Multiple sequence alignment - TraesCS2D01G389700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G389700 chr2D 100.000 4409 0 0 1 4409 496381809 496377401 0.000000e+00 8142.0
1 TraesCS2D01G389700 chr2D 88.073 218 15 7 4076 4291 496352921 496352713 9.470000e-62 248.0
2 TraesCS2D01G389700 chr2D 87.143 70 7 2 3653 3720 579054605 579054674 1.310000e-10 78.7
3 TraesCS2D01G389700 chr2D 85.714 70 5 3 3654 3723 378172651 378172587 7.910000e-08 69.4
4 TraesCS2D01G389700 chr2B 93.973 3202 112 35 666 3856 583534179 583531048 0.000000e+00 4769.0
5 TraesCS2D01G389700 chr2B 82.222 405 37 15 226 600 583534592 583534193 2.560000e-82 316.0
6 TraesCS2D01G389700 chr2B 91.176 204 14 4 4025 4225 583528018 583527816 1.560000e-69 274.0
7 TraesCS2D01G389700 chr2B 85.199 277 29 10 4025 4294 583530620 583530349 1.560000e-69 274.0
8 TraesCS2D01G389700 chr2B 89.474 76 6 2 4217 4291 583525511 583525437 1.310000e-15 95.3
9 TraesCS2D01G389700 chr2A 93.360 2997 140 26 225 3190 641603352 641600384 0.000000e+00 4377.0
10 TraesCS2D01G389700 chr2A 90.845 426 31 4 3239 3661 641600364 641599944 8.280000e-157 564.0
11 TraesCS2D01G389700 chr2A 86.802 197 9 7 4029 4208 641598841 641598645 2.080000e-48 204.0
12 TraesCS2D01G389700 chr5A 90.196 459 38 5 2628 3086 210478564 210478113 3.800000e-165 592.0
13 TraesCS2D01G389700 chr5A 87.651 332 25 9 916 1247 210488224 210487909 5.390000e-99 372.0
14 TraesCS2D01G389700 chr5A 95.062 162 8 0 1674 1835 210485275 210485114 5.660000e-64 255.0
15 TraesCS2D01G389700 chr5A 94.512 164 9 0 1948 2111 210484738 210484575 2.040000e-63 254.0
16 TraesCS2D01G389700 chr5A 94.231 156 9 0 2235 2390 210480927 210480772 5.700000e-59 239.0
17 TraesCS2D01G389700 chr5A 96.094 128 5 0 2110 2237 210481211 210481084 4.470000e-50 209.0
18 TraesCS2D01G389700 chr5A 91.473 129 11 0 1548 1676 210485489 210485361 1.260000e-40 178.0
19 TraesCS2D01G389700 chr5A 94.915 59 3 0 1245 1303 210487781 210487723 4.700000e-15 93.5
20 TraesCS2D01G389700 chr5D 89.325 459 42 3 2628 3086 181882820 181883271 1.780000e-158 569.0
21 TraesCS2D01G389700 chr5D 88.855 332 21 9 916 1247 181874307 181874622 1.150000e-105 394.0
22 TraesCS2D01G389700 chr5D 96.996 233 7 0 1 233 63883095 63882863 4.130000e-105 392.0
23 TraesCS2D01G389700 chr5D 89.831 236 24 0 2390 2625 181882407 181882642 1.990000e-78 303.0
24 TraesCS2D01G389700 chr5D 95.808 167 7 0 1945 2111 181877806 181877972 2.020000e-68 270.0
25 TraesCS2D01G389700 chr5D 95.062 162 8 0 1674 1835 181877272 181877433 5.660000e-64 255.0
26 TraesCS2D01G389700 chr5D 94.231 156 9 0 2235 2390 181880459 181880614 5.700000e-59 239.0
27 TraesCS2D01G389700 chr5D 95.312 128 6 0 2110 2237 181880174 181880301 2.080000e-48 204.0
28 TraesCS2D01G389700 chr5D 91.473 129 11 0 1548 1676 181877058 181877186 1.260000e-40 178.0
29 TraesCS2D01G389700 chr5D 94.915 59 3 0 1245 1303 181874750 181874808 4.700000e-15 93.5
30 TraesCS2D01G389700 chr5D 85.135 74 9 2 3652 3723 241831812 241831739 1.700000e-09 75.0
31 TraesCS2D01G389700 chr5B 88.453 459 40 6 2628 3086 153193169 153193614 3.880000e-150 542.0
32 TraesCS2D01G389700 chr5B 88.855 332 21 9 916 1247 153173350 153173665 1.150000e-105 394.0
33 TraesCS2D01G389700 chr5B 88.983 236 26 0 2390 2625 153192756 153192991 4.310000e-75 292.0
34 TraesCS2D01G389700 chr5B 95.210 167 8 0 1945 2111 153182288 153182454 9.400000e-67 265.0
35 TraesCS2D01G389700 chr5B 94.444 162 9 0 1674 1835 153181754 153181915 2.630000e-62 250.0
36 TraesCS2D01G389700 chr5B 94.872 156 8 0 2235 2390 153184769 153184924 1.220000e-60 244.0
37 TraesCS2D01G389700 chr5B 95.312 128 6 0 2110 2237 153184485 153184612 2.080000e-48 204.0
38 TraesCS2D01G389700 chr5B 90.698 129 12 0 1548 1676 153181541 153181669 5.860000e-39 172.0
39 TraesCS2D01G389700 chr5B 93.220 59 4 0 1245 1303 153173793 153173851 2.180000e-13 87.9
40 TraesCS2D01G389700 chr7D 97.403 231 6 0 1 231 257442520 257442750 1.150000e-105 394.0
41 TraesCS2D01G389700 chr7D 97.414 232 5 1 1 231 410846300 410846531 1.150000e-105 394.0
42 TraesCS2D01G389700 chr7D 87.500 64 6 2 3665 3726 185186830 185186767 6.120000e-09 73.1
43 TraesCS2D01G389700 chr7D 100.000 31 0 0 4321 4351 84419726 84419696 1.710000e-04 58.4
44 TraesCS2D01G389700 chr6D 97.391 230 6 0 2 231 193488957 193489186 4.130000e-105 392.0
45 TraesCS2D01G389700 chr6D 96.970 231 7 0 1 231 305231936 305231706 5.350000e-104 388.0
46 TraesCS2D01G389700 chr6D 100.000 29 0 0 3621 3649 85580381 85580353 2.000000e-03 54.7
47 TraesCS2D01G389700 chr3D 96.970 231 7 0 1 231 64732510 64732280 5.350000e-104 388.0
48 TraesCS2D01G389700 chr3D 90.323 62 4 2 3665 3725 883118 883178 3.660000e-11 80.5
49 TraesCS2D01G389700 chr3D 96.970 33 1 0 3621 3653 313307633 313307601 6.160000e-04 56.5
50 TraesCS2D01G389700 chr1D 97.778 225 5 0 1 225 62083332 62083556 5.350000e-104 388.0
51 TraesCS2D01G389700 chr1D 95.436 241 11 0 1 241 313225910 313225670 6.920000e-103 385.0
52 TraesCS2D01G389700 chr6A 96.186 236 8 1 1 236 178701851 178701617 6.920000e-103 385.0
53 TraesCS2D01G389700 chr6A 92.683 41 3 0 3606 3646 557965837 557965797 4.760000e-05 60.2
54 TraesCS2D01G389700 chrUn 93.056 72 5 0 3652 3723 30123197 30123126 6.030000e-19 106.0
55 TraesCS2D01G389700 chr3A 91.176 68 5 1 3649 3715 127787174 127787241 1.690000e-14 91.6
56 TraesCS2D01G389700 chr1B 89.231 65 7 0 3662 3726 597430444 597430380 1.020000e-11 82.4
57 TraesCS2D01G389700 chr1B 90.000 60 5 1 3665 3723 652293975 652294034 4.730000e-10 76.8
58 TraesCS2D01G389700 chr1B 100.000 29 0 0 3621 3649 105576671 105576699 2.000000e-03 54.7
59 TraesCS2D01G389700 chr4A 91.489 47 3 1 3604 3649 736398649 736398603 3.680000e-06 63.9
60 TraesCS2D01G389700 chr3B 100.000 28 0 0 4321 4348 731255300 731255327 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G389700 chr2D 496377401 496381809 4408 True 8142.000000 8142 100.000000 1 4409 1 chr2D.!!$R3 4408
1 TraesCS2D01G389700 chr2B 583525437 583534592 9155 True 1145.660000 4769 88.408800 226 4294 5 chr2B.!!$R1 4068
2 TraesCS2D01G389700 chr2A 641598645 641603352 4707 True 1715.000000 4377 90.335667 225 4208 3 chr2A.!!$R1 3983
3 TraesCS2D01G389700 chr5A 210478113 210488224 10111 True 274.062500 592 93.016750 916 3086 8 chr5A.!!$R1 2170
4 TraesCS2D01G389700 chr5D 181874307 181883271 8964 False 278.388889 569 92.756889 916 3086 9 chr5D.!!$F1 2170
5 TraesCS2D01G389700 chr5B 153192756 153193614 858 False 417.000000 542 88.718000 2390 3086 2 chr5B.!!$F3 696
