 4.16
4959 5488 5.569059 CGAGCTTAACCAATTTCATCAACAC 59.431 40.000 0.00 0.00 0.00 3.32
4960 5489 5.471797 TCGAGCTTAACCAATTTCATCAACA 59.528 36.000 0.00 0.00 0.00 3.33
4961 5490 5.938322 TCGAGCTTAACCAATTTCATCAAC 58.062 37.500 0.00 0.00 0.00 3.18
4962 5491 5.937540 TCTCGAGCTTAACCAATTTCATCAA 59.062 36.000 7.81 0.00 0.00 2.57
4963 5492 5.487433 TCTCGAGCTTAACCAATTTCATCA 58.513 37.500 7.81 0.00 0.00 3.07
4964 5493 6.251549 GTTCTCGAGCTTAACCAATTTCATC 58.748 40.000 7.81 0.00 0.00 2.92
4965 5494 5.123979 GGTTCTCGAGCTTAACCAATTTCAT 59.876 40.000 22.97 0.00 41.89 2.57
4966 5495 4.454504 GGTTCTCGAGCTTAACCAATTTCA 59.545 41.667 22.97 0.00 41.89 2.69
4967 5496 4.695928 AGGTTCTCGAGCTTAACCAATTTC 59.304 41.667 27.17 7.74 44.21 2.17
4968 5497 4.455877 CAGGTTCTCGAGCTTAACCAATTT 59.544 41.667 27.17 11.09 44.21 1.82
4973 5502 2.745515 ACAGGTTCTCGAGCTTAACC 57.254 50.000 21.25 21.25 42.48 2.85
4974 5503 4.056050 TCAAACAGGTTCTCGAGCTTAAC 58.944 43.478 7.81 7.26 32.70 2.01
4975 5504 4.202223 ACTCAAACAGGTTCTCGAGCTTAA 60.202 41.667 7.81 0.00 32.70 1.85
4977 5506 2.103263 ACTCAAACAGGTTCTCGAGCTT 59.897 45.455 7.81 0.00 32.70 3.74
4990 5519 5.414789 TCTTCGGATAATCCACTCAAACA 57.585 39.130 0.00 0.00 35.91 2.83
4995 5524 3.804873 GCAGTTCTTCGGATAATCCACTC 59.195 47.826 0.00 0.00 35.91 3.51
4999 5528 4.060038 TCTGCAGTTCTTCGGATAATCC 57.940 45.455 14.67 0.00 0.00 3.01
5000 5529 5.178438 GGAATCTGCAGTTCTTCGGATAATC 59.822 44.000 14.67 0.00 0.00 1.75
5002 5531 4.442706 GGAATCTGCAGTTCTTCGGATAA 58.557 43.478 14.67 0.00 0.00 1.75
5003 5532 3.181465 GGGAATCTGCAGTTCTTCGGATA 60.181 47.826 14.67 0.00 0.00 2.59
5004 5533 2.420687 GGGAATCTGCAGTTCTTCGGAT 60.421 50.000 14.67 0.00 0.00 4.18
5007 5536 1.373570 GGGGAATCTGCAGTTCTTCG 58.626 55.000 14.67 0.00 0.00 3.79
5009 5538 0.693049 ACGGGGAATCTGCAGTTCTT 59.307 50.000 14.67 6.14 0.00 2.52
5012 5541 1.202879 TCAAACGGGGAATCTGCAGTT 60.203 47.619 14.67 7.43 0.00 3.16
5013 5542 0.400213 TCAAACGGGGAATCTGCAGT 59.600 50.000 14.67 0.00 0.00 4.40
5014 5543 1.402968 CATCAAACGGGGAATCTGCAG 59.597 52.381 7.63 7.63 0.00 4.41
5015 5544 1.271871 ACATCAAACGGGGAATCTGCA 60.272 47.619 0.00 0.00 0.00 4.41
5016 5545 1.463674 ACATCAAACGGGGAATCTGC 58.536 50.000 0.00 0.00 0.00 4.26
5017 5546 3.367292 CCAAACATCAAACGGGGAATCTG 60.367 47.826 0.00 0.00 0.00 2.90
5018 5547 2.825532 CCAAACATCAAACGGGGAATCT 59.174 45.455 0.00 0.00 0.00 2.40
5019 5548 2.560981 ACCAAACATCAAACGGGGAATC 59.439 45.455 0.00 0.00 0.00 2.52
5021 5550 2.074729 ACCAAACATCAAACGGGGAA 57.925 45.000 0.00 0.00 0.00 3.97
5023 5552 4.323553 TTTTACCAAACATCAAACGGGG 57.676 40.909 0.00 0.00 0.00 5.73
5042 5571 4.492791 ACGTAATAAACTGCGCCTTTTT 57.507 36.364 4.18 3.94 0.00 1.94
