Multiple sequence alignment - TraesCS2D01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G389400 chr2D 100.000 7542 0 0 1 7542 496333175 496340716 0.000000e+00 13928.0
1 TraesCS2D01G389400 chr2D 93.962 2037 95 12 5094 7109 495783682 495785711 0.000000e+00 3055.0
2 TraesCS2D01G389400 chr2D 93.250 1689 58 21 3401 5055 495781921 495783587 0.000000e+00 2436.0
3 TraesCS2D01G389400 chr2D 92.266 1306 77 9 1603 2902 495779738 495781025 0.000000e+00 1831.0
4 TraesCS2D01G389400 chr2D 91.702 470 24 5 1148 1607 495779235 495779699 8.250000e-179 638.0
5 TraesCS2D01G389400 chr2D 83.213 691 69 19 2 652 644101867 644101184 2.340000e-164 590.0
6 TraesCS2D01G389400 chr2D 94.362 337 12 3 3089 3418 495781019 495781355 1.880000e-140 510.0
7 TraesCS2D01G389400 chr2D 84.247 438 43 15 731 1143 495778638 495779074 3.280000e-108 403.0
8 TraesCS2D01G389400 chr2D 91.837 245 11 4 7110 7354 314376889 314377124 4.360000e-87 333.0
9 TraesCS2D01G389400 chr2D 90.763 249 14 4 7106 7354 314378053 314378292 2.620000e-84 324.0
10 TraesCS2D01G389400 chr2A 94.256 2037 91 9 5094 7109 641396273 641398304 0.000000e+00 3090.0
11 TraesCS2D01G389400 chr2A 93.803 2001 78 19 3089 5055 641394190 641396178 0.000000e+00 2966.0
12 TraesCS2D01G389400 chr2A 91.309 886 54 9 2023 2902 641393328 641394196 0.000000e+00 1188.0
13 TraesCS2D01G389400 chr2A 89.667 900 54 22 735 1607 641392040 641392927 0.000000e+00 1110.0
14 TraesCS2D01G389400 chr2A 92.722 371 27 0 1602 1972 641392966 641393336 3.100000e-148 536.0
15 TraesCS2D01G389400 chr2A 91.463 246 12 2 7109 7354 658578835 658578599 5.640000e-86 329.0
16 TraesCS2D01G389400 chr2B 93.438 2042 84 21 5094 7103 583414507 583416530 0.000000e+00 2983.0
17 TraesCS2D01G389400 chr2B 93.831 1994 81 20 3089 5055 583412433 583414411 0.000000e+00 2963.0
18 TraesCS2D01G389400 chr2B 91.336 2043 117 25 889 2902 583410428 583412439 0.000000e+00 2737.0
19 TraesCS2D01G389400 chr2B 87.848 1942 168 21 5200 7109 583159011 583160916 0.000000e+00 2217.0
20 TraesCS2D01G389400 chr2B 87.377 610 60 7 3795 4400 583158121 583158717 0.000000e+00 684.0
21 TraesCS2D01G389400 chr2B 84.302 688 71 24 1 655 644528688 644528005 8.250000e-179 638.0
22 TraesCS2D01G389400 chr2B 81.871 695 66 24 2 649 51954838 51955519 1.440000e-146 531.0
23 TraesCS2D01G389400 chr2B 82.792 616 73 15 918 1507 583155389 583155997 3.120000e-143 520.0
24 TraesCS2D01G389400 chr2B 83.764 542 66 13 2342 2864 583156804 583157342 1.890000e-135 494.0
25 TraesCS2D01G389400 chr2B 85.993 307 23 10 4502 4797 583158714 583159011 2.040000e-80 311.0
26 TraesCS2D01G389400 chr2B 95.000 60 1 1 793 852 583410300 583410357 8.060000e-15 93.5
27 TraesCS2D01G389400 chr2B 97.872 47 1 0 747 793 583410037 583410083 1.740000e-11 82.4
28 TraesCS2D01G389400 chr5D 88.270 682 43 20 1 652 491293783 491294457 0.000000e+00 782.0
29 TraesCS2D01G389400 chr5D 85.196 689 60 17 5 652 446262210 446261523 0.000000e+00 669.0
30 TraesCS2D01G389400 chr5D 83.847 681 77 11 2 652 273066459 273067136 1.080000e-172 617.0
31 TraesCS2D01G389400 chr5D 98.378 185 3 0 2903 3087 236022782 236022598 7.300000e-85 326.0
32 TraesCS2D01G389400 chr4A 84.294 694 66 15 1 652 462199620 462198928 8.250000e-179 638.0
33 TraesCS2D01G389400 chr4A 84.024 338 40 3 2 326 449801097 449800761 5.680000e-81 313.0
34 TraesCS2D01G389400 chr4A 100.000 32 0 0 643 674 621925115 621925146 8.170000e-05 60.2
35 TraesCS2D01G389400 chr4A 100.000 32 0 0 644 675 736839759 736839790 8.170000e-05 60.2
36 TraesCS2D01G389400 chr7D 84.104 692 58 23 2 652 271744953 271744273 8.310000e-174 621.0
37 TraesCS2D01G389400 chr7D 83.475 587 54 11 2 548 136532792 136532209 2.430000e-139 507.0
38 TraesCS2D01G389400 chr7D 91.020 245 13 2 7110 7354 215760770 215761005 9.440000e-84 322.0
39 TraesCS2D01G389400 chr7D 90.361 249 15 3 7106 7354 215762361 215762600 1.220000e-82 318.0
40 TraesCS2D01G389400 chr7D 89.558 249 17 2 7106 7354 215773656 215773895 2.640000e-79 307.0
41 TraesCS2D01G389400 chr1D 83.117 693 71 14 2 652 349711429 349712117 2.340000e-164 590.0
42 TraesCS2D01G389400 chr1D 82.833 699 69 23 2 652 24040156 24040851 5.070000e-161 579.0
43 TraesCS2D01G389400 chr1D 89.371 461 13 3 7109 7542 175833664 175833213 1.430000e-151 547.0
44 TraesCS2D01G389400 chr1D 83.448 580 59 21 102 652 373098888 373099459 8.730000e-139 505.0
45 TraesCS2D01G389400 chr1D 88.235 68 8 0 2275 2342 345726211 345726278 1.740000e-11 82.4
46 TraesCS2D01G389400 chr3B 81.132 689 85 26 2 648 603824020 603824705 1.880000e-140 510.0
47 TraesCS2D01G389400 chr3B 97.872 188 4 0 2900 3087 226085681 226085868 7.300000e-85 326.0
48 TraesCS2D01G389400 chr3B 95.960 198 8 0 2897 3094 627920950 627921147 9.440000e-84 322.0
49 TraesCS2D01G389400 chr3B 100.000 34 0 0 643 676 112455831 112455798 6.320000e-06 63.9
50 TraesCS2D01G389400 chr6D 80.507 631 57 33 2 601 7691966 7691371 2.520000e-114 424.0
51 TraesCS2D01G389400 chr6D 85.329 334 32 7 4 323 461380722 461380392 5.640000e-86 329.0
52 TraesCS2D01G389400 chr6D 95.918 196 2 3 7350 7542 141210755 141210947 5.680000e-81 313.0
53 TraesCS2D01G389400 chr4B 85.586 333 34 3 2 321 380155787 380156118 3.370000e-88 337.0
54 TraesCS2D01G389400 chr4B 97.354 189 5 0 2899 3087 155731413 155731225 9.440000e-84 322.0
55 TraesCS2D01G389400 chr7B 97.884 189 3 1 2899 3087 168758193 168758380 7.300000e-85 326.0
56 TraesCS2D01G389400 chr7B 92.118 203 12 2 7342 7541 56424248 56424047 4.450000e-72 283.0
57 TraesCS2D01G389400 chr7B 91.667 204 13 2 7342 7542 56414529 56414327 5.760000e-71 279.0
58 TraesCS2D01G389400 chr7B 91.176 204 14 2 7342 7542 56416212 56416010 2.680000e-69 274.0
59 TraesCS2D01G389400 chr7B 91.176 204 14 2 7342 7542 56417895 56417693 2.680000e-69 274.0
60 TraesCS2D01G389400 chr7B 81.009 337 47 6 2 323 726489843 726489509 1.260000e-62 252.0
61 TraesCS2D01G389400 chr7B 88.889 81 9 0 3 83 514075096 514075016 4.820000e-17 100.0
62 TraesCS2D01G389400 chr7B 97.059 34 1 0 643 676 65333398 65333365 2.940000e-04 58.4
63 TraesCS2D01G389400 chr7B 89.130 46 3 1 633 678 87843458 87843501 1.000000e-03 56.5
64 TraesCS2D01G389400 chr4D 98.378 185 3 0 2903 3087 306555990 306555806 7.300000e-85 326.0
65 TraesCS2D01G389400 chr4D 95.960 198 8 0 2897 3094 21753940 21754137 9.440000e-84 322.0
66 TraesCS2D01G389400 chr6B 97.861 187 4 0 2901 3087 289689454 289689640 2.620000e-84 324.0
67 TraesCS2D01G389400 chr6B 91.626 203 14 3 7342 7542 88263123 88263324 2.070000e-70 278.0