6 TraesCS2D01G389700 chr5B 153173350 153173851 501 False 240.950000 394 91.037500 916 1303 2 chr5B.!!$F1 387
7 TraesCS2D01G389700 chr5B 153181541 153184924 3383 False 227.000000 265 94.107200 1548 2390 5 chr5B.!!$F2 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.183492 AAACAGAAGCTGGCACTGGA 59.817 50.0 17.92 0.0 35.51 3.86 F
264 265 0.457851 CGTCCCTTCTCCTGCTACAG 59.542 60.0 0.00 0.0 0.00 2.74 F
427 461 0.771127 TGGGAAGAGTGTGAAAGGGG 59.229 55.0 0.00 0.0 0.00 4.79 F
1740 4108 0.985490 AAGCCAAGCTAGAGGGGGAG 60.985 60.0 0.00 0.0 38.25 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 4123 1.203287 TGTCCAGACGAGCTTGAGATG 59.797 52.381 8.31 3.04 0.00 2.90 R
2007 4638 1.813513 CACGCCCATTCCTATCATCC 58.186 55.000 0.00 0.00 0.00 3.51 R
2148 8312 2.132517 TTTCGCCGTCAGACGCACTA 62.133 55.000 18.02 0.98 40.91 2.74 R
3539 11838 0.249238 CACTCCGATAGCCTGACAGC 60.249 60.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.540515 GTCCAAGAAAGATCATCGCGA 58.459 47.619 13.09 13.09 0.00 5.87
21 22 2.930040 GTCCAAGAAAGATCATCGCGAA 59.070 45.455 15.24 0.00 0.00 4.70
22 23 3.000724 GTCCAAGAAAGATCATCGCGAAG 59.999 47.826 15.24 9.61 0.00 3.79
23 24 3.119137 TCCAAGAAAGATCATCGCGAAGA 60.119 43.478 17.13 17.13 0.00 2.87
24 25 3.806521 CCAAGAAAGATCATCGCGAAGAT 59.193 43.478 25.28 25.28 41.01 2.40
25 26 4.272018 CCAAGAAAGATCATCGCGAAGATT 59.728 41.667 25.68 12.74 37.52 2.40
26 27 5.220739 CCAAGAAAGATCATCGCGAAGATTT 60.221 40.000 25.68 18.52 37.52 2.17
27 28 5.649602 AGAAAGATCATCGCGAAGATTTC 57.350 39.130 25.68 24.13 37.52 2.17
28 29 5.111989 AGAAAGATCATCGCGAAGATTTCA 58.888 37.500 28.03 7.46 37.52 2.69
29 30 5.757320 AGAAAGATCATCGCGAAGATTTCAT 59.243 36.000 28.03 17.38 37.52 2.57
30 31 5.998454 AAGATCATCGCGAAGATTTCATT 57.002 34.783 25.68 15.75 37.52 2.57
31 32 5.588568 AGATCATCGCGAAGATTTCATTC 57.411 39.130 25.68 14.04 37.52 2.67
32 33 4.450419 AGATCATCGCGAAGATTTCATTCC 59.550 41.667 25.68 12.44 37.52 3.01
33 34 2.539688 TCATCGCGAAGATTTCATTCCG 59.460 45.455 15.24 0.00 37.52 4.30
34 35 2.004583 TCGCGAAGATTTCATTCCGT 57.995 45.000 6.20 0.00 0.00 4.69
35 36 2.343101 TCGCGAAGATTTCATTCCGTT 58.657 42.857 6.20 0.00 0.00 4.44
36 37 2.739913 TCGCGAAGATTTCATTCCGTTT 59.260 40.909 6.20 0.00 0.00 3.60
37 38 2.840176 CGCGAAGATTTCATTCCGTTTG 59.160 45.455 0.00 0.00 0.00 2.93
38 39 3.171277 GCGAAGATTTCATTCCGTTTGG 58.829 45.455 0.00 0.00 0.00 3.28
39 40 3.119990 GCGAAGATTTCATTCCGTTTGGA 60.120 43.478 0.00 0.00 44.61 3.53
40 41 4.403453 CGAAGATTTCATTCCGTTTGGAC 58.597 43.478 0.00 0.00 46.45 4.02
41 42 4.154195 CGAAGATTTCATTCCGTTTGGACT 59.846 41.667 0.00 0.00 46.45 3.85
42 43 5.629079 AAGATTTCATTCCGTTTGGACTC 57.371 39.130 0.00 0.00 46.45 3.36
43 44 4.010349 AGATTTCATTCCGTTTGGACTCC 58.990 43.478 0.00 0.00 46.45 3.85
44 45 1.803334 TTCATTCCGTTTGGACTCCG 58.197 50.000 0.00 0.00 46.45 4.63
45 46 0.682852 TCATTCCGTTTGGACTCCGT 59.317 50.000 0.00 0.00 46.45 4.69
46 47 1.071071 TCATTCCGTTTGGACTCCGTT 59.929 47.619 0.00 0.00 46.45 4.44
47 48 1.877443 CATTCCGTTTGGACTCCGTTT 59.123 47.619 0.00 0.00 46.45 3.60
48 49 1.301423 TTCCGTTTGGACTCCGTTTG 58.699 50.000 0.00 0.00 46.45 2.93
49 50 0.533308 TCCGTTTGGACTCCGTTTGG 60.533 55.000 0.00 0.00 40.17 3.28
50 51 0.816421 CCGTTTGGACTCCGTTTGGT 60.816 55.000 0.00 0.00 37.49 3.67
51 52 1.540797 CCGTTTGGACTCCGTTTGGTA 60.541 52.381 0.00 0.00 37.49 3.25
52 53 2.419667 CGTTTGGACTCCGTTTGGTAT 58.580 47.619 0.00 0.00 36.30 2.73
53 54 2.809696 CGTTTGGACTCCGTTTGGTATT 59.190 45.455 0.00 0.00 36.30 1.89
54 55 3.120442 CGTTTGGACTCCGTTTGGTATTC 60.120 47.826 0.00 0.00 36.30 1.75
55 56 2.773993 TGGACTCCGTTTGGTATTCC 57.226 50.000 0.00 0.00 36.30 3.01
56 57 2.262637 TGGACTCCGTTTGGTATTCCT 58.737 47.619 0.00 0.00 36.30 3.36
57 58 2.640826 TGGACTCCGTTTGGTATTCCTT 59.359 45.455 0.00 0.00 36.30 3.36
58 59 3.073356 TGGACTCCGTTTGGTATTCCTTT 59.927 43.478 0.00 0.00 36.30 3.11
59 60 4.077108 GGACTCCGTTTGGTATTCCTTTT 58.923 43.478 0.00 0.00 36.30 2.27
60 61 4.155462 GGACTCCGTTTGGTATTCCTTTTC 59.845 45.833 0.00 0.00 36.30 2.29
61 62 4.981812 ACTCCGTTTGGTATTCCTTTTCT 58.018 39.130 0.00 0.00 36.30 2.52
62 63 6.117975 ACTCCGTTTGGTATTCCTTTTCTA 57.882 37.500 0.00 0.00 36.30 2.10
63 64 5.936372 ACTCCGTTTGGTATTCCTTTTCTAC 59.064 40.000 0.00 0.00 36.30 2.59
64 65 4.931002 TCCGTTTGGTATTCCTTTTCTACG 59.069 41.667 0.00 0.00 36.30 3.51
65 66 4.931002 CCGTTTGGTATTCCTTTTCTACGA 59.069 41.667 0.00 0.00 34.23 3.43
66 67 5.409214 CCGTTTGGTATTCCTTTTCTACGAA 59.591 40.000 0.00 0.00 34.23 3.85
67 68 6.073112 CCGTTTGGTATTCCTTTTCTACGAAA 60.073 38.462 0.00 0.00 34.23 3.46
68 69 6.793680 CGTTTGGTATTCCTTTTCTACGAAAC 59.206 38.462 0.00 8.55 39.06 2.78
69 70 7.307573 CGTTTGGTATTCCTTTTCTACGAAACT 60.308 37.037 13.68 0.00 39.68 2.66
70 71 7.662604 TTGGTATTCCTTTTCTACGAAACTC 57.337 36.000 0.00 0.00 34.23 3.01
71 72 7.001099 TGGTATTCCTTTTCTACGAAACTCT 57.999 36.000 0.00 0.00 34.23 3.24
72 73 8.125978 TGGTATTCCTTTTCTACGAAACTCTA 57.874 34.615 0.00 0.00 34.23 2.43
73 74 8.587608 TGGTATTCCTTTTCTACGAAACTCTAA 58.412 33.333 0.00 0.00 34.23 2.10
74 75 9.428097 GGTATTCCTTTTCTACGAAACTCTAAA 57.572 33.333 0.00 0.00 0.00 1.85
79 80 9.649167 TCCTTTTCTACGAAACTCTAAAATAGG 57.351 33.333 0.00 0.00 0.00 2.57
80 81 8.388853 CCTTTTCTACGAAACTCTAAAATAGGC 58.611 37.037 0.00 0.00 0.00 3.93
81 82 8.836268 TTTTCTACGAAACTCTAAAATAGGCA 57.164 30.769 0.00 0.00 0.00 4.75
82 83 8.836268 TTTCTACGAAACTCTAAAATAGGCAA 57.164 30.769 0.00 0.00 0.00 4.52
83 84 8.836268 TTCTACGAAACTCTAAAATAGGCAAA 57.164 30.769 0.00 0.00 0.00 3.68
84 85 8.836268 TCTACGAAACTCTAAAATAGGCAAAA 57.164 30.769 0.00 0.00 0.00 2.44
85 86 9.275398 TCTACGAAACTCTAAAATAGGCAAAAA 57.725 29.630 0.00 0.00 0.00 1.94
102 103 2.877043 AAAAACAGAAGCTGGCACTG 57.123 45.000 14.32 14.32 35.51 3.66
103 104 1.035139 AAAACAGAAGCTGGCACTGG 58.965 50.000 17.92 0.00 35.51 4.00
104 105 0.183492 AAACAGAAGCTGGCACTGGA 59.817 50.000 17.92 0.00 35.51 3.86
105 106 0.536006 AACAGAAGCTGGCACTGGAC 60.536 55.000 17.92 0.00 35.51 4.02
106 107 1.673665 CAGAAGCTGGCACTGGACC 60.674 63.158 0.00 0.00 0.00 4.46
107 108 1.845205 AGAAGCTGGCACTGGACCT 60.845 57.895 0.00 0.00 0.00 3.85
108 109 1.376553 GAAGCTGGCACTGGACCTC 60.377 63.158 0.00 0.00 0.00 3.85
109 110 2.811542 GAAGCTGGCACTGGACCTCC 62.812 65.000 0.00 0.00 0.00 4.30
110 111 4.767255 GCTGGCACTGGACCTCCG 62.767 72.222 0.00 0.00 39.43 4.63
120 121 2.395619 CTGGACCTCCGGTTAATAGGT 58.604 52.381 11.41 11.41 46.33 3.08
121 122 2.770232 CTGGACCTCCGGTTAATAGGTT 59.230 50.000 12.72 0.00 43.69 3.50
122 123 3.962718 CTGGACCTCCGGTTAATAGGTTA 59.037 47.826 12.72 5.40 43.69 2.85
