Multiple sequence alignment - TraesCS2D01G390200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G390200 chr2D 100.000 5919 0 0 1 5919 497927294 497921376 0.000000e+00 10931.0
1 TraesCS2D01G390200 chr2D 84.227 634 94 5 5289 5919 153050239 153050869 3.920000e-171 612.0
2 TraesCS2D01G390200 chr2D 100.000 52 0 0 4877 4928 497922370 497922319 4.880000e-16 97.1
3 TraesCS2D01G390200 chr2D 100.000 52 0 0 4925 4976 497922418 497922367 4.880000e-16 97.1
4 TraesCS2D01G390200 chr2B 89.710 1895 137 26 13 1893 583792831 583790981 0.000000e+00 2366.0
5 TraesCS2D01G390200 chr2B 87.888 1577 117 30 3392 4928 583789506 583787964 0.000000e+00 1786.0
6 TraesCS2D01G390200 chr2B 87.429 1408 111 29 1915 3302 583790996 583789635 0.000000e+00 1559.0
7 TraesCS2D01G390200 chr2B 87.933 1011 100 5 4924 5914 583788016 583787008 0.000000e+00 1171.0
8 TraesCS2D01G390200 chr2B 81.481 756 109 18 5188 5918 20022300 20021551 5.110000e-165 592.0
9 TraesCS2D01G390200 chr2B 79.070 86 15 3 213 296 600776129 600776213 8.290000e-04 56.5
10 TraesCS2D01G390200 chr2A 94.745 1332 47 14 569 1887 642228555 642227234 0.000000e+00 2050.0
11 TraesCS2D01G390200 chr2A 91.213 1468 81 24 1918 3363 642227240 642225799 0.000000e+00 1953.0
12 TraesCS2D01G390200 chr2A 90.837 884 47 9 3383 4260 642225712 642224857 0.000000e+00 1153.0
13 TraesCS2D01G390200 chr2A 95.546 696 18 5 4242 4928 642224848 642224157 0.000000e+00 1101.0
14 TraesCS2D01G390200 chr2A 87.755 686 75 4 5241 5919 642221777 642221094 0.000000e+00 793.0
15 TraesCS2D01G390200 chr2A 80.797 703 120 12 5187 5882 431086119 431085425 2.430000e-148 536.0
16 TraesCS2D01G390200 chr2A 86.257 342 24 5 4928 5250 642224205 642223868 3.390000e-92 350.0
17 TraesCS2D01G390200 chr1D 81.745 745 103 28 5194 5919 256550496 256549766 5.110000e-165 592.0
18 TraesCS2D01G390200 chr1D 78.605 215 38 6 4248 4456 145941770 145941558 1.030000e-27 135.0
19 TraesCS2D01G390200 chr1A 83.468 617 92 9 5307 5919 329525070 329524460 3.100000e-157 566.0
20 TraesCS2D01G390200 chr1A 82.700 237 35 5 5175 5410 40918168 40918399 7.780000e-49 206.0
21 TraesCS2D01G390200 chr1A 79.070 215 36 7 4248 4456 143819297 143819086 8.000000e-29 139.0
22 TraesCS2D01G390200 chr3D 82.426 643 101 10 5146 5782 45961672 45961036 8.670000e-153 551.0
23 TraesCS2D01G390200 chr6B 83.725 553 80 7 5307 5851 256334889 256335439 1.140000e-141 514.0
24 TraesCS2D01G390200 chr6B 91.391 151 12 1 1604 1754 508940101 508940250 7.780000e-49 206.0
25 TraesCS2D01G390200 chr6D 91.391 151 12 1 1604 1754 315959111 315958962 7.780000e-49 206.0
26 TraesCS2D01G390200 chr6A 90.066 151 14 1 1604 1754 453827147 453826998 1.680000e-45 195.0
27 TraesCS2D01G390200 chr6A 94.444 36 2 0 5187 5222 611908547 611908582 8.290000e-04 56.5
28 TraesCS2D01G390200 chr5A 77.578 223 44 5 4248 4464 445133902 445134124 4.810000e-26 130.0
29 TraesCS2D01G390200 chr1B 76.279 215 40 9 4248 4456 194793566 194793357 2.920000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G390200 chr2D 497921376 497927294 5918 True 10931.000000 10931 100.000000 1 5919 1 chr2D.!!$R1 5918
1 TraesCS2D01G390200 chr2D 153050239 153050869 630 False 612.000000 612 84.227000 5289 5919 1 chr2D.!!$F1 630
2 TraesCS2D01G390200 chr2B 583787008 583792831 5823 True 1720.500000 2366 88.240000 13 5914 4 chr2B.!!$R2 5901
3 TraesCS2D01G390200 chr2B 20021551 20022300 749 True 592.000000 592 81.481000 5188 5918 1 chr2B.!!$R1 730
4 TraesCS2D01G390200 chr2A 642221094 642228555 7461 True 1233.333333 2050 91.058833 569 5919 6 chr2A.!!$R2 5350
5 TraesCS2D01G390200 chr2A 431085425 431086119 694 True 536.000000 536 80.797000 5187 5882 1 chr2A.!!$R1 695
6 TraesCS2D01G390200 chr1D 256549766 256550496 730 True 592.000000 592 81.745000 5194 5919 1 chr1D.!!$R2 725
7 TraesCS2D01G390200 chr1A 329524460 329525070 610 True 566.000000 566 83.468000 5307 5919 1 chr1A.!!$R2 612
8 TraesCS2D01G390200 chr3D 45961036 45961672 636 True 551.000000 551 82.426000 5146 5782 1 chr3D.!!$R1 636
9 TraesCS2D01G390200 chr6B 256334889 256335439 550 False 514.000000 514 83.725000 5307 5851 1 chr6B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 415 0.175760 ATCGACACCGTCAAGATGGG 59.824 55.0 12.65 4.65 41.81 4.00 F
1483 1502 0.103026 TGCTCTATGCCTGCTGTACG 59.897 55.0 0.00 0.00 42.00 3.67 F
3132 3186 0.389391 TATAGACCGCTCTTGGCTGC 59.611 55.0 0.00 0.00 39.13 5.25 F
3935 4103 0.615850 AGCCAGAGAGTTGGTTAGGC 59.384 55.0 0.00 0.00 40.49 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 1923 0.108898 GTGCCCATTATGCGCAAACA 60.109 50.0 17.11 0.46 39.02 2.83 R
3158 3212 0.234884 ACGCGAGCTAAAAACTGTGC 59.765 50.0 15.93 0.00 0.00 4.57 R
4909 5138 0.030773 CGCCGATCGATCAGAAGGAA 59.969 55.0 24.40 0.00 41.67 3.36 R
5519 7900 0.253868 TCCTCCTCCTCCTCCTCTGA 60.254 60.0 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.550376 GCACTTATTGAACACATTTTGAATTGT 58.450 29.630 0.00 0.00 0.00 2.71
46 47 1.904287 TTGTAGGACATGCACAACCC 58.096 50.000 0.00 0.00 0.00 4.11
47 48 1.064003 TGTAGGACATGCACAACCCT 58.936 50.000 0.00 0.00 0.00 4.34
51 52 2.795329 AGGACATGCACAACCCTAAAG 58.205 47.619 0.00 0.00 0.00 1.85
62 63 3.282885 CAACCCTAAAGCTCCCTCAATC 58.717 50.000 0.00 0.00 0.00 2.67
68 69 1.673168 AAGCTCCCTCAATCGATTGC 58.327 50.000 29.32 18.32 37.68 3.56
100 101 0.674581 CTGCTGCCTTTCCATCGTCA 60.675 55.000 0.00 0.00 0.00 4.35
101 102 0.674581 TGCTGCCTTTCCATCGTCAG 60.675 55.000 0.00 0.00 0.00 3.51
105 106 1.424493 GCCTTTCCATCGTCAGAGCG 61.424 60.000 0.00 0.00 0.00 5.03
120 121 0.635731 GAGCGAGTCGTTGTTGATCG 59.364 55.000 15.08 0.00 36.51 3.69