68 TraesCS2D01G389400 chr6B 100.000 32 0 0 642 673 6873685 6873654 8.170000e-05 60.2
69 TraesCS2D01G389400 chr5B 97.354 189 5 0 2899 3087 434671354 434671542 9.440000e-84 322.0
70 TraesCS2D01G389400 chr5B 78.507 335 56 8 2 323 7850310 7849979 9.920000e-49 206.0
71 TraesCS2D01G389400 chr5B 77.477 333 58 7 5 323 546978018 546977689 4.650000e-42 183.0
72 TraesCS2D01G389400 chr6A 90.244 246 14 3 7110 7354 17961596 17961832 5.680000e-81 313.0
73 TraesCS2D01G389400 chr6A 97.143 35 0 1 643 676 461865676 461865642 2.940000e-04 58.4
74 TraesCS2D01G389400 chr3A 90.323 248 11 7 7110 7354 574477917 574478154 5.680000e-81 313.0
75 TraesCS2D01G389400 chr3A 81.319 182 31 3 2175 2355 419334046 419333867 2.190000e-30 145.0
76 TraesCS2D01G389400 chr3A 97.222 36 0 1 644 679 10164487 10164453 8.170000e-05 60.2
77 TraesCS2D01G389400 chr7A 92.611 203 11 4 7343 7542 354972876 354972675 9.580000e-74 289.0
78 TraesCS2D01G389400 chr7A 92.857 196 11 3 7349 7542 354963886 354963692 1.600000e-71 281.0
79 TraesCS2D01G389400 chr3D 81.683 202 30 4 2159 2355 313180446 313180645 2.180000e-35 161.0
80 TraesCS2D01G389400 chr1B 92.308 39 3 0 643 681 135930421 135930383 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G389400 chr2D 496333175 496340716 7541 False 13928.000000 13928 100.000000 1 7542 1 chr2D.!!$F1 7541
1 TraesCS2D01G389400 chr2D 495778638 495785711 7073 False 1478.833333 3055 91.631500 731 7109 6 chr2D.!!$F3 6378
2 TraesCS2D01G389400 chr2D 644101184 644101867 683 True 590.000000 590 83.213000 2 652 1 chr2D.!!$R1 650
3 TraesCS2D01G389400 chr2D 314376889 314378292 1403 False 328.500000 333 91.300000 7106 7354 2 chr2D.!!$F2 248
4 TraesCS2D01G389400 chr2A 641392040 641398304 6264 False 1778.000000 3090 92.351400 735 7109 5 chr2A.!!$F1 6374
5 TraesCS2D01G389400 chr2B 583410037 583416530 6493 False 1771.780000 2983 94.295400 747 7103 5 chr2B.!!$F3 6356
6 TraesCS2D01G389400 chr2B 583155389 583160916 5527 False 845.200000 2217 85.554800 918 7109 5 chr2B.!!$F2 6191
7 TraesCS2D01G389400 chr2B 644528005 644528688 683 True 638.000000 638 84.302000 1 655 1 chr2B.!!$R1 654
8 TraesCS2D01G389400 chr2B 51954838 51955519 681 False 531.000000 531 81.871000 2 649 1 chr2B.!!$F1 647
9 TraesCS2D01G389400 chr5D 491293783 491294457 674 False 782.000000 782 88.270000 1 652 1 chr5D.!!$F2 651
10 TraesCS2D01G389400 chr5D 446261523 446262210 687 True 669.000000 669 85.196000 5 652 1 chr5D.!!$R2 647
11 TraesCS2D01G389400 chr5D 273066459 273067136 677 False 617.000000 617 83.847000 2 652 1 chr5D.!!$F1 650
12 TraesCS2D01G389400 chr4A 462198928 462199620 692 True 638.000000 638 84.294000 1 652 1 chr4A.!!$R2 651
13 TraesCS2D01G389400 chr7D 271744273 271744953 680 True 621.000000 621 84.104000 2 652 1 chr7D.!!$R2 650
14 TraesCS2D01G389400 chr7D 136532209 136532792 583 True 507.000000 507 83.475000 2 548 1 chr7D.!!$R1 546
15 TraesCS2D01G389400 chr7D 215760770 215762600 1830 False 320.000000 322 90.690500 7106 7354 2 chr7D.!!$F2 248
16 TraesCS2D01G389400 chr1D 349711429 349712117 688 False 590.000000 590 83.117000 2 652 1 chr1D.!!$F3 650
17 TraesCS2D01G389400 chr1D 24040156 24040851 695 False 579.000000 579 82.833000 2 652 1 chr1D.!!$F1 650
18 TraesCS2D01G389400 chr1D 373098888 373099459 571 False 505.000000 505 83.448000 102 652 1 chr1D.!!$F4 550
19 TraesCS2D01G389400 chr3B 603824020 603824705 685 False 510.000000 510 81.132000 2 648 1 chr3B.!!$F2 646
20 TraesCS2D01G389400 chr6D 7691371 7691966 595 True 424.000000 424 80.507000 2 601 1 chr6D.!!$R1 599
21 TraesCS2D01G389400 chr7B 56414327 56417895 3568 True 275.666667 279 91.339667 7342 7542 3 chr7B.!!$R5 200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 157 0.036875 CAGGGACCTTCTTCCGCTTT 59.963 55.0 0.00 0.0 36.38 3.51 F
657 732 0.172578 GGTTATTTTGCGGGGTCTGC 59.827 55.0 0.00 0.0 0.00 4.26 F
661 736 0.618458 ATTTTGCGGGGTCTGCTAGA 59.382 50.0 0.00 0.0 0.00 2.43 F
1548 2215 0.622665 ATCTCTGCTTCTGGTTGGGG 59.377 55.0 0.00 0.0 0.00 4.96 F
3031 3876 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.0 9.73 0.0 34.30 2.24 F
3755 5296 0.461548 TTGCAGATGACTAGCCTCGG 59.538 55.0 0.00 0.0 0.00 4.63 F
5108 6736 0.042188 CGCCGAATTGCTGTATTCCG 60.042 55.0 0.00 0.0 32.12 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1748 0.110486 GGAAAGCCTTCACCCTGTCA 59.890 55.000 0.00 0.0 32.75 3.58 R
1650 2405 1.133606 TGAAAAAGGGGTGGAGTGGAC 60.134 52.381 0.00 0.0 0.00 4.02 R
1830 2586 1.283321 AGATTCAAGTTGAGGGAGCCC 59.717 52.381 5.56 0.0 0.00 5.19 R
3284 4156 0.249657 CTCGCCCTCATCTAAGCACC 60.250 60.000 0.00 0.0 0.00 5.01 R
4500 6057 1.130561 GCTTGCACGAAATACAGACCC 59.869 52.381 0.00 0.0 0.00 4.46 R
5674 7333 0.033920 ACTGCATTGTCTCGCTCACA 59.966 50.000 0.00 0.0 0.00 3.58 R
7072 8748 0.041238 TGGATGGAAGAGAGGACGGT 59.959 55.000 0.00 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 157 0.036875 CAGGGACCTTCTTCCGCTTT 59.963 55.000 0.00 0.00 36.38 3.51
626 701 1.303317 AGGATTTTCCGCGCCAACT 60.303 52.632 0.00 0.00 42.75 3.16
652 727 0.882474 TTGACGGTTATTTTGCGGGG 59.118 50.000 0.00 0.00 0.00 5.73
653 728 0.250814 TGACGGTTATTTTGCGGGGT 60.251 50.000 0.00 0.00 0.00 4.95
654 729 0.448990 GACGGTTATTTTGCGGGGTC 59.551 55.000 0.00 0.00 0.00 4.46
656 731 0.450184 CGGTTATTTTGCGGGGTCTG 59.550 55.000 0.00 0.00 0.00 3.51
657 732 0.172578 GGTTATTTTGCGGGGTCTGC 59.827 55.000 0.00 0.00 0.00 4.26
658 733 1.173913 GTTATTTTGCGGGGTCTGCT 58.826 50.000 0.30 0.00 0.00 4.24
659 734 2.361789 GTTATTTTGCGGGGTCTGCTA 58.638 47.619 0.30 0.00 0.00 3.49
661 736 0.618458 ATTTTGCGGGGTCTGCTAGA 59.382 50.000 0.00 0.00 0.00 2.43
663 738 0.902984 TTTGCGGGGTCTGCTAGAGA 60.903 55.000 0.00 0.00 0.00 3.10
665 740 1.365633 GCGGGGTCTGCTAGAGATG 59.634 63.158 0.00 0.00 31.63 2.90
666 741 1.365633 CGGGGTCTGCTAGAGATGC 59.634 63.158 0.00 0.00 31.63 3.91
668 743 0.678950 GGGGTCTGCTAGAGATGCTC 59.321 60.000 0.00 0.00 31.63 4.26
670 745 2.489985 GGGGTCTGCTAGAGATGCTCTA 60.490 54.545 0.00 4.30 41.50 2.43
673 748 5.013547 GGGTCTGCTAGAGATGCTCTAATA 58.986 45.833 5.75 0.00 41.74 0.98
674 749 5.656416 GGGTCTGCTAGAGATGCTCTAATAT 59.344 44.000 5.75 0.00 41.74 1.28
675 750 6.831353 GGGTCTGCTAGAGATGCTCTAATATA 59.169 42.308 5.75 0.00 41.74 0.86
677 752 8.744652 GGTCTGCTAGAGATGCTCTAATATAAA 58.255 37.037 5.75 0.00 41.74 1.40
678 753 9.787532 GTCTGCTAGAGATGCTCTAATATAAAG 57.212 37.037 5.75 0.00 41.74 1.85
688 763 6.062095 TGCTCTAATATAAAGCAGGGAAACC 58.938 40.000 3.24 0.00 41.83 3.27
