Multiple sequence alignment - TraesCS2D01G389200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G389200 chr2D 100.000 8100 0 0 1 8100 495777930 495786029 0.000000e+00 14958.0
1 TraesCS2D01G389200 chr2D 93.962 2037 95 12 5753 7782 496338268 496340283 0.000000e+00 3055.0
2 TraesCS2D01G389200 chr2D 93.250 1689 58 21 3992 5658 496336575 496338229 0.000000e+00 2436.0
3 TraesCS2D01G389200 chr2D 92.266 1306 77 9 1809 3096 496334777 496336076 0.000000e+00 1831.0
4 TraesCS2D01G389200 chr2D 94.664 581 21 2 3426 3997 131459690 131459111 0.000000e+00 893.0
5 TraesCS2D01G389200 chr2D 91.181 635 50 3 1 634 499719255 499718626 0.000000e+00 857.0
6 TraesCS2D01G389200 chr2D 90.610 607 21 11 3426 3997 255685558 255684953 0.000000e+00 773.0
7 TraesCS2D01G389200 chr2D 91.702 470 24 5 1306 1770 496334322 496334781 8.870000e-179 638.0
8 TraesCS2D01G389200 chr2D 94.362 337 12 3 3090 3426 496336263 496336592 2.020000e-140 510.0
9 TraesCS2D01G389200 chr2D 84.247 438 43 15 709 1145 496333905 496334317 3.520000e-108 403.0
10 TraesCS2D01G389200 chr2D 94.767 172 5 1 1140 1307 270843873 270844044 1.730000e-66 265.0
11 TraesCS2D01G389200 chr2D 95.455 132 6 0 3862 3993 273007576 273007707 2.290000e-50 211.0
12 TraesCS2D01G389200 chr2D 94.521 73 3 1 8028 8100 603651342 603651271 2.390000e-20 111.0
13 TraesCS2D01G389200 chr2D 90.323 62 5 1 2469 2529 195991612 195991673 6.740000e-11 80.5
14 TraesCS2D01G389200 chr2D 89.831 59 4 2 1745 1801 560601226 560601168 3.140000e-09 75.0
15 TraesCS2D01G389200 chr2A 96.940 3954 85 22 3992 7921 641394509 641398450 0.000000e+00 6599.0
16 TraesCS2D01G389200 chr2A 97.997 1198 24 0 2229 3426 641393329 641394526 0.000000e+00 2080.0
17 TraesCS2D01G389200 chr2A 97.052 882 14 6 1302 2177 641392461 641393336 0.000000e+00 1474.0
18 TraesCS2D01G389200 chr2A 92.894 577 32 1 3426 3993 57321848 57321272 0.000000e+00 830.0
19 TraesCS2D01G389200 chr2A 92.624 583 25 6 3431 3997 236826675 236827255 0.000000e+00 822.0
20 TraesCS2D01G389200 chr2A 91.939 521 19 7 631 1145 641391959 641392462 0.000000e+00 708.0
21 TraesCS2D01G389200 chr2B 95.928 4077 102 23 3992 8036 583412747 583416791 0.000000e+00 6551.0
22 TraesCS2D01G389200 chr2B 95.182 1619 65 7 1809 3426 583411158 583412764 0.000000e+00 2545.0
23 TraesCS2D01G389200 chr2B 88.080 2089 190 25 5855 7921 583159011 583161062 0.000000e+00 2423.0
24 TraesCS2D01G389200 chr2B 97.886 473 6 4 1302 1770 583410690 583411162 0.000000e+00 815.0
25 TraesCS2D01G389200 chr2B 81.808 929 103 36 2537 3426 583156804 583157705 0.000000e+00 719.0
26 TraesCS2D01G389200 chr2B 87.213 610 64 4 4395 5003 583158121 583158717 0.000000e+00 682.0
27 TraesCS2D01G389200 chr2B 91.624 394 12 12 771 1145 583410300 583410691 7.200000e-145 525.0
28 TraesCS2D01G389200 chr2B 87.903 372 41 3 1306 1673 583155626 583155997 1.250000e-117 435.0
29 TraesCS2D01G389200 chr2B 82.353 357 44 13 1812 2163 583156325 583156667 7.950000e-75 292.0
30 TraesCS2D01G389200 chr7D 92.405 632 44 4 1 631 383312200 383311572 0.000000e+00 898.0
