Multiple sequence alignment - TraesCS2D01G390400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G390400 chr2D 100.000 3823 0 0 2808 6630 498029958 498026136 0.000000e+00 7060.0
1 TraesCS2D01G390400 chr2D 100.000 2498 0 0 1 2498 498032765 498030268 0.000000e+00 4614.0
2 TraesCS2D01G390400 chr2B 95.147 2658 84 23 3907 6548 584114536 584111908 0.000000e+00 4152.0
3 TraesCS2D01G390400 chr2B 93.514 1110 40 9 2826 3916 584115710 584114614 0.000000e+00 1622.0
4 TraesCS2D01G390400 chr2B 90.048 1256 61 23 1 1242 584117959 584116754 0.000000e+00 1568.0
5 TraesCS2D01G390400 chr2B 90.629 715 56 4 3907 4611 734355637 734356350 0.000000e+00 939.0
6 TraesCS2D01G390400 chr2B 91.444 374 15 9 2126 2498 584116149 584115792 1.280000e-136 497.0
7 TraesCS2D01G390400 chr2B 92.670 191 9 3 1534 1723 584116648 584116462 3.050000e-68 270.0
8 TraesCS2D01G390400 chr2B 95.706 163 6 1 1815 1977 584116394 584116233 1.830000e-65 261.0
9 TraesCS2D01G390400 chr2B 87.019 208 22 1 3191 3393 734355114 734355321 5.170000e-56 230.0
10 TraesCS2D01G390400 chr2B 93.902 82 5 0 6549 6630 584111937 584111856 2.510000e-24 124.0
11 TraesCS2D01G390400 chr2B 92.424 66 4 1 1229 1293 584116736 584116671 7.080000e-15 93.5
12 TraesCS2D01G390400 chr2A 94.583 2640 93 15 3911 6531 642571447 642568839 0.000000e+00 4037.0
13 TraesCS2D01G390400 chr2A 89.703 1311 60 32 1 1297 642574978 642573729 0.000000e+00 1604.0
14 TraesCS2D01G390400 chr2A 91.527 1133 53 16 2808 3916 642572644 642571531 0.000000e+00 1520.0
15 TraesCS2D01G390400 chr2A 91.152 486 25 7 1980 2448 642573235 642572751 1.560000e-180 643.0
16 TraesCS2D01G390400 chr2A 92.670 191 8 4 1534 1723 642573710 642573525 3.050000e-68 270.0
17 TraesCS2D01G390400 chr2A 87.200 250 9 5 1752 1983 642573537 642573293 5.100000e-66 263.0
18 TraesCS2D01G390400 chr2A 96.774 31 1 0 6084 6114 588268864 588268834 1.200000e-02 52.8
19 TraesCS2D01G390400 chr1B 91.224 923 68 6 3907 4818 117783057 117782137 0.000000e+00 1243.0
20 TraesCS2D01G390400 chr1B 87.500 208 21 1 3191 3393 117783580 117783373 1.110000e-57 235.0
21 TraesCS2D01G390400 chr3B 91.276 917 67 6 3913 4818 16704627 16703713 0.000000e+00 1238.0
22 TraesCS2D01G390400 chr3B 86.341 205 23 1 3194 3393 16705153 16704949 1.120000e-52 219.0
23 TraesCS2D01G390400 chr3B 88.372 172 14 6 3740 3910 16704871 16704705 1.130000e-47 202.0
24 TraesCS2D01G390400 chr6B 90.584 924 73 7 3907 4818 16554660 16553739 0.000000e+00 1212.0
25 TraesCS2D01G390400 chr6B 96.186 236 5 3 1300 1533 718330381 718330614 3.750000e-102 383.0
26 TraesCS2D01G390400 chr1D 90.486 925 68 7 3912 4818 18772697 18771775 0.000000e+00 1203.0
27 TraesCS2D01G390400 chr1D 97.368 228 4 2 1308 1533 326690549 326690322 2.900000e-103 387.0
28 TraesCS2D01G390400 chr1D 89.100 211 18 1 3191 3396 18773225 18773015 2.370000e-64 257.0
29 TraesCS2D01G390400 chr1D 88.571 175 14 3 3737 3910 18772943 18772774 2.420000e-49 207.0
30 TraesCS2D01G390400 chr3A 90.130 922 71 8 3912 4815 523893912 523894831 0.000000e+00 1181.0
31 TraesCS2D01G390400 chr3D 97.807 228 3 2 1308 1533 45345321 45345094 6.230000e-105 392.0
32 TraesCS2D01G390400 chr4A 95.851 241 6 3 1295 1533 706469556 706469794 2.900000e-103 387.0
33 TraesCS2D01G390400 chr7D 96.186 236 5 3 1300 1533 634662895 634663128 3.750000e-102 383.0
34 TraesCS2D01G390400 chr6D 96.186 236 5 3 1300 1533 44234989 44235222 3.750000e-102 383.0
35 TraesCS2D01G390400 chr6D 96.186 236 5 3 1300 1533 109267408 109267175 3.750000e-102 383.0
36 TraesCS2D01G390400 chr6D 96.186 236 5 3 1300 1533 465424377 465424610 3.750000e-102 383.0
37 TraesCS2D01G390400 chrUn 95.781 237 6 3 1299 1533 90496982 90496748 4.850000e-101 379.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G390400 chr2D 498026136 498032765 6629 True 5837.000000 7060 100.000000 1 6630 2 chr2D.!!$R1 6629
1 TraesCS2D01G390400 chr2B 584111856 584117959 6103 True 1073.437500 4152 93.106875 1 6630 8 chr2B.!!$R1 6629
2 TraesCS2D01G390400 chr2B 734355114 734356350 1236 False 584.500000 939 88.824000 3191 4611 2 chr2B.!!$F1 1420
3 TraesCS2D01G390400 chr2A 642568839 642574978 6139 True 1389.500000 4037 91.139167 1 6531 6 chr2A.!!$R2 6530
4 TraesCS2D01G390400 chr1B 117782137 117783580 1443 True 739.000000 1243 89.362000 3191 4818 2 chr1B.!!$R1 1627
5 TraesCS2D01G390400 chr3B 16703713 16705153 1440 True 553.000000 1238 88.663000 3194 4818 3 chr3B.!!$R1 1624
6 TraesCS2D01G390400 chr6B 16553739 16554660 921 True 1212.000000 1212 90.584000 3907 4818 1 chr6B.!!$R1 911
7 TraesCS2D01G390400 chr1D 18771775 18773225 1450 True 555.666667 1203 89.385667 3191 4818 3 chr1D.!!$R2 1627
8 TraesCS2D01G390400 chr3A 523893912 523894831 919 False 1181.000000 1181 90.130000 3912 4815 1 chr3A.!!$F1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
498 503 0.618968 AAGCTCAGGGAGGTTCGGAT 60.619 55.000 4.95 0.0 45.53 4.18 F
1470 1525 0.034186 AATTGATGAAGGGGCGCAGA 60.034 50.000 10.83 0.0 0.00 4.26 F
1725 1781 0.036875 AGGCTGTTTGGTAGCACTCC 59.963 55.000 0.00 0.0 42.88 3.85 F
2060 2197 0.242017 GCGCTCCAGCTGTTCAAAAT 59.758 50.000 13.81 0.0 39.32 1.82 F
3440 3660 1.132834 TGAATTGGCATGTCATGTCGC 59.867 47.619 12.62 0.0 37.81 5.19 F
4030 4362 0.037447 AGGAAGCACTCAAAGCCCTC 59.963 55.000 0.00 0.0 0.00 4.30 F
5107 5452 0.478072 TGTGGGCTCAGTTGAATGGT 59.522 50.000 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2303 0.026803 CTGCTACATTTTCGCTCCGC 59.973 55.000 0.00 0.00 0.00 5.54 R
3127 3310 0.324943 CGCTGGAGAAGGGGAGAAAA 59.675 55.000 0.00 0.00 35.22 2.29 R
3285 3468 1.052287 GAAAAGCAATCGCGTGGTTG 58.948 50.000 17.57 17.57 45.49 3.77 R
4030 4362 1.203994 CCAGGAAAAGAAGCATGCCAG 59.796 52.381 15.66 0.00 0.00 4.85 R
4757 5101 0.105913 TTTGCCCGAGGGAAAGGTTT 60.106 50.000 13.28 0.00 38.07 3.27 R
5548 5894 1.141449 CTCTCTCTCAAGCTGGCGG 59.859 63.158 0.00 0.00 0.00 6.13 R
6483 6844 0.391263 GTCCTTAGGGGCACTTCACG 60.391 60.000 0.00 0.00 37.14 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 98 3.003482 GCTTGCTCTTCCTGAATAGCATG 59.997 47.826 17.29 18.70 45.62 4.06
96 101 4.592942 TGCTCTTCCTGAATAGCATGTTT 58.407 39.130 13.88 0.00 42.88 2.83
97 102 4.397103 TGCTCTTCCTGAATAGCATGTTTG 59.603 41.667 13.88 0.00 42.88 2.93
244 249 3.846588 TGAAAGAAATAGAGGGTGGAGCT 59.153 43.478 0.00 0.00 0.00 4.09
257 262 2.289565 GTGGAGCTGCCTTTGTATACC 58.710 52.381 1.53 0.00 37.63 2.73
458 463 3.073650 AGGGATTAATCTGGTGATGGAGC 59.926 47.826 14.95 0.00 32.44 4.70
498 503 0.618968 AAGCTCAGGGAGGTTCGGAT 60.619 55.000 4.95 0.00 45.53 4.18
541 546 0.676782 GGAATCAACCAGTCCCACCG 60.677 60.000 0.00 0.00 32.57 4.94
554 559 3.326880 AGTCCCACCGTAGTTCAAAGAAT 59.673 43.478 0.00 0.00 0.00 2.40
555 560 3.683340 GTCCCACCGTAGTTCAAAGAATC 59.317 47.826 0.00 0.00 0.00 2.52
557 562 2.671396 CCACCGTAGTTCAAAGAATCCG 59.329 50.000 0.00 0.00 0.00 4.18
558 563 3.323243 CACCGTAGTTCAAAGAATCCGT 58.677 45.455 0.00 0.00 0.00 4.69
562 567 4.925054 CCGTAGTTCAAAGAATCCGTTACA 59.075 41.667 0.00 0.00 0.00 2.41
563 568 5.579511 CCGTAGTTCAAAGAATCCGTTACAT 59.420 40.000 0.00 0.00 0.00 2.29
564 569 6.091713 CCGTAGTTCAAAGAATCCGTTACATT 59.908 38.462 0.00 0.00 0.00 2.71
565 570 7.360607 CCGTAGTTCAAAGAATCCGTTACATTT 60.361 37.037 0.00 0.00 0.00 2.32
566 571 8.013378 CGTAGTTCAAAGAATCCGTTACATTTT 58.987 33.333 0.00 0.00 0.00 1.82
567 572 9.326339 GTAGTTCAAAGAATCCGTTACATTTTC 57.674 33.333 0.00 0.00 0.00 2.29
568 573 7.368059 AGTTCAAAGAATCCGTTACATTTTCC 58.632 34.615 0.00 0.00 0.00 3.13
589 594 7.833285 TTCCCTTTAAGCTTTCTGTTTGTAT 57.167 32.000 3.20 0.00 0.00 2.29
591 596 7.657336 TCCCTTTAAGCTTTCTGTTTGTATTG 58.343 34.615 3.20 0.00 0.00 1.90
604 609 8.450578 TCTGTTTGTATTGACATCTGTTTCTT 57.549 30.769 0.00 0.00 34.86 2.52
622 627 8.418597 TGTTTCTTGATAGTAACAGAGGTAGT 57.581 34.615 0.00 0.00 36.93 2.73
623 628 9.524496 TGTTTCTTGATAGTAACAGAGGTAGTA 57.476 33.333 0.00 0.00 36.93 1.82
625 630 9.750783 TTTCTTGATAGTAACAGAGGTAGTAGT 57.249 33.333 0.00 0.00 0.00 2.73
627 632 9.829507 TCTTGATAGTAACAGAGGTAGTAGTAC 57.170 37.037 0.00 0.00 0.00 2.73
628 633 9.835389 CTTGATAGTAACAGAGGTAGTAGTACT 57.165 37.037 8.14 8.14 0.00 2.73
662 667 5.682234 ATGTCTATGGATGTGTGAGTTCA 57.318 39.130 0.00 0.00 0.00 3.18
664 669 5.863965 TGTCTATGGATGTGTGAGTTCAAA 58.136 37.500 0.00 0.00 0.00 2.69