705 780 6.862711 GGAAACCCTATTTCTATTTCGGAG 57.137 41.667 0.00 0.00 31.42 4.63
707 782 7.503549 GGAAACCCTATTTCTATTTCGGAGTA 58.496 38.462 0.00 0.00 31.42 2.59
708 783 7.656542 GGAAACCCTATTTCTATTTCGGAGTAG 59.343 40.741 0.00 0.00 31.42 2.57
709 784 7.672122 AACCCTATTTCTATTTCGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
710 785 8.773033 AACCCTATTTCTATTTCGGAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
711 786 8.406730 ACCCTATTTCTATTTCGGAGTAGTAG 57.593 38.462 0.00 0.00 0.00 2.57
712 787 8.003629 ACCCTATTTCTATTTCGGAGTAGTAGT 58.996 37.037 0.00 0.00 0.00 2.73
713 788 8.513774 CCCTATTTCTATTTCGGAGTAGTAGTC 58.486 40.741 0.00 0.00 0.00 2.59
714 789 9.287373 CCTATTTCTATTTCGGAGTAGTAGTCT 57.713 37.037 4.99 0.00 0.00 3.24
723 798 7.823149 TTCGGAGTAGTAGTCTAAAAATTGC 57.177 36.000 4.99 0.00 0.00 3.56
724 799 6.927416 TCGGAGTAGTAGTCTAAAAATTGCA 58.073 36.000 4.99 0.00 0.00 4.08
726 801 8.038944 TCGGAGTAGTAGTCTAAAAATTGCAAT 58.961 33.333 5.99 5.99 0.00 3.56
728 803 9.989869 GGAGTAGTAGTCTAAAAATTGCAATTC 57.010 33.333 24.28 11.15 0.00 2.17
733 808 8.946085 AGTAGTCTAAAAATTGCAATTCATCGA 58.054 29.630 24.28 15.35 0.00 3.59
812 1104 3.256960 AAGATGGCCGGTGTGGGT 61.257 61.111 1.90 0.00 38.63 4.51
819 1111 1.340211 TGGCCGGTGTGGGTAATAAAG 60.340 52.381 1.90 0.00 38.63 1.85
820 1112 1.385528 GCCGGTGTGGGTAATAAAGG 58.614 55.000 1.90 0.00 38.63 3.11
877 1193 1.112315 AAATGCGGGCTCCACACAAA 61.112 50.000 0.00 0.00 0.00 2.83
880 1196 2.919494 GCGGGCTCCACACAAAAGG 61.919 63.158 0.00 0.00 0.00 3.11
883 1199 0.961753 GGGCTCCACACAAAAGGAAG 59.038 55.000 0.00 0.00 32.57 3.46
903 1231 2.746277 GCAAACCTCCACGGCGAT 60.746 61.111 16.62 0.00 35.61 4.58
952 1294 1.984570 CTTCGAGGGGGAGCTGTCA 60.985 63.158 0.00 0.00 0.00 3.58
992 1334 3.743091 CTCCTTCTCGTCGCTCCGC 62.743 68.421 0.00 0.00 0.00 5.54
993 1335 3.816524 CCTTCTCGTCGCTCCGCT 61.817 66.667 0.00 0.00 0.00 5.52
1013 1355 2.435938 GGCGATGCAACCTCGGAA 60.436 61.111 9.99 0.00 36.65 4.30
1109 1455 0.750249 TATTTGATCCGAGGCAGCGA 59.250 50.000 1.22 0.00 0.00 4.93
1146 1650 5.304357 TGATGACCAGCTTCCGATCTAATTA 59.696 40.000 0.00 0.00 0.00 1.40
1166 1670 0.753479 TTGAGGTTTCTTTGCCCGCA 60.753 50.000 0.00 0.00 0.00 5.69
1194 1698 2.239654 CAGGTGGCAAGGGAAGAAGATA 59.760 50.000 0.00 0.00 0.00 1.98
1205 1709 5.032846 AGGGAAGAAGATATGTCCTCACAA 58.967 41.667 0.00 0.00 35.64 3.33
1244 1748 6.035112 GCTTCTATTTTGATCTCGTCGACTTT 59.965 38.462 14.70 0.00 0.00 2.66
1255 1759 1.537348 CGTCGACTTTGACAGGGTGAA 60.537 52.381 14.70 0.00 38.84 3.18
1269 1773 1.373570 GGTGAAGGCTTTCCAGATCG 58.626 55.000 6.06 0.00 32.09 3.69
1320 1828 1.435256 ACCACCTGCCTTAGTCAACT 58.565 50.000 0.00 0.00 0.00 3.16
1321 1829 2.616524 ACCACCTGCCTTAGTCAACTA 58.383 47.619 0.00 0.00 0.00 2.24
1487 2010 5.523369 AGCAACTTTTTGTGCTGATTAGAC 58.477 37.500 0.00 0.00 34.90 2.59
1488 2011 5.300286 AGCAACTTTTTGTGCTGATTAGACT 59.700 36.000 0.00 0.00 34.90 3.24
1490 2014 5.695851 ACTTTTTGTGCTGATTAGACTGG 57.304 39.130 0.00 0.00 0.00 4.00
1546 2213 1.093159 GCATCTCTGCTTCTGGTTGG 58.907 55.000 0.00 0.00 45.32 3.77
1548 2215 0.622665 ATCTCTGCTTCTGGTTGGGG 59.377 55.000 0.00 0.00 0.00 4.96
1598 2266 1.275856 GCCAGGCCATTTTCATGTGAA 59.724 47.619 5.01 0.00 0.00 3.18
1599 2267 2.932187 GCCAGGCCATTTTCATGTGAAC 60.932 50.000 5.01 0.00 33.13 3.18
1642 2397 4.824479 TGTGGAAATCATGAGTAGCTGA 57.176 40.909 0.09 0.00 0.00 4.26
1650 2405 7.487189 GGAAATCATGAGTAGCTGAACAAATTG 59.513 37.037 0.09 0.00 0.00 2.32
1672 2427 1.686587 CCACTCCACCCCTTTTTCAAC 59.313 52.381 0.00 0.00 0.00 3.18
1674 2429 0.958822 CTCCACCCCTTTTTCAACGG 59.041 55.000 0.00 0.00 0.00 4.44
1726 2481 7.003939 TCGTAGACTTGTTGCATATCATTTG 57.996 36.000 0.00 0.00 0.00 2.32
1727 2482 6.037062 TCGTAGACTTGTTGCATATCATTTGG 59.963 38.462 0.00 0.00 0.00 3.28
1749 2504 6.012745 TGGCAGAGCTATATAGAGATTGACA 58.987 40.000 14.16 10.38 0.00 3.58
1802 2558 6.985117 TGCAAAGAGAAAACTGCATTAGAAT 58.015 32.000 0.00 0.00 39.77 2.40
1820 2576 9.057089 CATTAGAATCCCCTAAACTATCACAAC 57.943 37.037 0.00 0.00 32.95 3.32
1830 2586 6.591834 CCTAAACTATCACAACTTCCTCACTG 59.408 42.308 0.00 0.00 0.00 3.66
1856 2612 4.947883 TCCCTCAACTTGAATCTCTAGGA 58.052 43.478 0.00 0.00 0.00 2.94
1880 2636 2.742589 GGGCTTCCTAAACTTGTCTTCG 59.257 50.000 0.00 0.00 0.00 3.79
1901 2659 3.526534 GTCTCACCTAGCTCAATTCCAC 58.473 50.000 0.00 0.00 0.00 4.02
1906 2664 5.324409 TCACCTAGCTCAATTCCACAAAAT 58.676 37.500 0.00 0.00 0.00 1.82
1926 2684 7.118101 ACAAAATAAAATGTGCCACATGATCAC 59.882 33.333 11.79 4.80 37.97 3.06
1949 2707 3.303938 CCCCTCAGCATCTTCTCTTAGA 58.696 50.000 0.00 0.00 0.00 2.10
1979 2737 2.039831 GGGGGCTATGTCCAGGGA 60.040 66.667 0.00 0.00 0.00 4.20
1982 2740 0.984995 GGGGCTATGTCCAGGGATAC 59.015 60.000 0.00 0.00 0.00 2.24
2139 2956 1.227380 GCGAGTTGCGGAGATCCAT 60.227 57.895 0.00 0.00 41.29 3.41
2151 2968 2.971330 GGAGATCCATCACATCTCACCT 59.029 50.000 10.95 0.00 45.71 4.00
2222 3042 1.470098 CCTAATATCAGCGCCAATGCC 59.530 52.381 2.29 0.00 34.65 4.40
2223 3043 2.153645 CTAATATCAGCGCCAATGCCA 58.846 47.619 2.29 0.00 34.65 4.92
2239 3059 7.063308 CGCCAATGCCAACCAATTAATTATATC 59.937 37.037 0.00 0.00 0.00 1.63
2577 3416 6.922247 TTAATTGGTTACGTTGTTCACAGA 57.078 33.333 0.00 0.00 0.00 3.41
2578 3417 7.499321 TTAATTGGTTACGTTGTTCACAGAT 57.501 32.000 0.00 0.00 0.00 2.90
2614 3453 4.401519 AGAATTCAGCATCCCAGTTCAATG 59.598 41.667 8.44 0.00 0.00 2.82
2804 3646 1.003696 GCAGAACTTTGGGAGTAGCCT 59.996 52.381 0.00 0.00 37.72 4.58
2809 3651 4.349930 AGAACTTTGGGAGTAGCCTGTTTA 59.650 41.667 0.00 0.00 37.72 2.01
2848 3693 9.573166 TTGGTTGTTATCATCTTATCTATTGGG 57.427 33.333 0.00 0.00 0.00 4.12
2896 3741 4.033894 GCACTCTGCACACTTCGT 57.966 55.556 0.00 0.00 44.26 3.85
2897 3742 2.311294 GCACTCTGCACACTTCGTT 58.689 52.632 0.00 0.00 44.26 3.85
2898 3743 0.657840 GCACTCTGCACACTTCGTTT 59.342 50.000 0.00 0.00 44.26 3.60
2899 3744 1.864711 GCACTCTGCACACTTCGTTTA 59.135 47.619 0.00 0.00 44.26 2.01
2900 3745 2.286833 GCACTCTGCACACTTCGTTTAA 59.713 45.455 0.00 0.00 44.26 1.52
2901 3746 3.604772 GCACTCTGCACACTTCGTTTAAG 60.605 47.826 0.00 0.00 44.26 1.85
2902 3747 2.544267 ACTCTGCACACTTCGTTTAAGC 59.456 45.455 0.00 0.00 38.93 3.09
2903 3748 2.543848 CTCTGCACACTTCGTTTAAGCA 59.456 45.455 0.00 0.00 38.93 3.91
2904 3749 3.138304 TCTGCACACTTCGTTTAAGCAT 58.862 40.909 0.00 0.00 38.93 3.79
2905 3750 4.311606 TCTGCACACTTCGTTTAAGCATA 58.688 39.130 0.00 0.00 38.93 3.14
2906 3751 4.388773 TCTGCACACTTCGTTTAAGCATAG 59.611 41.667 0.00 0.00 38.93 2.23