5043 5572 4.692155 AGTACGTAATAAACTGCGCCTTTT 59.308 37.500 4.18 6.76 0.00 2.27
5045 5574 3.853475 AGTACGTAATAAACTGCGCCTT 58.147 40.909 4.18 0.00 0.00 4.35
5047 5576 4.205792 CAGTAGTACGTAATAAACTGCGCC 59.794 45.833 11.66 0.00 31.98 6.53
5048 5577 4.205792 CCAGTAGTACGTAATAAACTGCGC 59.794 45.833 16.66 0.00 34.41 6.09
5049 5578 5.335127 ACCAGTAGTACGTAATAAACTGCG 58.665 41.667 16.66 13.15 34.41 5.18
5050 5579 9.950680 TTATACCAGTAGTACGTAATAAACTGC 57.049 33.333 16.66 7.68 34.41 4.40
5060 5589 7.391554 TCAGTCAACTTTATACCAGTAGTACGT 59.608 37.037 0.00 0.00 32.46 3.57
5061 5590 7.755591 TCAGTCAACTTTATACCAGTAGTACG 58.244 38.462 0.00 0.00 32.46 3.67
5063 5592 9.918630 GTTTCAGTCAACTTTATACCAGTAGTA 57.081 33.333 0.00 0.00 34.76 1.82
5066 5595 7.811236 CGAGTTTCAGTCAACTTTATACCAGTA 59.189 37.037 0.00 0.00 37.11 2.74
5067 5596 6.645415 CGAGTTTCAGTCAACTTTATACCAGT 59.355 38.462 0.00 0.00 37.11 4.00
5069 5598 5.407387 GCGAGTTTCAGTCAACTTTATACCA 59.593 40.000 0.00 0.00 37.11 3.25
5070 5599 5.163884 GGCGAGTTTCAGTCAACTTTATACC 60.164 44.000 0.00 0.00 37.11 2.73
5071 5600 5.638234 AGGCGAGTTTCAGTCAACTTTATAC 59.362 40.000 0.00 0.00 37.11 1.47
5072 5601 5.790593 AGGCGAGTTTCAGTCAACTTTATA 58.209 37.500 0.00 0.00 37.11 0.98
5073 5602 4.642429 AGGCGAGTTTCAGTCAACTTTAT 58.358 39.130 0.00 0.00 37.11 1.40
5074 5603 4.067972 AGGCGAGTTTCAGTCAACTTTA 57.932 40.909 0.00 0.00 37.11 1.85
5075 5604 2.919228 AGGCGAGTTTCAGTCAACTTT 58.081 42.857 0.00 0.00 37.11 2.66
5076 5605 2.622064 AGGCGAGTTTCAGTCAACTT 57.378 45.000 0.00 0.00 37.11 2.66
5077 5606 3.321111 TCTTAGGCGAGTTTCAGTCAACT 59.679 43.478 0.00 0.00 39.84 3.16
5078 5607 3.650139 TCTTAGGCGAGTTTCAGTCAAC 58.350 45.455 0.00 0.00 0.00 3.18
5079 5608 4.330944 TTCTTAGGCGAGTTTCAGTCAA 57.669 40.909 0.00 0.00 0.00 3.18
5080 5609 4.330944 TTTCTTAGGCGAGTTTCAGTCA 57.669 40.909 0.00 0.00 0.00 3.41
5081 5610 5.668558 TTTTTCTTAGGCGAGTTTCAGTC 57.331 39.130 0.00 0.00 0.00 3.51
5107 5636 8.486333 GCTAAGATCAGTTAGTTTCAGGCAACT 61.486 40.741 0.00 0.00 38.85 3.16
5108 5637 5.948992 AAGATCAGTTAGTTTCAGGCAAC 57.051 39.130 0.00 0.00 0.00 4.17
5109 5638 5.643777 GCTAAGATCAGTTAGTTTCAGGCAA 59.356 40.000 0.00 0.00 33.24 4.52
5110 5639 5.178797 GCTAAGATCAGTTAGTTTCAGGCA 58.821 41.667 0.00 0.00 33.24 4.75
5111 5640 4.572795 GGCTAAGATCAGTTAGTTTCAGGC 59.427 45.833 0.00 0.00 33.24 4.85
5112 5641 4.806247 CGGCTAAGATCAGTTAGTTTCAGG 59.194 45.833 0.00 0.00 33.24 3.86
5113 5642 5.411781 ACGGCTAAGATCAGTTAGTTTCAG 58.588 41.667 0.00 0.00 33.24 3.02
5114 5643 5.401531 ACGGCTAAGATCAGTTAGTTTCA 57.598 39.130 0.00 0.00 33.24 2.69
5115 5644 4.804665 GGACGGCTAAGATCAGTTAGTTTC 59.195 45.833 0.00 0.00 33.24 2.78