123 124 3.962718 TGGACCTCCGGTTAATAGGTTAG 59.037 47.826 12.72 0.00 43.69 2.34
124 125 3.963374 GGACCTCCGGTTAATAGGTTAGT 59.037 47.826 12.72 0.00 43.69 2.24
125 126 4.038522 GGACCTCCGGTTAATAGGTTAGTC 59.961 50.000 12.72 0.96 43.69 2.59
126 127 3.963374 ACCTCCGGTTAATAGGTTAGTCC 59.037 47.826 5.96 0.00 40.82 3.85
127 128 3.323115 CCTCCGGTTAATAGGTTAGTCCC 59.677 52.174 0.00 0.00 36.75 4.46
128 129 3.962718 CTCCGGTTAATAGGTTAGTCCCA 59.037 47.826 0.00 0.00 36.75 4.37
129 130 4.360889 TCCGGTTAATAGGTTAGTCCCAA 58.639 43.478 0.00 0.00 36.75 4.12
130 131 4.782156 TCCGGTTAATAGGTTAGTCCCAAA 59.218 41.667 0.00 0.00 36.75 3.28
131 132 5.250313 TCCGGTTAATAGGTTAGTCCCAAAA 59.750 40.000 0.00 0.00 36.75 2.44
132 133 5.945191 CCGGTTAATAGGTTAGTCCCAAAAA 59.055 40.000 0.00 0.00 36.75 1.94
133 134 6.604396 CCGGTTAATAGGTTAGTCCCAAAAAT 59.396 38.462 0.00 0.00 36.75 1.82
134 135 7.774625 CCGGTTAATAGGTTAGTCCCAAAAATA 59.225 37.037 0.00 0.00 36.75 1.40
135 136 9.176460 CGGTTAATAGGTTAGTCCCAAAAATAA 57.824 33.333 0.00 0.00 36.75 1.40
165 166 9.599866 AAAAGAGCATATTAAAGCCCATTAAAC 57.400 29.630 0.00 0.00 0.00 2.01
166 167 7.896383 AGAGCATATTAAAGCCCATTAAACA 57.104 32.000 0.00 0.00 0.00 2.83
167 168 8.482852 AGAGCATATTAAAGCCCATTAAACAT 57.517 30.769 0.00 0.00 0.00 2.71
168 169 8.579863 AGAGCATATTAAAGCCCATTAAACATC 58.420 33.333 0.00 0.00 0.00 3.06
169 170 7.670364 AGCATATTAAAGCCCATTAAACATCC 58.330 34.615 0.00 0.00 0.00 3.51
170 171 7.289782 AGCATATTAAAGCCCATTAAACATCCA 59.710 33.333 0.00 0.00 0.00 3.41
171 172 7.930865 GCATATTAAAGCCCATTAAACATCCAA 59.069 33.333 0.00 0.00 0.00 3.53
172 173 9.829507 CATATTAAAGCCCATTAAACATCCAAA 57.170 29.630 0.00 0.00 0.00 3.28
174 175 7.971183 TTAAAGCCCATTAAACATCCAAAAC 57.029 32.000 0.00 0.00 0.00 2.43
175 176 5.559148 AAGCCCATTAAACATCCAAAACA 57.441 34.783 0.00 0.00 0.00 2.83
176 177 5.151297 AGCCCATTAAACATCCAAAACAG 57.849 39.130 0.00 0.00 0.00 3.16
177 178 4.837860 AGCCCATTAAACATCCAAAACAGA 59.162 37.500 0.00 0.00 0.00 3.41
178 179 5.484998 AGCCCATTAAACATCCAAAACAGAT 59.515 36.000 0.00 0.00 0.00 2.90
179 180 6.667414 AGCCCATTAAACATCCAAAACAGATA 59.333 34.615 0.00 0.00 0.00 1.98
180 181 7.180051 AGCCCATTAAACATCCAAAACAGATAA 59.820 33.333 0.00 0.00 0.00 1.75
181 182 7.986889 GCCCATTAAACATCCAAAACAGATAAT 59.013 33.333 0.00 0.00 0.00 1.28
233 234 1.009335 CGTTGGAGACGTGTCACGA 60.009 57.895 30.95 5.97 46.05 4.35
263 264 1.605058 GCGTCCCTTCTCCTGCTACA 61.605 60.000 0.00 0.00 0.00 2.74
264 265 0.457851 CGTCCCTTCTCCTGCTACAG 59.542 60.000 0.00 0.00 0.00 2.74
296 299 4.715523 GCCCACACGCTGGCCTTA 62.716 66.667 3.32 0.00 41.97 2.69
306 309 1.522092 CTGGCCTTAGTGGATGCGA 59.478 57.895 3.32 0.00 38.35 5.10
395 429 1.819632 GCGACCGAGAATGGGCAAT 60.820 57.895 0.00 0.00 37.58 3.56
402 436 4.573950 GAATGGGCAATGGCGGCG 62.574 66.667 0.51 0.51 42.47 6.46
427 461 0.771127 TGGGAAGAGTGTGAAAGGGG 59.229 55.000 0.00 0.00 0.00 4.79
429 463 1.423921 GGGAAGAGTGTGAAAGGGGAA 59.576 52.381 0.00 0.00 0.00 3.97
446 480 1.745653 GGAAGAGGGAAAGAAATGCCG 59.254 52.381 0.00 0.00 35.66 5.69
484 518 3.003173 CCAGGCGGAGGACAAGGA 61.003 66.667 0.00 0.00 0.00 3.36
488 522 2.342648 GCGGAGGACAAGGACGTT 59.657 61.111 0.00 0.00 0.00 3.99
539 573 2.799978 GCAAAACCGACTCAAATTTGGG 59.200 45.455 16.69 16.69 32.91 4.12
542 576 1.534729 ACCGACTCAAATTTGGGCTC 58.465 50.000 18.16 12.94 29.59 4.70
561 595 4.708386 AAATGGGTCGCGGCGGAA 62.708 61.111 23.46 0.03 0.00 4.30
563 597 4.708386 ATGGGTCGCGGCGGAAAA 62.708 61.111 23.46 6.87 0.00 2.29
591 630 3.332409 CCCGTTCGTTTGCGTCGT 61.332 61.111 0.00 0.00 39.49 4.34
595 634 2.053811 TTCGTTTGCGTCGTTGCG 60.054 55.556 0.00 0.00 39.49 4.85
617 656 1.593265 GGCCGGACCGTCTTTTCTA 59.407 57.895 13.94 0.00 0.00 2.10
619 658 1.406477 GGCCGGACCGTCTTTTCTATT 60.406 52.381 13.94 0.00 0.00 1.73
622 661 2.416431 CCGGACCGTCTTTTCTATTCGT 60.416 50.000 13.94 0.00 0.00 3.85
625 664 4.263911 CGGACCGTCTTTTCTATTCGTAAC 59.736 45.833 5.48 0.00 0.00 2.50
634 673 9.247562 GTCTTTTCTATTCGTAACGATTCAAAC 57.752 33.333 0.00 0.00 35.23 2.93
636 675 7.565450 TTTCTATTCGTAACGATTCAAACGA 57.435 32.000 0.00 0.00 42.12 3.85
637 676 6.785633 TCTATTCGTAACGATTCAAACGAG 57.214 37.500 0.00 0.00 44.24 4.18
639 678 4.618338 TTCGTAACGATTCAAACGAGTG 57.382 40.909 0.00 0.00 44.24 3.51
640 679 3.631144 TCGTAACGATTCAAACGAGTGT 58.369 40.909 0.00 0.00 39.25 3.55
641 680 3.422876 TCGTAACGATTCAAACGAGTGTG 59.577 43.478 0.00 0.00 39.25 3.82
642 681 3.421312 CGTAACGATTCAAACGAGTGTGG 60.421 47.826 0.00 0.00 37.53 4.17
648 687 1.155424 TCAAACGAGTGTGGCCGAAC 61.155 55.000 0.00 0.00 0.00 3.95
649 688 1.890510 AAACGAGTGTGGCCGAACC 60.891 57.895 0.00 0.00 39.84 3.62
668 707 1.047002 CAAATGGGTTGCCACCTTGA 58.953 50.000 6.95 0.00 43.65 3.02
786 833 1.229336 ATCCTATCCTGGAGGCCGG 60.229 63.158 1.52 0.00 39.78 6.13
1003 1050 4.129148 CTAGCCCCAACCCAGCCC 62.129 72.222 0.00 0.00 0.00 5.19
1612 3805 6.160664 CAAATATTGCTGTTCAAAGGCAAG 57.839 37.500 0.00 0.00 46.67 4.01
1623 3816 1.115326 AAAGGCAAGCAACCTGGTCC 61.115 55.000 0.00 0.00 37.67 4.46
1632 3825 1.892474 GCAACCTGGTCCAATTTAGCA 59.108 47.619 0.00 0.00 0.00 3.49
1740 4108 0.985490 AAGCCAAGCTAGAGGGGGAG 60.985 60.000 0.00 0.00 38.25 4.30
1860 4349 2.711542 CATGAGGTTTTAGCTTCCGGT 58.288 47.619 0.00 0.00 0.00 5.28
1881 4370 6.226787 CGGTCCAATTGAAGATCTTATAGCT 58.773 40.000 8.25 0.00 0.00 3.32
2007 4638 4.085009 AGGAAGAAGCCCTTTCAAGATTG 58.915 43.478 0.00 0.00 38.31 2.67
2148 8312 0.620700 AGGGGCCAGAATTACTCCGT 60.621 55.000 4.39 0.00 0.00 4.69
2168 8332 2.733218 TGCGTCTGACGGCGAAAG 60.733 61.111 28.92 10.79 42.82 2.62
2355 8679 5.763204 GGATCAAACAAACTCCAGACAGTTA 59.237 40.000 0.00 0.00 35.45 2.24
2845 11138 1.154073 GGTCTACCGTCGTCACAGC 60.154 63.158 0.00 0.00 0.00 4.40
2906 11199 2.678934 CAGCCCAATGCCTGCAGT 60.679 61.111 13.81 0.00 42.71 4.40
2956 11249 3.851458 ATGATGATCCAAGCAGTGCTA 57.149 42.857 20.09 2.67 38.25 3.49
2964 11257 4.079980 TCCAAGCAGTGCTACAAACTTA 57.920 40.909 20.09 0.00 38.25 2.24
3137 11430 2.224426 TGGAACATTAGGCTTCACGTGT 60.224 45.455 16.51 0.00 0.00 4.49
3195 11488 4.298009 CTGAAGTGCAGCCCAGAG 57.702 61.111 3.76 0.00 37.90 3.35
3196 11489 1.376942 CTGAAGTGCAGCCCAGAGG 60.377 63.158 3.76 0.00 37.90 3.69
3197 11490 2.121992 CTGAAGTGCAGCCCAGAGGT 62.122 60.000 3.76 0.00 37.90 3.85
3198 11491 1.073897 GAAGTGCAGCCCAGAGGTT 59.926 57.895 0.00 0.00 34.57 3.50
3199 11492 0.957888 GAAGTGCAGCCCAGAGGTTC 60.958 60.000 0.00 0.00 34.57 3.62
3224 11517 2.654863 GGATTATGTCCAACTGTGGGG 58.345 52.381 0.33 0.00 46.96 4.96