127 128 2.029380 AGTCGTTGTTGATCGTGGATGA 60.029 45.455 0.00 0.00 0.00 2.92
128 129 2.930040 GTCGTTGTTGATCGTGGATGAT 59.070 45.455 0.00 0.00 0.00 2.45
130 131 4.207224 GTCGTTGTTGATCGTGGATGATAG 59.793 45.833 0.00 0.00 0.00 2.08
131 132 4.097286 TCGTTGTTGATCGTGGATGATAGA 59.903 41.667 0.00 0.00 0.00 1.98
132 133 4.803613 CGTTGTTGATCGTGGATGATAGAA 59.196 41.667 0.00 0.00 0.00 2.10
133 134 5.290885 CGTTGTTGATCGTGGATGATAGAAA 59.709 40.000 0.00 0.00 0.00 2.52
140 141 5.869649 TCGTGGATGATAGAAATCCTCAA 57.130 39.130 4.23 0.00 43.52 3.02
141 142 5.847304 TCGTGGATGATAGAAATCCTCAAG 58.153 41.667 4.23 0.00 43.52 3.02
146 147 5.516238 GGATGATAGAAATCCTCAAGGCCAT 60.516 44.000 5.01 0.00 40.50 4.40
151 152 1.002069 AATCCTCAAGGCCATGGTCA 58.998 50.000 20.74 0.00 34.44 4.02
155 156 1.492176 CCTCAAGGCCATGGTCATACT 59.508 52.381 20.74 4.22 0.00 2.12
156 157 2.705658 CCTCAAGGCCATGGTCATACTA 59.294 50.000 20.74 0.00 0.00 1.82
173 174 3.028094 ACTAAACCATCGCCCTAGAGA 57.972 47.619 0.00 0.00 0.00 3.10
175 176 2.990066 AAACCATCGCCCTAGAGAAG 57.010 50.000 0.00 0.00 0.00 2.85
179 180 2.168728 ACCATCGCCCTAGAGAAGAAAC 59.831 50.000 0.00 0.00 0.00 2.78
181 182 3.637229 CCATCGCCCTAGAGAAGAAACTA 59.363 47.826 0.00 0.00 0.00 2.24
190 191 7.579723 GCCCTAGAGAAGAAACTATTGAAGTCA 60.580 40.741 0.00 0.00 37.50 3.41
191 192 8.482128 CCCTAGAGAAGAAACTATTGAAGTCAT 58.518 37.037 0.00 0.00 37.50 3.06
192 193 9.528018 CCTAGAGAAGAAACTATTGAAGTCATC 57.472 37.037 0.00 0.00 37.50 2.92
206 207 4.656041 GAAGTCATCTTCGCAGGAAAATG 58.344 43.478 0.00 0.00 40.24 2.32
241 243 2.038659 CCCAACCTCCAAAAAGCTCAA 58.961 47.619 0.00 0.00 0.00 3.02
268 271 3.305177 ATGGCACCGGTGGTCGTAC 62.305 63.158 34.58 17.20 37.11 3.67
288 291 0.389166 CAACGTGACAGAGAGGAGGC 60.389 60.000 0.00 0.00 0.00 4.70
313 316 0.752658 ACCAAACTGCAAAGGGAAGC 59.247 50.000 0.00 0.00 0.00 3.86
315 318 0.752054 CAAACTGCAAAGGGAAGCCA 59.248 50.000 0.00 0.00 0.00 4.75
324 327 1.488705 AAGGGAAGCCATCGTCACCA 61.489 55.000 0.00 0.00 0.00 4.17
330 333 0.324614 AGCCATCGTCACCATCACAA 59.675 50.000 0.00 0.00 0.00 3.33
347 350 6.127730 CCATCACAATAACAAACCCTAACCTC 60.128 42.308 0.00 0.00 0.00 3.85
350 353 2.477845 TAACAAACCCTAACCTCGCC 57.522 50.000 0.00 0.00 0.00 5.54
353 356 1.133730 ACAAACCCTAACCTCGCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
354 357 2.167662 CAAACCCTAACCTCGCCAAAT 58.832 47.619 0.00 0.00 0.00 2.32
375 378 2.705658 TGATAGACCGGCAGGAATTCAT 59.294 45.455 10.86 0.00 41.02 2.57
384 387 1.340248 GCAGGAATTCATGCCATGGAG 59.660 52.381 29.83 4.23 46.71 3.86
386 389 2.621998 CAGGAATTCATGCCATGGAGTC 59.378 50.000 18.40 4.83 32.23 3.36
405 408 1.666553 GCCACAATCGACACCGTCA 60.667 57.895 0.00 0.00 37.05 4.35
411 414 1.660607 CAATCGACACCGTCAAGATGG 59.339 52.381 6.77 6.77 43.15 3.51
412 415 0.175760 ATCGACACCGTCAAGATGGG 59.824 55.000 12.65 4.65 41.81 4.00
419 422 1.604378 CGTCAAGATGGGGAGGCTT 59.396 57.895 0.00 0.00 0.00 4.35
429 432 3.258722 TGGGGAGGCTTGAGAAAAATT 57.741 42.857 0.00 0.00 0.00 1.82
435 438 6.155221 GGGGAGGCTTGAGAAAAATTTATTCT 59.845 38.462 12.49 12.49 39.76 2.40
455 458 2.047655 GGATTGGCACCGTCGTCA 60.048 61.111 0.00 0.00 0.00 4.35
470 473 1.132640 GTCACCATCAACGAAGCGC 59.867 57.895 0.00 0.00 0.00 5.92
492 495 3.735820 CGCCGCCACATAACTCTACTAAA 60.736 47.826 0.00 0.00 0.00 1.85
519 523 5.768662 ACCCCAAAGTAAGAAAAACTAGAGC 59.231 40.000 0.00 0.00 0.00 4.09
532 536 1.775459 ACTAGAGCTCCATCCGGTAGA 59.225 52.381 10.93 0.00 0.00 2.59
544 548 0.672342 CCGGTAGATCGGTAGGTTGG 59.328 60.000 0.00 0.00 44.60 3.77
545 549 1.396653 CGGTAGATCGGTAGGTTGGT 58.603 55.000 0.00 0.00 0.00 3.67
546 550 1.066605 CGGTAGATCGGTAGGTTGGTG 59.933 57.143 0.00 0.00 0.00 4.17
547 551 1.202498 GGTAGATCGGTAGGTTGGTGC 60.202 57.143 0.00 0.00 0.00 5.01
548 552 0.742505 TAGATCGGTAGGTTGGTGCG 59.257 55.000 0.00 0.00 0.00 5.34
549 553 1.217244 GATCGGTAGGTTGGTGCGT 59.783 57.895 0.00 0.00 0.00 5.24
550 554 1.079405 ATCGGTAGGTTGGTGCGTG 60.079 57.895 0.00 0.00 0.00 5.34
551 555 2.515996 ATCGGTAGGTTGGTGCGTGG 62.516 60.000 0.00 0.00 0.00 4.94
593 597 8.198109 TCTAACAATCGGAAATTCCTTCTAGAG 58.802 37.037 10.64 0.16 33.30 2.43
666 681 3.181494 TGCATGACTGACAAAGCATATGC 60.181 43.478 20.36 20.36 38.18 3.14
668 683 4.675933 GCATGACTGACAAAGCATATGCAA 60.676 41.667 28.62 6.74 45.16 4.08
904 919 3.786213 AATCACCTACCCCTCTCTCTT 57.214 47.619 0.00 0.00 0.00 2.85
907 922 2.655407 TCACCTACCCCTCTCTCTTTCT 59.345 50.000 0.00 0.00 0.00 2.52
908 923 3.028130 CACCTACCCCTCTCTCTTTCTC 58.972 54.545 0.00 0.00 0.00 2.87
909 924 2.930405 ACCTACCCCTCTCTCTTTCTCT 59.070 50.000 0.00 0.00 0.00 3.10
910 925 3.053170 ACCTACCCCTCTCTCTTTCTCTC 60.053 52.174 0.00 0.00 0.00 3.20
911 926 3.204382 CCTACCCCTCTCTCTTTCTCTCT 59.796 52.174 0.00 0.00 0.00 3.10
912 927 3.382083 ACCCCTCTCTCTTTCTCTCTC 57.618 52.381 0.00 0.00 0.00 3.20
962 977 1.076485 CATGCCCCCAAGCTAAGCT 60.076 57.895 0.00 0.00 42.56 3.74
964 979 0.396278 ATGCCCCCAAGCTAAGCTTC 60.396 55.000 0.00 0.00 46.77 3.86
986 1005 4.957684 CCGCGCTGATCCATCGCT 62.958 66.667 5.56 0.00 44.99 4.93
1176 1195 4.770362 TCCTCGGACCATGGCGGA 62.770 66.667 13.04 13.13 38.63 5.54
1299 1318 2.670210 CGCTGACGTGCATGCTTGA 61.670 57.895 20.33 0.00 33.53 3.02
1300 1319 1.154338 GCTGACGTGCATGCTTGAC 60.154 57.895 20.33 11.72 0.00 3.18
1330 1349 2.032799 TGTTGTCGCATGGTGTTTCTTC 59.967 45.455 0.00 0.00 0.00 2.87
1468 1487 4.002982 TCATGGTAAGATGTGTGTTGCTC 58.997 43.478 0.00 0.00 0.00 4.26
1483 1502 0.103026 TGCTCTATGCCTGCTGTACG 59.897 55.000 0.00 0.00 42.00 3.67