665 670 6.475504 TGTCTATGGATGTGTGAGTTCAAAT 58.524 36.000 0.00 0.00 0.00 2.32
702 710 6.681777 TCCAGTTGATGTACATCATAGATCG 58.318 40.000 33.23 20.12 46.12 3.69
760 769 4.616835 GCTTCGGTTTCATCAGCAAGAAAT 60.617 41.667 0.00 0.00 36.29 2.17
836 845 6.532657 GCATGGCCATATTTTATGCATAGAAC 59.467 38.462 20.30 0.00 42.63 3.01
839 848 6.095377 GGCCATATTTTATGCATAGAACAGC 58.905 40.000 11.55 11.27 0.00 4.40
945 954 2.224378 CCATGGTCAGTGTCTGTGAGTT 60.224 50.000 2.57 0.00 32.61 3.01
946 955 3.006859 CCATGGTCAGTGTCTGTGAGTTA 59.993 47.826 2.57 0.00 32.61 2.24
991 1000 7.170998 GTGATTGACAGATAAAGGTATAACCGG 59.829 40.741 0.00 0.00 44.90 5.28
1033 1056 0.454600 GCTCCATCATGTGCAAGGTG 59.545 55.000 0.00 0.00 0.00 4.00
1034 1057 1.830279 CTCCATCATGTGCAAGGTGT 58.170 50.000 0.00 0.00 0.00 4.16
1035 1058 2.940971 GCTCCATCATGTGCAAGGTGTA 60.941 50.000 0.00 0.00 0.00 2.90
1036 1059 2.679837 CTCCATCATGTGCAAGGTGTAC 59.320 50.000 0.00 0.00 33.42 2.90
1037 1060 2.305635 TCCATCATGTGCAAGGTGTACT 59.694 45.455 0.00 0.00 33.97 2.73
1038 1061 2.421073 CCATCATGTGCAAGGTGTACTG 59.579 50.000 0.00 0.00 33.97 2.74
1039 1062 3.337358 CATCATGTGCAAGGTGTACTGA 58.663 45.455 0.00 1.02 33.97 3.41
1040 1063 3.483808 TCATGTGCAAGGTGTACTGAA 57.516 42.857 0.00 0.00 33.97 3.02
1041 1064 3.814625 TCATGTGCAAGGTGTACTGAAA 58.185 40.909 0.00 0.00 33.97 2.69
1042 1065 3.814842 TCATGTGCAAGGTGTACTGAAAG 59.185 43.478 0.00 0.00 42.29 2.62
1043 1066 2.571212 TGTGCAAGGTGTACTGAAAGG 58.429 47.619 0.00 0.00 39.30 3.11
1044 1067 2.092646 TGTGCAAGGTGTACTGAAAGGT 60.093 45.455 0.00 0.00 39.30 3.50
1063 1086 2.630580 GGTACCCCTCTGATCACATCTC 59.369 54.545 0.00 0.00 0.00 2.75
1064 1087 2.864885 ACCCCTCTGATCACATCTCT 57.135 50.000 0.00 0.00 0.00 3.10
1065 1088 3.127791 ACCCCTCTGATCACATCTCTT 57.872 47.619 0.00 0.00 0.00 2.85
1068 1091 4.290722 ACCCCTCTGATCACATCTCTTTTT 59.709 41.667 0.00 0.00 0.00 1.94
1093 1116 6.443934 TTTTTGTTTCTTCCAGATCGTCAA 57.556 33.333 0.00 0.00 0.00 3.18
1094 1117 6.633500 TTTTGTTTCTTCCAGATCGTCAAT 57.367 33.333 0.00 0.00 0.00 2.57
1095 1118 7.737972 TTTTGTTTCTTCCAGATCGTCAATA 57.262 32.000 0.00 0.00 0.00 1.90
1096 1119 6.968131 TTGTTTCTTCCAGATCGTCAATAG 57.032 37.500 0.00 0.00 0.00 1.73
1097 1120 6.037786 TGTTTCTTCCAGATCGTCAATAGT 57.962 37.500 0.00 0.00 0.00 2.12
1098 1121 5.869344 TGTTTCTTCCAGATCGTCAATAGTG 59.131 40.000 0.00 0.00 0.00 2.74
1099 1122 5.661056 TTCTTCCAGATCGTCAATAGTGT 57.339 39.130 0.00 0.00 0.00 3.55
1100 1123 5.661056 TCTTCCAGATCGTCAATAGTGTT 57.339 39.130 0.00 0.00 0.00 3.32
1101 1124 5.410924 TCTTCCAGATCGTCAATAGTGTTG 58.589 41.667 0.00 0.00 0.00 3.33
1102 1125 4.801330 TCCAGATCGTCAATAGTGTTGT 57.199 40.909 0.00 0.00 0.00 3.32
1103 1126 5.147330 TCCAGATCGTCAATAGTGTTGTT 57.853 39.130 0.00 0.00 0.00 2.83
1104 1127 5.547465 TCCAGATCGTCAATAGTGTTGTTT 58.453 37.500 0.00 0.00 0.00 2.83
1105 1128 5.995282 TCCAGATCGTCAATAGTGTTGTTTT 59.005 36.000 0.00 0.00 0.00 2.43
1106 1129 6.485313 TCCAGATCGTCAATAGTGTTGTTTTT 59.515 34.615 0.00 0.00 0.00 1.94
1157 1180 3.285484 CTTGATCATTGGAGAACAGGGG 58.715 50.000 0.00 0.00 0.00 4.79
1158 1181 2.278245 TGATCATTGGAGAACAGGGGT 58.722 47.619 0.00 0.00 0.00 4.95
1185 1208 1.556451 CTGGACCATGGTCATGACTCA 59.444 52.381 38.83 26.72 46.20 3.41
1206 1229 1.751351 TGGAGCAGATGTAGGAAGTCG 59.249 52.381 0.00 0.00 0.00 4.18
1234 1257 3.010420 GGAAGATGCAACCAAGGTACTC 58.990 50.000 0.00 0.00 38.49 2.59
1277 1332 5.992829 TGAAGAACATTGCTACTTTCCGTAA 59.007 36.000 0.00 0.00 0.00 3.18
1327 1382 8.589701 TTTAATTTAGAAAAGGAGGATGACCC 57.410 34.615 0.00 0.00 36.73 4.46
1328 1383 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
1329 1384 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
1330 1385 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
1331 1386 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
1337 1392 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
1343 1398 2.844362 CCCCGGCCTCTGCATCTA 60.844 66.667 0.00 0.00 40.13 1.98
1344 1399 2.739784 CCCGGCCTCTGCATCTAG 59.260 66.667 0.00 0.00 40.13 2.43
1345 1400 2.739784 CCGGCCTCTGCATCTAGG 59.260 66.667 0.00 5.70 40.13 3.02
1357 1412 1.633561 CATCTAGGCGATGCATACGG 58.366 55.000 16.56 4.54 42.75 4.02
1362 1417 2.588877 GCGATGCATACGGCCACT 60.589 61.111 16.56 0.00 43.89 4.00
1363 1418 2.180204 GCGATGCATACGGCCACTT 61.180 57.895 16.56 0.00 43.89 3.16
1364 1419 1.714899 GCGATGCATACGGCCACTTT 61.715 55.000 16.56 0.00 43.89 2.66
1365 1420 1.577468 CGATGCATACGGCCACTTTA 58.423 50.000 2.24 0.00 43.89 1.85
1366 1421 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
1367 1422 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
1368 1423 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
1369 1424 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
1370 1425 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
1371 1426 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
1372 1427 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
1373 1428 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
1374 1429 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
1375 1430 8.293867 TGCATACGGCCACTTTATTAATTATTC 58.706 33.333 2.24 0.00 43.89 1.75
1376 1431 8.512138 GCATACGGCCACTTTATTAATTATTCT 58.488 33.333 2.24 0.00 36.11 2.40
1378 1433 9.787435 ATACGGCCACTTTATTAATTATTCTCA 57.213 29.630 2.24 0.00 0.00 3.27
1379 1434 7.927048 ACGGCCACTTTATTAATTATTCTCAC 58.073 34.615 2.24 0.00 0.00 3.51
1380 1435 7.554835 ACGGCCACTTTATTAATTATTCTCACA 59.445 33.333 2.24 0.00 0.00 3.58
1381 1436 8.402472 CGGCCACTTTATTAATTATTCTCACAA 58.598 33.333 2.24 0.00 0.00 3.33
1382 1437 9.736023 GGCCACTTTATTAATTATTCTCACAAG 57.264 33.333 0.00 0.00 0.00 3.16
1394 1449 5.948992 ATTCTCACAAGACCTTACAAAGC 57.051 39.130 0.00 0.00 0.00 3.51
1395 1450 3.740115 TCTCACAAGACCTTACAAAGCC 58.260 45.455 0.00 0.00 0.00 4.35
1396 1451 3.135712 TCTCACAAGACCTTACAAAGCCA 59.864 43.478 0.00 0.00 0.00 4.75
1397 1452 4.074970 CTCACAAGACCTTACAAAGCCAT 58.925 43.478 0.00 0.00 0.00 4.40
1398 1453 5.012664 TCTCACAAGACCTTACAAAGCCATA 59.987 40.000 0.00 0.00 0.00 2.74
1399 1454 5.001232 TCACAAGACCTTACAAAGCCATAC 58.999 41.667 0.00 0.00 0.00 2.39
1400 1455 4.759693 CACAAGACCTTACAAAGCCATACA 59.240 41.667 0.00 0.00 0.00 2.29
1401 1456 5.240623 CACAAGACCTTACAAAGCCATACAA 59.759 40.000 0.00 0.00 0.00 2.41
1402 1457 5.240844 ACAAGACCTTACAAAGCCATACAAC 59.759 40.000 0.00 0.00 0.00 3.32
1403 1458 4.980573 AGACCTTACAAAGCCATACAACA 58.019 39.130 0.00 0.00 0.00 3.33
1404 1459 5.003804 AGACCTTACAAAGCCATACAACAG 58.996 41.667 0.00 0.00 0.00 3.16
1405 1460 3.506067 ACCTTACAAAGCCATACAACAGC 59.494 43.478 0.00 0.00 0.00 4.40
1406 1461 3.505680 CCTTACAAAGCCATACAACAGCA 59.494 43.478 0.00 0.00 0.00 4.41
1407 1462 4.022416 CCTTACAAAGCCATACAACAGCAA 60.022 41.667 0.00 0.00 0.00 3.91
1408 1463 3.648339 ACAAAGCCATACAACAGCAAG 57.352 42.857 0.00 0.00 0.00 4.01
1409 1464 3.221771 ACAAAGCCATACAACAGCAAGA 58.778 40.909 0.00 0.00 0.00 3.02
1410 1465 3.004734 ACAAAGCCATACAACAGCAAGAC 59.995 43.478 0.00 0.00 0.00 3.01
1411 1466 2.867109 AGCCATACAACAGCAAGACT 57.133 45.000 0.00 0.00 0.00 3.24
1412 1467 3.981071 AGCCATACAACAGCAAGACTA 57.019 42.857 0.00 0.00 0.00 2.59
1413 1468 4.286297 AGCCATACAACAGCAAGACTAA 57.714 40.909 0.00 0.00 0.00 2.24
1414 1469 4.651778 AGCCATACAACAGCAAGACTAAA 58.348 39.130 0.00 0.00 0.00 1.85
1415 1470 4.697352 AGCCATACAACAGCAAGACTAAAG 59.303 41.667 0.00 0.00 0.00 1.85
1416 1471 4.672801 GCCATACAACAGCAAGACTAAAGC 60.673 45.833 0.00 0.00 0.00 3.51
1417 1472 4.142600 CCATACAACAGCAAGACTAAAGCC 60.143 45.833 0.00 0.00 0.00 4.35
1418 1473 2.930950 ACAACAGCAAGACTAAAGCCA 58.069 42.857 0.00 0.00 0.00 4.75
1419 1474 2.618709 ACAACAGCAAGACTAAAGCCAC 59.381 45.455 0.00 0.00 0.00 5.01
1420 1475 1.897560 ACAGCAAGACTAAAGCCACC 58.102 50.000 0.00 0.00 0.00 4.61
1421 1476 0.798776 CAGCAAGACTAAAGCCACCG 59.201 55.000 0.00 0.00 0.00 4.94
1422 1477 0.396811 AGCAAGACTAAAGCCACCGT 59.603 50.000 0.00 0.00 0.00 4.83
1423 1478 0.796927 GCAAGACTAAAGCCACCGTC 59.203 55.000 0.00 0.00 0.00 4.79
1424 1479 1.608283 GCAAGACTAAAGCCACCGTCT 60.608 52.381 0.00 0.00 38.29 4.18
1425 1480 2.353406 GCAAGACTAAAGCCACCGTCTA 60.353 50.000 0.00 0.00 35.82 2.59
1426 1481 3.863400 GCAAGACTAAAGCCACCGTCTAA 60.863 47.826 0.00 0.00 35.82 2.10