3233 11526 0.392461 CAACTGTGGGGACATACGGG 60.392 60.000 0.00 0.00 46.14 5.28
3235 11528 1.993391 CTGTGGGGACATACGGGGT 60.993 63.158 0.00 0.00 46.14 4.95
3236 11529 1.539372 TGTGGGGACATACGGGGTT 60.539 57.895 0.00 0.00 46.14 4.11
3237 11530 1.078001 GTGGGGACATACGGGGTTG 60.078 63.158 0.00 0.00 46.14 3.77
3251 11544 2.488153 CGGGGTTGACTCTTTGGAATTC 59.512 50.000 0.00 0.00 0.00 2.17
3263 11556 6.323739 ACTCTTTGGAATTCTTTTGCTGGTTA 59.676 34.615 5.23 0.00 0.00 2.85
3283 11576 1.665599 GTTGCATGCCAGTTGCCAC 60.666 57.895 16.68 0.00 39.39 5.01
3487 11786 3.554934 TCAAGTGCCTGTTTTGATGTCT 58.445 40.909 0.00 0.00 0.00 3.41
3537 11836 8.607459 GTGTTGTGTGATTCTTCCATATCTTAG 58.393 37.037 0.00 0.00 0.00 2.18
3539 11838 6.830912 TGTGTGATTCTTCCATATCTTAGGG 58.169 40.000 0.00 0.00 0.00 3.53
3552 11851 2.320781 TCTTAGGGCTGTCAGGCTATC 58.679 52.381 24.15 9.41 41.09 2.08
3580 11881 4.761739 TGTGATGGACTGAGAAAATGGTTC 59.238 41.667 0.00 0.00 0.00 3.62
3614 11915 1.273098 GGAACTCTGGTACTCCCTCCA 60.273 57.143 0.00 0.00 0.00 3.86
3618 11919 2.316372 ACTCTGGTACTCCCTCCAATCT 59.684 50.000 0.00 0.00 33.06 2.40
3619 11920 2.697751 CTCTGGTACTCCCTCCAATCTG 59.302 54.545 0.00 0.00 33.06 2.90
3677 11978 8.493787 AGATAATAGTCCCTCCGTAAAGAAAT 57.506 34.615 0.00 0.00 0.00 2.17
3685 11986 7.498239 AGTCCCTCCGTAAAGAAATATAAAAGC 59.502 37.037 0.00 0.00 0.00 3.51
3688 11989 7.201670 CCCTCCGTAAAGAAATATAAAAGCGTT 60.202 37.037 0.00 0.00 0.00 4.84
3689 11990 8.179615 CCTCCGTAAAGAAATATAAAAGCGTTT 58.820 33.333 2.53 2.53 0.00 3.60
3755 12056 5.983540 AGAGGGAGTGAATTCAACAGTATC 58.016 41.667 10.35 4.88 0.00 2.24
3790 12092 6.608002 ACTGGTTGGGTTTACAAGTCAATTTA 59.392 34.615 0.00 0.00 0.00 1.40
3856 12159 9.097257 CATATGTTTTGTTATCCAAATTGACCC 57.903 33.333 0.00 0.00 42.45 4.46
3859 12162 5.379732 TTTGTTATCCAAATTGACCCGAC 57.620 39.130 0.00 0.00 38.12 4.79
3861 12164 5.423704 TGTTATCCAAATTGACCCGACTA 57.576 39.130 0.00 0.00 0.00 2.59
3880 12183 7.426410 CCGACTAGCAGAGTATAAGAAAATCA 58.574 38.462 0.00 0.00 39.06 2.57
3888 12191 7.440856 GCAGAGTATAAGAAAATCAAGAGAGGG 59.559 40.741 0.00 0.00 0.00 4.30
3921 12224 3.010420 CGGCTCGATGATCCTACATCTA 58.990 50.000 0.00 0.00 42.86 1.98
3922 12225 3.181505 CGGCTCGATGATCCTACATCTAC 60.182 52.174 0.00 0.00 42.86 2.59
3923 12226 3.181505 GGCTCGATGATCCTACATCTACG 60.182 52.174 0.00 0.00 42.86 3.51
3924 12227 3.437395 GCTCGATGATCCTACATCTACGT 59.563 47.826 0.00 0.00 42.86 3.57
3926 12229 5.121925 GCTCGATGATCCTACATCTACGTAA 59.878 44.000 0.00 0.00 42.86 3.18
3927 12230 6.673556 GCTCGATGATCCTACATCTACGTAAG 60.674 46.154 0.00 0.00 42.86 2.34
3928 12231 5.121925 TCGATGATCCTACATCTACGTAAGC 59.878 44.000 0.00 0.00 42.86 3.09
3930 12233 6.348622 CGATGATCCTACATCTACGTAAGCTT 60.349 42.308 3.48 3.48 42.86 3.74
3931 12234 6.073327 TGATCCTACATCTACGTAAGCTTG 57.927 41.667 9.86 0.00 45.62 4.01
3933 12236 5.496133 TCCTACATCTACGTAAGCTTGTC 57.504 43.478 9.86 1.13 45.62 3.18
3934 12237 4.034858 TCCTACATCTACGTAAGCTTGTCG 59.965 45.833 19.16 19.16 45.62 4.35
3935 12238 2.527100 ACATCTACGTAAGCTTGTCGC 58.473 47.619 20.18 4.50 45.62 5.19
3936 12239 1.513178 CATCTACGTAAGCTTGTCGCG 59.487 52.381 20.18 15.68 45.59 5.87
3938 12241 1.740043 CTACGTAAGCTTGTCGCGGC 61.740 60.000 20.18 2.29 45.59 6.53
3939 12242 2.203972 TACGTAAGCTTGTCGCGGCT 62.204 55.000 13.81 7.08 45.59 5.52
3940 12243 2.789203 CGTAAGCTTGTCGCGGCTC 61.789 63.158 13.81 0.54 45.59 4.70
3941 12244 2.506217 TAAGCTTGTCGCGGCTCG 60.506 61.111 13.81 3.52 45.59 5.03
3942 12245 2.985117 TAAGCTTGTCGCGGCTCGA 61.985 57.895 13.81 0.00 46.29 4.04
3952 12255 1.605232 TCGCGGCTCGATAATCTTACA 59.395 47.619 6.13 0.00 43.16 2.41
3954 12257 2.594654 CGCGGCTCGATAATCTTACATC 59.405 50.000 0.00 0.00 41.67 3.06
3955 12258 3.670895 CGCGGCTCGATAATCTTACATCT 60.671 47.826 0.00 0.00 41.67 2.90
3956 12259 4.436986 CGCGGCTCGATAATCTTACATCTA 60.437 45.833 0.00 0.00 41.67 1.98
3957 12260 4.794246 GCGGCTCGATAATCTTACATCTAC 59.206 45.833 0.00 0.00 0.00 2.59
3958 12261 5.022653 CGGCTCGATAATCTTACATCTACG 58.977 45.833 0.00 0.00 0.00 3.51
3959 12262 5.390673 CGGCTCGATAATCTTACATCTACGT 60.391 44.000 0.00 0.00 0.00 3.57
3960 12263 6.183360 CGGCTCGATAATCTTACATCTACGTA 60.183 42.308 0.00 0.00 0.00 3.57
3961 12264 7.524912 GGCTCGATAATCTTACATCTACGTAA 58.475 38.462 0.00 0.00 0.00 3.18
3962 12265 7.693120 GGCTCGATAATCTTACATCTACGTAAG 59.307 40.741 0.00 4.78 46.45 2.34
3976 12481 8.738106 ACATCTACGTAAGCTTACTTAAACTCT 58.262 33.333 29.00 8.65 40.04 3.24
3980 12485 9.500864 CTACGTAAGCTTACTTAAACTCTTAGG 57.499 37.037 29.00 14.18 40.04 2.69
3995 12500 7.997773 AACTCTTAGGTAAATTTCCTGAACC 57.002 36.000 15.42 8.65 36.60 3.62
4003 12508 5.183331 GGTAAATTTCCTGAACCAACTCTCC 59.817 44.000 0.00 0.00 0.00 3.71
4005 12510 3.492102 TTTCCTGAACCAACTCTCCTG 57.508 47.619 0.00 0.00 0.00 3.86
4031 15482 0.904394 GATTTTCAAGGGGGCTGCCA 60.904 55.000 22.05 0.00 0.00 4.92
4092 15552 1.461091 TTCCCGTGTGCTTCTCTCGT 61.461 55.000 0.00 0.00 0.00 4.18
4118 15578 4.760047 CCCGGGCTGTCCTGTTCG 62.760 72.222 8.08 0.00 37.01 3.95
4214 15682 9.776158 AAATTAAATAAATATCGCGTTGTGTGA 57.224 25.926 5.77 0.00 42.30 3.58
4215 15683 8.762149 ATTAAATAAATATCGCGTTGTGTGAC 57.238 30.769 5.77 0.00 40.56 3.67
4217 15685 3.722555 AAATATCGCGTTGTGTGACTG 57.277 42.857 5.77 0.00 40.56 3.51
4218 15686 0.999406 ATATCGCGTTGTGTGACTGC 59.001 50.000 5.77 0.00 40.56 4.40
4220 15688 1.560004 ATCGCGTTGTGTGACTGCTG 61.560 55.000 5.77 0.00 40.56 4.41
4258 18039 3.474034 GACTGCGAGCTGACGTGC 61.474 66.667 8.91 0.00 35.59 5.34
4260 18041 2.736236 CTGCGAGCTGACGTGCTT 60.736 61.111 1.52 0.00 44.17 3.91
4270 18051 0.108992 TGACGTGCTTGATCGGTACC 60.109 55.000 0.16 0.16 0.00 3.34
4303 18085 8.572855 AAAAATGGAGTAGGATTTCAGAAGAG 57.427 34.615 0.00 0.00 0.00 2.85
4304 18086 4.744795 TGGAGTAGGATTTCAGAAGAGC 57.255 45.455 0.00 0.00 0.00 4.09
4305 18087 4.096681 TGGAGTAGGATTTCAGAAGAGCA 58.903 43.478 0.00 0.00 0.00 4.26
4306 18088 4.718774 TGGAGTAGGATTTCAGAAGAGCAT 59.281 41.667 0.00 0.00 0.00 3.79
4307 18089 5.190528 TGGAGTAGGATTTCAGAAGAGCATT 59.809 40.000 0.00 0.00 0.00 3.56
4308 18090 6.118852 GGAGTAGGATTTCAGAAGAGCATTT 58.881 40.000 0.00 0.00 0.00 2.32
4309 18091 6.259829 GGAGTAGGATTTCAGAAGAGCATTTC 59.740 42.308 0.00 0.00 0.00 2.17
4310 18092 6.956497 AGTAGGATTTCAGAAGAGCATTTCT 58.044 36.000 0.00 0.00 37.90 2.52
4311 18093 8.083828 AGTAGGATTTCAGAAGAGCATTTCTA 57.916 34.615 2.84 0.00 35.70 2.10
4312 18094 8.713036 AGTAGGATTTCAGAAGAGCATTTCTAT 58.287 33.333 2.84 0.00 35.70 1.98
4313 18095 8.987890 GTAGGATTTCAGAAGAGCATTTCTATC 58.012 37.037 2.84 3.66 35.70 2.08