2907 3752 4.062293 TGCACACTTCGTTTAAGCATAGT 58.938 39.130 0.00 0.00 38.93 2.12
2908 3753 4.513692 TGCACACTTCGTTTAAGCATAGTT 59.486 37.500 0.00 0.00 38.93 2.24
2909 3754 5.697178 TGCACACTTCGTTTAAGCATAGTTA 59.303 36.000 0.00 0.00 38.93 2.24
2910 3755 6.203145 TGCACACTTCGTTTAAGCATAGTTAA 59.797 34.615 0.00 0.00 38.93 2.01
2911 3756 7.073265 GCACACTTCGTTTAAGCATAGTTAAA 58.927 34.615 0.00 0.00 38.93 1.52
2912 3757 7.588488 GCACACTTCGTTTAAGCATAGTTAAAA 59.412 33.333 0.00 0.00 38.93 1.52
2913 3758 9.440784 CACACTTCGTTTAAGCATAGTTAAAAA 57.559 29.630 0.00 0.00 38.93 1.94
2949 3794 3.640992 GCTTAAGCGCGCCTAGGC 61.641 66.667 30.33 27.28 37.85 3.93
2950 3795 2.107141 CTTAAGCGCGCCTAGGCT 59.893 61.111 30.55 14.71 42.33 4.58
2951 3796 1.951631 CTTAAGCGCGCCTAGGCTC 60.952 63.158 30.55 22.76 38.88 4.70
2952 3797 2.356818 CTTAAGCGCGCCTAGGCTCT 62.357 60.000 30.55 20.68 38.88 4.09
2953 3798 1.105167 TTAAGCGCGCCTAGGCTCTA 61.105 55.000 30.55 9.53 38.88 2.43
2954 3799 1.516365 TAAGCGCGCCTAGGCTCTAG 61.516 60.000 30.55 18.84 38.88 2.43
2955 3800 4.350441 GCGCGCCTAGGCTCTAGG 62.350 72.222 30.55 16.12 39.32 3.02
2962 3807 0.599060 CCTAGGCTCTAGGCGTTAGC 59.401 60.000 13.35 5.20 46.23 3.09
2974 3819 2.916583 CGTTAGCAGAACGCATTGC 58.083 52.632 10.44 0.00 46.13 3.56
2997 3842 4.433304 CGCATAACTACGCTTAATTTGTGC 59.567 41.667 4.08 4.08 0.00 4.57
2998 3843 5.328691 GCATAACTACGCTTAATTTGTGCA 58.671 37.500 7.59 0.00 0.00 4.57
2999 3844 5.971202 GCATAACTACGCTTAATTTGTGCAT 59.029 36.000 0.00 0.00 0.00 3.96
3000 3845 7.129622 GCATAACTACGCTTAATTTGTGCATA 58.870 34.615 0.00 0.00 0.00 3.14
3001 3846 7.642194 GCATAACTACGCTTAATTTGTGCATAA 59.358 33.333 0.00 0.00 0.00 1.90
3002 3847 8.943925 CATAACTACGCTTAATTTGTGCATAAC 58.056 33.333 0.00 0.00 0.00 1.89
3003 3848 6.737254 ACTACGCTTAATTTGTGCATAACT 57.263 33.333 0.00 0.00 0.00 2.24
3004 3849 6.542852 ACTACGCTTAATTTGTGCATAACTG 58.457 36.000 0.00 0.00 0.00 3.16
3015 3860 2.693797 GCATAACTGCGCATAAGCAT 57.306 45.000 12.24 0.00 46.97 3.79
3016 3861 2.313234 GCATAACTGCGCATAAGCATG 58.687 47.619 12.24 11.51 46.97 4.06
3029 3874 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
3030 3875 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
3031 3876 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
3032 3877 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
3033 3878 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
3039 3884 2.921126 CTTTGGTCAGTAAAGCGCAAG 58.079 47.619 11.47 0.00 43.44 4.01
3040 3885 1.234821 TTGGTCAGTAAAGCGCAAGG 58.765 50.000 11.47 0.00 38.28 3.61
3041 3886 1.234615 TGGTCAGTAAAGCGCAAGGC 61.235 55.000 11.47 0.00 44.05 4.35
3052 3897 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
3053 3898 2.354539 CAAGGCGGTGGCAAAACG 60.355 61.111 0.00 0.00 42.47 3.60
3058 3903 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
3059 3904 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
3060 3905 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
3061 3906 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
3062 3907 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
3063 3908 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
3064 3909 2.097637 GTGGCAAAACGCACAATTAACG 60.098 45.455 0.00 0.00 45.17 3.18
3065 3910 1.136748 GGCAAAACGCACAATTAACGC 60.137 47.619 0.00 0.00 45.17 4.84
3066 3911 1.136748 GCAAAACGCACAATTAACGCC 60.137 47.619 0.00 0.00 41.79 5.68
3067 3912 2.389998 CAAAACGCACAATTAACGCCT 58.610 42.857 0.00 0.00 0.00 5.52
3068 3913 3.556513 CAAAACGCACAATTAACGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
3069 3914 3.465122 AAACGCACAATTAACGCCTAG 57.535 42.857 0.00 0.00 0.00 3.02
3070 3915 0.725117 ACGCACAATTAACGCCTAGC 59.275 50.000 0.00 0.00 0.00 3.42
3222 4088 8.149631 TCTTATCATCCATATCCTATTGTGCA 57.850 34.615 0.00 0.00 0.00 4.57
3284 4156 2.818274 GTTTAGGAGCACCCGCCG 60.818 66.667 0.00 0.00 40.87 6.46
3430 4885 4.076394 ACAGCCAATGTTTATGTTACGGT 58.924 39.130 0.00 0.00 39.96 4.83
3481 4936 9.277565 CATGCTTACAAATGTGTCATAGTTAAC 57.722 33.333 0.00 0.00 39.30 2.01
3523 4979 7.989826 ACTAATCATGAGTTTAGCACAATTCC 58.010 34.615 13.64 0.00 32.63 3.01
3568 5024 6.659668 ACTCAAATTAGCCTTCTTTAGTTCCC 59.340 38.462 0.00 0.00 0.00 3.97
3611 5067 1.731720 CTCAGGGTTTGAGCTAGTGC 58.268 55.000 0.00 0.00 46.30 4.40
3612 5068 1.002430 CTCAGGGTTTGAGCTAGTGCA 59.998 52.381 0.00 0.00 46.30 4.57
3613 5069 1.160137 CAGGGTTTGAGCTAGTGCAC 58.840 55.000 9.40 9.40 42.74 4.57
3648 5121 2.162208 CGCCGTACCTTGTAGTTGTAGA 59.838 50.000 0.00 0.00 0.00 2.59
3649 5122 3.505836 GCCGTACCTTGTAGTTGTAGAC 58.494 50.000 0.00 0.00 0.00 2.59
3650 5123 3.192212 GCCGTACCTTGTAGTTGTAGACT 59.808 47.826 0.00 0.00 42.55 3.24
3651 5124 4.321527 GCCGTACCTTGTAGTTGTAGACTT 60.322 45.833 0.00 0.00 39.86 3.01
3652 5125 5.159209 CCGTACCTTGTAGTTGTAGACTTG 58.841 45.833 0.00 0.00 39.86 3.16
3653 5126 5.278660 CCGTACCTTGTAGTTGTAGACTTGT 60.279 44.000 0.00 0.00 39.86 3.16
3654 5127 6.072508 CCGTACCTTGTAGTTGTAGACTTGTA 60.073 42.308 0.00 0.00 39.86 2.41
3655 5128 7.020010 CGTACCTTGTAGTTGTAGACTTGTAG 58.980 42.308 0.00 0.00 39.86 2.74
3753 5294 2.430332 ACTCTTGCAGATGACTAGCCTC 59.570 50.000 0.00 0.00 0.00 4.70
3754 5295 1.406898 TCTTGCAGATGACTAGCCTCG 59.593 52.381 0.00 0.00 0.00 4.63
3755 5296 0.461548 TTGCAGATGACTAGCCTCGG 59.538 55.000 0.00 0.00 0.00 4.63
3758 5299 1.268352 GCAGATGACTAGCCTCGGTAG 59.732 57.143 0.00 0.00 39.25 3.18
3891 5432 5.238868 GTCTGTAAAAAGGACCCTTCTTGTC 59.761 44.000 1.22 0.00 34.84 3.18
3963 5504 3.091545 GTGCTCAATGATTCTTCCCCAA 58.908 45.455 0.00 0.00 0.00 4.12
3986 5527 4.730949 AAATCTGAGCAACAATGATGGG 57.269 40.909 0.00 0.00 0.00 4.00
4089 5633 9.450807 CGTTCTTTTTGTTTATCAGTTGAGATT 57.549 29.630 0.00 0.00 0.00 2.40
4140 5685 5.813383 AGGCTCACAGATATATTGGAATGG 58.187 41.667 0.00 0.00 0.00 3.16
4281 5826 8.398665 CAACCTTGCCACTACTAATCTTAAATC 58.601 37.037 0.00 0.00 0.00 2.17
4428 5973 4.697514 TGTCTCTGCTGTAAATATCTGCC 58.302 43.478 0.00 0.00 0.00 4.85
4537 6094 2.032030 CAAGCGTCTTCACGTTTCCATT 60.032 45.455 0.00 0.00 45.21 3.16
4662 6219 8.655935 ACCCTTCTGTTCAAATATTCTTCAAT 57.344 30.769 0.00 0.00 0.00 2.57
4818 6384 6.349611 GCTTATTTCGGCAATACCATCATCAT 60.350 38.462 0.00 0.00 39.03 2.45
4855 6421 2.024176 TTGGCTCTTGGATTAGTCGC 57.976 50.000 0.00 0.00 0.00 5.19
4868 6434 1.450025 TAGTCGCGAGTCATGACTGT 58.550 50.000 32.50 10.48 42.59 3.55
4869 6435 0.598562 AGTCGCGAGTCATGACTGTT 59.401 50.000 32.50 9.65 42.66 3.16
4910 6477 2.246739 GCTGACGTGCTGTTGCTGA 61.247 57.895 0.00 0.00 40.48 4.26