1427 1482 3.870633 AGACTAAAGCCACCGTCTAAG 57.129 47.619 0.00 0.00 35.15 2.18
1428 1483 2.094130 AGACTAAAGCCACCGTCTAAGC 60.094 50.000 0.00 0.00 35.15 3.09
1429 1484 1.621814 ACTAAAGCCACCGTCTAAGCA 59.378 47.619 0.00 0.00 0.00 3.91
1430 1485 2.038033 ACTAAAGCCACCGTCTAAGCAA 59.962 45.455 0.00 0.00 0.00 3.91
1431 1486 1.235724 AAAGCCACCGTCTAAGCAAC 58.764 50.000 0.00 0.00 0.00 4.17
1432 1487 0.107831 AAGCCACCGTCTAAGCAACA 59.892 50.000 0.00 0.00 0.00 3.33
1433 1488 0.107831 AGCCACCGTCTAAGCAACAA 59.892 50.000 0.00 0.00 0.00 2.83
1434 1489 0.237498 GCCACCGTCTAAGCAACAAC 59.763 55.000 0.00 0.00 0.00 3.32
1435 1490 1.878953 CCACCGTCTAAGCAACAACT 58.121 50.000 0.00 0.00 0.00 3.16
1436 1491 1.531149 CCACCGTCTAAGCAACAACTG 59.469 52.381 0.00 0.00 0.00 3.16
1437 1492 2.210116 CACCGTCTAAGCAACAACTGT 58.790 47.619 0.00 0.00 0.00 3.55
1438 1493 2.221055 CACCGTCTAAGCAACAACTGTC 59.779 50.000 0.00 0.00 0.00 3.51
1439 1494 1.455786 CCGTCTAAGCAACAACTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
1440 1495 1.136611 CGTCTAAGCAACAACTGTCGC 60.137 52.381 0.00 0.00 0.00 5.19
1441 1496 2.135933 GTCTAAGCAACAACTGTCGCT 58.864 47.619 0.00 0.00 35.90 4.93
1442 1497 3.314553 GTCTAAGCAACAACTGTCGCTA 58.685 45.455 0.00 0.00 33.45 4.26
1443 1498 3.121445 GTCTAAGCAACAACTGTCGCTAC 59.879 47.826 0.00 0.00 33.45 3.58
1444 1499 1.948104 AAGCAACAACTGTCGCTACA 58.052 45.000 0.00 0.00 33.45 2.74
1445 1500 1.217882 AGCAACAACTGTCGCTACAC 58.782 50.000 0.00 0.00 31.60 2.90
1446 1501 1.202533 AGCAACAACTGTCGCTACACT 60.203 47.619 0.00 0.00 31.60 3.55
1447 1502 2.035449 AGCAACAACTGTCGCTACACTA 59.965 45.455 0.00 0.00 31.60 2.74
1448 1503 2.993899 GCAACAACTGTCGCTACACTAT 59.006 45.455 0.00 0.00 0.00 2.12
1449 1504 3.060895 GCAACAACTGTCGCTACACTATC 59.939 47.826 0.00 0.00 0.00 2.08
1450 1505 3.505464 ACAACTGTCGCTACACTATCC 57.495 47.619 0.00 0.00 0.00 2.59
1451 1506 2.823747 ACAACTGTCGCTACACTATCCA 59.176 45.455 0.00 0.00 0.00 3.41
1452 1507 3.257375 ACAACTGTCGCTACACTATCCAA 59.743 43.478 0.00 0.00 0.00 3.53
1453 1508 4.081642 ACAACTGTCGCTACACTATCCAAT 60.082 41.667 0.00 0.00 0.00 3.16
1454 1509 4.737855 ACTGTCGCTACACTATCCAATT 57.262 40.909 0.00 0.00 0.00 2.32
1455 1510 4.433615 ACTGTCGCTACACTATCCAATTG 58.566 43.478 0.00 0.00 0.00 2.32
1456 1511 4.159693 ACTGTCGCTACACTATCCAATTGA 59.840 41.667 7.12 0.00 0.00 2.57
1457 1512 5.163405 ACTGTCGCTACACTATCCAATTGAT 60.163 40.000 7.12 1.44 37.49 2.57
1458 1513 5.049828 TGTCGCTACACTATCCAATTGATG 58.950 41.667 7.12 0.00 34.76 3.07
1459 1514 5.163457 TGTCGCTACACTATCCAATTGATGA 60.163 40.000 7.12 0.00 34.76 2.92
1460 1515 5.753438 GTCGCTACACTATCCAATTGATGAA 59.247 40.000 7.12 0.00 34.76 2.57
1461 1516 5.985530 TCGCTACACTATCCAATTGATGAAG 59.014 40.000 7.12 1.51 34.76 3.02
1462 1517 5.178252 CGCTACACTATCCAATTGATGAAGG 59.822 44.000 7.12 0.00 34.76 3.46
1463 1518 5.471456 GCTACACTATCCAATTGATGAAGGG 59.529 44.000 7.12 2.58 34.76 3.95
1464 1519 4.796606 ACACTATCCAATTGATGAAGGGG 58.203 43.478 7.12 0.00 34.76 4.79
1465 1520 3.571401 CACTATCCAATTGATGAAGGGGC 59.429 47.826 7.12 0.00 34.76 5.80
1466 1521 1.696063 ATCCAATTGATGAAGGGGCG 58.304 50.000 7.12 0.00 30.54 6.13
1467 1522 1.037030 TCCAATTGATGAAGGGGCGC 61.037 55.000 7.12 0.00 0.00 6.53
1468 1523 1.321805 CCAATTGATGAAGGGGCGCA 61.322 55.000 10.83 0.00 0.00 6.09
1469 1524 0.101759 CAATTGATGAAGGGGCGCAG 59.898 55.000 10.83 0.00 0.00 5.18
1470 1525 0.034186 AATTGATGAAGGGGCGCAGA 60.034 50.000 10.83 0.00 0.00 4.26
1471 1526 0.184451 ATTGATGAAGGGGCGCAGAT 59.816 50.000 10.83 0.00 0.00 2.90
1472 1527 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
1473 1528 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
1474 1529 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.000 10.83 0.00 0.00 2.12
1475 1530 0.394565 ATGAAGGGGCGCAGATAGTC 59.605 55.000 10.83 0.00 0.00 2.59
1476 1531 0.687757 TGAAGGGGCGCAGATAGTCT 60.688 55.000 10.83 0.00 0.00 3.24
1477 1532 0.249657 GAAGGGGCGCAGATAGTCTG 60.250 60.000 10.83 2.65 46.90 3.51
1478 1533 1.690219 AAGGGGCGCAGATAGTCTGG 61.690 60.000 10.83 1.19 44.43 3.86
1479 1534 2.280457 GGGCGCAGATAGTCTGGC 60.280 66.667 10.83 9.60 44.43 4.85
1480 1535 2.280457 GGCGCAGATAGTCTGGCC 60.280 66.667 10.83 17.53 46.03 5.36
1481 1536 2.818132 GCGCAGATAGTCTGGCCT 59.182 61.111 3.32 0.00 44.43 5.19
1482 1537 2.041976 GCGCAGATAGTCTGGCCTA 58.958 57.895 3.32 0.00 44.43 3.93
1483 1538 0.389391 GCGCAGATAGTCTGGCCTAA 59.611 55.000 3.32 0.00 44.43 2.69
1484 1539 1.001406 GCGCAGATAGTCTGGCCTAAT 59.999 52.381 3.32 0.00 44.43 1.73
1485 1540 2.231478 GCGCAGATAGTCTGGCCTAATA 59.769 50.000 3.32 0.00 44.43 0.98
1486 1541 3.839293 CGCAGATAGTCTGGCCTAATAC 58.161 50.000 3.32 0.00 44.43 1.89
1487 1542 3.367498 CGCAGATAGTCTGGCCTAATACC 60.367 52.174 3.32 0.00 44.43 2.73
1488 1543 3.578716 GCAGATAGTCTGGCCTAATACCA 59.421 47.826 3.32 0.00 44.43 3.25
1489 1544 4.040461 GCAGATAGTCTGGCCTAATACCAA 59.960 45.833 3.32 0.00 44.43 3.67
1490 1545 5.454755 GCAGATAGTCTGGCCTAATACCAAA 60.455 44.000 3.32 0.00 44.43 3.28
1491 1546 5.992217 CAGATAGTCTGGCCTAATACCAAAC 59.008 44.000 3.32 0.00 40.71 2.93
1492 1547 5.665812 AGATAGTCTGGCCTAATACCAAACA 59.334 40.000 3.32 0.00 36.56 2.83
1493 1548 4.222124 AGTCTGGCCTAATACCAAACAG 57.778 45.455 3.32 0.00 36.56 3.16
1494 1549 3.844211 AGTCTGGCCTAATACCAAACAGA 59.156 43.478 3.32 0.00 36.56 3.41
1495 1550 3.939592 GTCTGGCCTAATACCAAACAGAC 59.060 47.826 3.32 0.00 44.12 3.51
1496 1551 3.585289 TCTGGCCTAATACCAAACAGACA 59.415 43.478 3.32 0.00 36.56 3.41
1497 1552 4.227300 TCTGGCCTAATACCAAACAGACAT 59.773 41.667 3.32 0.00 36.56 3.06
1498 1553 4.523083 TGGCCTAATACCAAACAGACATC 58.477 43.478 3.32 0.00 33.12 3.06
1499 1554 4.018870 TGGCCTAATACCAAACAGACATCA 60.019 41.667 3.32 0.00 33.12 3.07
1500 1555 4.335594 GGCCTAATACCAAACAGACATCAC 59.664 45.833 0.00 0.00 0.00 3.06
1501 1556 4.941263 GCCTAATACCAAACAGACATCACA 59.059 41.667 0.00 0.00 0.00 3.58
1502 1557 5.065218 GCCTAATACCAAACAGACATCACAG 59.935 44.000 0.00 0.00 0.00 3.66
1503 1558 5.065218 CCTAATACCAAACAGACATCACAGC 59.935 44.000 0.00 0.00 0.00 4.40
1504 1559 1.609208 ACCAAACAGACATCACAGCC 58.391 50.000 0.00 0.00 0.00 4.85
1505 1560 1.133823 ACCAAACAGACATCACAGCCA 60.134 47.619 0.00 0.00 0.00 4.75
1506 1561 1.955778 CCAAACAGACATCACAGCCAA 59.044 47.619 0.00 0.00 0.00 4.52
1507 1562 2.361757 CCAAACAGACATCACAGCCAAA 59.638 45.455 0.00 0.00 0.00 3.28
1508 1563 3.374745 CAAACAGACATCACAGCCAAAC 58.625 45.455 0.00 0.00 0.00 2.93
1509 1564 1.609208 ACAGACATCACAGCCAAACC 58.391 50.000 0.00 0.00 0.00 3.27
1510 1565 1.143684 ACAGACATCACAGCCAAACCT 59.856 47.619 0.00 0.00 0.00 3.50
1511 1566 2.371841 ACAGACATCACAGCCAAACCTA 59.628 45.455 0.00 0.00 0.00 3.08
1512 1567 3.181445 ACAGACATCACAGCCAAACCTAA 60.181 43.478 0.00 0.00 0.00 2.69
1513 1568 3.820467 CAGACATCACAGCCAAACCTAAA 59.180 43.478 0.00 0.00 0.00 1.85
1514 1569 3.821033 AGACATCACAGCCAAACCTAAAC 59.179 43.478 0.00 0.00 0.00 2.01
1515 1570 3.561143 ACATCACAGCCAAACCTAAACA 58.439 40.909 0.00 0.00 0.00 2.83
1516 1571 4.151883 ACATCACAGCCAAACCTAAACAT 58.848 39.130 0.00 0.00 0.00 2.71
1517 1572 4.218417 ACATCACAGCCAAACCTAAACATC 59.782 41.667 0.00 0.00 0.00 3.06
1518 1573 4.098914 TCACAGCCAAACCTAAACATCT 57.901 40.909 0.00 0.00 0.00 2.90
1519 1574 5.235850 TCACAGCCAAACCTAAACATCTA 57.764 39.130 0.00 0.00 0.00 1.98
1520 1575 5.626142 TCACAGCCAAACCTAAACATCTAA 58.374 37.500 0.00 0.00 0.00 2.10
1521 1576 5.705441 TCACAGCCAAACCTAAACATCTAAG 59.295 40.000 0.00 0.00 0.00 2.18
1522 1577 5.705441 CACAGCCAAACCTAAACATCTAAGA 59.295 40.000 0.00 0.00 0.00 2.10
1523 1578 5.705905 ACAGCCAAACCTAAACATCTAAGAC 59.294 40.000 0.00 0.00 0.00 3.01
1524 1579 5.123979 CAGCCAAACCTAAACATCTAAGACC 59.876 44.000 0.00 0.00 0.00 3.85
1525 1580 5.014228 AGCCAAACCTAAACATCTAAGACCT 59.986 40.000 0.00 0.00 0.00 3.85
1526 1581 5.123979 GCCAAACCTAAACATCTAAGACCTG 59.876 44.000 0.00 0.00 0.00 4.00
1527 1582 6.472887 CCAAACCTAAACATCTAAGACCTGA 58.527 40.000 0.00 0.00 0.00 3.86
1528 1583 6.595716 CCAAACCTAAACATCTAAGACCTGAG 59.404 42.308 0.00 0.00 0.00 3.35
1529 1584 5.941555 ACCTAAACATCTAAGACCTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
1530 1585 5.342866 ACCTAAACATCTAAGACCTGAGGT 58.657 41.667 2.41 2.41 39.44 3.85