4314 18096 7.571919 AGGATTTCAGAAGAGCATTTCTATCA 58.428 34.615 2.84 0.00 35.70 2.15
4315 18097 7.716123 AGGATTTCAGAAGAGCATTTCTATCAG 59.284 37.037 2.84 0.00 35.70 2.90
4316 18098 7.714377 GGATTTCAGAAGAGCATTTCTATCAGA 59.286 37.037 2.84 0.00 35.70 3.27
4317 18099 7.840342 TTTCAGAAGAGCATTTCTATCAGAC 57.160 36.000 2.84 0.00 35.70 3.51
4318 18100 5.911752 TCAGAAGAGCATTTCTATCAGACC 58.088 41.667 2.84 0.00 35.70 3.85
4319 18101 5.055812 CAGAAGAGCATTTCTATCAGACCC 58.944 45.833 2.84 0.00 35.70 4.46
4320 18102 4.102367 AGAAGAGCATTTCTATCAGACCCC 59.898 45.833 1.32 0.00 35.70 4.95
4321 18103 3.663198 AGAGCATTTCTATCAGACCCCT 58.337 45.455 0.00 0.00 33.23 4.79
4322 18104 4.043596 AGAGCATTTCTATCAGACCCCTT 58.956 43.478 0.00 0.00 33.23 3.95
4323 18105 5.219739 AGAGCATTTCTATCAGACCCCTTA 58.780 41.667 0.00 0.00 33.23 2.69
4324 18106 5.306678 AGAGCATTTCTATCAGACCCCTTAG 59.693 44.000 0.00 0.00 33.23 2.18
4325 18107 5.219739 AGCATTTCTATCAGACCCCTTAGA 58.780 41.667 0.00 0.00 0.00 2.10
4326 18108 5.306678 AGCATTTCTATCAGACCCCTTAGAG 59.693 44.000 0.00 0.00 0.00 2.43
4327 18109 5.546526 CATTTCTATCAGACCCCTTAGAGC 58.453 45.833 0.00 0.00 0.00 4.09
4328 18110 3.973472 TCTATCAGACCCCTTAGAGCA 57.027 47.619 0.00 0.00 0.00 4.26
4329 18111 4.477536 TCTATCAGACCCCTTAGAGCAT 57.522 45.455 0.00 0.00 0.00 3.79
4330 18112 4.411927 TCTATCAGACCCCTTAGAGCATC 58.588 47.826 0.00 0.00 0.00 3.91
4343 18125 1.272781 GAGCATCTTCACTCGTTCGG 58.727 55.000 0.00 0.00 0.00 4.30
4344 18126 0.737715 AGCATCTTCACTCGTTCGGC 60.738 55.000 0.00 0.00 0.00 5.54
4345 18127 1.696832 GCATCTTCACTCGTTCGGCC 61.697 60.000 0.00 0.00 0.00 6.13
4346 18128 1.084370 CATCTTCACTCGTTCGGCCC 61.084 60.000 0.00 0.00 0.00 5.80
4347 18129 2.240162 ATCTTCACTCGTTCGGCCCC 62.240 60.000 0.00 0.00 0.00 5.80
4348 18130 3.234630 CTTCACTCGTTCGGCCCCA 62.235 63.158 0.00 0.00 0.00 4.96
4349 18131 3.234630 TTCACTCGTTCGGCCCCAG 62.235 63.158 0.00 0.00 0.00 4.45
4350 18132 4.760047 CACTCGTTCGGCCCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
4355 18137 4.295199 GTTCGGCCCCAGGGGTTT 62.295 66.667 27.04 0.00 46.51 3.27
4356 18138 4.293671 TTCGGCCCCAGGGGTTTG 62.294 66.667 27.04 15.80 46.51 2.93
4358 18140 4.293671 CGGCCCCAGGGGTTTGAA 62.294 66.667 27.04 0.00 46.51 2.69
4359 18141 2.202899 GGCCCCAGGGGTTTGAAA 59.797 61.111 27.04 0.00 46.51 2.69
4360 18142 1.229496 GGCCCCAGGGGTTTGAAAT 60.229 57.895 27.04 0.00 46.51 2.17
4361 18143 0.041982 GGCCCCAGGGGTTTGAAATA 59.958 55.000 27.04 0.00 46.51 1.40
4362 18144 1.485124 GCCCCAGGGGTTTGAAATAG 58.515 55.000 27.04 0.00 46.51 1.73
4363 18145 1.485124 CCCCAGGGGTTTGAAATAGC 58.515 55.000 18.09 0.00 38.25 2.97
4364 18146 1.272985 CCCCAGGGGTTTGAAATAGCA 60.273 52.381 18.09 0.00 38.25 3.49
4365 18147 1.824852 CCCAGGGGTTTGAAATAGCAC 59.175 52.381 0.00 0.00 0.00 4.40
4366 18148 1.824852 CCAGGGGTTTGAAATAGCACC 59.175 52.381 0.00 0.00 0.00 5.01
4367 18149 1.472480 CAGGGGTTTGAAATAGCACCG 59.528 52.381 0.00 0.00 0.00 4.94
4368 18150 0.172578 GGGGTTTGAAATAGCACCGC 59.827 55.000 0.00 0.00 35.35 5.68
4369 18151 1.173913 GGGTTTGAAATAGCACCGCT 58.826 50.000 0.00 0.00 43.41 5.52
4370 18152 1.544246 GGGTTTGAAATAGCACCGCTT 59.456 47.619 0.00 0.00 40.44 4.68
4371 18153 2.595386 GGTTTGAAATAGCACCGCTTG 58.405 47.619 0.00 0.00 40.44 4.01
4372 18154 2.595386 GTTTGAAATAGCACCGCTTGG 58.405 47.619 0.00 0.00 40.44 3.61
4373 18155 1.173043 TTGAAATAGCACCGCTTGGG 58.827 50.000 0.00 0.00 40.44 4.12
4374 18156 0.679640 TGAAATAGCACCGCTTGGGG 60.680 55.000 1.99 1.99 40.44 4.96
4375 18157 1.379843 AAATAGCACCGCTTGGGGG 60.380 57.895 8.56 2.83 44.66 5.40
4388 18170 4.344865 GGGGGTGAGCCAGCGAAA 62.345 66.667 1.97 0.00 36.17 3.46
4389 18171 2.282180 GGGGTGAGCCAGCGAAAA 60.282 61.111 1.97 0.00 36.17 2.29
4390 18172 1.901464 GGGGTGAGCCAGCGAAAAA 60.901 57.895 1.97 0.00 36.17 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.540515 TCGCGATGATCTTTCTTGGAC 58.459 47.619 3.71 0.00 0.00 4.02
1 2 2.959507 TCGCGATGATCTTTCTTGGA 57.040 45.000 3.71 0.00 0.00 3.53
2 3 3.190079 TCTTCGCGATGATCTTTCTTGG 58.810 45.455 19.57 0.00 0.00 3.61
3 4 5.401033 AATCTTCGCGATGATCTTTCTTG 57.599 39.130 30.40 3.52 31.20 3.02
4 5 5.582269 TGAAATCTTCGCGATGATCTTTCTT 59.418 36.000 30.44 23.79 31.20 2.52
5 6 5.111989 TGAAATCTTCGCGATGATCTTTCT 58.888 37.500 30.44 19.15 31.20 2.52
6 7 5.395325 TGAAATCTTCGCGATGATCTTTC 57.605 39.130 30.40 28.67 31.20 2.62
7 8 5.998454 ATGAAATCTTCGCGATGATCTTT 57.002 34.783 30.40 23.97 31.20 2.52
8 9 5.049818 GGAATGAAATCTTCGCGATGATCTT 60.050 40.000 30.40 25.03 31.20 2.40
9 10 4.450419 GGAATGAAATCTTCGCGATGATCT 59.550 41.667 30.40 21.40 31.20 2.75
10 11 4.665142 CGGAATGAAATCTTCGCGATGATC 60.665 45.833 30.40 22.48 31.20 2.92
11 12 3.185188 CGGAATGAAATCTTCGCGATGAT 59.815 43.478 26.53 26.53 31.20 2.45
12 13 2.539688 CGGAATGAAATCTTCGCGATGA 59.460 45.455 24.57 24.57 31.20 2.92
13 14 2.285220 ACGGAATGAAATCTTCGCGATG 59.715 45.455 10.88 13.53 31.20 3.84
14 15 2.550978 ACGGAATGAAATCTTCGCGAT 58.449 42.857 10.88 0.00 0.00 4.58
15 16 2.004583 ACGGAATGAAATCTTCGCGA 57.995 45.000 3.71 3.71 0.00 5.87
16 17 2.806288 AACGGAATGAAATCTTCGCG 57.194 45.000 0.00 0.00 0.00 5.87
17 18 3.119990 TCCAAACGGAATGAAATCTTCGC 60.120 43.478 0.00 0.00 0.00 4.70
18 19 4.154195 AGTCCAAACGGAATGAAATCTTCG 59.846 41.667 0.00 0.00 33.16 3.79
19 20 5.392057 GGAGTCCAAACGGAATGAAATCTTC 60.392 44.000 3.60 0.00 33.16 2.87
20 21 4.459337 GGAGTCCAAACGGAATGAAATCTT 59.541 41.667 3.60 0.00 33.16 2.40
21 22 4.010349 GGAGTCCAAACGGAATGAAATCT 58.990 43.478 3.60 0.00 33.16 2.40
22 23 3.181510 CGGAGTCCAAACGGAATGAAATC 60.182 47.826 10.49 0.00 33.16 2.17
23 24 2.747446 CGGAGTCCAAACGGAATGAAAT 59.253 45.455 10.49 0.00 33.16 2.17
24 25 2.147958 CGGAGTCCAAACGGAATGAAA 58.852 47.619 10.49 0.00 33.16 2.69
25 26 1.071071 ACGGAGTCCAAACGGAATGAA 59.929 47.619 10.49 0.00 29.74 2.57
26 27 0.682852 ACGGAGTCCAAACGGAATGA 59.317 50.000 10.49 0.00 29.74 2.57
27 28 1.519408 AACGGAGTCCAAACGGAATG 58.481 50.000 10.49 0.00 45.00 2.67
28 29 1.877443 CAAACGGAGTCCAAACGGAAT 59.123 47.619 10.49 0.00 45.00 3.01
29 30 1.301423 CAAACGGAGTCCAAACGGAA 58.699 50.000 10.49 0.00 45.00 4.30
30 31 0.533308 CCAAACGGAGTCCAAACGGA 60.533 55.000 10.49 0.00 45.00 4.69
31 32 0.816421 ACCAAACGGAGTCCAAACGG 60.816 55.000 10.49 6.56 45.00 4.44
32 33 1.868469 TACCAAACGGAGTCCAAACG 58.132 50.000 10.49 0.00 45.00 3.60
33 34 3.189910 GGAATACCAAACGGAGTCCAAAC 59.810 47.826 10.49 0.00 36.19 2.93
34 35 3.073356 AGGAATACCAAACGGAGTCCAAA 59.927 43.478 10.49 0.00 38.33 3.28