4911 6478 1.775039 GCTGACGTGCTGTTGCTGAA 61.775 55.000 0.00 0.00 40.48 3.02
4952 6519 2.889045 AGTTGCTGCTGACAATGTTGAT 59.111 40.909 0.00 0.00 0.00 2.57
5105 6733 2.475111 CGTATCGCCGAATTGCTGTATT 59.525 45.455 0.00 0.00 0.00 1.89
5108 6736 0.042188 CGCCGAATTGCTGTATTCCG 60.042 55.000 0.00 0.00 32.12 4.30
5135 6777 4.296690 CCTGTTTCCTTATCGTCGTATCC 58.703 47.826 0.00 0.00 0.00 2.59
5137 6779 3.627123 TGTTTCCTTATCGTCGTATCCGA 59.373 43.478 0.00 0.00 41.73 4.55
5140 6782 3.062763 TCCTTATCGTCGTATCCGAGTC 58.937 50.000 0.00 0.00 45.26 3.36
5141 6783 2.159234 CCTTATCGTCGTATCCGAGTCC 59.841 54.545 0.00 0.00 45.26 3.85
5142 6784 1.422388 TATCGTCGTATCCGAGTCCG 58.578 55.000 0.00 0.00 45.26 4.79
5143 6785 0.531532 ATCGTCGTATCCGAGTCCGT 60.532 55.000 0.00 0.00 45.26 4.69
5144 6786 1.148157 TCGTCGTATCCGAGTCCGTC 61.148 60.000 0.00 0.00 45.26 4.79
5160 6802 0.914551 CGTCGCATCGGTAGTTTGAG 59.085 55.000 0.00 0.00 0.00 3.02
5217 6859 0.271927 ATCTGCCCCTCATTCCCCTA 59.728 55.000 0.00 0.00 0.00 3.53
5229 6871 7.184570 CCCCTCATTCCCCTATTAAGATTCATA 59.815 40.741 0.00 0.00 0.00 2.15
5231 6873 7.766278 CCTCATTCCCCTATTAAGATTCATACG 59.234 40.741 0.00 0.00 0.00 3.06
5253 6895 5.018240 CGAAGCTGATCGTTGATTCTTTTC 58.982 41.667 0.00 0.00 38.01 2.29
5307 6950 6.870971 TGTAAACAGTTGAGTATGGGTTTC 57.129 37.500 0.00 0.00 31.63 2.78
5320 6963 2.294074 TGGGTTTCGAGGAACAAACAG 58.706 47.619 2.63 0.00 34.68 3.16
5337 6980 2.409975 ACAGATGCATTTTGTTGCTGC 58.590 42.857 0.00 0.00 43.18 5.25
5483 7132 4.814224 ATTACATGTAGGGGGAGCAAAT 57.186 40.909 5.56 0.00 0.00 2.32
5491 7140 3.584733 AGGGGGAGCAAATGAAGATAC 57.415 47.619 0.00 0.00 0.00 2.24
5564 7213 8.494433 TCAAACAGAGAAGGCAAATATAGGTAT 58.506 33.333 0.00 0.00 0.00 2.73
5674 7333 3.508744 CAGAATGCCAGCGGTTTAAAT 57.491 42.857 0.00 0.00 0.00 1.40
5691 7350 1.812235 AATGTGAGCGAGACAATGCA 58.188 45.000 0.00 0.00 0.00 3.96
5697 7356 2.780643 CGAGACAATGCAGTGCGG 59.219 61.111 15.18 5.14 0.00 5.69
5739 7398 6.363882 GGATCAGAATCCTCAGATTTTCCTT 58.636 40.000 0.00 0.00 46.97 3.36
6055 7716 3.291584 TGTGTATGAGTGGTTGCCAAAA 58.708 40.909 0.00 0.00 34.18 2.44
6103 7764 1.202330 CTCATGGCTCTCCACCTCTT 58.798 55.000 0.00 0.00 46.92 2.85
6166 7827 0.241749 CGCTGCTTTTCCTGCATTCA 59.758 50.000 0.00 0.00 39.86 2.57
6217 7878 5.118664 CGATCTACGGCCTTGTAACATATTG 59.881 44.000 0.00 0.00 38.46 1.90
6274 7935 6.837048 ACTTTGGTATGTTAACCCTGTTTCTT 59.163 34.615 2.48 0.00 38.90 2.52
6284 7945 2.668212 TGTTTCTTCAGCCCGGCG 60.668 61.111 3.05 0.00 0.00 6.46
6325 7986 0.467384 CCAGACTGCCATACCTGGAG 59.533 60.000 0.00 0.00 46.84 3.86
6332 7993 2.423446 CATACCTGGAGCCGGAGC 59.577 66.667 5.05 0.00 40.32 4.70
6343 8004 4.180946 CCGGAGCTCCTCACGACG 62.181 72.222 29.73 14.56 31.08 5.12
6423 8084 0.548682 ACTGGACTGCCTCCCTTGAT 60.549 55.000 0.00 0.00 38.49 2.57
6453 8114 5.859205 AAGAAAGTTTCAGAAGCATTGGT 57.141 34.783 17.65 0.00 0.00 3.67
6510 8171 2.557869 AGGGAACTGGCCTTATGTACA 58.442 47.619 3.32 0.00 41.13 2.90
6546 8207 2.418197 GCCGTCATTGGTCTTAGCTGTA 60.418 50.000 0.00 0.00 0.00 2.74
6601 8274 2.152016 GTCAGTTGTTGAGCCCCTTAC 58.848 52.381 0.00 0.00 36.21 2.34
6622 8295 2.354343 GAAGCCTCCTGCAGCCTT 59.646 61.111 8.66 7.49 44.83 4.35
6731 8405 9.060347 GTCAGCATTTCTATCATTTCCAATAGA 57.940 33.333 0.00 0.00 33.69 1.98
7072 8748 2.223409 CGTGATCTCGTCCCAAATCGTA 60.223 50.000 8.97 0.00 0.00 3.43
7109 8785 0.901124 CAGGAGTACCTTGAGCAGCT 59.099 55.000 0.00 0.00 45.36 4.24
7110 8786 0.901124 AGGAGTACCTTGAGCAGCTG 59.099 55.000 10.11 10.11 45.36 4.24
7111 8787 0.898320 GGAGTACCTTGAGCAGCTGA 59.102 55.000 20.43 0.00 0.00 4.26
7112 8788 1.484240 GGAGTACCTTGAGCAGCTGAT 59.516 52.381 20.43 12.64 0.00 2.90
7113 8789 2.695666 GGAGTACCTTGAGCAGCTGATA 59.304 50.000 20.43 0.00 0.00 2.15
7143 8819 3.102090 TCGTGGCGAGATCTGATCT 57.898 52.632 19.63 19.63 43.70 2.75
7144 8820 0.665298 TCGTGGCGAGATCTGATCTG 59.335 55.000 24.04 16.23 40.38 2.90
7145 8821 0.383590 CGTGGCGAGATCTGATCTGT 59.616 55.000 24.04 1.79 40.38 3.41
7146 8822 1.202348 CGTGGCGAGATCTGATCTGTT 60.202 52.381 24.04 1.01 40.38 3.16
7147 8823 2.200067 GTGGCGAGATCTGATCTGTTG 58.800 52.381 24.04 14.14 40.38 3.33
7160 8836 1.169577 TCTGTTGTTGTTGTTGCGGT 58.830 45.000 0.00 0.00 0.00 5.68
7162 8838 1.132262 CTGTTGTTGTTGTTGCGGTCT 59.868 47.619 0.00 0.00 0.00 3.85
7186 8862 0.745128 TTTCACGACACACCACCACC 60.745 55.000 0.00 0.00 0.00 4.61
7187 8863 1.900545 TTCACGACACACCACCACCA 61.901 55.000 0.00 0.00 0.00 4.17
7188 8864 1.227823 CACGACACACCACCACCAT 60.228 57.895 0.00 0.00 0.00 3.55
7317 8993 5.265477 GCAAAACAATTTCCTTGCAGAAAC 58.735 37.500 3.47 0.00 42.91 2.78
7399 11309 7.981102 ATAACCTGACCTTTACAAAAGACTC 57.019 36.000 0.99 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 138 0.036875 AAAGCGGAAGAAGGTCCCTG 59.963 55.000 0.00 0.00 33.74 4.45
137 157 2.975799 GCAAGGTTTCGGGCGTGA 60.976 61.111 0.00 0.00 0.00 4.35
215 235 4.016706 CTGGTCCCGCCGGAAAGT 62.017 66.667 5.05 0.00 46.81 2.66
511 584 0.253820 AGATTCATGGGGTGGGAGGT 60.254 55.000 0.00 0.00 0.00 3.85
626 701 6.030849 CCGCAAAATAACCGTCAAAATATGA 58.969 36.000 0.00 0.00 35.05 2.15
663 738 6.717084 GGTTTCCCTGCTTTATATTAGAGCAT 59.283 38.462 7.52 0.00 44.56 3.79
665 740 5.473846 GGGTTTCCCTGCTTTATATTAGAGC 59.526 44.000 0.00 0.00 41.34 4.09
681 756 5.687780 TCCGAAATAGAAATAGGGTTTCCC 58.312 41.667 0.00 0.00 45.90 3.97
682 757 6.354938 ACTCCGAAATAGAAATAGGGTTTCC 58.645 40.000 0.00 0.00 0.00 3.13
683 758 8.202811 ACTACTCCGAAATAGAAATAGGGTTTC 58.797 37.037 0.00 0.00 0.00 2.78
684 759 8.087303 ACTACTCCGAAATAGAAATAGGGTTT 57.913 34.615 0.00 0.00 0.00 3.27
685 760 7.672122 ACTACTCCGAAATAGAAATAGGGTT 57.328 36.000 0.00 0.00 0.00 4.11
686 761 8.003629 ACTACTACTCCGAAATAGAAATAGGGT 58.996 37.037 0.00 0.00 0.00 4.34
687 762 8.406730 ACTACTACTCCGAAATAGAAATAGGG 57.593 38.462 0.00 0.00 0.00 3.53
688 763 9.287373 AGACTACTACTCCGAAATAGAAATAGG 57.713 37.037 0.00 0.00 0.00 2.57
697 772 8.880750 GCAATTTTTAGACTACTACTCCGAAAT 58.119 33.333 0.00 0.00 0.00 2.17
698 773 7.874016 TGCAATTTTTAGACTACTACTCCGAAA 59.126 33.333 0.00 0.00 0.00 3.46
699 774 7.380536 TGCAATTTTTAGACTACTACTCCGAA 58.619 34.615 0.00 0.00 0.00 4.30
700 775 6.927416 TGCAATTTTTAGACTACTACTCCGA 58.073 36.000 0.00 0.00 0.00 4.55
707 782 8.946085 TCGATGAATTGCAATTTTTAGACTACT 58.054 29.630 24.81 0.00 0.00 2.57
708 783 9.722056 ATCGATGAATTGCAATTTTTAGACTAC 57.278 29.630 24.81 9.95 0.00 2.73
710 785 9.722056 GTATCGATGAATTGCAATTTTTAGACT 57.278 29.630 24.81 10.61 0.00 3.24