31 TraesCS2D01G389200 chr7D 91.139 632 52 4 1 631 39721817 39722445 0.000000e+00 854.0
32 TraesCS2D01G389200 chr7D 96.933 163 3 1 1143 1303 113883364 113883526 1.040000e-68 272.0
33 TraesCS2D01G389200 chr7D 94.828 174 5 1 1139 1308 32014259 32014432 1.340000e-67 268.0
34 TraesCS2D01G389200 chr7D 94.828 174 4 2 1140 1309 102575936 102576108 4.820000e-67 267.0
35 TraesCS2D01G389200 chr7D 92.982 57 3 1 5460 5515 180249819 180249875 1.870000e-11 82.4
36 TraesCS2D01G389200 chr7D 91.111 45 3 1 2281 2324 26529097 26529141 8.780000e-05 60.2
37 TraesCS2D01G389200 chr3D 94.118 578 25 1 3426 3994 443354806 443355383 0.000000e+00 870.0
38 TraesCS2D01G389200 chr3D 93.997 583 20 6 3426 3997 67479376 67479954 0.000000e+00 869.0
39 TraesCS2D01G389200 chr3D 89.465 636 61 6 1 631 445086602 445087236 0.000000e+00 798.0
40 TraesCS2D01G389200 chr3D 91.566 581 35 7 3426 3993 237832023 237831444 0.000000e+00 789.0
41 TraesCS2D01G389200 chr3D 96.386 166 4 1 1143 1306 14036575 14036410 1.040000e-68 272.0
42 TraesCS2D01G389200 chr3D 94.767 172 4 2 1143 1309 336587998 336588169 6.230000e-66 263.0
43 TraesCS2D01G389200 chr5D 91.153 633 52 4 1 633 386144302 386144930 0.000000e+00 856.0
44 TraesCS2D01G389200 chr5D 89.655 638 56 10 2 633 557623804 557623171 0.000000e+00 804.0
45 TraesCS2D01G389200 chr5D 91.367 278 15 1 3729 3997 7593129 7592852 9.930000e-99 372.0
46 TraesCS2D01G389200 chr5D 97.268 183 5 0 3426 3608 7593311 7593129 2.200000e-80 311.0
47 TraesCS2D01G389200 chr5D 96.914 162 3 1 1144 1303 236945062 236944901 3.730000e-68 270.0
48 TraesCS2D01G389200 chr5D 93.785 177 7 1 1132 1304 438445820 438445996 6.230000e-66 263.0
49 TraesCS2D01G389200 chr5D 94.521 73 4 0 8028 8100 292407954 292408026 6.640000e-21 113.0
50 TraesCS2D01G389200 chr7A 92.943 581 32 1 3426 3997 213820928 213820348 0.000000e+00 837.0
51 TraesCS2D01G389200 chr7A 93.089 246 7 2 3765 4000 409257311 409257556 1.290000e-92 351.0
52 TraesCS2D01G389200 chr7A 95.890 73 3 0 8028 8100 126927309 126927381 1.430000e-22 119.0
53 TraesCS2D01G389200 chr7A 77.841 176 25 7 2387 2549 532466875 532466701 6.690000e-16 97.1
54 TraesCS2D01G389200 chr7A 94.444 36 2 0 2279 2314 702624329 702624294 1.000000e-03 56.5
55 TraesCS2D01G389200 chr6D 89.639 637 61 5 1 634 470686453 470685819 0.000000e+00 806.0
56 TraesCS2D01G389200 chr6D 89.515 639 58 7 1 631 107937160 107936523 0.000000e+00 800.0
57 TraesCS2D01G389200 chr6D 94.737 171 5 1 1140 1306 472748229 472748059 6.230000e-66 263.0
58 TraesCS2D01G389200 chr6D 98.529 68 1 0 8033 8100 20913645 20913578 3.970000e-23 121.0
59 TraesCS2D01G389200 chr6D 95.890 73 3 0 8028 8100 455718107 455718035 1.430000e-22 119.0
60 TraesCS2D01G389200 chr6D 97.059 68 2 0 8033 8100 265667799 265667866 1.850000e-21 115.0
61 TraesCS2D01G389200 chr6D 97.059 68 2 0 8033 8100 283850901 283850968 1.850000e-21 115.0
62 TraesCS2D01G389200 chr6D 97.059 68 2 0 8033 8100 350747994 350747927 1.850000e-21 115.0
63 TraesCS2D01G389200 chr6D 97.059 68 2 0 8033 8100 377642886 377642953 1.850000e-21 115.0