35 36 2.640826 AGGAATACCAAACGGAGTCCAA 59.359 45.455 10.49 0.00 38.33 3.53
36 37 2.262637 AGGAATACCAAACGGAGTCCA 58.737 47.619 10.49 0.00 38.33 4.02
37 38 3.345508 AAGGAATACCAAACGGAGTCC 57.654 47.619 0.00 0.00 38.33 3.85
38 39 5.001874 AGAAAAGGAATACCAAACGGAGTC 58.998 41.667 0.00 0.00 38.33 3.36
39 40 4.981812 AGAAAAGGAATACCAAACGGAGT 58.018 39.130 0.00 0.00 40.63 3.85
40 41 5.063060 CGTAGAAAAGGAATACCAAACGGAG 59.937 44.000 0.00 0.00 38.94 4.63
41 42 4.931002 CGTAGAAAAGGAATACCAAACGGA 59.069 41.667 0.00 0.00 38.94 4.69
42 43 4.931002 TCGTAGAAAAGGAATACCAAACGG 59.069 41.667 0.00 0.00 38.94 4.44
43 44 6.470557 TTCGTAGAAAAGGAATACCAAACG 57.529 37.500 0.00 0.00 45.90 3.60
44 45 7.868775 AGTTTCGTAGAAAAGGAATACCAAAC 58.131 34.615 0.00 0.00 45.90 2.93
45 46 7.935210 AGAGTTTCGTAGAAAAGGAATACCAAA 59.065 33.333 0.00 0.00 45.90 3.28
46 47 7.447594 AGAGTTTCGTAGAAAAGGAATACCAA 58.552 34.615 0.00 0.00 45.90 3.67
47 48 7.001099 AGAGTTTCGTAGAAAAGGAATACCA 57.999 36.000 0.00 0.00 45.90 3.25
48 49 8.992835 TTAGAGTTTCGTAGAAAAGGAATACC 57.007 34.615 0.00 0.00 45.90 2.73
53 54 9.649167 CCTATTTTAGAGTTTCGTAGAAAAGGA 57.351 33.333 0.00 0.00 45.90 3.36
54 55 8.388853 GCCTATTTTAGAGTTTCGTAGAAAAGG 58.611 37.037 0.00 0.00 45.90 3.11
55 56 8.932791 TGCCTATTTTAGAGTTTCGTAGAAAAG 58.067 33.333 0.00 0.00 45.90 2.27
56 57 8.836268 TGCCTATTTTAGAGTTTCGTAGAAAA 57.164 30.769 0.00 0.00 45.90 2.29
57 58 8.836268 TTGCCTATTTTAGAGTTTCGTAGAAA 57.164 30.769 0.00 0.00 45.90 2.52
58 59 8.836268 TTTGCCTATTTTAGAGTTTCGTAGAA 57.164 30.769 0.00 0.00 45.90 2.10
59 60 8.836268 TTTTGCCTATTTTAGAGTTTCGTAGA 57.164 30.769 0.00 0.00 0.00 2.59
83 84 1.410153 CCAGTGCCAGCTTCTGTTTTT 59.590 47.619 11.92 0.00 0.00 1.94
84 85 1.035139 CCAGTGCCAGCTTCTGTTTT 58.965 50.000 11.92 0.00 0.00 2.43
85 86 0.183492 TCCAGTGCCAGCTTCTGTTT 59.817 50.000 11.92 0.00 0.00 2.83
86 87 0.536006 GTCCAGTGCCAGCTTCTGTT 60.536 55.000 11.92 0.00 0.00 3.16
87 88 1.072159 GTCCAGTGCCAGCTTCTGT 59.928 57.895 11.92 0.00 0.00 3.41
88 89 1.673665 GGTCCAGTGCCAGCTTCTG 60.674 63.158 7.91 7.91 0.00 3.02
89 90 1.835927 GAGGTCCAGTGCCAGCTTCT 61.836 60.000 0.00 0.00 0.00 2.85
90 91 1.376553 GAGGTCCAGTGCCAGCTTC 60.377 63.158 0.00 0.00 0.00 3.86
91 92 2.753029 GAGGTCCAGTGCCAGCTT 59.247 61.111 0.00 0.00 0.00 3.74
92 93 3.325753 GGAGGTCCAGTGCCAGCT 61.326 66.667 0.00 0.00 35.64 4.24
93 94 4.767255 CGGAGGTCCAGTGCCAGC 62.767 72.222 0.00 0.00 35.14 4.85
105 106 4.597404 GGACTAACCTATTAACCGGAGG 57.403 50.000 9.46 6.51 45.59 4.30
106 107 3.962718 TGGGACTAACCTATTAACCGGAG 59.037 47.826 9.46 0.00 38.98 4.63
107 108 3.992999 TGGGACTAACCTATTAACCGGA 58.007 45.455 9.46 0.00 38.98 5.14
108 109 4.758773 TTGGGACTAACCTATTAACCGG 57.241 45.455 0.00 0.00 38.98 5.28
109 110 7.634671 ATTTTTGGGACTAACCTATTAACCG 57.365 36.000 0.00 0.00 38.98 4.44
139 140 9.599866 GTTTAATGGGCTTTAATATGCTCTTTT 57.400 29.630 0.00 0.00 31.14 2.27
140 141 8.757877 TGTTTAATGGGCTTTAATATGCTCTTT 58.242 29.630 0.00 0.00 32.88 2.52
141 142 8.305046 TGTTTAATGGGCTTTAATATGCTCTT 57.695 30.769 0.00 0.00 0.00 2.85
142 143 7.896383 TGTTTAATGGGCTTTAATATGCTCT 57.104 32.000 0.00 0.00 0.00 4.09
143 144 7.814587 GGATGTTTAATGGGCTTTAATATGCTC 59.185 37.037 0.00 0.00 0.00 4.26
144 145 7.289782 TGGATGTTTAATGGGCTTTAATATGCT 59.710 33.333 0.00 0.00 0.00 3.79
145 146 7.441017 TGGATGTTTAATGGGCTTTAATATGC 58.559 34.615 0.00 0.00 0.00 3.14
146 147 9.829507 TTTGGATGTTTAATGGGCTTTAATATG 57.170 29.630 0.00 0.00 0.00 1.78
148 149 9.660180 GTTTTGGATGTTTAATGGGCTTTAATA 57.340 29.630 0.00 0.00 0.00 0.98
149 150 8.160106 TGTTTTGGATGTTTAATGGGCTTTAAT 58.840 29.630 0.00 0.00 0.00 1.40
150 151 7.509546 TGTTTTGGATGTTTAATGGGCTTTAA 58.490 30.769 0.00 0.00 0.00 1.52
151 152 7.015682 TCTGTTTTGGATGTTTAATGGGCTTTA 59.984 33.333 0.00 0.00 0.00 1.85
152 153 5.934781 TGTTTTGGATGTTTAATGGGCTTT 58.065 33.333 0.00 0.00 0.00 3.51
153 154 5.306678 TCTGTTTTGGATGTTTAATGGGCTT 59.693 36.000 0.00 0.00 0.00 4.35
154 155 4.837860 TCTGTTTTGGATGTTTAATGGGCT 59.162 37.500 0.00 0.00 0.00 5.19
155 156 5.146010 TCTGTTTTGGATGTTTAATGGGC 57.854 39.130 0.00 0.00 0.00 5.36
199 200 9.027129 CGTCTCCAACGTATCTATAATTTTTGA 57.973 33.333 0.00 0.00 46.42 2.69
216 217 0.938168 GGTCGTGACACGTCTCCAAC 60.938 60.000 26.01 15.82 43.14 3.77
217 218 1.361271 GGTCGTGACACGTCTCCAA 59.639 57.895 26.01 4.26 43.14 3.53
218 219 2.558286 GGGTCGTGACACGTCTCCA 61.558 63.158 26.01 5.03 43.14 3.86
219 220 1.803366 AAGGGTCGTGACACGTCTCC 61.803 60.000 26.01 23.33 43.14 3.71
220 221 0.663568 CAAGGGTCGTGACACGTCTC 60.664 60.000 26.01 20.95 43.14 3.36
221 222 1.362717 CAAGGGTCGTGACACGTCT 59.637 57.895 26.01 18.42 43.14 4.18
222 223 1.663702 CCAAGGGTCGTGACACGTC 60.664 63.158 26.01 20.67 43.14 4.34
223 224 2.420043 CCAAGGGTCGTGACACGT 59.580 61.111 26.01 5.42 43.14 4.49
224 225 3.041940 GCCAAGGGTCGTGACACG 61.042 66.667 21.88 21.88 44.19 4.49
225 226 1.961277 CTGCCAAGGGTCGTGACAC 60.961 63.158 2.00 0.00 34.18 3.67
226 227 2.425592 CTGCCAAGGGTCGTGACA 59.574 61.111 2.00 0.00 0.00 3.58
227 228 2.358737 CCTGCCAAGGGTCGTGAC 60.359 66.667 0.00 0.00 40.27 3.67
228 229 4.329545 GCCTGCCAAGGGTCGTGA 62.330 66.667 0.00 0.00 44.67 4.35
284 287 1.091771 CATCCACTAAGGCCAGCGTG 61.092 60.000 5.01 8.48 37.29 5.34
295 298 1.146041 GCCACCATCGCATCCACTA 59.854 57.895 0.00 0.00 0.00 2.74
296 299 2.124570 GCCACCATCGCATCCACT 60.125 61.111 0.00 0.00 0.00 4.00
402 436 1.633774 TCACACTCTTCCCACCTCTC 58.366 55.000 0.00 0.00 0.00 3.20
427 461 1.133216 GCGGCATTTCTTTCCCTCTTC 59.867 52.381 0.00 0.00 0.00 2.87
429 463 0.329596 AGCGGCATTTCTTTCCCTCT 59.670 50.000 1.45 0.00 0.00 3.69
446 480 2.433318 GCCAGTCGGTGACAGAGC 60.433 66.667 0.00 0.00 34.60 4.09
472 506 2.027625 GCAACGTCCTTGTCCTCCG 61.028 63.158 0.00 0.00 31.73 4.63
527 561 3.056607 CCATTTCGAGCCCAAATTTGAGT 60.057 43.478 19.86 3.27 0.00 3.41
539 573 3.564027 CCGCGACCCATTTCGAGC 61.564 66.667 8.23 0.00 41.78 5.03
595 634 3.837570 AAAGACGGTCCGGCCCAAC 62.838 63.158 15.27 0.00 34.11 3.77
604 643 5.088739 TCGTTACGAATAGAAAAGACGGTC 58.911 41.667 4.50 0.00 31.06 4.79
605 644 5.046910 TCGTTACGAATAGAAAAGACGGT 57.953 39.130 4.50 0.00 31.06 4.83
608 647 9.247562 GTTTGAATCGTTACGAATAGAAAAGAC 57.752 33.333 12.53 0.00 39.99 3.01
610 649 8.157813 TCGTTTGAATCGTTACGAATAGAAAAG 58.842 33.333 12.53 10.55 39.99 2.27
617 656 4.682860 ACACTCGTTTGAATCGTTACGAAT 59.317 37.500 12.53 2.42 41.77 3.34
619 658 3.422876 CACACTCGTTTGAATCGTTACGA 59.577 43.478 10.62 10.62 40.32 3.43
622 661 2.477375 GCCACACTCGTTTGAATCGTTA 59.523 45.455 0.00 0.00 0.00 3.18