1592 1647 5.437191 AAGGTGGACTATAACAAAGGAGG 57.563 43.478 0.00 0.00 0.00 4.30
1593 1648 4.436079 AGGTGGACTATAACAAAGGAGGT 58.564 43.478 0.00 0.00 0.00 3.85
1594 1649 4.470304 AGGTGGACTATAACAAAGGAGGTC 59.530 45.833 0.00 0.00 0.00 3.85
1595 1650 4.430908 GTGGACTATAACAAAGGAGGTCG 58.569 47.826 0.00 0.00 0.00 4.79
1596 1651 3.118884 TGGACTATAACAAAGGAGGTCGC 60.119 47.826 0.00 0.00 0.00 5.19
1603 1658 1.247567 CAAAGGAGGTCGCACCATTT 58.752 50.000 7.86 3.77 41.95 2.32
1717 1773 1.133513 TCCATGAACAGGCTGTTTGGT 60.134 47.619 33.86 21.93 41.28 3.67
1720 1776 1.604604 TGAACAGGCTGTTTGGTAGC 58.395 50.000 31.60 18.79 41.28 3.58
1723 1779 0.474184 ACAGGCTGTTTGGTAGCACT 59.526 50.000 15.88 0.00 42.88 4.40
1724 1780 1.160137 CAGGCTGTTTGGTAGCACTC 58.840 55.000 6.28 0.00 42.88 3.51
1725 1781 0.036875 AGGCTGTTTGGTAGCACTCC 59.963 55.000 0.00 0.00 42.88 3.85
1726 1782 0.250727 GGCTGTTTGGTAGCACTCCA 60.251 55.000 0.00 0.00 42.88 3.86
1727 1783 1.614317 GGCTGTTTGGTAGCACTCCAT 60.614 52.381 0.00 0.00 42.88 3.41
1728 1784 2.162681 GCTGTTTGGTAGCACTCCATT 58.837 47.619 0.00 0.00 40.81 3.16
1729 1785 2.162408 GCTGTTTGGTAGCACTCCATTC 59.838 50.000 0.00 0.00 40.81 2.67
1730 1786 3.679389 CTGTTTGGTAGCACTCCATTCT 58.321 45.455 0.00 0.00 34.75 2.40
1731 1787 4.832248 CTGTTTGGTAGCACTCCATTCTA 58.168 43.478 0.00 0.00 34.75 2.10
1732 1788 5.235850 TGTTTGGTAGCACTCCATTCTAA 57.764 39.130 0.00 0.00 34.75 2.10
1733 1789 5.001232 TGTTTGGTAGCACTCCATTCTAAC 58.999 41.667 0.00 0.00 34.75 2.34
1734 1790 5.221843 TGTTTGGTAGCACTCCATTCTAACT 60.222 40.000 0.00 0.00 34.75 2.24
1735 1791 6.014070 TGTTTGGTAGCACTCCATTCTAACTA 60.014 38.462 0.00 0.00 34.75 2.24
1736 1792 6.808321 TTGGTAGCACTCCATTCTAACTAT 57.192 37.500 0.00 0.00 34.75 2.12
1737 1793 6.161855 TGGTAGCACTCCATTCTAACTATG 57.838 41.667 0.00 0.00 0.00 2.23
1738 1794 4.991687 GGTAGCACTCCATTCTAACTATGC 59.008 45.833 0.00 0.00 0.00 3.14
1739 1795 4.760530 AGCACTCCATTCTAACTATGCA 57.239 40.909 0.00 0.00 34.27 3.96
1740 1796 5.102953 AGCACTCCATTCTAACTATGCAA 57.897 39.130 0.00 0.00 34.27 4.08
1741 1797 5.688807 AGCACTCCATTCTAACTATGCAAT 58.311 37.500 0.00 0.00 34.27 3.56
1742 1798 5.762218 AGCACTCCATTCTAACTATGCAATC 59.238 40.000 0.00 0.00 34.27 2.67
1743 1799 5.528690 GCACTCCATTCTAACTATGCAATCA 59.471 40.000 0.00 0.00 0.00 2.57
1744 1800 6.512415 GCACTCCATTCTAACTATGCAATCAC 60.512 42.308 0.00 0.00 0.00 3.06
1745 1801 5.755375 ACTCCATTCTAACTATGCAATCACG 59.245 40.000 0.00 0.00 0.00 4.35
1746 1802 4.511454 TCCATTCTAACTATGCAATCACGC 59.489 41.667 0.00 0.00 0.00 5.34
1747 1803 4.512944 CCATTCTAACTATGCAATCACGCT 59.487 41.667 0.00 0.00 0.00 5.07
1748 1804 5.008019 CCATTCTAACTATGCAATCACGCTT 59.992 40.000 0.00 0.00 0.00 4.68
1749 1805 6.458751 CCATTCTAACTATGCAATCACGCTTT 60.459 38.462 0.00 0.00 0.00 3.51
1750 1806 7.254761 CCATTCTAACTATGCAATCACGCTTTA 60.255 37.037 0.00 0.00 0.00 1.85
1751 1807 7.786178 TTCTAACTATGCAATCACGCTTTAT 57.214 32.000 0.00 0.00 0.00 1.40
1752 1808 7.177498 TCTAACTATGCAATCACGCTTTATG 57.823 36.000 0.00 0.00 0.00 1.90
1753 1809 5.818136 AACTATGCAATCACGCTTTATGT 57.182 34.783 0.00 0.00 0.00 2.29
1754 1810 5.818136 ACTATGCAATCACGCTTTATGTT 57.182 34.783 0.00 0.00 0.00 2.71
1755 1811 6.194796 ACTATGCAATCACGCTTTATGTTT 57.805 33.333 0.00 0.00 0.00 2.83
1756 1812 6.029607 ACTATGCAATCACGCTTTATGTTTG 58.970 36.000 0.00 0.00 32.33 2.93
1757 1813 3.573598 TGCAATCACGCTTTATGTTTGG 58.426 40.909 0.00 0.00 30.65 3.28
1758 1814 3.254411 TGCAATCACGCTTTATGTTTGGA 59.746 39.130 0.00 0.00 30.65 3.53
1759 1815 3.853671 GCAATCACGCTTTATGTTTGGAG 59.146 43.478 0.00 0.00 30.65 3.86
1760 1816 4.615912 GCAATCACGCTTTATGTTTGGAGT 60.616 41.667 0.00 0.00 30.65 3.85
1761 1817 5.391523 GCAATCACGCTTTATGTTTGGAGTA 60.392 40.000 0.00 0.00 30.65 2.59
1762 1818 5.796350 ATCACGCTTTATGTTTGGAGTAC 57.204 39.130 0.00 0.00 0.00 2.73
1763 1819 4.633175 TCACGCTTTATGTTTGGAGTACA 58.367 39.130 0.00 0.00 0.00 2.90
1764 1820 5.057819 TCACGCTTTATGTTTGGAGTACAA 58.942 37.500 0.00 0.00 37.28 2.41
1765 1821 5.178623 TCACGCTTTATGTTTGGAGTACAAG 59.821 40.000 0.00 0.00 40.82 3.16
1766 1822 4.083484 ACGCTTTATGTTTGGAGTACAAGC 60.083 41.667 0.00 0.00 40.82 4.01
1767 1823 4.154195 CGCTTTATGTTTGGAGTACAAGCT 59.846 41.667 3.40 0.00 40.52 3.74
1768 1824 5.350365 CGCTTTATGTTTGGAGTACAAGCTA 59.650 40.000 3.40 0.00 40.52 3.32
1769 1825 6.128391 CGCTTTATGTTTGGAGTACAAGCTAA 60.128 38.462 3.40 0.00 40.52 3.09
1770 1826 7.572353 CGCTTTATGTTTGGAGTACAAGCTAAA 60.572 37.037 3.40 5.34 40.52 1.85
1817 1876 3.243068 GGTGGGAATTATCGTGTTGATGC 60.243 47.826 0.00 0.00 37.99 3.91
1852 1928 1.757118 TCTAAACTGGCTATGCTCGCT 59.243 47.619 0.00 0.00 0.00 4.93
1947 2023 1.135774 GCCGTTACCTTTGCAAGTAGC 60.136 52.381 0.00 0.99 45.96 3.58
1977 2053 5.934935 TTTCTCCCGTTACTTTTGCTAAG 57.065 39.130 0.00 0.00 0.00 2.18
2058 2195 2.260869 GGCGCTCCAGCTGTTCAAA 61.261 57.895 13.81 0.00 39.32 2.69
2060 2197 0.242017 GCGCTCCAGCTGTTCAAAAT 59.758 50.000 13.81 0.00 39.32 1.82
2061 2198 1.468520 GCGCTCCAGCTGTTCAAAATA 59.531 47.619 13.81 0.00 39.32 1.40
2065 2206 5.163513 CGCTCCAGCTGTTCAAAATAAAAT 58.836 37.500 13.81 0.00 39.32 1.82
2086 2227 2.462456 AAATCAGCAAGCTCGACTCA 57.538 45.000 0.00 0.00 0.00 3.41
2092 2233 3.928992 TCAGCAAGCTCGACTCAAAATAG 59.071 43.478 0.00 0.00 0.00 1.73
2118 2259 9.403110 GATAAATAAATGAGCAAGCTAATGTGG 57.597 33.333 0.00 0.00 0.00 4.17
2150 2303 1.643292 CAGACATACGGCCAATGCG 59.357 57.895 13.68 0.00 38.85 4.73
2174 2328 4.270084 CGGAGCGAAAATGTAGCAGAATTA 59.730 41.667 0.00 0.00 0.00 1.40
2291 2456 3.225104 GAATCATGGGCTAATTGCAGGA 58.775 45.455 0.00 0.00 45.15 3.86
2495 2660 5.241728 GGAGATAAGAGAAGGAGAGAAGAGC 59.758 48.000 0.00 0.00 0.00 4.09
2924 3097 3.827898 GCACCGTCGGAGGAGGAG 61.828 72.222 20.51 0.00 34.73 3.69
2938 3111 2.018086 AGGAGGAGGGAGGAGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
2939 3112 2.612251 GAGGAGGGAGGAGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
3108 3291 1.372997 TTCAGAGGCTGACGAACGC 60.373 57.895 0.00 0.00 40.46 4.84
3269 3452 3.414700 CAGGTGAACGGTGCTCGC 61.415 66.667 0.23 0.00 43.89 5.03
3285 3468 3.309682 TGCTCGCTATTTGTTGATGTAGC 59.690 43.478 0.00 0.00 36.95 3.58
3288 3471 5.216566 TCGCTATTTGTTGATGTAGCAAC 57.783 39.130 6.08 6.08 46.33 4.17
3386 3574 7.317390 TGTATTTGTGCTTAGATTACGACAGA 58.683 34.615 0.00 0.00 0.00 3.41
3440 3660 1.132834 TGAATTGGCATGTCATGTCGC 59.867 47.619 12.62 0.00 37.81 5.19
3516 3737 8.256356 AGAAGCTTCCTATATGACAGTAATGT 57.744 34.615 22.81 0.00 0.00 2.71
3588 3809 6.543465 TGAGGTGCCTTATGATAGTCAAAATG 59.457 38.462 0.00 0.00 0.00 2.32
3593 3814 6.994496 TGCCTTATGATAGTCAAAATGGAGAG 59.006 38.462 0.00 0.00 0.00 3.20
3643 3877 2.139917 GATTGTCGGTTGTAGTGTGCA 58.860 47.619 0.00 0.00 0.00 4.57
3764 3998 1.160137 GGCCAGTGTTGTCTGACATC 58.840 55.000 11.86 11.42 37.61 3.06
3791 4025 5.313280 AGTGTGGTACCTAACAAAATGGA 57.687 39.130 14.36 0.00 0.00 3.41
3796 4030 4.461081 TGGTACCTAACAAAATGGATGTGC 59.539 41.667 14.36 0.00 0.00 4.57
3797 4031 4.705023 GGTACCTAACAAAATGGATGTGCT 59.295 41.667 4.06 0.00 0.00 4.40
3820 4054 7.279536 TGCTCTCTCATGTTTGCTTTAATAGAG 59.720 37.037 0.00 0.00 0.00 2.43
3905 4139 4.222366 AGTTTAGTTAGACTACTGTGCCCC 59.778 45.833 0.00 0.00 28.93 5.80
3909 4233 3.268856 AGTTAGACTACTGTGCCCCTAGA 59.731 47.826 0.00 0.00 0.00 2.43
3959 4283 8.763049 TTATATCGATCTAGCAAACCTGAATG 57.237 34.615 0.00 0.00 0.00 2.67
4030 4362 0.037447 AGGAAGCACTCAAAGCCCTC 59.963 55.000 0.00 0.00 0.00 4.30
4152 4484 5.182380 GGTATTGTTTCGTTCCTTCATTCCA 59.818 40.000 0.00 0.00 0.00 3.53
4165 4497 2.170166 TCATTCCAACACATGCCCTTC 58.830 47.619 0.00 0.00 0.00 3.46
4167 4499 2.307496 TTCCAACACATGCCCTTCAT 57.693 45.000 0.00 0.00 35.31 2.57
4293 4629 9.307121 CTAAGAACTATCCAGTGAGTACAAATG 57.693 37.037 0.00 0.00 34.36 2.32
4313 4649 8.303876 ACAAATGCCTTTACTTAAATACTGGTG 58.696 33.333 0.00 0.00 0.00 4.17
4398 4735 5.365314 AGGGAAGAATCTAAGGACTCATGTC 59.635 44.000 0.00 0.00 42.22 3.06
4401 4738 6.928492 GGAAGAATCTAAGGACTCATGTCATC 59.072 42.308 0.00 0.00 44.61 2.92
4709 5053 3.250762 TGATCTTCAAGCAGGTTTGTTCG 59.749 43.478 0.00 0.00 0.00 3.95
4893 5238 5.324409 TGATTGGAGCAGTGTTCCTAAATT 58.676 37.500 24.48 4.83 35.67 1.82
4929 5274 7.834068 ACAGTCTACTATAACATTTGTGCAG 57.166 36.000 0.00 0.00 0.00 4.41