1549 1568 1.477295 AGGGTTTCACGAGCTAGCTAC 59.523 52.381 19.38 10.97 0.00 3.58
1550 1569 1.546834 GGTTTCACGAGCTAGCTACG 58.453 55.000 19.38 23.11 0.00 3.51
1551 1570 1.135460 GGTTTCACGAGCTAGCTACGT 60.135 52.381 26.13 26.13 40.87 3.57
1552 1571 2.096496 GGTTTCACGAGCTAGCTACGTA 59.904 50.000 29.00 18.59 38.47 3.57
1553 1572 3.097185 GTTTCACGAGCTAGCTACGTAC 58.903 50.000 29.00 22.84 38.47 3.67
1564 1583 1.019673 GCTACGTACGGGACTGATGA 58.980 55.000 21.06 0.00 0.00 2.92
1616 1635 4.348495 AAGGGGGCGGAGAAGGGA 62.348 66.667 0.00 0.00 0.00 4.20
1787 1808 6.592607 TGTGCTTACCCTAATTCGTTTTCTAG 59.407 38.462 0.00 0.00 0.00 2.43
1788 1809 6.036844 GTGCTTACCCTAATTCGTTTTCTAGG 59.963 42.308 0.00 0.00 0.00 3.02
1815 1836 5.798132 ACTACATATGCATGACATACCCAG 58.202 41.667 10.16 10.02 43.99 4.45
1843 1864 3.088500 GAGGATGTGCGCGAACTGC 62.089 63.158 19.98 10.05 41.47 4.40
1865 1886 1.887707 GTGCCTTAGATTCCGCCGG 60.888 63.158 0.00 0.00 0.00 6.13
1866 1887 2.363975 TGCCTTAGATTCCGCCGGT 61.364 57.895 1.63 0.00 0.00 5.28
1880 1901 1.227556 CCGGTCGTCCCCATTCATC 60.228 63.158 0.00 0.00 0.00 2.92
1884 1905 2.189257 CGTCCCCATTCATCGCCA 59.811 61.111 0.00 0.00 0.00 5.69
1885 1906 2.180204 CGTCCCCATTCATCGCCAC 61.180 63.158 0.00 0.00 0.00 5.01
1886 1907 1.224592 GTCCCCATTCATCGCCACT 59.775 57.895 0.00 0.00 0.00 4.00
1887 1908 0.815615 GTCCCCATTCATCGCCACTC 60.816 60.000 0.00 0.00 0.00 3.51
1888 1909 0.982852 TCCCCATTCATCGCCACTCT 60.983 55.000 0.00 0.00 0.00 3.24
1889 1910 0.758734 CCCCATTCATCGCCACTCTA 59.241 55.000 0.00 0.00 0.00 2.43
1890 1911 1.349026 CCCCATTCATCGCCACTCTAT 59.651 52.381 0.00 0.00 0.00 1.98
1891 1912 2.224621 CCCCATTCATCGCCACTCTATT 60.225 50.000 0.00 0.00 0.00 1.73
1892 1913 3.480470 CCCATTCATCGCCACTCTATTT 58.520 45.455 0.00 0.00 0.00 1.40
1893 1914 4.504864 CCCCATTCATCGCCACTCTATTTA 60.505 45.833 0.00 0.00 0.00 1.40
1894 1915 5.248640 CCCATTCATCGCCACTCTATTTAT 58.751 41.667 0.00 0.00 0.00 1.40
1895 1916 5.707298 CCCATTCATCGCCACTCTATTTATT 59.293 40.000 0.00 0.00 0.00 1.40
1896 1917 6.207417 CCCATTCATCGCCACTCTATTTATTT 59.793 38.462 0.00 0.00 0.00 1.40
1897 1918 7.390440 CCCATTCATCGCCACTCTATTTATTTA 59.610 37.037 0.00 0.00 0.00 1.40
1898 1919 8.950210 CCATTCATCGCCACTCTATTTATTTAT 58.050 33.333 0.00 0.00 0.00 1.40
1918 1939 7.706281 TTTATTTATGTTTGCGCATAATGGG 57.294 32.000 12.75 0.00 39.95 4.00
1944 1965 9.070149 GCACTCTAATTTGCAGATTCTAAAAAG 57.930 33.333 5.63 0.00 38.68 2.27
2017 2038 7.871973 TGTCCATTCAAATCCTACATGTTTTTG 59.128 33.333 2.30 9.82 0.00 2.44
2059 2080 8.201554 TGCATCACAGAAAGACATAGAATTAC 57.798 34.615 0.00 0.00 0.00 1.89
2118 2146 7.963981 TCTAGTGCAAACGAATCATTAGAAAG 58.036 34.615 0.00 0.00 29.86 2.62
2121 2149 7.820648 AGTGCAAACGAATCATTAGAAAGATT 58.179 30.769 0.00 0.00 37.19 2.40
2260 2296 4.941873 AGAAGCCAAGTAATTTACCCTTCG 59.058 41.667 2.92 0.00 34.30 3.79
2276 2313 4.995487 ACCCTTCGTAATCAGAAAAGTGAC 59.005 41.667 0.00 0.00 0.00 3.67
2329 2369 9.671279 TGAATCATTTATCTCTAAGTTGCTTGA 57.329 29.630 0.00 0.00 0.00 3.02
2341 2381 2.032426 AGTTGCTTGAAAAACCCGTACG 59.968 45.455 8.69 8.69 0.00 3.67
2409 2449 0.668535 GAACCAACCTGTGCTTGGAC 59.331 55.000 8.55 0.00 40.76 4.02
2415 2455 3.560025 CCAACCTGTGCTTGGACTCTTAT 60.560 47.826 0.00 0.00 40.76 1.73
2454 2494 3.087065 CCATCGGGGGTCAAACCT 58.913 61.111 0.00 0.00 38.64 3.50
2475 2515 4.479619 CTTAGGTTTGATGCTCTTTGTGC 58.520 43.478 0.00 0.00 0.00 4.57
2528 2568 3.181497 CCATGTGGTGAATTCGTCAATCC 60.181 47.826 0.04 0.00 38.23 3.01
2552 2592 4.521130 AGCTTCGTAACTCATGTCTTCA 57.479 40.909 0.00 0.00 0.00 3.02
2600 2640 1.336795 GGTGGTGGTTTACTTGCATGC 60.337 52.381 11.82 11.82 0.00 4.06
2612 2652 1.351430 TTGCATGCGAGCGTCTACAC 61.351 55.000 14.09 0.00 37.31 2.90
2833 2881 1.366679 ATGCATCACTCAACTGAGCG 58.633 50.000 6.63 0.00 45.79 5.03
2847 2895 6.403049 TCAACTGAGCGTCCTTGATTAAATA 58.597 36.000 0.00 0.00 0.00 1.40
2894 2946 6.548251 ACACTTTGATCATATGAATGCCATGA 59.452 34.615 9.99 0.00 36.71 3.07
2903 2955 8.880878 TCATATGAATGCCATGAAAAAGATTG 57.119 30.769 1.98 0.00 36.71 2.67
2967 3020 4.287067 TGCTTTGGGGTTGCCAAAATTATA 59.713 37.500 0.00 0.00 36.84 0.98
3021 3074 6.871844 TGGAATTTTGACATGAACTCAAACA 58.128 32.000 8.93 3.05 37.36 2.83
3025 3078 3.811722 TGACATGAACTCAAACATCGC 57.188 42.857 0.00 0.00 0.00 4.58
3057 3110 8.264347 TGTACTTTGAGATCCTATATTGTTGCA 58.736 33.333 0.00 0.00 0.00 4.08
3132 3186 0.389391 TATAGACCGCTCTTGGCTGC 59.611 55.000 0.00 0.00 39.13 5.25
3134 3188 2.230994 TAGACCGCTCTTGGCTGCTG 62.231 60.000 0.00 0.00 39.13 4.41
3135 3189 4.711949 ACCGCTCTTGGCTGCTGG 62.712 66.667 0.00 0.00 39.13 4.85
3209 3264 6.262944 GTCCACATTCAAATCATGTATGCCTA 59.737 38.462 0.00 0.00 39.64 3.93
3254 3309 1.202842 TGCTCGGCATGGATCATCATT 60.203 47.619 0.00 0.00 31.71 2.57
3298 3353 6.106003 TGGTACAACATCAGTCATGTATGAC 58.894 40.000 15.41 15.41 45.77 3.06
3315 3370 8.961092 CATGTATGACTTTTGCTATTTATGTGC 58.039 33.333 0.00 0.00 0.00 4.57
3316 3371 8.049655 TGTATGACTTTTGCTATTTATGTGCA 57.950 30.769 0.00 0.00 34.69 4.57
3317 3372 8.685427 TGTATGACTTTTGCTATTTATGTGCAT 58.315 29.630 0.00 0.00 36.55 3.96
3318 3373 7.997107 ATGACTTTTGCTATTTATGTGCATG 57.003 32.000 0.00 0.00 36.55 4.06
3319 3374 7.155655 TGACTTTTGCTATTTATGTGCATGA 57.844 32.000 0.00 0.00 36.55 3.07
3320 3375 7.774134 TGACTTTTGCTATTTATGTGCATGAT 58.226 30.769 0.00 0.00 36.55 2.45
3321 3376 7.916977 TGACTTTTGCTATTTATGTGCATGATC 59.083 33.333 0.00 0.00 36.55 2.92
3340 3419 1.139226 CCTTTGTGTGTGTGCGTTGC 61.139 55.000 0.00 0.00 0.00 4.17
3363 3442 3.888323 TGTTGGTTGTGTGCATCATAGTT 59.112 39.130 0.00 0.00 0.00 2.24