711 786 9.502145 TGTATCGATGAATTGCAATTTTTAGAC 57.498 29.630 24.81 16.37 0.00 2.59
712 787 9.502145 GTGTATCGATGAATTGCAATTTTTAGA 57.498 29.630 24.81 20.36 0.00 2.10
713 788 8.463709 CGTGTATCGATGAATTGCAATTTTTAG 58.536 33.333 24.81 16.45 42.86 1.85
714 789 7.430793 CCGTGTATCGATGAATTGCAATTTTTA 59.569 33.333 24.81 14.91 42.86 1.52
715 790 6.253298 CCGTGTATCGATGAATTGCAATTTTT 59.747 34.615 24.81 15.42 42.86 1.94
716 791 5.743398 CCGTGTATCGATGAATTGCAATTTT 59.257 36.000 24.81 15.76 42.86 1.82
717 792 5.273170 CCGTGTATCGATGAATTGCAATTT 58.727 37.500 24.81 11.00 42.86 1.82
718 793 4.261155 CCCGTGTATCGATGAATTGCAATT 60.261 41.667 24.33 24.33 42.86 2.32
719 794 3.250762 CCCGTGTATCGATGAATTGCAAT 59.749 43.478 5.99 5.99 42.86 3.56
721 796 2.209273 CCCGTGTATCGATGAATTGCA 58.791 47.619 8.54 0.00 42.86 4.08
722 797 1.069906 GCCCGTGTATCGATGAATTGC 60.070 52.381 8.54 0.02 42.86 3.56
723 798 1.192312 CGCCCGTGTATCGATGAATTG 59.808 52.381 8.54 0.00 42.86 2.32
724 799 1.497991 CGCCCGTGTATCGATGAATT 58.502 50.000 8.54 0.00 42.86 2.17
726 801 1.590525 GCGCCCGTGTATCGATGAA 60.591 57.895 8.54 0.00 42.86 2.57
728 803 3.036084 GGCGCCCGTGTATCGATG 61.036 66.667 18.11 0.00 42.86 3.84
729 804 4.640855 CGGCGCCCGTGTATCGAT 62.641 66.667 23.46 2.16 42.73 3.59
812 1104 1.134220 CGCACCAGCCCTCCTTTATTA 60.134 52.381 0.00 0.00 37.52 0.98
820 1112 1.312371 TTAATTGCGCACCAGCCCTC 61.312 55.000 11.12 0.00 37.52 4.30
877 1193 1.603739 GGAGGTTTGCGGCTTCCTT 60.604 57.895 0.00 0.00 0.00 3.36
880 1196 2.954611 GTGGAGGTTTGCGGCTTC 59.045 61.111 0.00 0.00 0.00 3.86
992 1334 3.869272 GAGGTTGCATCGCCGCAG 61.869 66.667 0.00 0.00 44.14 5.18
1004 1346 5.163195 ACCTTTATGCTGATATTCCGAGGTT 60.163 40.000 0.00 0.00 30.01 3.50
1013 1355 3.769739 TGCGGACCTTTATGCTGATAT 57.230 42.857 0.00 0.00 0.00 1.63
1109 1455 0.390860 GTCATCATAGGCCTCTGCGT 59.609 55.000 9.68 0.00 38.85 5.24
1115 1461 1.419387 GAAGCTGGTCATCATAGGCCT 59.581 52.381 11.78 11.78 0.00 5.19
1117 1463 1.875576 CGGAAGCTGGTCATCATAGGC 60.876 57.143 0.00 0.00 0.00 3.93
1146 1650 0.603065 GCGGGCAAAGAAACCTCAAT 59.397 50.000 0.00 0.00 0.00 2.57
1194 1698 4.141287 TCGTTTCCAATTTGTGAGGACAT 58.859 39.130 0.00 0.00 30.13 3.06
1205 1709 6.530019 AAATAGAAGCCATCGTTTCCAATT 57.470 33.333 0.00 0.00 29.93 2.32
1244 1748 0.110486 GGAAAGCCTTCACCCTGTCA 59.890 55.000 0.00 0.00 32.75 3.58
1255 1759 1.690219 ATCCGCGATCTGGAAAGCCT 61.690 55.000 8.23 0.00 39.39 4.58
1269 1773 3.326747 GGGACATAGTCATGTTATCCGC 58.673 50.000 0.00 0.00 45.58 5.54
1314 1821 5.662674 ACAGTGGTCCTTCTATAGTTGAC 57.337 43.478 0.00 5.29 0.00 3.18
1320 1828 7.179966 TCTAGTGAAACAGTGGTCCTTCTATA 58.820 38.462 0.00 0.00 41.43 1.31
1321 1829 6.017192 TCTAGTGAAACAGTGGTCCTTCTAT 58.983 40.000 0.00 0.00 41.43 1.98
1461 1984 5.520376 AATCAGCACAAAAAGTTGCTAGT 57.480 34.783 0.00 0.00 38.39 2.57
1469 1992 4.022935 TGCCAGTCTAATCAGCACAAAAAG 60.023 41.667 0.00 0.00 0.00 2.27
1487 2010 5.033589 AGGACTAAATGAGAGATTGCCAG 57.966 43.478 0.00 0.00 0.00 4.85
1488 2011 4.718774 AGAGGACTAAATGAGAGATTGCCA 59.281 41.667 0.00 0.00 0.00 4.92
1490 2014 5.070313 AGGAGAGGACTAAATGAGAGATTGC 59.930 44.000 0.00 0.00 0.00 3.56
1546 2213 4.705023 ACAAACAGAATACAACATAGCCCC 59.295 41.667 0.00 0.00 0.00 5.80
1548 2215 8.512138 ACTTAACAAACAGAATACAACATAGCC 58.488 33.333 0.00 0.00 0.00 3.93
1642 2397 2.316108 GGGTGGAGTGGACAATTTGTT 58.684 47.619 3.08 0.00 0.00 2.83
1650 2405 1.133606 TGAAAAAGGGGTGGAGTGGAC 60.134 52.381 0.00 0.00 0.00 4.02
1672 2427 5.786264 AACCTGTTATACTCCATACTCCG 57.214 43.478 0.00 0.00 0.00 4.63
1674 2429 7.707035 CACTCAAACCTGTTATACTCCATACTC 59.293 40.741 0.00 0.00 0.00 2.59
1719 2474 7.730672 TCTCTATATAGCTCTGCCAAATGAT 57.269 36.000 4.75 0.00 0.00 2.45
1726 2481 6.522625 TGTCAATCTCTATATAGCTCTGCC 57.477 41.667 4.75 0.00 0.00 4.85
1727 2482 8.249638 TGAATGTCAATCTCTATATAGCTCTGC 58.750 37.037 4.75 0.00 0.00 4.26
1749 2504 2.708051 CACCAGTGCAGAGTGATGAAT 58.292 47.619 5.00 0.00 33.21 2.57
1802 2558 5.098663 AGGAAGTTGTGATAGTTTAGGGGA 58.901 41.667 0.00 0.00 0.00 4.81
1820 2576 1.614824 AGGGAGCCCAGTGAGGAAG 60.615 63.158 8.53 0.00 41.22 3.46
1830 2586 1.283321 AGATTCAAGTTGAGGGAGCCC 59.717 52.381 5.56 0.00 0.00 5.19
1856 2612 2.649816 AGACAAGTTTAGGAAGCCCCAT 59.350 45.455 0.00 0.00 37.41 4.00
1880 2636 3.055819 TGTGGAATTGAGCTAGGTGAGAC 60.056 47.826 0.00 0.00 0.00 3.36
1901 2659 7.413219 GGTGATCATGTGGCACATTTTATTTTG 60.413 37.037 29.57 17.58 44.52 2.44
1906 2664 3.446873 GGGTGATCATGTGGCACATTTTA 59.553 43.478 29.57 18.17 44.52 1.52
1949 2707 4.478686 ACATAGCCCCCTTTCTCTGTTATT 59.521 41.667 0.00 0.00 0.00 1.40
2022 2780 2.421399 GCTTGAGCTCCATTGCCCC 61.421 63.158 12.15 0.00 38.21 5.80
2104 2921 7.253983 CGCAACTCGCTCTTTTCATATTAAGTA 60.254 37.037 0.00 0.00 39.08 2.24
2139 2956 2.027837 CACATGGACAGGTGAGATGTGA 60.028 50.000 11.28 0.00 45.01 3.58
2151 2968 2.535012 TGTCGCTAAACACATGGACA 57.465 45.000 0.00 0.00 32.51 4.02
2261 3081 9.642327 GCACATTCATATTTGGCAATATCATAA 57.358 29.630 0.00 0.00 33.88 1.90
2262 3082 8.804204 TGCACATTCATATTTGGCAATATCATA 58.196 29.630 0.00 0.00 33.88 2.15
2263 3083 7.672240 TGCACATTCATATTTGGCAATATCAT 58.328 30.769 0.00 0.00 33.88 2.45
2264 3084 7.052142 TGCACATTCATATTTGGCAATATCA 57.948 32.000 0.00 0.00 33.88 2.15
2265 3085 7.949903 TTGCACATTCATATTTGGCAATATC 57.050 32.000 0.00 0.00 33.88 1.63
2266 3086 7.094975 GCATTGCACATTCATATTTGGCAATAT 60.095 33.333 0.00 0.45 45.52 1.28
2267 3087 6.203145 GCATTGCACATTCATATTTGGCAATA 59.797 34.615 0.00 0.00 45.52 1.90
2269 3089 4.333095 GCATTGCACATTCATATTTGGCAA 59.667 37.500 3.15 0.00 42.97 4.52
2305 3125 4.760878 TGCAATGCACGTTAATAGTAGGA 58.239 39.130 2.72 0.00 31.71 2.94
2366 3186 5.710099 TCAGCTAAAACATTTGGGGTAGAAG 59.290 40.000 0.00 0.00 0.00 2.85
2565 3404 3.670055 GCAATTTCCATCTGTGAACAACG 59.330 43.478 0.00 0.00 0.00 4.10
2577 3416 5.419788 TGCTGAATTCTACTGCAATTTCCAT 59.580 36.000 7.05 0.00 38.74 3.41
2578 3417 4.766373 TGCTGAATTCTACTGCAATTTCCA 59.234 37.500 7.05 0.00 38.74 3.53
2668 3507 4.254492 GTTTTCTTCGGTAGAGAATGGCT 58.746 43.478 0.00 0.00 33.51 4.75
2804 3646 8.967664 ACAACCAAACTAACTAGACATAAACA 57.032 30.769 0.00 0.00 0.00 2.83
2809 3651 9.959721 ATGATAACAACCAAACTAACTAGACAT 57.040 29.630 0.00 0.00 0.00 3.06
2848 3693 2.480555 CACAGCGACGCCCAATTC 59.519 61.111 17.79 0.00 0.00 2.17
2932 3777 3.640992 GCCTAGGCGCGCTTAAGC 61.641 66.667 32.29 28.27 37.78 3.09
2933 3778 2.356818 AGAGCCTAGGCGCGCTTAAG 62.357 60.000 32.29 22.56 45.41 1.85