4930 5275 7.386851 ACAGTCTACTATAACATTTGTGCAGT 58.613 34.615 0.00 0.00 0.00 4.40
4969 5314 5.665812 TGGCTACTATATGGACCTTTTGTCT 59.334 40.000 0.00 0.00 43.89 3.41
4979 5324 7.872113 ATGGACCTTTTGTCTCAGAATAATC 57.128 36.000 0.00 0.00 43.89 1.75
5016 5361 7.715265 AGTTTTATGCGGTAATCTACATCAG 57.285 36.000 0.00 0.00 0.00 2.90
5035 5380 7.624549 ACATCAGTTGTAGGTAATTCATGACT 58.375 34.615 0.00 0.00 36.57 3.41
5036 5381 7.550551 ACATCAGTTGTAGGTAATTCATGACTG 59.449 37.037 0.00 0.00 36.57 3.51
5107 5452 0.478072 TGTGGGCTCAGTTGAATGGT 59.522 50.000 0.00 0.00 0.00 3.55
5181 5526 8.087750 CAGTTGAAGACTTGGCCATAAATAAAA 58.912 33.333 6.09 0.00 36.10 1.52
5277 5623 1.145377 CTTATTACGGGCGGCCTGT 59.855 57.895 33.93 33.93 46.08 4.00
5283 5629 4.530857 CGGGCGGCCTGTTCCTAG 62.531 72.222 27.04 3.38 0.00 3.02
5314 5660 6.676558 TGTAAGTGTACCCCTAGCTACTAAT 58.323 40.000 0.00 0.00 0.00 1.73
5315 5661 7.815383 TGTAAGTGTACCCCTAGCTACTAATA 58.185 38.462 0.00 0.00 0.00 0.98
5316 5662 8.281531 TGTAAGTGTACCCCTAGCTACTAATAA 58.718 37.037 0.00 0.00 0.00 1.40
5548 5894 5.560148 CAGACTGTTATTAAATCCACACGC 58.440 41.667 0.00 0.00 0.00 5.34
5737 6083 2.857748 GTGCTTGTGTGGTTTTTGCTAC 59.142 45.455 0.00 0.00 0.00 3.58
6092 6445 7.290813 AGACCACTTCAAAAATAAGAGAGGTT 58.709 34.615 0.00 0.00 31.97 3.50
6273 6627 6.765036 TGTCATTCAATATTTCAGAGCCTCTC 59.235 38.462 0.00 0.00 0.00 3.20
6275 6629 7.171337 GTCATTCAATATTTCAGAGCCTCTCTC 59.829 40.741 0.00 0.00 38.99 3.20
6285 6639 3.118905 GAGCCTCTCTCTCTCTCTCTC 57.881 57.143 0.00 0.00 38.78 3.20
6286 6640 2.703007 GAGCCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 38.78 3.10
6287 6641 2.703007 AGCCTCTCTCTCTCTCTCTCTC 59.297 54.545 0.00 0.00 0.00 3.20
6288 6642 2.703007 GCCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
6289 6643 3.244044 GCCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
6290 6644 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
6291 6645 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
6292 6646 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
6293 6647 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
6294 6648 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
6295 6649 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
6296 6650 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
6297 6651 6.441924 TCTCTCTCTCTCTCTCTCTCTCTTTT 59.558 42.308 0.00 0.00 0.00 2.27
6298 6652 6.644347 TCTCTCTCTCTCTCTCTCTCTTTTC 58.356 44.000 0.00 0.00 0.00 2.29
6404 6759 1.209128 GCACATAGATCACCGAACGG 58.791 55.000 11.83 11.83 42.03 4.44
6483 6844 1.443194 CAAGCCTTCATGCACGTGC 60.443 57.895 33.11 33.11 42.50 5.34
6485 6846 3.726517 GCCTTCATGCACGTGCGT 61.727 61.111 33.22 31.21 45.83 5.24
6510 6871 0.826672 GCCCCTAAGGACTAGCGCTA 60.827 60.000 17.75 17.75 38.24 4.26
6531 6892 1.369091 GGAGCCGCATTCGTCATTGT 61.369 55.000 0.00 0.00 0.00 2.71
6532 6893 0.447801 GAGCCGCATTCGTCATTGTT 59.552 50.000 0.00 0.00 0.00 2.83
6533 6894 1.663643 GAGCCGCATTCGTCATTGTTA 59.336 47.619 0.00 0.00 0.00 2.41
6534 6895 2.080693 AGCCGCATTCGTCATTGTTAA 58.919 42.857 0.00 0.00 0.00 2.01
6535 6896 2.486203 AGCCGCATTCGTCATTGTTAAA 59.514 40.909 0.00 0.00 0.00 1.52
6536 6897 2.592459 GCCGCATTCGTCATTGTTAAAC 59.408 45.455 0.00 0.00 0.00 2.01
6537 6898 3.168193 CCGCATTCGTCATTGTTAAACC 58.832 45.455 0.00 0.00 0.00 3.27
6538 6899 3.119990 CCGCATTCGTCATTGTTAAACCT 60.120 43.478 0.00 0.00 0.00 3.50
6539 6900 4.472286 CGCATTCGTCATTGTTAAACCTT 58.528 39.130 0.00 0.00 0.00 3.50
6540 6901 4.915085 CGCATTCGTCATTGTTAAACCTTT 59.085 37.500 0.00 0.00 0.00 3.11
6541 6902 6.081049 CGCATTCGTCATTGTTAAACCTTTA 58.919 36.000 0.00 0.00 0.00 1.85
6542 6903 6.579292 CGCATTCGTCATTGTTAAACCTTTAA 59.421 34.615 0.00 0.00 0.00 1.52
6543 6904 7.113684 CGCATTCGTCATTGTTAAACCTTTAAA 59.886 33.333 0.00 0.00 34.71 1.52
6544 6905 8.921670 GCATTCGTCATTGTTAAACCTTTAAAT 58.078 29.630 0.00 0.00 34.71 1.40
6549 6910 8.846607 CGTCATTGTTAAACCTTTAAATAGTGC 58.153 33.333 0.00 0.00 34.71 4.40
6550 6911 9.685828 GTCATTGTTAAACCTTTAAATAGTGCA 57.314 29.630 0.00 0.00 34.71 4.57
6554 6915 8.958175 TGTTAAACCTTTAAATAGTGCATTCG 57.042 30.769 0.00 0.00 34.71 3.34
6555 6916 8.569641 TGTTAAACCTTTAAATAGTGCATTCGT 58.430 29.630 0.00 0.00 34.71 3.85
6556 6917 9.058424 GTTAAACCTTTAAATAGTGCATTCGTC 57.942 33.333 0.00 0.00 34.71 4.20
6557 6918 6.811253 AACCTTTAAATAGTGCATTCGTCA 57.189 33.333 0.00 0.00 0.00 4.35
6558 6919 6.178239 ACCTTTAAATAGTGCATTCGTCAC 57.822 37.500 0.00 0.00 34.80 3.67
6566 6927 6.985188 ATAGTGCATTCGTCACTGTTAAAT 57.015 33.333 5.96 0.00 43.85 1.40
6599 6960 4.025040 TCTCAAGCATCAGACACCAAAT 57.975 40.909 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.247173 GCGTGAAAGAATATCTGCTGAGG 59.753 47.826 0.00 0.00 0.00 3.86
17 18 4.759693 TGGTTCTTGTGCGTGAAAGAATAT 59.240 37.500 10.35 0.00 42.62 1.28
76 79 6.506500 AACAAACATGCTATTCAGGAAGAG 57.493 37.500 0.00 0.00 33.10 2.85
93 98 5.221362 ACAGGGGTATTACTGCAAAACAAAC 60.221 40.000 0.00 0.00 38.25 2.93
96 101 4.107127 ACAGGGGTATTACTGCAAAACA 57.893 40.909 0.00 0.00 38.25 2.83
97 102 4.521256 TCAACAGGGGTATTACTGCAAAAC 59.479 41.667 0.00 0.00 38.25 2.43
244 249 2.869101 TGCACAGGTATACAAAGGCA 57.131 45.000 5.01 6.34 0.00 4.75
310 315 1.074926 GAGCATCTCCTCCTCCCCA 60.075 63.158 0.00 0.00 0.00 4.96
458 463 1.065701 CCCGTCAGTTCCATAGTCTCG 59.934 57.143 0.00 0.00 0.00 4.04
498 503 3.550639 CCTGCGCTTGATTTCAGTTTTCA 60.551 43.478 9.73 0.00 0.00 2.69
541 546 9.326339 GAAAATGTAACGGATTCTTTGAACTAC 57.674 33.333 0.00 0.00 0.00 2.73
554 559 5.318630 AGCTTAAAGGGAAAATGTAACGGA 58.681 37.500 0.00 0.00 0.00 4.69
555 560 5.638596 AGCTTAAAGGGAAAATGTAACGG 57.361 39.130 0.00 0.00 0.00 4.44
557 562 8.141909 ACAGAAAGCTTAAAGGGAAAATGTAAC 58.858 33.333 0.00 0.00 0.00 2.50
558 563 8.245195 ACAGAAAGCTTAAAGGGAAAATGTAA 57.755 30.769 0.00 0.00 0.00 2.41
562 567 7.564793 ACAAACAGAAAGCTTAAAGGGAAAAT 58.435 30.769 0.00 0.00 0.00 1.82
563 568 6.941857 ACAAACAGAAAGCTTAAAGGGAAAA 58.058 32.000 0.00 0.00 0.00 2.29
564 569 6.538945 ACAAACAGAAAGCTTAAAGGGAAA 57.461 33.333 0.00 0.00 0.00 3.13
565 570 7.833285 ATACAAACAGAAAGCTTAAAGGGAA 57.167 32.000 0.00 0.00 0.00 3.97
566 571 7.504238 TCAATACAAACAGAAAGCTTAAAGGGA 59.496 33.333 0.00 0.00 0.00 4.20
567 572 7.595130 GTCAATACAAACAGAAAGCTTAAAGGG 59.405 37.037 0.00 0.00 0.00 3.95
568 573 8.134895 TGTCAATACAAACAGAAAGCTTAAAGG 58.865 33.333 0.00 0.00 30.91 3.11
609 614 7.226523 GCTCCTAAGTACTACTACCTCTGTTAC 59.773 44.444 0.00 0.00 0.00 2.50
612 617 5.191323 TGCTCCTAAGTACTACTACCTCTGT 59.809 44.000 0.00 0.00 0.00 3.41
613 618 5.682659 TGCTCCTAAGTACTACTACCTCTG 58.317 45.833 0.00 0.00 0.00 3.35
615 620 8.688747 TTATTGCTCCTAAGTACTACTACCTC 57.311 38.462 0.00 0.00 0.00 3.85
616 621 9.080097 CATTATTGCTCCTAAGTACTACTACCT 57.920 37.037 0.00 0.00 0.00 3.08
617 622 8.858094 ACATTATTGCTCCTAAGTACTACTACC 58.142 37.037 0.00 0.00 0.00 3.18
618 623 9.896263 GACATTATTGCTCCTAAGTACTACTAC 57.104 37.037 0.00 0.00 0.00 2.73
619 624 9.863650 AGACATTATTGCTCCTAAGTACTACTA 57.136 33.333 0.00 0.00 0.00 1.82
620 625 8.770010 AGACATTATTGCTCCTAAGTACTACT 57.230 34.615 0.00 0.00 0.00 2.57
623 628 8.589338 CCATAGACATTATTGCTCCTAAGTACT 58.411 37.037 0.00 0.00 0.00 2.73
624 629 8.585881 TCCATAGACATTATTGCTCCTAAGTAC 58.414 37.037 0.00 0.00 0.00 2.73
625 630 8.721133 TCCATAGACATTATTGCTCCTAAGTA 57.279 34.615 0.00 0.00 0.00 2.24
626 631 7.618019 TCCATAGACATTATTGCTCCTAAGT 57.382 36.000 0.00 0.00 0.00 2.24
627 632 8.099537 ACATCCATAGACATTATTGCTCCTAAG 58.900 37.037 0.00 0.00 0.00 2.18
628 633 7.879677 CACATCCATAGACATTATTGCTCCTAA 59.120 37.037 0.00 0.00 0.00 2.69
665 670 9.542462 GTACATCAACTGGAGCACTATTTTATA 57.458 33.333 0.00 0.00 0.00 0.98
839 848 9.750125 GGCCTAAATTAACCATTCTAAATTGAG 57.250 33.333 0.00 0.00 0.00 3.02
945 954 8.946085 CAATCACAGTAGTTCAGGCTATTTTTA 58.054 33.333 0.00 0.00 0.00 1.52
946 955 7.665559 TCAATCACAGTAGTTCAGGCTATTTTT 59.334 33.333 0.00 0.00 0.00 1.94
991 1000 8.159344 AGCCTGATAGCTAACATTTTTGTATC 57.841 34.615 3.95 0.00 42.70 2.24
1043 1066 3.571590 AGAGATGTGATCAGAGGGGTAC 58.428 50.000 0.00 0.00 0.00 3.34
1044 1067 3.981516 AGAGATGTGATCAGAGGGGTA 57.018 47.619 0.00 0.00 0.00 3.69
1079 1102 5.171476 ACAACACTATTGACGATCTGGAAG 58.829 41.667 0.00 0.00 0.00 3.46
1082 1105 5.862924 AAACAACACTATTGACGATCTGG 57.137 39.130 0.00 0.00 0.00 3.86