3365 3444 5.049060 TGTTGGTTGTGTGCATCATAGTTAC 60.049 40.000 0.00 0.00 0.00 2.50
3366 3445 4.646572 TGGTTGTGTGCATCATAGTTACA 58.353 39.130 0.00 0.00 0.00 2.41
3367 3446 5.252547 TGGTTGTGTGCATCATAGTTACAT 58.747 37.500 0.00 0.00 0.00 2.29
3368 3447 5.353956 TGGTTGTGTGCATCATAGTTACATC 59.646 40.000 0.00 0.00 0.00 3.06
3369 3448 5.353956 GGTTGTGTGCATCATAGTTACATCA 59.646 40.000 0.00 0.00 0.00 3.07
3370 3449 6.250819 GTTGTGTGCATCATAGTTACATCAC 58.749 40.000 0.00 0.00 0.00 3.06
3371 3450 4.875536 TGTGTGCATCATAGTTACATCACC 59.124 41.667 0.00 0.00 0.00 4.02
3372 3451 5.118990 GTGTGCATCATAGTTACATCACCT 58.881 41.667 0.00 0.00 0.00 4.00
3373 3452 5.007039 GTGTGCATCATAGTTACATCACCTG 59.993 44.000 0.00 0.00 0.00 4.00
3375 3454 4.129380 GCATCATAGTTACATCACCTGCA 58.871 43.478 0.00 0.00 0.00 4.41
3377 3456 5.066375 GCATCATAGTTACATCACCTGCAAA 59.934 40.000 0.00 0.00 0.00 3.68
3378 3457 6.404623 GCATCATAGTTACATCACCTGCAAAA 60.405 38.462 0.00 0.00 0.00 2.44
3379 3458 7.537715 CATCATAGTTACATCACCTGCAAAAA 58.462 34.615 0.00 0.00 0.00 1.94
3414 3559 8.657074 AATTGCATGATTTGTAGGATTGAATG 57.343 30.769 0.00 0.00 0.00 2.67
3523 3676 5.527951 TGTTTTTCCTGTGATACATGCAAC 58.472 37.500 0.00 0.00 0.00 4.17
3653 3812 0.949397 CCAATGCACCATCATCTCCG 59.051 55.000 0.00 0.00 0.00 4.63
3657 3816 1.332889 TGCACCATCATCTCCGCTCT 61.333 55.000 0.00 0.00 0.00 4.09
3666 3825 3.096852 TCATCTCCGCTCTTTTCCTACA 58.903 45.455 0.00 0.00 0.00 2.74
3673 3832 5.801380 TCCGCTCTTTTCCTACACTAAATT 58.199 37.500 0.00 0.00 0.00 1.82
3675 3834 6.815142 TCCGCTCTTTTCCTACACTAAATTAC 59.185 38.462 0.00 0.00 0.00 1.89
3740 3899 7.094762 GGATTCGGAAATTCTAGTGTTTTGAGT 60.095 37.037 0.00 0.00 0.00 3.41
3814 3974 5.895216 ACACTACGTTTTCTAAACCTTCG 57.105 39.130 0.00 0.00 0.00 3.79
3828 3988 1.694696 ACCTTCGAGCCAGAGAGTTTT 59.305 47.619 0.00 0.00 0.00 2.43
3893 4060 4.787551 ACCACTGTCATTCCTTACAACAA 58.212 39.130 0.00 0.00 0.00 2.83
3935 4103 0.615850 AGCCAGAGAGTTGGTTAGGC 59.384 55.000 0.00 0.00 40.49 3.93
3991 4165 9.256477 CTTGTGATACACTTTTGTACTTGACTA 57.744 33.333 0.00 0.00 41.12 2.59
4084 4267 5.451659 CCAAATATTCATCGGTGCCAATTCA 60.452 40.000 0.00 0.00 0.00 2.57
4125 4309 1.909459 TTGAAGCGGGCATGCCTCTA 61.909 55.000 34.70 18.74 36.10 2.43
4126 4310 1.889573 GAAGCGGGCATGCCTCTAC 60.890 63.158 34.70 21.05 36.10 2.59
4197 4385 3.056201 TGTATAGAGACCCTTTCCCCC 57.944 52.381 0.00 0.00 0.00 5.40
4205 4393 3.268595 GAGACCCTTTCCCCCATTTCTTA 59.731 47.826 0.00 0.00 0.00 2.10
4278 4493 7.387673 CCTTTGTTCCAAAAACTTGAAGTTCTT 59.612 33.333 11.44 0.17 37.47 2.52
4298 4513 5.047847 TCTTGGTTAGTCTCAAGTCAAACG 58.952 41.667 0.00 0.00 40.67 3.60
4707 4936 5.053145 GGCTTCTCTGAACCTGTATATGTG 58.947 45.833 0.00 0.00 0.00 3.21
4708 4937 5.395768 GGCTTCTCTGAACCTGTATATGTGT 60.396 44.000 0.00 0.00 0.00 3.72
4709 4938 5.521735 GCTTCTCTGAACCTGTATATGTGTG 59.478 44.000 0.00 0.00 0.00 3.82
4710 4939 6.605471 TTCTCTGAACCTGTATATGTGTGT 57.395 37.500 0.00 0.00 0.00 3.72
4910 5139 3.360340 GCAGCTGCGCCTTCACTT 61.360 61.111 25.23 0.00 0.00 3.16
4911 5140 2.866028 CAGCTGCGCCTTCACTTC 59.134 61.111 4.18 0.00 0.00 3.01
4912 5141 2.359230 AGCTGCGCCTTCACTTCC 60.359 61.111 4.18 0.00 0.00 3.46
4913 5142 2.359230 GCTGCGCCTTCACTTCCT 60.359 61.111 4.18 0.00 0.00 3.36
4914 5143 1.968540 GCTGCGCCTTCACTTCCTT 60.969 57.895 4.18 0.00 0.00 3.36
4915 5144 1.916697 GCTGCGCCTTCACTTCCTTC 61.917 60.000 4.18 0.00 0.00 3.46
4916 5145 0.321122 CTGCGCCTTCACTTCCTTCT 60.321 55.000 4.18 0.00 0.00 2.85
4917 5146 0.603707 TGCGCCTTCACTTCCTTCTG 60.604 55.000 4.18 0.00 0.00 3.02
4918 5147 0.320771 GCGCCTTCACTTCCTTCTGA 60.321 55.000 0.00 0.00 0.00 3.27
4919 5148 1.677217 GCGCCTTCACTTCCTTCTGAT 60.677 52.381 0.00 0.00 0.00 2.90
4920 5149 2.275318 CGCCTTCACTTCCTTCTGATC 58.725 52.381 0.00 0.00 0.00 2.92
4921 5150 2.275318 GCCTTCACTTCCTTCTGATCG 58.725 52.381 0.00 0.00 0.00 3.69
4922 5151 2.093973 GCCTTCACTTCCTTCTGATCGA 60.094 50.000 0.00 0.00 0.00 3.59
5007 5236 2.275253 CGAAACGCACACAAAACACTTC 59.725 45.455 0.00 0.00 0.00 3.01
5091 5338 3.033184 ACCATTATTGCAATGTGGAGGG 58.967 45.455 34.14 23.95 32.85 4.30
5096 5343 5.652994 TTATTGCAATGTGGAGGGTAAAC 57.347 39.130 22.27 0.00 0.00 2.01
5151 5398 5.434352 TCGGTATGTATGTCTTAGAGCAC 57.566 43.478 0.00 0.00 0.00 4.40
5173 5420 4.045104 CCTACAGTCGTGATGTGCTAATC 58.955 47.826 1.17 0.00 32.02 1.75
5206 5463 3.640000 GTCCGCGGGCATTGATCG 61.640 66.667 27.96 0.00 0.00 3.69
5232 5489 4.221703 CACGCCTCATATTTCCCTCTCTAT 59.778 45.833 0.00 0.00 0.00 1.98
5238 5495 6.836527 CCTCATATTTCCCTCTCTATATCCGT 59.163 42.308 0.00 0.00 0.00 4.69
5270 7627 7.512746 TCATATAAGGCACCCTATATCCATACC 59.487 40.741 0.00 0.00 31.13 2.73
5302 7659 2.376956 GTGAGCTACTCTACGCAATCG 58.623 52.381 0.00 0.00 42.43 3.34
5505 7886 1.742146 CTGTAGGCATCTGCGGCTA 59.258 57.895 0.00 0.00 42.62 3.93
5519 7900 1.115467 CGGCTAGTGGAGGATCTTGT 58.885 55.000 0.00 0.00 33.73 3.16
5521 7902 2.111384 GGCTAGTGGAGGATCTTGTCA 58.889 52.381 0.00 0.00 33.73 3.58
5523 7904 3.027412 GCTAGTGGAGGATCTTGTCAGA 58.973 50.000 0.00 0.00 33.73 3.27
5535 7917 1.006519 CTTGTCAGAGGAGGAGGAGGA 59.993 57.143 0.00 0.00 0.00 3.71
5548 7930 1.679305 GGAGGAGGAGCTGTCGTCA 60.679 63.158 14.29 0.00 39.03 4.35
5796 8190 4.838486 GAGCCGCTCGTCCTCGTG 62.838 72.222 4.23 0.00 38.33 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.208777 TCAAAATGTGTTCAATAAGTGCATGT 58.791 30.769 0.00 0.00 0.00 3.21
1 2 7.640616 TCAAAATGTGTTCAATAAGTGCATG 57.359 32.000 0.00 0.00 0.00 4.06
2 3 8.836268 ATTCAAAATGTGTTCAATAAGTGCAT 57.164 26.923 0.00 0.00 0.00 3.96