625 664 0.165944 GGCCACACTCGTTTGAATCG 59.834 55.000 0.00 0.00 0.00 3.34
661 700 1.541588 GCTAAGCCCAACTTCAAGGTG 59.458 52.381 0.00 0.00 39.97 4.00
662 701 1.425448 AGCTAAGCCCAACTTCAAGGT 59.575 47.619 0.00 0.00 39.97 3.50
664 703 5.189180 AGAATAGCTAAGCCCAACTTCAAG 58.811 41.667 0.00 0.00 39.97 3.02
668 707 6.946009 TGTTTAAGAATAGCTAAGCCCAACTT 59.054 34.615 0.00 0.00 42.76 2.66
786 833 0.978907 TCCCTTTTCAGTCCGGTACC 59.021 55.000 0.16 0.16 0.00 3.34
800 847 1.376649 AGAGGCCAATCTTGTCCCTT 58.623 50.000 5.01 0.00 30.96 3.95
1031 1078 2.127869 CGCTCCTTCTCCCGATCCA 61.128 63.158 0.00 0.00 0.00 3.41
1612 3805 1.892474 TGCTAAATTGGACCAGGTTGC 59.108 47.619 0.00 0.00 0.00 4.17
1623 3816 6.034577 CAGCAGTCATTTCATGTGCTAAATTG 59.965 38.462 4.60 0.00 39.64 2.32
1632 3825 4.142534 CGGAATTCAGCAGTCATTTCATGT 60.143 41.667 7.93 0.00 0.00 3.21
1755 4123 1.203287 TGTCCAGACGAGCTTGAGATG 59.797 52.381 8.31 3.04 0.00 2.90
1860 4349 7.816513 CGATGAGCTATAAGATCTTCAATTGGA 59.183 37.037 12.24 0.00 35.37 3.53
1881 4370 3.146847 ACGATACCTATGCTCACGATGA 58.853 45.455 0.00 0.00 0.00 2.92
2007 4638 1.813513 CACGCCCATTCCTATCATCC 58.186 55.000 0.00 0.00 0.00 3.51
2148 8312 2.132517 TTTCGCCGTCAGACGCACTA 62.133 55.000 18.02 0.98 40.91 2.74
2355 8679 4.321452 CCAAGCACTGTATTTTGCACAGAT 60.321 41.667 9.33 0.00 45.10 2.90
2550 10669 4.805719 GGCATAATTTCTTTGCTAGGTTGC 59.194 41.667 0.00 0.00 36.62 4.17
2845 11138 1.600636 TGCTCTTGGGCAACTTCGG 60.601 57.895 0.00 0.00 39.43 4.30
2906 11199 1.623811 GTTTACCTGACAGAGCTGGGA 59.376 52.381 3.32 0.00 34.19 4.37
2934 11227 4.160642 AGCACTGCTTGGATCATCATAA 57.839 40.909 0.00 0.00 33.89 1.90
2956 11249 8.157476 ACTACTGACTGGATCAAATAAGTTTGT 58.843 33.333 0.00 0.00 44.03 2.83
2964 11257 6.045318 CGATTGACTACTGACTGGATCAAAT 58.955 40.000 0.00 0.00 36.69 2.32
3137 11430 7.589395 CAGTGGTTAAAGCATTACATGTTGTA 58.411 34.615 2.30 0.00 0.00 2.41
3180 11473 0.957888 GAACCTCTGGGCTGCACTTC 60.958 60.000 2.50 0.00 35.63 3.01
3184 11477 1.203441 ATCAGAACCTCTGGGCTGCA 61.203 55.000 0.50 0.00 44.39 4.41
3214 11507 0.392461 CCCGTATGTCCCCACAGTTG 60.392 60.000 0.00 0.00 35.41 3.16
3220 11513 1.229561 TCAACCCCGTATGTCCCCA 60.230 57.895 0.00 0.00 0.00 4.96
3224 11517 3.000727 CAAAGAGTCAACCCCGTATGTC 58.999 50.000 0.00 0.00 0.00 3.06
3230 11523 2.200373 ATTCCAAAGAGTCAACCCCG 57.800 50.000 0.00 0.00 0.00 5.73
3233 11526 5.463392 GCAAAAGAATTCCAAAGAGTCAACC 59.537 40.000 0.65 0.00 0.00 3.77
3235 11528 6.275335 CAGCAAAAGAATTCCAAAGAGTCAA 58.725 36.000 0.65 0.00 0.00 3.18
3236 11529 5.221303 CCAGCAAAAGAATTCCAAAGAGTCA 60.221 40.000 0.65 0.00 0.00 3.41
3237 11530 5.221322 ACCAGCAAAAGAATTCCAAAGAGTC 60.221 40.000 0.65 0.00 0.00 3.36
3251 11544 3.184986 GCATGCAACTTAACCAGCAAAAG 59.815 43.478 14.21 0.00 40.76 2.27
3263 11556 1.401318 TGGCAACTGGCATGCAACTT 61.401 50.000 21.36 0.00 46.12 2.66
3283 11576 0.820226 TGATTCCTCTCACGAGCTGG 59.180 55.000 0.00 0.00 35.90 4.85
3487 11786 2.545532 GCAGCATAACAACTGGCACAAA 60.546 45.455 0.00 0.00 38.70 2.83
3537 11836 2.093537 CTCCGATAGCCTGACAGCCC 62.094 65.000 0.00 0.00 0.00 5.19
3539 11838 0.249238 CACTCCGATAGCCTGACAGC 60.249 60.000 0.00 0.00 0.00 4.40
3552 11851 1.177401 TCTCAGTCCATCACACTCCG 58.823 55.000 0.00 0.00 0.00 4.63
3580 11881 3.823304 CAGAGTTCCTTCCCAAAGAAAGG 59.177 47.826 0.00 0.00 34.14 3.11
3660 11961 7.517893 CGCTTTTATATTTCTTTACGGAGGGAC 60.518 40.741 0.00 0.00 0.00 4.46
3704 12005 9.860898 GTATTAACTACTCCCTTCGTAAAGAAA 57.139 33.333 0.00 0.00 38.57 2.52
3705 12006 9.247861 AGTATTAACTACTCCCTTCGTAAAGAA 57.752 33.333 0.00 0.00 35.73 2.52
3706 12007 8.814038 AGTATTAACTACTCCCTTCGTAAAGA 57.186 34.615 0.00 0.00 35.73 2.52
3708 12009 9.905713 TCTAGTATTAACTACTCCCTTCGTAAA 57.094 33.333 0.00 0.00 41.10 2.01
3709 12010 9.553064 CTCTAGTATTAACTACTCCCTTCGTAA 57.447 37.037 0.00 0.00 41.10 3.18
3710 12011 8.153550 CCTCTAGTATTAACTACTCCCTTCGTA 58.846 40.741 0.00 0.00 41.10 3.43
3711 12012 6.997476 CCTCTAGTATTAACTACTCCCTTCGT 59.003 42.308 0.00 0.00 41.10 3.85
3712 12013 6.430616 CCCTCTAGTATTAACTACTCCCTTCG 59.569 46.154 0.00 0.00 41.10 3.79
3713 12014 7.525165 TCCCTCTAGTATTAACTACTCCCTTC 58.475 42.308 0.00 0.00 41.10 3.46
3714 12015 7.130755 ACTCCCTCTAGTATTAACTACTCCCTT 59.869 40.741 0.00 0.00 41.10 3.95
3715 12016 6.624860 ACTCCCTCTAGTATTAACTACTCCCT 59.375 42.308 0.00 0.00 41.10 4.20
3755 12056 2.034879 CCAACCAGTGGCAGTAGCG 61.035 63.158 9.78 0.00 41.72 4.26
3765 12066 3.655615 TGACTTGTAAACCCAACCAGT 57.344 42.857 0.00 0.00 0.00 4.00
3856 12159 8.858003 TTGATTTTCTTATACTCTGCTAGTCG 57.142 34.615 0.00 0.00 39.80 4.18
3861 12164 8.203485 CCTCTCTTGATTTTCTTATACTCTGCT 58.797 37.037 0.00 0.00 0.00 4.24
3880 12183 1.831652 CGACCCAGCAACCCTCTCTT 61.832 60.000 0.00 0.00 0.00 2.85
3909 12212 6.074544 ACAAGCTTACGTAGATGTAGGATC 57.925 41.667 0.00 0.00 0.00 3.36
3921 12224 3.110178 GCCGCGACAAGCTTACGT 61.110 61.111 20.55 7.91 45.59 3.57
3922 12225 2.789203 GAGCCGCGACAAGCTTACG 61.789 63.158 8.23 17.11 45.59 3.18
3923 12226 2.789203 CGAGCCGCGACAAGCTTAC 61.789 63.158 8.23 0.00 45.59 2.34
3924 12227 2.506217 CGAGCCGCGACAAGCTTA 60.506 61.111 8.23 0.00 45.59 3.09
3933 12236 2.046283 TGTAAGATTATCGAGCCGCG 57.954 50.000 0.00 0.00 42.69 6.46
3934 12237 3.839293 AGATGTAAGATTATCGAGCCGC 58.161 45.455 0.00 0.00 0.00 6.53
3935 12238 5.022653 CGTAGATGTAAGATTATCGAGCCG 58.977 45.833 0.00 0.00 0.00 5.52
3936 12239 5.940595 ACGTAGATGTAAGATTATCGAGCC 58.059 41.667 0.00 0.00 0.00 4.70
3938 12241 8.444715 AGCTTACGTAGATGTAAGATTATCGAG 58.555 37.037 20.80 0.00 45.85 4.04
3939 12242 8.320396 AGCTTACGTAGATGTAAGATTATCGA 57.680 34.615 20.80 0.00 45.85 3.59
3949 12252 9.994432 GAGTTTAAGTAAGCTTACGTAGATGTA 57.006 33.333 26.66 12.43 36.96 2.29
3950 12253 8.738106 AGAGTTTAAGTAAGCTTACGTAGATGT 58.262 33.333 26.66 15.75 36.96 3.06
3954 12257 9.500864 CCTAAGAGTTTAAGTAAGCTTACGTAG 57.499 37.037 26.66 16.11 36.96 3.51
3955 12258 9.014297 ACCTAAGAGTTTAAGTAAGCTTACGTA 57.986 33.333 26.66 24.82 36.96 3.57
3956 12259 7.890515 ACCTAAGAGTTTAAGTAAGCTTACGT 58.109 34.615 26.66 25.78 36.96 3.57
3957 12260 9.846248 TTACCTAAGAGTTTAAGTAAGCTTACG 57.154 33.333 26.66 12.74 36.96 3.18
3976 12481 7.523415 AGAGTTGGTTCAGGAAATTTACCTAA 58.477 34.615 8.23 0.00 35.84 2.69
3979 12484 5.183331 GGAGAGTTGGTTCAGGAAATTTACC 59.817 44.000 0.00 0.00 0.00 2.85
3980 12485 6.004574 AGGAGAGTTGGTTCAGGAAATTTAC 58.995 40.000 0.00 0.00 0.00 2.01
3988 12493 0.322008 GGCAGGAGAGTTGGTTCAGG 60.322 60.000 0.00 0.00 0.00 3.86
3991 12496 1.002011 GGGGCAGGAGAGTTGGTTC 60.002 63.158 0.00 0.00 0.00 3.62