1111 1134 9.899661 AGCTAAGTAAACATTATATCCACAACA 57.100 29.630 0.00 0.00 0.00 3.33
1130 1153 5.809001 TGTTCTCCAATGATCAAGCTAAGT 58.191 37.500 0.00 0.00 0.00 2.24
1143 1166 0.405585 CCACACCCCTGTTCTCCAAT 59.594 55.000 0.00 0.00 0.00 3.16
1157 1180 1.002134 CCATGGTCCAGGTCCACAC 60.002 63.158 7.70 0.00 37.81 3.82
1158 1181 1.463214 ACCATGGTCCAGGTCCACA 60.463 57.895 13.00 0.00 37.81 4.17
1185 1208 2.363680 CGACTTCCTACATCTGCTCCAT 59.636 50.000 0.00 0.00 0.00 3.41
1206 1229 1.888512 TGGTTGCATCTTCCAAAGCTC 59.111 47.619 0.00 0.00 0.00 4.09
1234 1257 5.466728 TCTTCATCGTCTTTCTCAAGGTTTG 59.533 40.000 0.00 0.00 0.00 2.93
1303 1358 7.123383 GGGGTCATCCTCCTTTTCTAAATTAA 58.877 38.462 0.00 0.00 35.33 1.40
1304 1359 6.669631 GGGGTCATCCTCCTTTTCTAAATTA 58.330 40.000 0.00 0.00 35.33 1.40
1305 1360 5.519808 GGGGTCATCCTCCTTTTCTAAATT 58.480 41.667 0.00 0.00 35.33 1.82
1307 1362 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
1320 1375 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
1326 1381 2.844362 TAGATGCAGAGGCCGGGG 60.844 66.667 2.18 0.00 40.13 5.73
1327 1382 2.739784 CTAGATGCAGAGGCCGGG 59.260 66.667 2.18 0.00 40.13 5.73
1328 1383 2.739784 CCTAGATGCAGAGGCCGG 59.260 66.667 0.00 0.00 40.13 6.13
1339 1394 0.108615 GCCGTATGCATCGCCTAGAT 60.109 55.000 0.19 0.00 41.01 1.98
1340 1395 1.289066 GCCGTATGCATCGCCTAGA 59.711 57.895 0.19 0.00 40.77 2.43
1341 1396 1.738099 GGCCGTATGCATCGCCTAG 60.738 63.158 19.92 6.63 43.89 3.02
1342 1397 2.342279 GGCCGTATGCATCGCCTA 59.658 61.111 19.92 0.00 43.89 3.93
1343 1398 3.860605 TGGCCGTATGCATCGCCT 61.861 61.111 24.73 0.00 43.89 5.52
1344 1399 3.649986 GTGGCCGTATGCATCGCC 61.650 66.667 20.23 20.23 43.89 5.54
1345 1400 1.714899 AAAGTGGCCGTATGCATCGC 61.715 55.000 0.19 3.34 43.89 4.58
1346 1401 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
1347 1402 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
1348 1403 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
1349 1404 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
1350 1405 8.512138 AGAATAATTAATAAAGTGGCCGTATGC 58.488 33.333 0.00 0.00 40.16 3.14
1352 1407 9.787435 TGAGAATAATTAATAAAGTGGCCGTAT 57.213 29.630 0.00 0.00 0.00 3.06
1353 1408 9.048446 GTGAGAATAATTAATAAAGTGGCCGTA 57.952 33.333 0.00 0.00 0.00 4.02
1354 1409 7.554835 TGTGAGAATAATTAATAAAGTGGCCGT 59.445 33.333 0.00 0.00 0.00 5.68
1355 1410 7.925993 TGTGAGAATAATTAATAAAGTGGCCG 58.074 34.615 0.00 0.00 0.00 6.13
1356 1411 9.736023 CTTGTGAGAATAATTAATAAAGTGGCC 57.264 33.333 0.00 0.00 0.00 5.36
1368 1423 8.515414 GCTTTGTAAGGTCTTGTGAGAATAATT 58.485 33.333 0.00 0.00 32.66 1.40
1369 1424 7.121315 GGCTTTGTAAGGTCTTGTGAGAATAAT 59.879 37.037 0.00 0.00 32.66 1.28
1370 1425 6.430000 GGCTTTGTAAGGTCTTGTGAGAATAA 59.570 38.462 0.00 0.00 32.66 1.40
1371 1426 5.938125 GGCTTTGTAAGGTCTTGTGAGAATA 59.062 40.000 0.00 0.00 32.66 1.75
1372 1427 4.762251 GGCTTTGTAAGGTCTTGTGAGAAT 59.238 41.667 0.00 0.00 32.66 2.40
1373 1428 4.134563 GGCTTTGTAAGGTCTTGTGAGAA 58.865 43.478 0.00 0.00 32.66 2.87
1374 1429 3.135712 TGGCTTTGTAAGGTCTTGTGAGA 59.864 43.478 0.00 0.00 0.00 3.27
1375 1430 3.476552 TGGCTTTGTAAGGTCTTGTGAG 58.523 45.455 0.00 0.00 0.00 3.51
1376 1431 3.569194 TGGCTTTGTAAGGTCTTGTGA 57.431 42.857 0.00 0.00 0.00 3.58
1377 1432 4.759693 TGTATGGCTTTGTAAGGTCTTGTG 59.240 41.667 0.00 0.00 0.00 3.33
1378 1433 4.980573 TGTATGGCTTTGTAAGGTCTTGT 58.019 39.130 0.00 0.00 0.00 3.16
1379 1434 5.240623 TGTTGTATGGCTTTGTAAGGTCTTG 59.759 40.000 0.00 0.00 0.00 3.02
1380 1435 5.381757 TGTTGTATGGCTTTGTAAGGTCTT 58.618 37.500 0.00 0.00 0.00 3.01
1381 1436 4.980573 TGTTGTATGGCTTTGTAAGGTCT 58.019 39.130 0.00 0.00 0.00 3.85
1382 1437 4.379499 GCTGTTGTATGGCTTTGTAAGGTC 60.379 45.833 0.00 0.00 0.00 3.85
1383 1438 3.506067 GCTGTTGTATGGCTTTGTAAGGT 59.494 43.478 0.00 0.00 0.00 3.50
1384 1439 3.505680 TGCTGTTGTATGGCTTTGTAAGG 59.494 43.478 0.00 0.00 0.00 2.69
1385 1440 4.764679 TGCTGTTGTATGGCTTTGTAAG 57.235 40.909 0.00 0.00 0.00 2.34
1386 1441 4.824537 TCTTGCTGTTGTATGGCTTTGTAA 59.175 37.500 0.00 0.00 0.00 2.41
1387 1442 4.215399 GTCTTGCTGTTGTATGGCTTTGTA 59.785 41.667 0.00 0.00 0.00 2.41
1388 1443 3.004734 GTCTTGCTGTTGTATGGCTTTGT 59.995 43.478 0.00 0.00 0.00 2.83
1389 1444 3.254166 AGTCTTGCTGTTGTATGGCTTTG 59.746 43.478 0.00 0.00 0.00 2.77
1390 1445 3.490348 AGTCTTGCTGTTGTATGGCTTT 58.510 40.909 0.00 0.00 0.00 3.51
1391 1446 3.146104 AGTCTTGCTGTTGTATGGCTT 57.854 42.857 0.00 0.00 0.00 4.35
1392 1447 2.867109 AGTCTTGCTGTTGTATGGCT 57.133 45.000 0.00 0.00 0.00 4.75
1393 1448 4.672801 GCTTTAGTCTTGCTGTTGTATGGC 60.673 45.833 0.00 0.00 0.00 4.40
1394 1449 4.142600 GGCTTTAGTCTTGCTGTTGTATGG 60.143 45.833 0.00 0.00 0.00 2.74
1395 1450 4.455533 TGGCTTTAGTCTTGCTGTTGTATG 59.544 41.667 0.00 0.00 0.00 2.39
1396 1451 4.455877 GTGGCTTTAGTCTTGCTGTTGTAT 59.544 41.667 0.00 0.00 0.00 2.29
1397 1452 3.813166 GTGGCTTTAGTCTTGCTGTTGTA 59.187 43.478 0.00 0.00 0.00 2.41
1398 1453 2.618709 GTGGCTTTAGTCTTGCTGTTGT 59.381 45.455 0.00 0.00 0.00 3.32
1399 1454 2.030805 GGTGGCTTTAGTCTTGCTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
1400 1455 2.230660 GGTGGCTTTAGTCTTGCTGTT 58.769 47.619 0.00 0.00 0.00 3.16
1401 1456 1.878102 CGGTGGCTTTAGTCTTGCTGT 60.878 52.381 0.00 0.00 0.00 4.40
1402 1457 0.798776 CGGTGGCTTTAGTCTTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
1403 1458 0.396811 ACGGTGGCTTTAGTCTTGCT 59.603 50.000 0.00 0.00 0.00 3.91
1404 1459 0.796927 GACGGTGGCTTTAGTCTTGC 59.203 55.000 0.00 0.00 0.00 4.01
1405 1460 2.457366 AGACGGTGGCTTTAGTCTTG 57.543 50.000 0.00 0.00 40.64 3.02
1406 1461 3.616802 GCTTAGACGGTGGCTTTAGTCTT 60.617 47.826 9.79 0.00 42.99 3.01
1407 1462 2.094130 GCTTAGACGGTGGCTTTAGTCT 60.094 50.000 9.53 9.53 44.90 3.24
1408 1463 2.269172 GCTTAGACGGTGGCTTTAGTC 58.731 52.381 0.00 0.00 0.00 2.59
1409 1464 1.621814 TGCTTAGACGGTGGCTTTAGT 59.378 47.619 0.00 0.00 0.00 2.24
1410 1465 2.380084 TGCTTAGACGGTGGCTTTAG 57.620 50.000 0.00 0.00 0.00 1.85
1411 1466 2.224329 TGTTGCTTAGACGGTGGCTTTA 60.224 45.455 0.00 0.00 0.00 1.85
1412 1467 1.235724 GTTGCTTAGACGGTGGCTTT 58.764 50.000 0.00 0.00 0.00 3.51
1413 1468 0.107831 TGTTGCTTAGACGGTGGCTT 59.892 50.000 0.00 0.00 0.00 4.35
1414 1469 0.107831 TTGTTGCTTAGACGGTGGCT 59.892 50.000 0.00 0.00 0.00 4.75
1415 1470 0.237498 GTTGTTGCTTAGACGGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
1416 1471 1.531149 CAGTTGTTGCTTAGACGGTGG 59.469 52.381 0.00 0.00 0.00 4.61
1417 1472 2.210116 ACAGTTGTTGCTTAGACGGTG 58.790 47.619 0.00 0.00 0.00 4.94
1418 1473 2.480845 GACAGTTGTTGCTTAGACGGT 58.519 47.619 0.00 0.00 0.00 4.83
1419 1474 1.455786 CGACAGTTGTTGCTTAGACGG 59.544 52.381 0.00 0.00 0.00 4.79
1420 1475 2.837337 CGACAGTTGTTGCTTAGACG 57.163 50.000 0.00 0.00 0.00 4.18
1428 1483 3.612860 GGATAGTGTAGCGACAGTTGTTG 59.387 47.826 12.75 0.00 39.95 3.33
1429 1484 3.257375 TGGATAGTGTAGCGACAGTTGTT 59.743 43.478 12.75 0.00 39.95 2.83
1430 1485 2.823747 TGGATAGTGTAGCGACAGTTGT 59.176 45.455 12.75 2.63 39.95 3.32
1431 1486 3.503827 TGGATAGTGTAGCGACAGTTG 57.496 47.619 12.75 0.00 39.95 3.16
1432 1487 4.737855 ATTGGATAGTGTAGCGACAGTT 57.262 40.909 12.75 1.07 39.95 3.16
1433 1488 4.159693 TCAATTGGATAGTGTAGCGACAGT 59.840 41.667 12.16 12.16 42.16 3.55
1434 1489 4.682787 TCAATTGGATAGTGTAGCGACAG 58.317 43.478 5.42 0.00 35.82 3.51
1435 1490 4.729227 TCAATTGGATAGTGTAGCGACA 57.271 40.909 5.42 0.00 0.00 4.35
1436 1491 5.289595 TCATCAATTGGATAGTGTAGCGAC 58.710 41.667 5.42 0.00 33.95 5.19
1437 1492 5.529581 TCATCAATTGGATAGTGTAGCGA 57.470 39.130 5.42 0.00 33.95 4.93
1438 1493 5.178252 CCTTCATCAATTGGATAGTGTAGCG 59.822 44.000 5.42 0.00 33.95 4.26
1439 1494 5.471456 CCCTTCATCAATTGGATAGTGTAGC 59.529 44.000 5.42 0.00 33.95 3.58
1440 1495 6.000219 CCCCTTCATCAATTGGATAGTGTAG 59.000 44.000 5.42 1.61 33.95 2.74
1441 1496 5.690097 GCCCCTTCATCAATTGGATAGTGTA 60.690 44.000 5.42 0.00 33.95 2.90
1442 1497 4.796606 CCCCTTCATCAATTGGATAGTGT 58.203 43.478 5.42 0.00 33.95 3.55
1443 1498 3.571401 GCCCCTTCATCAATTGGATAGTG 59.429 47.826 5.42 0.00 33.95 2.74
1444 1499 3.748668 CGCCCCTTCATCAATTGGATAGT 60.749 47.826 5.42 0.00 33.95 2.12
1445 1500 2.816087 CGCCCCTTCATCAATTGGATAG 59.184 50.000 5.42 0.00 33.95 2.08
1446 1501 2.862541 CGCCCCTTCATCAATTGGATA 58.137 47.619 5.42 0.00 33.95 2.59