3 4 8.549548 CAATTCAAAATGTGTTCAATAAGTGCA 58.450 29.630 0.00 0.00 0.00 4.57
4 5 8.550376 ACAATTCAAAATGTGTTCAATAAGTGC 58.450 29.630 0.00 0.00 0.00 4.40
9 10 9.906660 GTCCTACAATTCAAAATGTGTTCAATA 57.093 29.630 0.00 0.00 0.00 1.90
10 11 8.420222 TGTCCTACAATTCAAAATGTGTTCAAT 58.580 29.630 0.00 0.00 0.00 2.57
11 12 7.776107 TGTCCTACAATTCAAAATGTGTTCAA 58.224 30.769 0.00 0.00 0.00 2.69
30 31 3.872240 GCTTTAGGGTTGTGCATGTCCTA 60.872 47.826 0.00 0.00 0.00 2.94
33 34 2.162408 GAGCTTTAGGGTTGTGCATGTC 59.838 50.000 0.00 0.00 0.00 3.06
46 47 3.249559 GCAATCGATTGAGGGAGCTTTAG 59.750 47.826 36.10 10.15 40.14 1.85
47 48 3.206150 GCAATCGATTGAGGGAGCTTTA 58.794 45.455 36.10 0.00 40.14 1.85
51 52 0.530650 TCGCAATCGATTGAGGGAGC 60.531 55.000 36.10 20.99 40.21 4.70
81 82 0.674581 TGACGATGGAAAGGCAGCAG 60.675 55.000 0.00 0.00 0.00 4.24
90 91 0.452184 GACTCGCTCTGACGATGGAA 59.548 55.000 0.00 0.00 42.02 3.53
92 93 1.297967 CGACTCGCTCTGACGATGG 60.298 63.158 0.00 0.00 42.02 3.51
100 101 1.729472 CGATCAACAACGACTCGCTCT 60.729 52.381 0.00 0.00 0.00 4.09
101 102 0.635731 CGATCAACAACGACTCGCTC 59.364 55.000 0.00 0.00 0.00 5.03
105 106 2.060326 TCCACGATCAACAACGACTC 57.940 50.000 0.00 0.00 0.00 3.36
120 121 4.759183 GCCTTGAGGATTTCTATCATCCAC 59.241 45.833 0.06 0.00 42.63 4.02
127 128 3.464833 ACCATGGCCTTGAGGATTTCTAT 59.535 43.478 19.85 0.00 37.39 1.98
128 129 2.852449 ACCATGGCCTTGAGGATTTCTA 59.148 45.455 19.85 0.00 37.39 2.10
130 131 2.027385 GACCATGGCCTTGAGGATTTC 58.973 52.381 19.85 0.00 37.39 2.17
131 132 1.358787 TGACCATGGCCTTGAGGATTT 59.641 47.619 19.85 0.00 37.39 2.17
132 133 1.002069 TGACCATGGCCTTGAGGATT 58.998 50.000 19.85 0.00 37.39 3.01
133 134 1.229131 ATGACCATGGCCTTGAGGAT 58.771 50.000 19.85 5.47 37.39 3.24
140 141 2.849943 TGGTTTAGTATGACCATGGCCT 59.150 45.455 13.04 2.69 40.85 5.19
141 142 3.290948 TGGTTTAGTATGACCATGGCC 57.709 47.619 13.04 0.00 40.85 5.36
151 152 4.737578 TCTCTAGGGCGATGGTTTAGTAT 58.262 43.478 0.00 0.00 0.00 2.12
155 156 3.638860 TCTTCTCTAGGGCGATGGTTTA 58.361 45.455 0.00 0.00 0.00 2.01
156 157 2.467880 TCTTCTCTAGGGCGATGGTTT 58.532 47.619 0.00 0.00 0.00 3.27
162 163 4.954202 TCAATAGTTTCTTCTCTAGGGCGA 59.046 41.667 0.00 0.00 0.00 5.54
164 165 6.645306 ACTTCAATAGTTTCTTCTCTAGGGC 58.355 40.000 0.00 0.00 31.29 5.19
190 191 2.161855 TGTGCATTTTCCTGCGAAGAT 58.838 42.857 0.00 0.00 45.30 2.40
191 192 1.603456 TGTGCATTTTCCTGCGAAGA 58.397 45.000 0.00 0.00 45.30 2.87
192 193 2.642139 ATGTGCATTTTCCTGCGAAG 57.358 45.000 0.00 0.00 45.30 3.79
193 194 3.066621 GGATATGTGCATTTTCCTGCGAA 59.933 43.478 0.00 0.00 45.30 4.70
196 197 4.098349 TCTTGGATATGTGCATTTTCCTGC 59.902 41.667 0.00 0.00 42.62 4.85
203 204 4.458256 TGGGATCTTGGATATGTGCATT 57.542 40.909 0.00 0.00 0.00 3.56
206 207 2.887152 GGTTGGGATCTTGGATATGTGC 59.113 50.000 0.00 0.00 0.00 4.57
241 243 2.185350 CGGTGCCATCGAGCTCTT 59.815 61.111 12.85 0.00 0.00 2.85
247 249 4.077184 GACCACCGGTGCCATCGA 62.077 66.667 29.75 0.00 35.25 3.59
249 251 3.009192 TACGACCACCGGTGCCATC 62.009 63.158 29.75 22.43 43.93 3.51
250 252 2.998480 TACGACCACCGGTGCCAT 60.998 61.111 29.75 16.35 43.93 4.40
251 253 3.993584 GTACGACCACCGGTGCCA 61.994 66.667 29.75 8.33 43.93 4.92
252 254 4.747529 GGTACGACCACCGGTGCC 62.748 72.222 29.75 19.30 43.93 5.01
265 268 1.884579 TCCTCTCTGTCACGTTGGTAC 59.115 52.381 0.00 0.00 0.00 3.34
268 271 0.244994 CCTCCTCTCTGTCACGTTGG 59.755 60.000 0.00 0.00 0.00 3.77
272 275 0.962855 TCTGCCTCCTCTCTGTCACG 60.963 60.000 0.00 0.00 0.00 4.35
278 281 1.309688 GGTCCTCTGCCTCCTCTCT 59.690 63.158 0.00 0.00 0.00 3.10
288 291 1.610522 CCTTTGCAGTTTGGTCCTCTG 59.389 52.381 0.00 0.00 0.00 3.35
313 316 3.938334 TGTTATTGTGATGGTGACGATGG 59.062 43.478 0.00 0.00 0.00 3.51
315 318 5.106317 GGTTTGTTATTGTGATGGTGACGAT 60.106 40.000 0.00 0.00 0.00 3.73
324 327 5.646360 CGAGGTTAGGGTTTGTTATTGTGAT 59.354 40.000 0.00 0.00 0.00 3.06
330 333 2.306512 TGGCGAGGTTAGGGTTTGTTAT 59.693 45.455 0.00 0.00 0.00 1.89
347 350 0.813610 TGCCGGTCTATCATTTGGCG 60.814 55.000 1.90 0.00 45.34 5.69
350 353 2.620251 TCCTGCCGGTCTATCATTTG 57.380 50.000 1.90 0.00 0.00 2.32
353 356 2.705658 TGAATTCCTGCCGGTCTATCAT 59.294 45.455 1.90 0.00 0.00 2.45
354 357 2.115427 TGAATTCCTGCCGGTCTATCA 58.885 47.619 1.90 0.00 0.00 2.15
386 389 2.726691 GACGGTGTCGATTGTGGCG 61.727 63.158 0.00 0.00 40.11 5.69
393 396 0.175760 CCCATCTTGACGGTGTCGAT 59.824 55.000 0.00 0.00 40.11 3.59
405 408 1.673767 TTCTCAAGCCTCCCCATCTT 58.326 50.000 0.00 0.00 0.00 2.40
411 414 7.175347 AGAATAAATTTTTCTCAAGCCTCCC 57.825 36.000 0.00 0.00 0.00 4.30
429 432 1.474320 CGGTGCCAATCCGGAGAATAA 60.474 52.381 11.34 0.00 43.68 1.40
438 441 2.047655 TGACGACGGTGCCAATCC 60.048 61.111 0.00 0.00 0.00 3.01
442 445 3.583276 GATGGTGACGACGGTGCCA 62.583 63.158 0.00 4.37 33.88 4.92
452 455 1.132640 GCGCTTCGTTGATGGTGAC 59.867 57.895 0.00 0.00 0.00 3.67
455 458 3.788766 GCGCGCTTCGTTGATGGT 61.789 61.111 26.67 0.00 41.07 3.55
470 473 0.102481 AGTAGAGTTATGTGGCGGCG 59.898 55.000 0.51 0.51 0.00 6.46
471 474 3.447918 TTAGTAGAGTTATGTGGCGGC 57.552 47.619 0.00 0.00 0.00 6.53
492 495 8.598202 TCTAGTTTTTCTTACTTTGGGGTTTT 57.402 30.769 0.00 0.00 0.00 2.43
495 498 5.768662 GCTCTAGTTTTTCTTACTTTGGGGT 59.231 40.000 0.00 0.00 0.00 4.95
506 510 3.118592 CCGGATGGAGCTCTAGTTTTTCT 60.119 47.826 14.64 0.00 37.49 2.52
532 536 1.079405 CACGCACCAACCTACCGAT 60.079 57.895 0.00 0.00 0.00 4.18
538 542 0.179004 TTTGATCCACGCACCAACCT 60.179 50.000 0.00 0.00 0.00 3.50
539 543 0.671251 TTTTGATCCACGCACCAACC 59.329 50.000 0.00 0.00 0.00 3.77