2934 3779 1.105167 TAGAGCCTAGGCGCGCTTAA 61.105 55.000 32.29 15.41 45.41 1.85
2935 3780 1.516365 CTAGAGCCTAGGCGCGCTTA 61.516 60.000 32.29 27.04 45.41 3.09
2936 3781 2.833582 TAGAGCCTAGGCGCGCTT 60.834 61.111 32.29 27.46 45.41 4.68
2937 3782 3.291383 CTAGAGCCTAGGCGCGCT 61.291 66.667 32.29 25.96 45.41 5.92
2938 3783 4.350441 CCTAGAGCCTAGGCGCGC 62.350 72.222 28.76 25.94 45.41 6.86
2943 3788 0.599060 GCTAACGCCTAGAGCCTAGG 59.401 60.000 18.85 18.85 38.78 3.02
2944 3789 1.268352 CTGCTAACGCCTAGAGCCTAG 59.732 57.143 0.00 3.06 38.78 3.02
2945 3790 1.133884 TCTGCTAACGCCTAGAGCCTA 60.134 52.381 0.00 0.00 38.78 3.93
2946 3791 0.395862 TCTGCTAACGCCTAGAGCCT 60.396 55.000 0.00 0.00 38.78 4.58
2947 3792 0.460311 TTCTGCTAACGCCTAGAGCC 59.540 55.000 0.00 0.00 38.78 4.70
2948 3793 1.562017 GTTCTGCTAACGCCTAGAGC 58.438 55.000 0.00 0.00 36.72 4.09
2949 3794 1.828832 CGTTCTGCTAACGCCTAGAG 58.171 55.000 11.05 0.00 36.82 2.43
2956 3801 2.916583 GCAATGCGTTCTGCTAACG 58.083 52.632 17.12 17.12 46.63 3.18
2974 3819 4.433304 GCACAAATTAAGCGTAGTTATGCG 59.567 41.667 7.77 0.00 42.84 4.73
2975 3820 5.328691 TGCACAAATTAAGCGTAGTTATGC 58.671 37.500 13.25 13.25 38.47 3.14
2976 3821 8.943925 GTTATGCACAAATTAAGCGTAGTTATG 58.056 33.333 0.00 0.00 32.03 1.90
2977 3822 8.889717 AGTTATGCACAAATTAAGCGTAGTTAT 58.110 29.630 0.00 0.00 32.03 1.89
2978 3823 8.172484 CAGTTATGCACAAATTAAGCGTAGTTA 58.828 33.333 0.00 0.00 32.03 2.24
2979 3824 7.021196 CAGTTATGCACAAATTAAGCGTAGTT 58.979 34.615 0.00 0.00 32.03 2.24
2980 3825 6.542852 CAGTTATGCACAAATTAAGCGTAGT 58.457 36.000 0.00 0.00 32.03 2.73
2997 3842 2.313234 GCATGCTTATGCGCAGTTATG 58.687 47.619 18.32 15.92 44.10 1.90
2998 3843 2.693797 GCATGCTTATGCGCAGTTAT 57.306 45.000 18.32 0.10 44.10 1.89
3012 3857 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
3013 3858 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
3014 3859 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
3015 3860 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
3016 3861 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
3019 3864 2.350772 CCTTGCGCTTTACTGACCAAAG 60.351 50.000 9.73 0.00 36.32 2.77
3020 3865 1.606668 CCTTGCGCTTTACTGACCAAA 59.393 47.619 9.73 0.00 0.00 3.28
3021 3866 1.234821 CCTTGCGCTTTACTGACCAA 58.765 50.000 9.73 0.00 0.00 3.67
3022 3867 1.234615 GCCTTGCGCTTTACTGACCA 61.235 55.000 9.73 0.00 0.00 4.02
3023 3868 1.502190 GCCTTGCGCTTTACTGACC 59.498 57.895 9.73 0.00 0.00 4.02
3035 3880 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
3036 3881 2.354539 CGTTTTGCCACCGCCTTG 60.355 61.111 0.00 0.00 0.00 3.61
3037 3882 4.279043 GCGTTTTGCCACCGCCTT 62.279 61.111 0.00 0.00 41.50 4.35
3040 3885 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
3041 3886 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
3042 3887 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
3043 3888 2.097637 CGTTAATTGTGCGTTTTGCCAC 60.098 45.455 0.00 0.00 45.60 5.01
3044 3889 2.120232 CGTTAATTGTGCGTTTTGCCA 58.880 42.857 0.00 0.00 45.60 4.92
3045 3890 1.136748 GCGTTAATTGTGCGTTTTGCC 60.137 47.619 0.00 0.00 45.60 4.52
3046 3891 1.136748 GGCGTTAATTGTGCGTTTTGC 60.137 47.619 0.00 0.00 46.70 3.68
3047 3892 2.389998 AGGCGTTAATTGTGCGTTTTG 58.610 42.857 0.00 0.00 0.00 2.44
3048 3893 2.785713 AGGCGTTAATTGTGCGTTTT 57.214 40.000 0.00 0.00 0.00 2.43
3049 3894 2.413634 GCTAGGCGTTAATTGTGCGTTT 60.414 45.455 0.00 0.00 0.00 3.60
3050 3895 1.129811 GCTAGGCGTTAATTGTGCGTT 59.870 47.619 0.00 0.00 0.00 4.84
3051 3896 0.725117 GCTAGGCGTTAATTGTGCGT 59.275 50.000 0.00 0.00 0.00 5.24
3052 3897 3.509266 GCTAGGCGTTAATTGTGCG 57.491 52.632 0.00 0.00 0.00 5.34
3074 3919 7.870445 GGCATCCTTAAACACATAGTTCAAAAA 59.130 33.333 0.00 0.00 40.26 1.94
3075 3920 7.232534 AGGCATCCTTAAACACATAGTTCAAAA 59.767 33.333 0.00 0.00 40.26 2.44
3076 3921 6.719370 AGGCATCCTTAAACACATAGTTCAAA 59.281 34.615 0.00 0.00 40.26 2.69
3077 3922 6.150976 CAGGCATCCTTAAACACATAGTTCAA 59.849 38.462 0.00 0.00 40.26 2.69
3078 3923 5.647658 CAGGCATCCTTAAACACATAGTTCA 59.352 40.000 0.00 0.00 40.26 3.18
3079 3924 5.066505 CCAGGCATCCTTAAACACATAGTTC 59.933 44.000 0.00 0.00 40.26 3.01
3080 3925 4.949856 CCAGGCATCCTTAAACACATAGTT 59.050 41.667 0.00 0.00 43.89 2.24
3081 3926 4.526970 CCAGGCATCCTTAAACACATAGT 58.473 43.478 0.00 0.00 0.00 2.12
3082 3927 3.316308 GCCAGGCATCCTTAAACACATAG 59.684 47.826 6.55 0.00 0.00 2.23
3083 3928 3.053693 AGCCAGGCATCCTTAAACACATA 60.054 43.478 15.80 0.00 0.00 2.29
3084 3929 2.102578 GCCAGGCATCCTTAAACACAT 58.897 47.619 6.55 0.00 0.00 3.21
3085 3930 1.075374 AGCCAGGCATCCTTAAACACA 59.925 47.619 15.80 0.00 0.00 3.72
3086 3931 1.839424 AGCCAGGCATCCTTAAACAC 58.161 50.000 15.80 0.00 0.00 3.32
3087 3932 2.603075 AAGCCAGGCATCCTTAAACA 57.397 45.000 15.80 0.00 0.00 2.83
3253 4119 9.000486 GGTGCTCCTAAACAATAATATAGGAAC 58.000 37.037 0.00 0.00 42.41 3.62
3284 4156 0.249657 CTCGCCCTCATCTAAGCACC 60.250 60.000 0.00 0.00 0.00 5.01
3523 4979 3.130516 AGTTTCTCCATCATGCAGCATTG 59.869 43.478 4.69 2.26 0.00 2.82
3568 5024 2.425143 TCCCTTATTCTTGCTGCAGG 57.575 50.000 17.12 5.27 0.00 4.85
3609 5065 2.918345 GCTGATTGGTTGCGGTGCA 61.918 57.895 0.00 0.00 36.47 4.57
3610 5066 2.126346 GCTGATTGGTTGCGGTGC 60.126 61.111 0.00 0.00 0.00 5.01
3611 5067 2.176546 CGCTGATTGGTTGCGGTG 59.823 61.111 0.00 0.00 45.07 4.94
3648 5121 2.162608 CGAGCTAGCACAGACTACAAGT 59.837 50.000 18.83 0.00 0.00 3.16
3649 5122 2.162608 ACGAGCTAGCACAGACTACAAG 59.837 50.000 18.83 0.00 0.00 3.16
3650 5123 2.160205 ACGAGCTAGCACAGACTACAA 58.840 47.619 18.83 0.00 0.00 2.41
3651 5124 1.738350 GACGAGCTAGCACAGACTACA 59.262 52.381 18.83 0.00 0.00 2.74
3652 5125 2.011222 AGACGAGCTAGCACAGACTAC 58.989 52.381 18.83 0.00 0.00 2.73
3653 5126 2.404923 AGACGAGCTAGCACAGACTA 57.595 50.000 18.83 0.00 0.00 2.59
3654 5127 2.404923 TAGACGAGCTAGCACAGACT 57.595 50.000 18.83 14.46 0.00 3.24
3655 5128 2.875933 AGATAGACGAGCTAGCACAGAC 59.124 50.000 18.83 7.88 37.96 3.51
3753 5294 3.700038 AGGTCCTTGACAATAGTCTACCG 59.300 47.826 0.00 0.00 45.20 4.02
3754 5295 5.422650 AGAAGGTCCTTGACAATAGTCTACC 59.577 44.000 9.46 0.00 45.20 3.18
3755 5296 6.532988 AGAAGGTCCTTGACAATAGTCTAC 57.467 41.667 9.46 0.00 45.20 2.59
3758 5299 5.552178 ACAAGAAGGTCCTTGACAATAGTC 58.448 41.667 9.46 0.00 44.66 2.59
3924 5465 2.746472 GCACCTACAAGGAGCCAATAGG 60.746 54.545 4.23 8.42 44.74 2.57
3963 5504 5.012354 ACCCATCATTGTTGCTCAGATTTTT 59.988 36.000 0.00 0.00 0.00 1.94
3986 5527 9.188588 GGGTCATAAAGCTTTAAAAACACTAAC 57.811 33.333 22.13 9.74 0.00 2.34