1447 1502 1.696063 CGCCCCTTCATCAATTGGAT 58.304 50.000 5.42 0.00 36.39 3.41
1448 1503 1.037030 GCGCCCCTTCATCAATTGGA 61.037 55.000 5.42 0.00 0.00 3.53
1449 1504 1.321805 TGCGCCCCTTCATCAATTGG 61.322 55.000 4.18 0.00 0.00 3.16
1450 1505 0.101759 CTGCGCCCCTTCATCAATTG 59.898 55.000 4.18 0.00 0.00 2.32
1451 1506 0.034186 TCTGCGCCCCTTCATCAATT 60.034 50.000 4.18 0.00 0.00 2.32
1452 1507 0.184451 ATCTGCGCCCCTTCATCAAT 59.816 50.000 4.18 0.00 0.00 2.57
1453 1508 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
1454 1509 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
1455 1510 0.394565 ACTATCTGCGCCCCTTCATC 59.605 55.000 4.18 0.00 0.00 2.92
1456 1511 0.394565 GACTATCTGCGCCCCTTCAT 59.605 55.000 4.18 0.00 0.00 2.57
1457 1512 0.687757 AGACTATCTGCGCCCCTTCA 60.688 55.000 4.18 0.00 0.00 3.02
1458 1513 0.249657 CAGACTATCTGCGCCCCTTC 60.250 60.000 4.18 0.00 37.72 3.46
1459 1514 1.690219 CCAGACTATCTGCGCCCCTT 61.690 60.000 4.18 0.00 42.98 3.95
1460 1515 2.136878 CCAGACTATCTGCGCCCCT 61.137 63.158 4.18 0.00 42.98 4.79
1461 1516 2.423446 CCAGACTATCTGCGCCCC 59.577 66.667 4.18 0.00 42.98 5.80
1462 1517 2.280457 GCCAGACTATCTGCGCCC 60.280 66.667 4.18 0.00 42.98 6.13
1463 1518 2.280457 GGCCAGACTATCTGCGCC 60.280 66.667 17.13 17.13 46.03 6.53
1464 1519 0.389391 TTAGGCCAGACTATCTGCGC 59.611 55.000 5.01 0.00 42.98 6.09
1465 1520 3.367498 GGTATTAGGCCAGACTATCTGCG 60.367 52.174 5.01 0.00 42.98 5.18
1466 1521 3.578716 TGGTATTAGGCCAGACTATCTGC 59.421 47.826 5.01 0.00 42.98 4.26
1467 1522 5.808366 TTGGTATTAGGCCAGACTATCTG 57.192 43.478 5.01 0.00 43.91 2.90
1468 1523 5.665812 TGTTTGGTATTAGGCCAGACTATCT 59.334 40.000 5.01 0.00 40.50 1.98
1469 1524 5.925509 TGTTTGGTATTAGGCCAGACTATC 58.074 41.667 5.01 0.00 40.50 2.08
1470 1525 5.665812 TCTGTTTGGTATTAGGCCAGACTAT 59.334 40.000 5.01 0.00 40.50 2.12
1471 1526 5.027460 TCTGTTTGGTATTAGGCCAGACTA 58.973 41.667 5.01 0.00 40.50 2.59
1472 1527 3.844211 TCTGTTTGGTATTAGGCCAGACT 59.156 43.478 5.01 0.00 40.50 3.24
1473 1528 3.939592 GTCTGTTTGGTATTAGGCCAGAC 59.060 47.826 5.01 0.00 40.34 3.51
1474 1529 3.585289 TGTCTGTTTGGTATTAGGCCAGA 59.415 43.478 5.01 0.00 37.31 3.86
1475 1530 3.950397 TGTCTGTTTGGTATTAGGCCAG 58.050 45.455 5.01 0.00 37.31 4.85
1476 1531 4.018870 TGATGTCTGTTTGGTATTAGGCCA 60.019 41.667 5.01 0.00 0.00 5.36
1477 1532 4.335594 GTGATGTCTGTTTGGTATTAGGCC 59.664 45.833 0.00 0.00 0.00 5.19
1478 1533 4.941263 TGTGATGTCTGTTTGGTATTAGGC 59.059 41.667 0.00 0.00 0.00 3.93
1479 1534 5.065218 GCTGTGATGTCTGTTTGGTATTAGG 59.935 44.000 0.00 0.00 0.00 2.69
1480 1535 5.065218 GGCTGTGATGTCTGTTTGGTATTAG 59.935 44.000 0.00 0.00 0.00 1.73
1481 1536 4.941263 GGCTGTGATGTCTGTTTGGTATTA 59.059 41.667 0.00 0.00 0.00 0.98
1482 1537 3.758554 GGCTGTGATGTCTGTTTGGTATT 59.241 43.478 0.00 0.00 0.00 1.89
1483 1538 3.244875 TGGCTGTGATGTCTGTTTGGTAT 60.245 43.478 0.00 0.00 0.00 2.73
1484 1539 2.105649 TGGCTGTGATGTCTGTTTGGTA 59.894 45.455 0.00 0.00 0.00 3.25
1485 1540 1.133823 TGGCTGTGATGTCTGTTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
1486 1541 1.608055 TGGCTGTGATGTCTGTTTGG 58.392 50.000 0.00 0.00 0.00 3.28
1487 1542 3.374745 GTTTGGCTGTGATGTCTGTTTG 58.625 45.455 0.00 0.00 0.00 2.93
1488 1543 2.362077 GGTTTGGCTGTGATGTCTGTTT 59.638 45.455 0.00 0.00 0.00 2.83
1489 1544 1.956477 GGTTTGGCTGTGATGTCTGTT 59.044 47.619 0.00 0.00 0.00 3.16
1490 1545 1.143684 AGGTTTGGCTGTGATGTCTGT 59.856 47.619 0.00 0.00 0.00 3.41
1491 1546 1.901591 AGGTTTGGCTGTGATGTCTG 58.098 50.000 0.00 0.00 0.00 3.51
1492 1547 3.788227 TTAGGTTTGGCTGTGATGTCT 57.212 42.857 0.00 0.00 0.00 3.41
1493 1548 3.568007 TGTTTAGGTTTGGCTGTGATGTC 59.432 43.478 0.00 0.00 0.00 3.06
1494 1549 3.561143 TGTTTAGGTTTGGCTGTGATGT 58.439 40.909 0.00 0.00 0.00 3.06
1495 1550 4.460382 AGATGTTTAGGTTTGGCTGTGATG 59.540 41.667 0.00 0.00 0.00 3.07
1496 1551 4.666512 AGATGTTTAGGTTTGGCTGTGAT 58.333 39.130 0.00 0.00 0.00 3.06
1497 1552 4.098914 AGATGTTTAGGTTTGGCTGTGA 57.901 40.909 0.00 0.00 0.00 3.58
1498 1553 5.705441 TCTTAGATGTTTAGGTTTGGCTGTG 59.295 40.000 0.00 0.00 0.00 3.66
1499 1554 5.705905 GTCTTAGATGTTTAGGTTTGGCTGT 59.294 40.000 0.00 0.00 0.00 4.40
1500 1555 5.123979 GGTCTTAGATGTTTAGGTTTGGCTG 59.876 44.000 0.00 0.00 0.00 4.85
1501 1556 5.014228 AGGTCTTAGATGTTTAGGTTTGGCT 59.986 40.000 0.00 0.00 0.00 4.75
1502 1557 5.123979 CAGGTCTTAGATGTTTAGGTTTGGC 59.876 44.000 0.00 0.00 0.00 4.52
1503 1558 6.472887 TCAGGTCTTAGATGTTTAGGTTTGG 58.527 40.000 0.00 0.00 0.00 3.28
1504 1559 6.595716 CCTCAGGTCTTAGATGTTTAGGTTTG 59.404 42.308 0.00 0.00 0.00 2.93
1505 1560 6.272558 ACCTCAGGTCTTAGATGTTTAGGTTT 59.727 38.462 0.00 0.00 29.47 3.27
1506 1561 5.785940 ACCTCAGGTCTTAGATGTTTAGGTT 59.214 40.000 0.00 0.00 29.47 3.50
1507 1562 5.342866 ACCTCAGGTCTTAGATGTTTAGGT 58.657 41.667 0.00 0.00 0.00 3.08
1508 1563 5.941555 ACCTCAGGTCTTAGATGTTTAGG 57.058 43.478 0.00 0.00 0.00 2.69
1522 1577 2.945080 CATATGCATGGACCTCAGGT 57.055 50.000 10.16 0.00 39.44 4.00
1532 1587 6.638096 TTAATCACCAGAACCATATGCATG 57.362 37.500 10.16 0.00 0.00 4.06
1545 1600 8.442632 TTCTAGCATCAATCTTTAATCACCAG 57.557 34.615 0.00 0.00 0.00 4.00
1595 1650 8.732858 GCTAAAGAAAGCAATGCAAATGGTGC 62.733 42.308 8.35 5.21 46.84 5.01
1596 1651 5.390145 GCTAAAGAAAGCAATGCAAATGGTG 60.390 40.000 8.35 0.00 42.30 4.17
1603 1658 2.158559 TCGGCTAAAGAAAGCAATGCA 58.841 42.857 8.35 0.00 44.64 3.96
1614 1669 5.121768 CCCCATTAACGATATTCGGCTAAAG 59.878 44.000 1.69 0.00 45.59 1.85
1717 1773 5.869649 TGCATAGTTAGAATGGAGTGCTA 57.130 39.130 0.00 0.00 32.87 3.49
1720 1776 6.292542 CGTGATTGCATAGTTAGAATGGAGTG 60.293 42.308 0.00 0.00 0.00 3.51
1723 1779 4.511454 GCGTGATTGCATAGTTAGAATGGA 59.489 41.667 0.00 0.00 34.15 3.41
1724 1780 4.512944 AGCGTGATTGCATAGTTAGAATGG 59.487 41.667 0.00 0.00 37.31 3.16
1725 1781 5.663795 AGCGTGATTGCATAGTTAGAATG 57.336 39.130 0.00 0.00 37.31 2.67
1726 1782 6.683974 AAAGCGTGATTGCATAGTTAGAAT 57.316 33.333 0.00 0.00 37.31 2.40
1727 1783 7.279981 ACATAAAGCGTGATTGCATAGTTAGAA 59.720 33.333 0.00 0.00 37.31 2.10
1728 1784 6.761242 ACATAAAGCGTGATTGCATAGTTAGA 59.239 34.615 0.00 0.00 37.31 2.10
1729 1785 6.948353 ACATAAAGCGTGATTGCATAGTTAG 58.052 36.000 0.00 0.00 37.31 2.34
1730 1786 6.918892 ACATAAAGCGTGATTGCATAGTTA 57.081 33.333 0.00 0.00 37.31 2.24
1731 1787 5.818136 ACATAAAGCGTGATTGCATAGTT 57.182 34.783 0.00 0.00 37.31 2.24
1732 1788 5.818136 AACATAAAGCGTGATTGCATAGT 57.182 34.783 0.00 0.00 37.31 2.12
1733 1789 5.456497 CCAAACATAAAGCGTGATTGCATAG 59.544 40.000 0.00 0.00 37.31 2.23
1734 1790 5.124617 TCCAAACATAAAGCGTGATTGCATA 59.875 36.000 0.00 0.00 37.31 3.14
1735 1791 4.082300 TCCAAACATAAAGCGTGATTGCAT 60.082 37.500 0.00 0.00 37.31 3.96
1736 1792 3.254411 TCCAAACATAAAGCGTGATTGCA 59.746 39.130 0.00 0.00 37.31 4.08
1737 1793 3.832276 TCCAAACATAAAGCGTGATTGC 58.168 40.909 0.00 0.00 30.69 3.56
1738 1794 5.046910 ACTCCAAACATAAAGCGTGATTG 57.953 39.130 0.00 0.00 0.00 2.67
1739 1795 5.703592 TGTACTCCAAACATAAAGCGTGATT 59.296 36.000 0.00 0.00 0.00 2.57
1740 1796 5.242434 TGTACTCCAAACATAAAGCGTGAT 58.758 37.500 0.00 0.00 0.00 3.06
1741 1797 4.633175 TGTACTCCAAACATAAAGCGTGA 58.367 39.130 0.00 0.00 0.00 4.35
1742 1798 5.351233 TTGTACTCCAAACATAAAGCGTG 57.649 39.130 0.00 0.00 0.00 5.34
1743 1799 4.083484 GCTTGTACTCCAAACATAAAGCGT 60.083 41.667 0.00 0.00 31.20 5.07
1744 1800 4.154195 AGCTTGTACTCCAAACATAAAGCG 59.846 41.667 0.00 0.00 34.77 4.68
1745 1801 5.629079 AGCTTGTACTCCAAACATAAAGC 57.371 39.130 0.00 0.00 31.40 3.51
1750 1806 9.113838 CATCTATTTAGCTTGTACTCCAAACAT 57.886 33.333 0.00 0.00 31.20 2.71
1751 1807 8.100791 ACATCTATTTAGCTTGTACTCCAAACA 58.899 33.333 0.00 0.00 31.20 2.83
1752 1808 8.494016 ACATCTATTTAGCTTGTACTCCAAAC 57.506 34.615 0.00 0.00 31.20 2.93
1753 1809 9.162764 GAACATCTATTTAGCTTGTACTCCAAA 57.837 33.333 0.00 0.00 31.20 3.28
1754 1810 8.318412 TGAACATCTATTTAGCTTGTACTCCAA 58.682 33.333 0.00 0.00 0.00 3.53
1755 1811 7.847096 TGAACATCTATTTAGCTTGTACTCCA 58.153 34.615 0.00 0.00 0.00 3.86
1756 1812 8.718102 TTGAACATCTATTTAGCTTGTACTCC 57.282 34.615 0.00 0.00 0.00 3.85
1758 1814 9.726438 ACTTTGAACATCTATTTAGCTTGTACT 57.274 29.630 0.00 0.00 0.00 2.73
1770 1826 9.436957 CCTACTGTGTAAACTTTGAACATCTAT 57.563 33.333 0.00 0.00 0.00 1.98