540 544 2.327568 CATTTTGATCCACGCACCAAC 58.672 47.619 0.00 0.00 0.00 3.77
542 546 0.243365 GCATTTTGATCCACGCACCA 59.757 50.000 0.00 0.00 0.00 4.17
543 547 0.243365 TGCATTTTGATCCACGCACC 59.757 50.000 0.00 0.00 0.00 5.01
544 548 1.921887 CATGCATTTTGATCCACGCAC 59.078 47.619 0.00 0.00 31.22 5.34
545 549 1.817447 TCATGCATTTTGATCCACGCA 59.183 42.857 0.00 0.00 0.00 5.24
546 550 2.159338 AGTCATGCATTTTGATCCACGC 60.159 45.455 0.00 0.00 0.00 5.34
547 551 3.376234 AGAGTCATGCATTTTGATCCACG 59.624 43.478 0.00 0.00 0.00 4.94
548 552 4.978083 AGAGTCATGCATTTTGATCCAC 57.022 40.909 0.00 0.00 0.00 4.02
549 553 5.945191 TGTTAGAGTCATGCATTTTGATCCA 59.055 36.000 0.00 0.00 0.00 3.41
550 554 6.441093 TGTTAGAGTCATGCATTTTGATCC 57.559 37.500 0.00 0.00 0.00 3.36
551 555 7.375280 CGATTGTTAGAGTCATGCATTTTGATC 59.625 37.037 0.00 0.00 0.00 2.92
593 597 8.385111 CCAAAGCACATGATTTCACATTATTTC 58.615 33.333 0.00 0.00 30.39 2.17
666 681 7.735500 TGTTATAAACTAGCTAGCGTTGTTTG 58.264 34.615 28.65 11.50 33.63 2.93
668 683 6.534079 CCTGTTATAAACTAGCTAGCGTTGTT 59.466 38.462 20.91 12.46 0.00 2.83
904 919 2.846206 AGAGAGAGGCTGAGAGAGAGAA 59.154 50.000 0.00 0.00 0.00 2.87
907 922 3.327757 GGATAGAGAGAGGCTGAGAGAGA 59.672 52.174 0.00 0.00 0.00 3.10
908 923 3.328931 AGGATAGAGAGAGGCTGAGAGAG 59.671 52.174 0.00 0.00 0.00 3.20
909 924 3.326521 AGGATAGAGAGAGGCTGAGAGA 58.673 50.000 0.00 0.00 0.00 3.10
910 925 3.328931 AGAGGATAGAGAGAGGCTGAGAG 59.671 52.174 0.00 0.00 0.00 3.20
911 926 3.326521 AGAGGATAGAGAGAGGCTGAGA 58.673 50.000 0.00 0.00 0.00 3.27
912 927 3.560025 GGAGAGGATAGAGAGAGGCTGAG 60.560 56.522 0.00 0.00 0.00 3.35
962 977 2.417516 GATCAGCGCGGCCTAGAA 59.582 61.111 8.83 0.00 0.00 2.10
963 978 3.606662 GGATCAGCGCGGCCTAGA 61.607 66.667 8.83 0.00 0.00 2.43
964 979 3.231889 ATGGATCAGCGCGGCCTAG 62.232 63.158 8.83 0.00 0.00 3.02
1137 1156 3.319198 ATCACGCCGTGGTTCCCT 61.319 61.111 18.32 0.00 33.87 4.20
1299 1318 2.830285 GCGACAACAAAGGCGGTGT 61.830 57.895 0.00 0.00 0.00 4.16
1300 1319 2.051345 GCGACAACAAAGGCGGTG 60.051 61.111 0.00 0.00 0.00 4.94
1330 1349 6.190587 ACCCAAGATTTCTAAGGAATCAAGG 58.809 40.000 5.70 6.19 0.00 3.61
1468 1487 2.668556 CGATACCGTACAGCAGGCATAG 60.669 54.545 0.00 0.00 0.00 2.23
1549 1568 2.031069 CCATACTCATCAGTCCCGTACG 60.031 54.545 8.69 8.69 33.62 3.67
1550 1569 2.957006 ACCATACTCATCAGTCCCGTAC 59.043 50.000 0.00 0.00 33.62 3.67
1551 1570 2.956333 CACCATACTCATCAGTCCCGTA 59.044 50.000 0.00 0.00 33.62 4.02
1552 1571 1.757118 CACCATACTCATCAGTCCCGT 59.243 52.381 0.00 0.00 33.62 5.28
1553 1572 2.031870 TCACCATACTCATCAGTCCCG 58.968 52.381 0.00 0.00 33.62 5.14
1564 1583 2.173356 CACCACCATCCATCACCATACT 59.827 50.000 0.00 0.00 0.00 2.12
1616 1635 4.171234 TCTTCCTCCTCACCTTCATCTTT 58.829 43.478 0.00 0.00 0.00 2.52
1787 1808 7.036220 GGTATGTCATGCATATGTAGTACTCC 58.964 42.308 0.00 0.00 41.58 3.85
1788 1809 7.036220 GGGTATGTCATGCATATGTAGTACTC 58.964 42.308 0.00 0.00 41.58 2.59
1815 1836 1.528586 CGCACATCCTCGAATTGGATC 59.471 52.381 1.81 0.00 41.94 3.36
1865 1886 1.887707 GGCGATGAATGGGGACGAC 60.888 63.158 0.00 0.00 0.00 4.34
1866 1887 2.363172 TGGCGATGAATGGGGACGA 61.363 57.895 0.00 0.00 0.00 4.20
1892 1913 9.416794 CCCATTATGCGCAAACATAAATAAATA 57.583 29.630 17.11 0.00 43.68 1.40
1893 1914 7.095271 GCCCATTATGCGCAAACATAAATAAAT 60.095 33.333 17.11 0.00 43.68 1.40
1894 1915 6.201806 GCCCATTATGCGCAAACATAAATAAA 59.798 34.615 17.11 0.00 43.68 1.40
1895 1916 5.694006 GCCCATTATGCGCAAACATAAATAA 59.306 36.000 17.11 6.19 43.68 1.40
1896 1917 5.221322 TGCCCATTATGCGCAAACATAAATA 60.221 36.000 17.11 0.00 43.68 1.40
1897 1918 4.057432 GCCCATTATGCGCAAACATAAAT 58.943 39.130 17.11 4.94 43.68 1.40
1898 1919 3.118992 TGCCCATTATGCGCAAACATAAA 60.119 39.130 17.11 2.48 43.68 1.40
1899 1920 2.428530 TGCCCATTATGCGCAAACATAA 59.571 40.909 17.11 9.18 44.36 1.90
1900 1921 2.027385 TGCCCATTATGCGCAAACATA 58.973 42.857 17.11 0.00 0.00 2.29
1901 1922 0.822811 TGCCCATTATGCGCAAACAT 59.177 45.000 17.11 3.44 0.00 2.71
1902 1923 0.108898 GTGCCCATTATGCGCAAACA 60.109 50.000 17.11 0.46 39.02 2.83
1903 1924 0.173255 AGTGCCCATTATGCGCAAAC 59.827 50.000 17.11 2.99 41.59 2.93
1904 1925 0.455410 GAGTGCCCATTATGCGCAAA 59.545 50.000 17.11 10.98 41.59 3.68
1905 1926 0.394216 AGAGTGCCCATTATGCGCAA 60.394 50.000 17.11 0.00 41.59 4.85
1906 1927 0.467804 TAGAGTGCCCATTATGCGCA 59.532 50.000 14.96 14.96 41.59 6.09
1907 1928 1.593196 TTAGAGTGCCCATTATGCGC 58.407 50.000 0.00 0.00 39.48 6.09
1908 1929 4.539870 CAAATTAGAGTGCCCATTATGCG 58.460 43.478 0.00 0.00 0.00 4.73
1909 1930 4.202141 TGCAAATTAGAGTGCCCATTATGC 60.202 41.667 0.00 0.00 40.14 3.14
1910 1931 5.300034 TCTGCAAATTAGAGTGCCCATTATG 59.700 40.000 0.00 0.00 40.14 1.90
1911 1932 5.448654 TCTGCAAATTAGAGTGCCCATTAT 58.551 37.500 0.00 0.00 40.14 1.28
1912 1933 4.854173 TCTGCAAATTAGAGTGCCCATTA 58.146 39.130 0.00 0.00 40.14 1.90
1913 1934 3.700538 TCTGCAAATTAGAGTGCCCATT 58.299 40.909 0.00 0.00 40.14 3.16
1914 1935 3.370840 TCTGCAAATTAGAGTGCCCAT 57.629 42.857 0.00 0.00 40.14 4.00
1915 1936 2.877097 TCTGCAAATTAGAGTGCCCA 57.123 45.000 0.00 0.00 40.14 5.36
1916 1937 3.950395 AGAATCTGCAAATTAGAGTGCCC 59.050 43.478 0.00 0.00 40.14 5.36
1917 1938 6.683974 TTAGAATCTGCAAATTAGAGTGCC 57.316 37.500 0.00 0.00 40.14 5.01
1918 1939 8.970691 TTTTTAGAATCTGCAAATTAGAGTGC 57.029 30.769 0.00 0.00 41.29 4.40
1919 1940 9.565213 CCTTTTTAGAATCTGCAAATTAGAGTG 57.435 33.333 0.00 0.00 0.00 3.51
1961 1982 4.042062 TGCTATTGCTATTGCTATCCCACT 59.958 41.667 14.39 0.00 40.48 4.00
1962 1983 4.326826 TGCTATTGCTATTGCTATCCCAC 58.673 43.478 14.39 0.00 40.48 4.61