3995 12500 1.277580 ATCAGGGGGCAGGAGAGTTG 61.278 60.000 0.00 0.00 0.00 3.16
4003 12508 1.188863 CCTTGAAAATCAGGGGGCAG 58.811 55.000 0.81 0.00 39.69 4.85
4031 15482 2.146342 CACGACTCAACAAGCTTCCAT 58.854 47.619 0.00 0.00 0.00 3.41
4077 15529 1.060726 GACGACGAGAGAAGCACACG 61.061 60.000 0.00 0.00 0.00 4.49
4118 15578 1.470098 GGATCAGTCACACATTGCACC 59.530 52.381 0.00 0.00 0.00 5.01
4205 15673 1.217001 TAAGCAGCAGTCACACAACG 58.783 50.000 0.00 0.00 0.00 4.10
4207 15675 6.380995 CATTTTATAAGCAGCAGTCACACAA 58.619 36.000 0.00 0.00 0.00 3.33
4210 15678 5.009631 ACCATTTTATAAGCAGCAGTCACA 58.990 37.500 0.00 0.00 0.00 3.58
4211 15679 5.567138 ACCATTTTATAAGCAGCAGTCAC 57.433 39.130 0.00 0.00 0.00 3.67
4212 15680 5.163764 CGAACCATTTTATAAGCAGCAGTCA 60.164 40.000 0.00 0.00 0.00 3.41
4213 15681 5.163754 ACGAACCATTTTATAAGCAGCAGTC 60.164 40.000 0.00 0.00 0.00 3.51
4214 15682 4.700213 ACGAACCATTTTATAAGCAGCAGT 59.300 37.500 0.00 0.00 0.00 4.40
4215 15683 5.235305 ACGAACCATTTTATAAGCAGCAG 57.765 39.130 0.00 0.00 0.00 4.24
4217 15685 4.033587 TCGACGAACCATTTTATAAGCAGC 59.966 41.667 0.00 0.00 0.00 5.25
4218 15686 5.518847 TCTCGACGAACCATTTTATAAGCAG 59.481 40.000 0.00 0.00 0.00 4.24
4220 15688 5.519206 AGTCTCGACGAACCATTTTATAAGC 59.481 40.000 0.00 0.00 36.20 3.09
4258 18039 1.683943 TAGGACCGGTACCGATCAAG 58.316 55.000 35.41 20.02 42.83 3.02
4260 18041 2.142356 TTTAGGACCGGTACCGATCA 57.858 50.000 35.41 10.61 42.83 2.92
4278 18060 7.121907 GCTCTTCTGAAATCCTACTCCATTTTT 59.878 37.037 0.00 0.00 0.00 1.94
4288 18070 8.708378 TGATAGAAATGCTCTTCTGAAATCCTA 58.292 33.333 10.14 0.00 36.34 2.94
4291 18073 8.550376 GTCTGATAGAAATGCTCTTCTGAAATC 58.450 37.037 10.14 6.81 36.34 2.17
4292 18074 7.498570 GGTCTGATAGAAATGCTCTTCTGAAAT 59.501 37.037 10.14 0.00 36.34 2.17
4293 18075 6.820656 GGTCTGATAGAAATGCTCTTCTGAAA 59.179 38.462 10.14 0.00 36.34 2.69
4294 18076 6.344500 GGTCTGATAGAAATGCTCTTCTGAA 58.656 40.000 10.14 0.00 36.34 3.02
4295 18077 5.163364 GGGTCTGATAGAAATGCTCTTCTGA 60.163 44.000 10.14 0.00 36.34 3.27
4296 18078 5.055812 GGGTCTGATAGAAATGCTCTTCTG 58.944 45.833 10.14 0.00 36.34 3.02
4297 18079 4.102367 GGGGTCTGATAGAAATGCTCTTCT 59.898 45.833 6.20 6.20 39.09 2.85
4298 18080 4.102367 AGGGGTCTGATAGAAATGCTCTTC 59.898 45.833 0.00 0.00 35.41 2.87
4299 18081 4.043596 AGGGGTCTGATAGAAATGCTCTT 58.956 43.478 0.00 0.00 35.41 2.85
4300 18082 3.663198 AGGGGTCTGATAGAAATGCTCT 58.337 45.455 0.00 0.00 38.28 4.09
4301 18083 4.429854 AAGGGGTCTGATAGAAATGCTC 57.570 45.455 0.00 0.00 0.00 4.26
4302 18084 5.219739 TCTAAGGGGTCTGATAGAAATGCT 58.780 41.667 0.00 0.00 0.00 3.79
4303 18085 5.546526 CTCTAAGGGGTCTGATAGAAATGC 58.453 45.833 0.00 0.00 0.00 3.56
4304 18086 5.070981 TGCTCTAAGGGGTCTGATAGAAATG 59.929 44.000 0.00 0.00 0.00 2.32
4305 18087 5.219739 TGCTCTAAGGGGTCTGATAGAAAT 58.780 41.667 0.00 0.00 0.00 2.17
4306 18088 4.620723 TGCTCTAAGGGGTCTGATAGAAA 58.379 43.478 0.00 0.00 0.00 2.52
4307 18089 4.265856 TGCTCTAAGGGGTCTGATAGAA 57.734 45.455 0.00 0.00 0.00 2.10
4308 18090 3.973472 TGCTCTAAGGGGTCTGATAGA 57.027 47.619 0.00 0.00 0.00 1.98
4309 18091 4.415596 AGATGCTCTAAGGGGTCTGATAG 58.584 47.826 0.00 0.00 0.00 2.08
4310 18092 4.477536 AGATGCTCTAAGGGGTCTGATA 57.522 45.455 0.00 0.00 0.00 2.15
4311 18093 3.342926 AGATGCTCTAAGGGGTCTGAT 57.657 47.619 0.00 0.00 0.00 2.90
4312 18094 2.856760 AGATGCTCTAAGGGGTCTGA 57.143 50.000 0.00 0.00 0.00 3.27
4313 18095 2.768527 TGAAGATGCTCTAAGGGGTCTG 59.231 50.000 0.00 0.00 0.00 3.51
4314 18096 2.769095 GTGAAGATGCTCTAAGGGGTCT 59.231 50.000 0.00 0.00 0.00 3.85
4315 18097 2.769095 AGTGAAGATGCTCTAAGGGGTC 59.231 50.000 0.00 0.00 0.00 4.46
4316 18098 2.769095 GAGTGAAGATGCTCTAAGGGGT 59.231 50.000 0.00 0.00 0.00 4.95
4317 18099 2.223923 CGAGTGAAGATGCTCTAAGGGG 60.224 54.545 0.00 0.00 0.00 4.79
4318 18100 2.428890 ACGAGTGAAGATGCTCTAAGGG 59.571 50.000 0.00 0.00 0.00 3.95
4319 18101 3.791973 ACGAGTGAAGATGCTCTAAGG 57.208 47.619 0.00 0.00 0.00 2.69
4320 18102 3.788694 CGAACGAGTGAAGATGCTCTAAG 59.211 47.826 0.00 0.00 0.00 2.18
4321 18103 3.427638 CCGAACGAGTGAAGATGCTCTAA 60.428 47.826 0.00 0.00 0.00 2.10
4322 18104 2.097629 CCGAACGAGTGAAGATGCTCTA 59.902 50.000 0.00 0.00 0.00 2.43
4323 18105 1.135257 CCGAACGAGTGAAGATGCTCT 60.135 52.381 0.00 0.00 0.00 4.09
4324 18106 1.272781 CCGAACGAGTGAAGATGCTC 58.727 55.000 0.00 0.00 0.00 4.26
4325 18107 0.737715 GCCGAACGAGTGAAGATGCT 60.738 55.000 0.00 0.00 0.00 3.79
4326 18108 1.696832 GGCCGAACGAGTGAAGATGC 61.697 60.000 0.00 0.00 0.00 3.91
4327 18109 1.084370 GGGCCGAACGAGTGAAGATG 61.084 60.000 0.00 0.00 0.00 2.90
4328 18110 1.218316 GGGCCGAACGAGTGAAGAT 59.782 57.895 0.00 0.00 0.00 2.40
4329 18111 2.654877 GGGCCGAACGAGTGAAGA 59.345 61.111 0.00 0.00 0.00 2.87
4330 18112 2.434359 GGGGCCGAACGAGTGAAG 60.434 66.667 0.00 0.00 0.00 3.02
4331 18113 3.234630 CTGGGGCCGAACGAGTGAA 62.235 63.158 0.00 0.00 0.00 3.18
4332 18114 3.691342 CTGGGGCCGAACGAGTGA 61.691 66.667 0.00 0.00 0.00 3.41
4333 18115 4.760047 CCTGGGGCCGAACGAGTG 62.760 72.222 0.00 0.00 0.00 3.51
4345 18127 1.824852 GTGCTATTTCAAACCCCTGGG 59.175 52.381 5.50 5.50 42.03 4.45
4346 18128 1.824852 GGTGCTATTTCAAACCCCTGG 59.175 52.381 0.00 0.00 0.00 4.45
4347 18129 1.472480 CGGTGCTATTTCAAACCCCTG 59.528 52.381 0.00 0.00 0.00 4.45
4348 18130 1.834188 CGGTGCTATTTCAAACCCCT 58.166 50.000 0.00 0.00 0.00 4.79
4349 18131 0.172578 GCGGTGCTATTTCAAACCCC 59.827 55.000 0.00 0.00 0.00 4.95
4350 18132 1.173913 AGCGGTGCTATTTCAAACCC 58.826 50.000 0.00 0.00 36.99 4.11
4351 18133 2.595386 CAAGCGGTGCTATTTCAAACC 58.405 47.619 0.00 0.00 38.25 3.27
4352 18134 2.595386 CCAAGCGGTGCTATTTCAAAC 58.405 47.619 0.00 0.00 38.25 2.93
4353 18135 1.543802 CCCAAGCGGTGCTATTTCAAA 59.456 47.619 0.00 0.00 38.25 2.69
4354 18136 1.173043 CCCAAGCGGTGCTATTTCAA 58.827 50.000 0.00 0.00 38.25 2.69
4355 18137 0.679640 CCCCAAGCGGTGCTATTTCA 60.680 55.000 0.00 0.00 38.25 2.69
4356 18138 1.384222 CCCCCAAGCGGTGCTATTTC 61.384 60.000 0.00 0.00 38.25 2.17
4357 18139 1.379843 CCCCCAAGCGGTGCTATTT 60.380 57.895 0.00 0.00 38.25 1.40
4358 18140 2.275418 CCCCCAAGCGGTGCTATT 59.725 61.111 0.00 0.00 38.25 1.73
4359 18141 3.015145 ACCCCCAAGCGGTGCTAT 61.015 61.111 0.00 0.00 38.25 2.97
4360 18142 4.028490 CACCCCCAAGCGGTGCTA 62.028 66.667 0.00 0.00 44.10 3.49
4371 18153 3.860930 TTTTCGCTGGCTCACCCCC 62.861 63.158 0.00 0.00 33.59 5.40
4372 18154 1.901464 TTTTTCGCTGGCTCACCCC 60.901 57.895 0.00 0.00 33.59 4.95
4373 18155 3.758172 TTTTTCGCTGGCTCACCC 58.242 55.556 0.00 0.00 33.59 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.