1817 1876 0.387929 TTAGAATGGGGTAGAGCGCG 59.612 55.000 0.00 0.00 0.00 6.86
1852 1928 2.095263 CGCTTAAAGCTTGCTTTAGGCA 60.095 45.455 36.93 21.36 45.86 4.75
1947 2023 6.555812 AAAGTAACGGGAGAAAAGCTAAAG 57.444 37.500 0.00 0.00 0.00 1.85
1959 2035 5.473066 ACTACTTAGCAAAAGTAACGGGA 57.527 39.130 11.45 0.00 32.89 5.14
2058 2195 8.462016 AGTCGAGCTTGCTGATTTTATTTTATT 58.538 29.630 0.00 0.00 0.00 1.40
2060 2197 7.119116 TGAGTCGAGCTTGCTGATTTTATTTTA 59.881 33.333 0.00 0.00 0.00 1.52
2061 2198 6.072508 TGAGTCGAGCTTGCTGATTTTATTTT 60.073 34.615 0.00 0.00 0.00 1.82
2065 2206 3.925379 TGAGTCGAGCTTGCTGATTTTA 58.075 40.909 0.00 0.00 0.00 1.52
2092 2233 9.403110 CCACATTAGCTTGCTCATTTATTTATC 57.597 33.333 0.00 0.00 0.00 1.75
2118 2259 5.569059 CCGTATGTCTGCAGAAAATTGAAAC 59.431 40.000 20.19 9.17 0.00 2.78
2150 2303 0.026803 CTGCTACATTTTCGCTCCGC 59.973 55.000 0.00 0.00 0.00 5.54
2174 2328 2.711542 CTAAGATCACAAAACGCCCCT 58.288 47.619 0.00 0.00 0.00 4.79
2242 2407 7.461918 GTTACCAAAATTAATCTCCTCGTGTC 58.538 38.462 0.00 0.00 0.00 3.67
2252 2417 7.651704 CCATGATTCCCGTTACCAAAATTAATC 59.348 37.037 0.00 0.00 0.00 1.75
2291 2456 1.553704 GATCTGACCACCCGTTAACCT 59.446 52.381 0.00 0.00 0.00 3.50
2859 3032 0.551131 GGGATCCCCATGGCTATCCT 60.551 60.000 28.97 5.63 44.65 3.24
2860 3033 2.002625 GGGATCCCCATGGCTATCC 58.997 63.158 25.25 25.25 44.65 2.59
2914 3087 2.197324 CTCCCTCCTCCTCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
2924 3097 4.179599 CCCCTCCCTCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
3126 3309 1.271379 CGCTGGAGAAGGGGAGAAAAA 60.271 52.381 0.00 0.00 35.22 1.94
3127 3310 0.324943 CGCTGGAGAAGGGGAGAAAA 59.675 55.000 0.00 0.00 35.22 2.29
3139 3322 3.948086 GACACGACGTCCGCTGGAG 62.948 68.421 10.58 0.00 43.32 3.86
3269 3452 5.323900 CGTGGTTGCTACATCAACAAATAG 58.676 41.667 8.60 0.00 45.98 1.73
3285 3468 1.052287 GAAAAGCAATCGCGTGGTTG 58.948 50.000 17.57 17.57 45.49 3.77
3288 3471 1.451651 GTTTGAAAAGCAATCGCGTGG 59.548 47.619 5.77 0.00 45.49 4.94
3411 3629 3.159472 ACATGCCAATTCAAGAGAGCAA 58.841 40.909 0.00 0.00 33.35 3.91
3505 3726 8.458052 CCTGCAATACAAAATACATTACTGTCA 58.542 33.333 0.00 0.00 36.79 3.58
3516 3737 5.125417 GGCACTCTTCCTGCAATACAAAATA 59.875 40.000 0.00 0.00 36.27 1.40
3588 3809 2.094286 CGGATCATACCTGATGCTCTCC 60.094 54.545 5.72 0.00 45.28 3.71
3593 3814 1.344438 TCCACGGATCATACCTGATGC 59.656 52.381 0.00 0.00 42.27 3.91
3764 3998 7.010738 CCATTTTGTTAGGTACCACACTATACG 59.989 40.741 15.94 0.00 0.00 3.06
3791 4025 3.069079 AGCAAACATGAGAGAGCACAT 57.931 42.857 0.00 0.00 0.00 3.21
3796 4030 7.279536 TGCTCTATTAAAGCAAACATGAGAGAG 59.720 37.037 0.00 0.00 46.29 3.20
3797 4031 7.105588 TGCTCTATTAAAGCAAACATGAGAGA 58.894 34.615 0.00 0.00 46.29 3.10
3820 4054 4.999950 CCTGGGAACATCATATTACTCTGC 59.000 45.833 0.00 0.00 41.51 4.26
3940 4264 5.109210 TGTACATTCAGGTTTGCTAGATCG 58.891 41.667 0.00 0.00 0.00 3.69
3959 4283 9.370126 GTTATCAAATGTAGCATCGAAATGTAC 57.630 33.333 0.00 0.00 35.18 2.90
4030 4362 1.203994 CCAGGAAAAGAAGCATGCCAG 59.796 52.381 15.66 0.00 0.00 4.85
4293 4629 5.646360 TCTGCACCAGTATTTAAGTAAAGGC 59.354 40.000 0.00 0.00 32.61 4.35
4307 4643 0.251354 AGCGATGAATCTGCACCAGT 59.749 50.000 8.90 0.00 32.61 4.00
4313 4649 2.285486 CGAGAAACAGCGATGAATCTGC 60.285 50.000 8.12 4.21 33.80 4.26
4709 5053 8.634475 AATCAAGAAGCACAGAAAAGTTTAAC 57.366 30.769 0.00 0.00 0.00 2.01
4757 5101 0.105913 TTTGCCCGAGGGAAAGGTTT 60.106 50.000 13.28 0.00 38.07 3.27
4969 5314 8.728337 ACTACTGTACTGTACGATTATTCTGA 57.272 34.615 12.87 0.00 0.00 3.27
4979 5324 5.228635 CCGCATAAAACTACTGTACTGTACG 59.771 44.000 12.87 10.05 0.00 3.67
5016 5361 7.849804 ATCACAGTCATGAATTACCTACAAC 57.150 36.000 0.00 0.00 30.82 3.32
5029 5374 6.605849 CACTGAACCTTTAATCACAGTCATG 58.394 40.000 0.00 0.00 36.64 3.07
5035 5380 4.887071 ACAAGCACTGAACCTTTAATCACA 59.113 37.500 0.00 0.00 0.00 3.58
5036 5381 5.438761 ACAAGCACTGAACCTTTAATCAC 57.561 39.130 0.00 0.00 0.00 3.06
5107 5452 4.997395 GCATGGAGAACAGTCAAAGTTAGA 59.003 41.667 0.00 0.00 0.00 2.10
5277 5623 6.209391 GGGTACACTTACAGTTACACTAGGAA 59.791 42.308 0.00 0.00 0.00 3.36
5283 5629 4.879197 AGGGGTACACTTACAGTTACAC 57.121 45.455 0.00 0.00 0.00 2.90
5314 5660 8.296713 GCAGAAAAGAACAATGGTTAGATGTTA 58.703 33.333 0.00 0.00 37.41 2.41
5315 5661 7.147976 GCAGAAAAGAACAATGGTTAGATGTT 58.852 34.615 0.00 0.00 39.82 2.71
5316 5662 6.265196 TGCAGAAAAGAACAATGGTTAGATGT 59.735 34.615 0.00 0.00 37.36 3.06
5548 5894 1.141449 CTCTCTCTCAAGCTGGCGG 59.859 63.158 0.00 0.00 0.00 6.13
5737 6083 4.082679 GGATATCAGAGTACCTAAGCACGG 60.083 50.000 4.83 0.00 0.00 4.94
5951 6300 7.557358 ACAAGAGTGCACCAATATCATTTATGA 59.443 33.333 14.63 0.00 41.70 2.15
6092 6445 1.764134 ACGTCAAGTTTGGTCTACCCA 59.236 47.619 0.00 0.00 43.27 4.51
6227 6581 1.569479 GCTTCACGCTTCCACTGGAC 61.569 60.000 0.00 0.00 35.14 4.02
6273 6627 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
6275 6629 6.648192 AGAAAAGAGAGAGAGAGAGAGAGAG 58.352 44.000 0.00 0.00 0.00 3.20
6277 6631 7.693969 AAAGAAAAGAGAGAGAGAGAGAGAG 57.306 40.000 0.00 0.00 0.00 3.20
6279 6633 7.039784 TCCAAAAGAAAAGAGAGAGAGAGAGAG 60.040 40.741 0.00 0.00 0.00 3.20
6280 6634 6.780031 TCCAAAAGAAAAGAGAGAGAGAGAGA 59.220 38.462 0.00 0.00 0.00 3.10
6281 6635 6.991938 TCCAAAAGAAAAGAGAGAGAGAGAG 58.008 40.000 0.00 0.00 0.00 3.20
6282 6636 6.985653 TCCAAAAGAAAAGAGAGAGAGAGA 57.014 37.500 0.00 0.00 0.00 3.10
6283 6637 8.443953 TTTTCCAAAAGAAAAGAGAGAGAGAG 57.556 34.615 0.00 0.00 47.00 3.20
6294 6648 7.510343 AGATCTGGATCCTTTTCCAAAAGAAAA 59.490 33.333 14.23 1.11 45.03 2.29
6295 6649 7.012607 AGATCTGGATCCTTTTCCAAAAGAAA 58.987 34.615 14.23 2.27 45.03 2.52
6296 6650 6.435277 CAGATCTGGATCCTTTTCCAAAAGAA 59.565 38.462 15.38 0.00 45.03 2.52
6297 6651 5.948162 CAGATCTGGATCCTTTTCCAAAAGA 59.052 40.000 15.38 4.15 45.03 2.52
6298 6652 5.713861 ACAGATCTGGATCCTTTTCCAAAAG 59.286 40.000 26.08 4.99 45.03 2.27
6404 6759 5.506649 GGCTCATTCTAGTAGCAGTAGTGAC 60.507 48.000 0.42 0.00 38.01 3.67
6405 6760 4.580995 GGCTCATTCTAGTAGCAGTAGTGA 59.419 45.833 0.42 0.00 38.01 3.41
6406 6761 4.555708 CGGCTCATTCTAGTAGCAGTAGTG 60.556 50.000 9.95 0.00 38.01 2.74
6483 6844 0.391263 GTCCTTAGGGGCACTTCACG 60.391 60.000 0.00 0.00 37.14 4.35
6485 6846 2.467880 CTAGTCCTTAGGGGCACTTCA 58.532 52.381 0.00 0.00 40.27 3.02
6486 6847 1.139256 GCTAGTCCTTAGGGGCACTTC 59.861 57.143 0.00 0.00 40.27 3.01
6487 6848 1.205055 GCTAGTCCTTAGGGGCACTT 58.795 55.000 0.00 0.00 40.27 3.16
6488 6849 1.043673 CGCTAGTCCTTAGGGGCACT 61.044 60.000 0.00 0.00 40.27 4.40
6531 6892 8.784994 TGACGAATGCACTATTTAAAGGTTTAA 58.215 29.630 0.00 0.00 0.00 1.52
6532 6893 8.231837 GTGACGAATGCACTATTTAAAGGTTTA 58.768 33.333 0.00 0.00 33.57 2.01
6533 6894 7.040686 AGTGACGAATGCACTATTTAAAGGTTT 60.041 33.333 0.00 0.00 44.27 3.27
6534 6895 6.430000 AGTGACGAATGCACTATTTAAAGGTT 59.570 34.615 0.00 0.00 44.27 3.50
6535 6896 5.938125 AGTGACGAATGCACTATTTAAAGGT 59.062 36.000 0.00 0.00 44.27 3.50
6536 6897 6.128282 ACAGTGACGAATGCACTATTTAAAGG 60.128 38.462 0.00 0.00 44.28 3.11
6537 6898 6.831769 ACAGTGACGAATGCACTATTTAAAG 58.168 36.000 0.00 0.00 44.28 1.85
6538 6899 6.795098 ACAGTGACGAATGCACTATTTAAA 57.205 33.333 0.00 0.00 44.28 1.52
6539 6900 6.795098 AACAGTGACGAATGCACTATTTAA 57.205 33.333 0.00 0.00 44.28 1.52
6540 6901 7.892778 TTAACAGTGACGAATGCACTATTTA 57.107 32.000 0.00 0.00 44.28 1.40
6541 6902 6.795098 TTAACAGTGACGAATGCACTATTT 57.205 33.333 0.00 0.00 44.28 1.40
6542 6903 6.795098 TTTAACAGTGACGAATGCACTATT 57.205 33.333 0.00 0.00 44.28 1.73
6543 6904 6.818644 AGATTTAACAGTGACGAATGCACTAT 59.181 34.615 0.00 0.00 44.28 2.12
6544 6905 6.163476 AGATTTAACAGTGACGAATGCACTA 58.837 36.000 0.00 0.00 44.28 2.74
6545 6906 4.997395 AGATTTAACAGTGACGAATGCACT 59.003 37.500 0.00 0.00 46.86 4.40
6546 6907 5.283060 AGATTTAACAGTGACGAATGCAC 57.717 39.130 0.00 0.00 36.53 4.57
6547 6908 5.940192 AAGATTTAACAGTGACGAATGCA 57.060 34.783 0.00 0.00 0.00 3.96
6548 6909 8.722342 TTTAAAGATTTAACAGTGACGAATGC 57.278 30.769 0.00 0.00 32.77 3.56
6566 6927 9.155975 GTCTGATGCTTGAGAACTATTTAAAGA 57.844 33.333 0.00 0.00 0.00 2.52
6581 6942 4.084223 GCAAAATTTGGTGTCTGATGCTTG 60.084 41.667 7.89 0.00 0.00 4.01
6599 6960 4.157289 AGGATTACTCGTCGTCTAGCAAAA 59.843 41.667 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.