1963 1984 4.639078 TGCTATTGCTATTGCTATCCCA 57.361 40.909 14.39 0.00 40.48 4.37
1966 1987 9.880064 CATGATATTGCTATTGCTATTGCTATC 57.120 33.333 14.39 13.43 40.48 2.08
1967 1988 9.404848 ACATGATATTGCTATTGCTATTGCTAT 57.595 29.630 14.39 14.04 40.48 2.97
1968 1989 8.797350 ACATGATATTGCTATTGCTATTGCTA 57.203 30.769 14.39 8.34 40.48 3.49
1969 1990 7.148120 GGACATGATATTGCTATTGCTATTGCT 60.148 37.037 14.39 0.00 40.48 3.91
1970 1991 6.971184 GGACATGATATTGCTATTGCTATTGC 59.029 38.462 0.00 7.53 40.48 3.56
1971 1992 8.047413 TGGACATGATATTGCTATTGCTATTG 57.953 34.615 0.00 0.00 40.48 1.90
1972 1993 8.818622 ATGGACATGATATTGCTATTGCTATT 57.181 30.769 0.00 0.00 40.48 1.73
1973 1994 8.818622 AATGGACATGATATTGCTATTGCTAT 57.181 30.769 0.00 0.86 40.48 2.97
1974 1995 7.884354 TGAATGGACATGATATTGCTATTGCTA 59.116 33.333 0.00 0.00 40.48 3.49
1975 1996 6.717997 TGAATGGACATGATATTGCTATTGCT 59.282 34.615 0.00 0.00 40.48 3.91
1976 1997 6.916440 TGAATGGACATGATATTGCTATTGC 58.084 36.000 0.00 0.00 40.20 3.56
1977 1998 9.923143 ATTTGAATGGACATGATATTGCTATTG 57.077 29.630 0.00 0.00 0.00 1.90
2121 2149 9.016438 GTGGTTTTTAGGATTGTAAACATAGGA 57.984 33.333 0.00 0.00 33.33 2.94
2276 2313 9.775854 TTTATAATGTGGGCAATGGATTAATTG 57.224 29.630 0.00 0.00 39.98 2.32
2329 2369 6.752168 AGTAGATATATGCGTACGGGTTTTT 58.248 36.000 18.39 0.00 0.00 1.94
2409 2449 4.466370 TGAGTACAACCACCCTCATAAGAG 59.534 45.833 0.00 0.00 41.72 2.85
2415 2455 1.691976 CTGTGAGTACAACCACCCTCA 59.308 52.381 0.00 0.00 36.14 3.86
2437 2477 0.621609 TAAGGTTTGACCCCCGATGG 59.378 55.000 0.00 0.00 39.75 3.51
2454 2494 3.255642 GGCACAAAGAGCATCAAACCTAA 59.744 43.478 0.00 0.00 37.82 2.69
2475 2515 6.874134 CGAAAGAATATATCACCTTAGTGGGG 59.126 42.308 0.00 0.00 44.64 4.96
2552 2592 3.932710 CACACACTCACACAACAACTACT 59.067 43.478 0.00 0.00 0.00 2.57
2600 2640 1.266940 CGAGTACAGTGTAGACGCTCG 60.267 57.143 20.07 20.07 38.36 5.03
2646 2686 1.305297 TGGAGTGAGCGGAGATGGT 60.305 57.895 0.00 0.00 0.00 3.55
2732 2772 8.822855 TGTGTATACTAAATAATGAACAAGGCG 58.177 33.333 4.17 0.00 0.00 5.52
2788 2828 6.152379 TCAATTCGATATGTCTTGGAGATCG 58.848 40.000 0.00 0.00 40.51 3.69
2879 2931 8.657074 ACAATCTTTTTCATGGCATTCATATG 57.343 30.769 0.00 0.00 34.12 1.78
2880 2932 9.976511 CTACAATCTTTTTCATGGCATTCATAT 57.023 29.630 0.00 0.00 34.12 1.78
2888 2940 7.816640 TCTAACACTACAATCTTTTTCATGGC 58.183 34.615 0.00 0.00 0.00 4.40
2996 3049 7.499292 TGTTTGAGTTCATGTCAAAATTCCAT 58.501 30.769 10.54 0.00 43.68 3.41
2997 3050 6.871844 TGTTTGAGTTCATGTCAAAATTCCA 58.128 32.000 10.54 3.85 43.68 3.53
3021 3074 4.380841 TCTCAAAGTACAATACGGCGAT 57.619 40.909 16.62 0.00 0.00 4.58
3052 3105 9.815936 CAAAATTCCTATGAAAATCTTTGCAAC 57.184 29.630 0.00 0.00 33.32 4.17
3057 3110 8.596293 TGCTCCAAAATTCCTATGAAAATCTTT 58.404 29.630 0.00 0.00 33.32 2.52
3136 3190 4.974721 ACCAGGCAAGCAACCCGG 62.975 66.667 0.00 0.00 0.00 5.73
3137 3191 3.673484 CACCAGGCAAGCAACCCG 61.673 66.667 0.00 0.00 0.00 5.28
3156 3210 1.135972 CGCGAGCTAAAAACTGTGCAT 60.136 47.619 0.00 0.00 0.00 3.96
3158 3212 0.234884 ACGCGAGCTAAAAACTGTGC 59.765 50.000 15.93 0.00 0.00 4.57
3209 3264 4.274978 TGCACATCCAATGAAGATGATGT 58.725 39.130 7.70 0.00 46.41 3.06
3274 3329 6.293004 TCATACATGACTGATGTTGTACCA 57.707 37.500 0.00 0.00 43.20 3.25
3298 3353 7.431249 AGGATCATGCACATAAATAGCAAAAG 58.569 34.615 0.00 0.00 42.15 2.27
3299 3354 7.350744 AGGATCATGCACATAAATAGCAAAA 57.649 32.000 0.00 0.00 42.15 2.44
3300 3355 6.964807 AGGATCATGCACATAAATAGCAAA 57.035 33.333 0.00 0.00 42.15 3.68
3301 3356 6.964807 AAGGATCATGCACATAAATAGCAA 57.035 33.333 0.00 0.00 42.15 3.91
3302 3357 6.321945 ACAAAGGATCATGCACATAAATAGCA 59.678 34.615 0.00 0.00 43.14 3.49
3303 3358 6.639686 CACAAAGGATCATGCACATAAATAGC 59.360 38.462 0.00 0.00 0.00 2.97
3304 3359 7.646526 CACACAAAGGATCATGCACATAAATAG 59.353 37.037 0.00 0.00 0.00 1.73
3305 3360 7.122501 ACACACAAAGGATCATGCACATAAATA 59.877 33.333 0.00 0.00 0.00 1.40
3306 3361 6.071221 ACACACAAAGGATCATGCACATAAAT 60.071 34.615 0.00 0.00 0.00 1.40
3307 3362 5.243507 ACACACAAAGGATCATGCACATAAA 59.756 36.000 0.00 0.00 0.00 1.40
3308 3363 4.766373 ACACACAAAGGATCATGCACATAA 59.234 37.500 0.00 0.00 0.00 1.90
3309 3364 4.156373 CACACACAAAGGATCATGCACATA 59.844 41.667 0.00 0.00 0.00 2.29
3310 3365 3.057104 CACACACAAAGGATCATGCACAT 60.057 43.478 0.00 0.00 0.00 3.21
3311 3366 2.293955 CACACACAAAGGATCATGCACA 59.706 45.455 0.00 0.00 0.00 4.57
3312 3367 2.294233 ACACACACAAAGGATCATGCAC 59.706 45.455 0.00 0.00 0.00 4.57
3313 3368 2.293955 CACACACACAAAGGATCATGCA 59.706 45.455 0.00 0.00 0.00 3.96
3314 3369 2.923605 GCACACACACAAAGGATCATGC 60.924 50.000 0.00 0.00 0.00 4.06
3315 3370 2.666344 CGCACACACACAAAGGATCATG 60.666 50.000 0.00 0.00 0.00 3.07
3316 3371 1.536766 CGCACACACACAAAGGATCAT 59.463 47.619 0.00 0.00 0.00 2.45
3317 3372 0.943673 CGCACACACACAAAGGATCA 59.056 50.000 0.00 0.00 0.00 2.92
3318 3373 0.944386 ACGCACACACACAAAGGATC 59.056 50.000 0.00 0.00 0.00 3.36
3319 3374 1.065401 CAACGCACACACACAAAGGAT 59.935 47.619 0.00 0.00 0.00 3.24
3320 3375 0.449786 CAACGCACACACACAAAGGA 59.550 50.000 0.00 0.00 0.00 3.36
3321 3376 1.139226 GCAACGCACACACACAAAGG 61.139 55.000 0.00 0.00 0.00 3.11
3340 3419 3.503363 ACTATGATGCACACAACCAACAG 59.497 43.478 0.00 0.00 0.00 3.16
3377 3456 8.852135 ACAAATCATGCAATTCTTTTCCATTTT 58.148 25.926 0.00 0.00 0.00 1.82
3378 3457 8.398878 ACAAATCATGCAATTCTTTTCCATTT 57.601 26.923 0.00 0.00 0.00 2.32
3379 3458 7.989416 ACAAATCATGCAATTCTTTTCCATT 57.011 28.000 0.00 0.00 0.00 3.16