5116 5645 4.222145 TGGACGGCTAAGATCAGTTAGTTT 59.778 41.667 0.00 0.00 33.24 2.66
5117 5646 3.767673 TGGACGGCTAAGATCAGTTAGTT 59.232 43.478 0.00 0.00 33.24 2.24
5118 5647 3.362706 TGGACGGCTAAGATCAGTTAGT 58.637 45.455 0.00 0.00 33.24 2.24
5119 5648 4.592485 ATGGACGGCTAAGATCAGTTAG 57.408 45.455 0.00 0.00 33.74 2.34
5120 5649 6.266786 TCAATATGGACGGCTAAGATCAGTTA 59.733 38.462 0.00 0.00 0.00 2.24
5121 5650 5.070446 TCAATATGGACGGCTAAGATCAGTT 59.930 40.000 0.00 0.00 0.00 3.16
5122 5651 4.588951 TCAATATGGACGGCTAAGATCAGT 59.411 41.667 0.00 0.00 0.00 3.41
5123 5652 5.139435 TCAATATGGACGGCTAAGATCAG 57.861 43.478 0.00 0.00 0.00 2.90
5124 5653 4.021104 CCTCAATATGGACGGCTAAGATCA 60.021 45.833 0.00 0.00 0.00 2.92
5125 5654 4.499183 CCTCAATATGGACGGCTAAGATC 58.501 47.826 0.00 0.00 0.00 2.75
5126 5655 3.261897 CCCTCAATATGGACGGCTAAGAT 59.738 47.826 0.00 0.00 0.00 2.40
5127 5656 2.632996 CCCTCAATATGGACGGCTAAGA 59.367 50.000 0.00 0.00 0.00 2.10
5128 5657 2.632996 TCCCTCAATATGGACGGCTAAG 59.367 50.000 0.00 0.00 0.00 2.18
5129 5658 2.632996 CTCCCTCAATATGGACGGCTAA 59.367 50.000 0.00 0.00 0.00 3.09
5130 5659 2.248248 CTCCCTCAATATGGACGGCTA 58.752 52.381 0.00 0.00 0.00 3.93
5131 5660 1.051812 CTCCCTCAATATGGACGGCT 58.948 55.000 0.00 0.00 0.00 5.52
5132 5661 0.759346 ACTCCCTCAATATGGACGGC 59.241 55.000 0.00 0.00 0.00 5.68
5133 5662 3.560636 AAACTCCCTCAATATGGACGG 57.439 47.619 0.00 0.00 0.00 4.79
5134 5663 6.994221 AGTATAAACTCCCTCAATATGGACG 58.006 40.000 0.00 0.00 0.00 4.79
5135 5664 9.708092 GTTAGTATAAACTCCCTCAATATGGAC 57.292 37.037 0.00 0.00 37.15 4.02
5136 5665 9.670442 AGTTAGTATAAACTCCCTCAATATGGA 57.330 33.333 0.00 0.00 34.60 3.41
5137 5666 9.712305 CAGTTAGTATAAACTCCCTCAATATGG 57.288 37.037 0.00 0.00 37.61 2.74
5141 5670 8.822805 TCAACAGTTAGTATAAACTCCCTCAAT 58.177 33.333 0.00 0.00 37.61 2.57
5142 5671 8.197592 TCAACAGTTAGTATAAACTCCCTCAA 57.802 34.615 0.00 0.00 37.61 3.02
5143 5672 7.786046 TCAACAGTTAGTATAAACTCCCTCA 57.214 36.000 0.00 0.00 37.61 3.86
5144 5673 9.315525 GATTCAACAGTTAGTATAAACTCCCTC 57.684 37.037 0.00 0.00 37.61 4.30
5145 5674 9.047947 AGATTCAACAGTTAGTATAAACTCCCT 57.952 33.333 0.00 0.00 37.61 4.20
5153 5682 9.880157 GGGTGTTTAGATTCAACAGTTAGTATA 57.120 33.333 0.00 0.00 34.79 1.47
5154 5683 7.548075 CGGGTGTTTAGATTCAACAGTTAGTAT 59.452 37.037 0.00 0.00 34.79 2.12
5155 5684 6.869913 CGGGTGTTTAGATTCAACAGTTAGTA 59.130 38.462 0.00 0.00 34.79 1.82
5156 5685 5.699458 CGGGTGTTTAGATTCAACAGTTAGT 59.301 40.000 0.00 0.00 34.79 2.24
5194 5723 0.673985 GTGTTCAGGGTTTGCTTCCC 59.326 55.000 3.78 3.78 44.90 3.97
5196 5725 1.398692 TGGTGTTCAGGGTTTGCTTC 58.601 50.000 0.00 0.00 0.00 3.86
5197 5726 1.480545 GTTGGTGTTCAGGGTTTGCTT 59.519 47.619 0.00 0.00 0.00 3.91