4140 5685 6.292865 GGCCTTGATGAAGCTTTTACAAAAAC 60.293 38.462 0.00 0.75 0.00 2.43
4276 5821 4.956700 TGTGGTGGTGAAAAACTGGATTTA 59.043 37.500 0.00 0.00 0.00 1.40
4281 5826 3.817709 AATGTGGTGGTGAAAAACTGG 57.182 42.857 0.00 0.00 0.00 4.00
4339 5884 1.142667 TCACACATGGCAGAAGGTTCA 59.857 47.619 0.00 0.00 0.00 3.18
4473 6019 3.975479 TTTTAAAGGTCACCAGGGGAA 57.025 42.857 0.00 0.00 0.00 3.97
4500 6057 1.130561 GCTTGCACGAAATACAGACCC 59.869 52.381 0.00 0.00 0.00 4.46
4537 6094 5.361571 GGACCAAGAAAGTGTTTAAAAGGGA 59.638 40.000 0.00 0.00 0.00 4.20
4584 6141 4.242811 TCTGGTAGCAAATGATATCCCCT 58.757 43.478 0.00 0.00 0.00 4.79
4662 6219 5.185454 ACTGCCTTCAAATCATGAATACGA 58.815 37.500 0.00 0.00 46.62 3.43
4855 6421 4.997905 AAATGTCAACAGTCATGACTCG 57.002 40.909 25.58 21.10 45.81 4.18
4883 6450 3.720193 CACGTCAGCAGCAGCCAC 61.720 66.667 0.00 0.00 43.56 5.01
4922 6489 2.033141 GCAGCAACTCAGGAGGCA 59.967 61.111 0.83 0.00 0.00 4.75
4952 6519 3.153919 CAGGTAGCAGCAACCCTTTTTA 58.846 45.455 0.00 0.00 37.77 1.52
5064 6634 9.229784 CGATACGGCGAGTATATACAAATAATT 57.770 33.333 16.62 0.00 45.47 1.40
5065 6635 7.377928 GCGATACGGCGAGTATATACAAATAAT 59.622 37.037 16.62 0.29 45.47 1.28
5066 6636 6.688385 GCGATACGGCGAGTATATACAAATAA 59.312 38.462 16.62 0.00 45.47 1.40
5067 6637 6.194463 GCGATACGGCGAGTATATACAAATA 58.806 40.000 16.62 0.00 45.47 1.40
5070 6640 3.181507 GGCGATACGGCGAGTATATACAA 60.182 47.826 16.62 0.00 45.47 2.41
5071 6641 2.352651 GGCGATACGGCGAGTATATACA 59.647 50.000 16.62 0.00 45.47 2.29
5072 6642 2.979299 GGCGATACGGCGAGTATATAC 58.021 52.381 16.62 4.60 45.47 1.47
5105 6733 1.719529 TAAGGAAACAGGGACACGGA 58.280 50.000 0.00 0.00 0.00 4.69
5108 6736 3.259902 GACGATAAGGAAACAGGGACAC 58.740 50.000 0.00 0.00 0.00 3.67
5141 6783 0.914551 CTCAAACTACCGATGCGACG 59.085 55.000 0.00 0.00 0.00 5.12
5142 6784 2.273370 TCTCAAACTACCGATGCGAC 57.727 50.000 0.00 0.00 0.00 5.19
5143 6785 2.876091 CTTCTCAAACTACCGATGCGA 58.124 47.619 0.00 0.00 0.00 5.10
5144 6786 1.324736 GCTTCTCAAACTACCGATGCG 59.675 52.381 0.00 0.00 0.00 4.73
5145 6787 2.346803 TGCTTCTCAAACTACCGATGC 58.653 47.619 0.00 0.00 0.00 3.91
5160 6802 6.403333 TGTTCACACGAGTATATTTGCTTC 57.597 37.500 0.00 0.00 0.00 3.86
5175 6817 7.670559 AGATATAGTAGGGGTAGATGTTCACAC 59.329 40.741 0.00 0.00 0.00 3.82
5217 6859 7.573916 CGATCAGCTTCGTATGAATCTTAAT 57.426 36.000 0.00 0.00 34.46 1.40
5231 6873 6.175712 AGAAAAGAATCAACGATCAGCTTC 57.824 37.500 0.00 0.00 0.00 3.86
5307 6950 3.837213 AATGCATCTGTTTGTTCCTCG 57.163 42.857 0.00 0.00 0.00 4.63
5337 6980 5.952526 TGCCAGCATCATGACATTAATAG 57.047 39.130 0.00 0.00 0.00 1.73
5483 7132 4.161189 CCTCTTCCAGAGCAAGTATCTTCA 59.839 45.833 0.00 0.00 40.98 3.02
5491 7140 1.274712 ACCTCCTCTTCCAGAGCAAG 58.725 55.000 0.00 0.00 40.98 4.01
5556 7205 9.878737 AGTTCTTGGCTAGTAGAAATACCTATA 57.121 33.333 0.00 0.00 32.59 1.31
5559 7208 7.497773 AAGTTCTTGGCTAGTAGAAATACCT 57.502 36.000 0.00 0.00 32.59 3.08
5564 7213 8.691661 AATGAAAAGTTCTTGGCTAGTAGAAA 57.308 30.769 0.00 0.00 32.59 2.52
5573 7222 6.703165 ACAATGAAGAATGAAAAGTTCTTGGC 59.297 34.615 5.91 0.00 43.80 4.52
5667 7326 4.554973 GCATTGTCTCGCTCACATTTAAAC 59.445 41.667 0.00 0.00 0.00 2.01
5674 7333 0.033920 ACTGCATTGTCTCGCTCACA 59.966 50.000 0.00 0.00 0.00 3.58
5691 7350 1.744368 CTCATTCAGCTGCCGCACT 60.744 57.895 9.47 0.00 39.10 4.40
5739 7398 4.344679 AGCAAATTTGTGATGGGAAACTCA 59.655 37.500 19.03 0.00 0.00 3.41
5946 7607 2.100605 AGAAACCTGCGATGACCTTC 57.899 50.000 0.00 0.00 0.00 3.46
6055 7716 4.202609 ACAATGTGATCTTGGAGGTTTCCT 60.203 41.667 0.00 0.00 44.36 3.36
6103 7764 1.026182 GTGTGCGGATCTGCCATGAA 61.026 55.000 23.64 1.33 35.94 2.57
6217 7878 0.599204 TTCTGAAGTTGGCGTCGACC 60.599 55.000 10.58 2.55 0.00 4.79
6284 7945 0.603975 GTCAGAGCTGGTTGGTGGTC 60.604 60.000 0.00 0.00 0.00 4.02
6325 7986 4.500116 GTCGTGAGGAGCTCCGGC 62.500 72.222 26.95 22.18 42.08 6.13
6340 8001 2.574399 GGTGTGAGCTCTCCCGTC 59.426 66.667 16.19 2.57 0.00 4.79
6343 8004 1.492993 AAAGGGGTGTGAGCTCTCCC 61.493 60.000 24.12 24.12 39.57 4.30
6423 8084 7.264221 TGCTTCTGAAACTTTCTTTGCAATAA 58.736 30.769 0.00 0.00 0.00 1.40
6453 8114 3.063861 CAGCGTGTGCAAGCTATTATTCA 59.936 43.478 11.84 0.00 44.04 2.57
6510 8171 0.537371 ACGGCTAACTGCTTGGCTTT 60.537 50.000 0.00 0.00 42.39 3.51
6546 8207 2.503356 AGAGATCAGGTCGCTTTTCCAT 59.497 45.455 0.00 0.00 32.63 3.41
6622 8295 1.001520 CCGATTGGACGTATGGCCATA 59.998 52.381 21.94 21.94 37.49 2.74
6668 8341 2.663119 GCGAATTGGACAAATCAAGTGC 59.337 45.455 1.57 0.00 0.00 4.40
6731 8405 0.850883 ACATGTCCCCAGACCCCAAT 60.851 55.000 0.00 0.00 42.81 3.16
7072 8748 0.041238 TGGATGGAAGAGAGGACGGT 59.959 55.000 0.00 0.00 0.00 4.83
7109 8785 1.407618 CACGAGGTTCGGTCCATATCA 59.592 52.381 3.37 0.00 45.59 2.15
7110 8786 1.269621 CCACGAGGTTCGGTCCATATC 60.270 57.143 3.37 0.00 45.59 1.63
7111 8787 0.750850 CCACGAGGTTCGGTCCATAT 59.249 55.000 3.37 0.00 45.59 1.78
7112 8788 1.952102 GCCACGAGGTTCGGTCCATA 61.952 60.000 0.00 0.00 45.59 2.74
7113 8789 2.978824 CCACGAGGTTCGGTCCAT 59.021 61.111 3.37 0.00 45.59 3.41
7138 8814 2.223456 CCGCAACAACAACAACAGATCA 60.223 45.455 0.00 0.00 0.00 2.92
7143 8819 1.135546 CAGACCGCAACAACAACAACA 60.136 47.619 0.00 0.00 0.00 3.33
7144 8820 1.131504 TCAGACCGCAACAACAACAAC 59.868 47.619 0.00 0.00 0.00 3.32
7145 8821 1.454201 TCAGACCGCAACAACAACAA 58.546 45.000 0.00 0.00 0.00 2.83
7146 8822 1.601903 GATCAGACCGCAACAACAACA 59.398 47.619 0.00 0.00 0.00 3.33
7147 8823 1.873591 AGATCAGACCGCAACAACAAC 59.126 47.619 0.00 0.00 0.00 3.32
7160 8836 2.364002 TGGTGTGTCGTGAAAGATCAGA 59.636 45.455 0.00 0.00 35.88 3.27
7162 8838 2.479837 GTGGTGTGTCGTGAAAGATCA 58.520 47.619 0.00 0.00 0.00 2.92
7186 8862 3.489398 GCGAGAGGTTACTACTGGTGATG 60.489 52.174 0.00 0.00 0.00 3.07
7187 8863 2.688958 GCGAGAGGTTACTACTGGTGAT 59.311 50.000 0.00 0.00 0.00 3.06
7188 8864 2.089980 GCGAGAGGTTACTACTGGTGA 58.910 52.381 0.00 0.00 0.00 4.02
7217 8893 2.541178 CCCTCTACTTCGTGTACATCGC 60.541 54.545 0.00 0.00 0.00 4.58
7260 8936 4.473199 CGTCGTACAGATTGTTTCTCTCA 58.527 43.478 0.00 0.00 29.93 3.27
7317 8993 4.561735 TTAGAAAACCTCTTTGTTGCGG 57.438 40.909 0.00 0.00 35.41 5.69
7382 9086 6.424207 AGTCAATCGAGTCTTTTGTAAAGGTC 59.576 38.462 0.00 0.00 0.00 3.85
7383 9087 6.289064 AGTCAATCGAGTCTTTTGTAAAGGT 58.711 36.000 0.00 0.00 0.00 3.50
7487 11397 7.166691 ACTAGATCAAGTCGGTTTAGCTTAA 57.833 36.000 0.00 0.00 0.00 1.85
7489 11399 5.662674 ACTAGATCAAGTCGGTTTAGCTT 57.337 39.130 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.