3380 3459 7.767198 CCTACAAATCATGCAATTCTTTTCCAT 59.233 33.333 0.00 0.00 0.00 3.41
3381 3460 7.039152 TCCTACAAATCATGCAATTCTTTTCCA 60.039 33.333 0.00 0.00 0.00 3.53
3382 3461 7.322664 TCCTACAAATCATGCAATTCTTTTCC 58.677 34.615 0.00 0.00 0.00 3.13
3384 3463 9.158233 CAATCCTACAAATCATGCAATTCTTTT 57.842 29.630 0.00 0.00 0.00 2.27
3388 3533 8.761497 CATTCAATCCTACAAATCATGCAATTC 58.239 33.333 0.00 0.00 0.00 2.17
3538 3691 9.426837 ACTCAAATGATGATGGTTTAATTTGTG 57.573 29.630 0.00 0.00 37.44 3.33
3546 3699 6.434965 TCATGTCACTCAAATGATGATGGTTT 59.565 34.615 0.00 0.00 37.44 3.27
3653 3812 9.774742 CATTGTAATTTAGTGTAGGAAAAGAGC 57.225 33.333 0.00 0.00 0.00 4.09
3666 3825 7.378461 CAGCAAACGAACACATTGTAATTTAGT 59.622 33.333 0.00 0.00 0.00 2.24
3673 3832 3.623510 TCACAGCAAACGAACACATTGTA 59.376 39.130 0.00 0.00 0.00 2.41
3675 3834 3.063670 TCACAGCAAACGAACACATTG 57.936 42.857 0.00 0.00 0.00 2.82
3709 3868 4.576053 CACTAGAATTTCCGAATCCATGCA 59.424 41.667 0.00 0.00 0.00 3.96
3740 3899 7.733773 TGTACTATCCAGATTCCTGAAAGAA 57.266 36.000 0.00 0.00 43.02 2.52
3787 3947 7.054491 AGGTTTAGAAAACGTAGTGTTAGGA 57.946 36.000 0.00 0.00 45.00 2.94
3797 3957 2.804527 GGCTCGAAGGTTTAGAAAACGT 59.195 45.455 0.00 0.00 0.00 3.99
3860 4027 5.766174 GGAATGACAGTGGTAACCTTGTTTA 59.234 40.000 0.00 0.00 0.00 2.01
3872 4039 5.390885 CGATTGTTGTAAGGAATGACAGTGG 60.391 44.000 0.00 0.00 0.00 4.00
3876 4043 3.438781 GGCGATTGTTGTAAGGAATGACA 59.561 43.478 0.00 0.00 0.00 3.58
3877 4044 3.438781 TGGCGATTGTTGTAAGGAATGAC 59.561 43.478 0.00 0.00 0.00 3.06
3935 4103 5.081032 TGGTAGGGTTTTTAATCCCACAAG 58.919 41.667 10.46 0.00 45.64 3.16
4013 4187 9.189156 TGATCCATTGGAATTTTTCTAGGTTAG 57.811 33.333 9.98 0.00 34.34 2.34
4084 4267 9.713684 TTCAACCCAATAAGATTGGAGATTATT 57.286 29.630 17.94 2.29 42.06 1.40
4197 4385 6.917533 ACTTGACCAAAGCAGATAAGAAATG 58.082 36.000 0.00 0.00 39.76 2.32
4205 4393 4.090761 TCAGAACTTGACCAAAGCAGAT 57.909 40.909 0.00 0.00 39.76 2.90
4278 4493 4.395959 ACGTTTGACTTGAGACTAACCA 57.604 40.909 0.00 0.00 0.00 3.67
4707 4936 3.182972 ACGTACGCAAATAAGACACACAC 59.817 43.478 16.72 0.00 0.00 3.82
4708 4937 3.182772 CACGTACGCAAATAAGACACACA 59.817 43.478 16.72 0.00 0.00 3.72
4709 4938 3.182972 ACACGTACGCAAATAAGACACAC 59.817 43.478 16.72 0.00 0.00 3.82
4710 4939 3.182772 CACACGTACGCAAATAAGACACA 59.817 43.478 16.72 0.00 0.00 3.72
4897 5126 0.321122 AGAAGGAAGTGAAGGCGCAG 60.321 55.000 10.83 0.00 0.00 5.18
4898 5127 0.603707 CAGAAGGAAGTGAAGGCGCA 60.604 55.000 10.83 0.00 0.00 6.09
4899 5128 0.320771 TCAGAAGGAAGTGAAGGCGC 60.321 55.000 0.00 0.00 0.00 6.53
4900 5129 2.275318 GATCAGAAGGAAGTGAAGGCG 58.725 52.381 0.00 0.00 0.00 5.52
4901 5130 2.093973 TCGATCAGAAGGAAGTGAAGGC 60.094 50.000 0.00 0.00 0.00 4.35
4902 5131 3.876274 TCGATCAGAAGGAAGTGAAGG 57.124 47.619 0.00 0.00 0.00 3.46
4903 5132 4.041049 CGATCGATCAGAAGGAAGTGAAG 58.959 47.826 24.40 0.00 0.00 3.02
4904 5133 3.181486 CCGATCGATCAGAAGGAAGTGAA 60.181 47.826 24.40 0.00 34.08 3.18
4905 5134 2.359214 CCGATCGATCAGAAGGAAGTGA 59.641 50.000 24.40 0.00 34.08 3.41
4906 5135 2.736978 CCGATCGATCAGAAGGAAGTG 58.263 52.381 24.40 4.62 34.08 3.16
4907 5136 1.067821 GCCGATCGATCAGAAGGAAGT 59.932 52.381 24.40 0.00 34.08 3.01
4908 5137 1.777101 GCCGATCGATCAGAAGGAAG 58.223 55.000 24.40 6.01 34.08 3.46
4909 5138 0.030773 CGCCGATCGATCAGAAGGAA 59.969 55.000 24.40 0.00 41.67 3.36
4910 5139 1.654774 CGCCGATCGATCAGAAGGA 59.345 57.895 24.40 0.00 41.67 3.36
4911 5140 1.372251 CCGCCGATCGATCAGAAGG 60.372 63.158 24.40 17.55 41.67 3.46
4912 5141 2.018866 GCCGCCGATCGATCAGAAG 61.019 63.158 24.40 11.41 41.67 2.85
4913 5142 2.027605 GCCGCCGATCGATCAGAA 59.972 61.111 24.40 0.00 41.67 3.02
4914 5143 4.328231 CGCCGCCGATCGATCAGA 62.328 66.667 24.40 0.00 41.67 3.27
4915 5144 4.328231 TCGCCGCCGATCGATCAG 62.328 66.667 24.40 14.99 41.67 2.90
4916 5145 4.624117 GTCGCCGCCGATCGATCA 62.624 66.667 24.40 0.59 46.38 2.92
4957 5186 0.389391 GGCCGATCGATCAGAAGGAA 59.611 55.000 24.40 0.00 34.08 3.36
5007 5236 5.239525 GCTTCTACCATACCCAGCTAATTTG 59.760 44.000 0.00 0.00 0.00 2.32
5151 5398 3.503827 TTAGCACATCACGACTGTAGG 57.496 47.619 0.00 0.00 0.00 3.18
5206 5463 1.172812 GGGAAATATGAGGCGTGCCC 61.173 60.000 7.39 0.00 36.58 5.36
5232 5489 6.096423 GGTGCCTTATATGAGATACACGGATA 59.904 42.308 0.00 0.00 0.00 2.59
5238 5495 9.368416 GATATAGGGTGCCTTATATGAGATACA 57.632 37.037 14.93 0.00 34.61 2.29
5250 5507 3.881871 TGGTATGGATATAGGGTGCCTT 58.118 45.455 0.00 0.00 34.61 4.35
5251 7608 3.577968 TGGTATGGATATAGGGTGCCT 57.422 47.619 0.00 0.00 37.71 4.75
5270 7627 2.686602 AGCTCACGCTGCATGTATG 58.313 52.632 0.00 0.00 46.86 2.39
5297 7654 3.326733 TTGTTGTCCGTTGTTCGATTG 57.673 42.857 0.00 0.00 42.86 2.67
5298 7655 4.358494 TTTTGTTGTCCGTTGTTCGATT 57.642 36.364 0.00 0.00 42.86 3.34
5302 7659 3.040099 CCGATTTTGTTGTCCGTTGTTC 58.960 45.455 0.00 0.00 0.00 3.18
5420 7801 2.977808 TCCCACTCCTCCTCCAATATC 58.022 52.381 0.00 0.00 0.00 1.63
5484 7865 1.742146 CCGCAGATGCCTACAGCTA 59.258 57.895 0.00 0.00 41.66 3.32
5505 7886 2.043664 TCCTCTGACAAGATCCTCCACT 59.956 50.000 0.00 0.00 0.00 4.00
5519 7900 0.253868 TCCTCCTCCTCCTCCTCTGA 60.254 60.000 0.00 0.00 0.00 3.27
5521 7902 1.655114 GCTCCTCCTCCTCCTCCTCT 61.655 65.000 0.00 0.00 0.00 3.69
5523 7904 1.625565 AGCTCCTCCTCCTCCTCCT 60.626 63.158 0.00 0.00 0.00 3.69
5535 7917 1.078848 GGCAATGACGACAGCTCCT 60.079 57.895 0.00 0.00 0.00 3.69
5653 8047 3.780173 GAGGCGAAGGAGGCAGCT 61.780 66.667 0.00 0.00 39.37 4.24
5796 8190 4.554036 GGATGCCGGTGGAGCTCC 62.554 72.222 26.78 26.78 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.