5198 5727 1.111277 GTTGGTGTTCAGGGTTTGCT 58.889 50.000 0.00 0.00 0.00 3.91
5199 5728 0.104120 GGTTGGTGTTCAGGGTTTGC 59.896 55.000 0.00 0.00 0.00 3.68
5200 5729 0.750249 GGGTTGGTGTTCAGGGTTTG 59.250 55.000 0.00 0.00 0.00 2.93
5201 5730 0.397957 GGGGTTGGTGTTCAGGGTTT 60.398 55.000 0.00 0.00 0.00 3.27
5202 5731 1.231928 GGGGTTGGTGTTCAGGGTT 59.768 57.895 0.00 0.00 0.00 4.11
5203 5732 2.931921 GGGGTTGGTGTTCAGGGT 59.068 61.111 0.00 0.00 0.00 4.34
5204 5733 2.282180 CGGGGTTGGTGTTCAGGG 60.282 66.667 0.00 0.00 0.00 4.45
5229 5758 1.019278 TCTTGTTCGGCCAATCGAGC 61.019 55.000 2.24 0.00 40.42 5.03
5231 5760 0.606096 TCTCTTGTTCGGCCAATCGA 59.394 50.000 2.24 0.00 37.38 3.59
5242 5779 1.865340 GAGGTCGCGTTTTCTCTTGTT 59.135 47.619 5.77 0.00 0.00 2.83
5291 5828 4.124126 GGGGGAGGAGGGGATGGT 62.124 72.222 0.00 0.00 0.00 3.55
5354 5891 0.247185 GGTTCATGACGTCGGGGTTA 59.753 55.000 11.62 0.00 0.00 2.85
5382 5919 3.655810 GAGGTGCAGAGGAGGCGTG 62.656 68.421 0.00 0.00 0.00 5.34
5424 5961 2.492090 CGTGAGCGAGGAAGAGGG 59.508 66.667 0.00 0.00 41.33 4.30
5458 5995 2.693762 CCACATGAACTGCAGCCGG 61.694 63.158 15.27 0.00 0.00 6.13
5604 6149 2.332654 CCACAACCAGTTAGGCGCC 61.333 63.158 21.89 21.89 43.14 6.53
5607 6152 2.215942 AATCCCACAACCAGTTAGGC 57.784 50.000 0.00 0.00 43.14 3.93
5608 6153 3.895041 ACAAAATCCCACAACCAGTTAGG 59.105 43.478 0.00 0.00 45.67 2.69
5609 6154 5.529581 AACAAAATCCCACAACCAGTTAG 57.470 39.130 0.00 0.00 0.00 2.34
5610 6155 5.395768 CCAAACAAAATCCCACAACCAGTTA 60.396 40.000 0.00 0.00 0.00 2.24
5611 6156 4.512484 CAAACAAAATCCCACAACCAGTT 58.488 39.130 0.00 0.00 0.00 3.16
5612 6157 3.118445 CCAAACAAAATCCCACAACCAGT 60.118 43.478 0.00 0.00 0.00 4.00
5613 6158 3.465871 CCAAACAAAATCCCACAACCAG 58.534 45.455 0.00 0.00 0.00 4.00
5614 6159 2.171448 CCCAAACAAAATCCCACAACCA 59.829 45.455 0.00 0.00 0.00 3.67
5615 6160 2.171659 ACCCAAACAAAATCCCACAACC 59.828 45.455 0.00 0.00 0.00 3.77
5616 6161 3.552132 ACCCAAACAAAATCCCACAAC 57.448 42.857 0.00 0.00 0.00 3.32
5617 6162 3.878778 CAACCCAAACAAAATCCCACAA 58.121 40.909 0.00 0.00 0.00 3.33
5644 6189 2.436646 CTCACACCATCCACCGGC 60.437 66.667 0.00 0.00 0.00 6.13
5658 6203 4.074970 GGAAAACAAATCAGCTCCTCTCA 58.925 43.478 0.00 0.00 0.00 3.27
5660 6205 3.823304 GTGGAAAACAAATCAGCTCCTCT 59.177 43.478 0.00 0.00 0.00 3.69
5684 6229 1.810151 GATCCTGCTTACCAAAACGCA 59.190 47.619 0.00 0.00 0.00 5.24
5695 6240 1.573108 TCCTTCTTCCGATCCTGCTT 58.427 50.000 0.00 0.00 0.00 3.91
5739 6284 1.133009 AGTCTCACCTTGGTCTCCACT 60.133 52.381 0.00 0.00 30.78 4.00
5780 6325 5.123820 GGAATTGTGCTGAGCATACTTACAA 59.876 40.000 11.58 9.46 41.91 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.