64 TraesCS2D01G389200 chr6D 95.588 68 3 0 8033 8100 144745026 144745093 8.590000e-20 110.0
65 TraesCS2D01G389200 chr6D 95.588 68 2 1 8033 8100 435694789 435694723 3.090000e-19 108.0
66 TraesCS2D01G389200 chr1D 90.260 616 55 5 1 614 399775249 399774637 0.000000e+00 800.0
67 TraesCS2D01G389200 chr1D 97.059 68 2 0 8033 8100 295568316 295568383 1.850000e-21 115.0
68 TraesCS2D01G389200 chr1D 97.059 68 2 0 8033 8100 342942256 342942189 1.850000e-21 115.0
69 TraesCS2D01G389200 chr1D 94.521 73 4 0 8028 8100 458575585 458575657 6.640000e-21 113.0
70 TraesCS2D01G389200 chr1D 100.000 30 0 0 2481 2510 293296419 293296390 1.000000e-03 56.5
71 TraesCS2D01G389200 chr5B 91.696 578 36 5 3426 3993 531822462 531823037 0.000000e+00 791.0
72 TraesCS2D01G389200 chr5B 92.308 52 1 3 1751 1800 465867768 465867818 4.060000e-08 71.3
73 TraesCS2D01G389200 chr5B 92.857 42 3 0 2281 2322 123203290 123203331 2.440000e-05 62.1
74 TraesCS2D01G389200 chr5B 100.000 28 0 0 2281 2308 492545356 492545383 1.500000e-02 52.8
75 TraesCS2D01G389200 chr3A 91.222 581 40 3 3426 3997 380874514 380875092 0.000000e+00 780.0
76 TraesCS2D01G389200 chr3A 97.561 41 1 0 1763 1803 36477573 36477613 4.060000e-08 71.3
77 TraesCS2D01G389200 chr3A 100.000 37 0 0 597 633 15325771 15325807 1.460000e-07 69.4
78 TraesCS2D01G389200 chr3A 91.837 49 2 2 1754 1801 616953726 616953679 5.250000e-07 67.6
79 TraesCS2D01G389200 chr3A 92.500 40 1 2 2280 2317 403405246 403405207 1.000000e-03 56.5
80 TraesCS2D01G389200 chr3A 92.500 40 1 2 2280 2317 403406388 403406349 1.000000e-03 56.5
81 TraesCS2D01G389200 chr4D 81.583 581 94 4 3426 3993 235499513 235500093 1.230000e-127 468.0
82 TraesCS2D01G389200 chr4D 84.483 116 17 1 1327 1441 70358953 70358838 6.640000e-21 113.0
83 TraesCS2D01G389200 chr4D 95.588 68 3 0 8033 8100 246809171 246809238 8.590000e-20 110.0
84 TraesCS2D01G389200 chr4D 94.118 68 4 0 8033 8100 119051225 119051158 4.000000e-18 104.0
85 TraesCS2D01G389200 chr4D 92.754 69 5 0 8032 8100 489440953 489441021 5.170000e-17 100.0
86 TraesCS2D01G389200 chr4D 85.882 85 6 6 8020 8100 404113616 404113698 1.450000e-12 86.1
87 TraesCS2D01G389200 chr1A 91.626 203 5 5 3804 3996 517097731 517097531 3.730000e-68 270.0
88 TraesCS2D01G389200 chr1A 84.810 79 9 3 2281 2358 23615739 23615815 8.720000e-10 76.8
89 TraesCS2D01G389200 chr1A 88.679 53 3 2 1751 1803 109423099 109423050 2.440000e-05 62.1
90 TraesCS2D01G389200 chr7B 94.231 156 3 4 3842 3993 472241484 472241637 4.890000e-57 233.0
91 TraesCS2D01G389200 chr7B 89.552 67 5 2 5451 5515 146080692 146080758 5.210000e-12 84.2
92 TraesCS2D01G389200 chr4A 84.685 111 17 0 1331 1441 523455704 523455594 2.390000e-20 111.0
93 TraesCS2D01G389200 chr4A 90.909 66 6 0 2471 2536 465406641 465406706 1.120000e-13 89.8
94 TraesCS2D01G389200 chr4A 93.478 46 1 2 1759 1803 139128368 139128324 5.250000e-07 67.6
95 TraesCS2D01G389200 chr4A 90.196 51 3 2 1754 1803 93977306 93977257 1.890000e-06 65.8
96 TraesCS2D01G389200 chrUn 92.424 66 5 0 8035 8100 222975854 222975789 2.410000e-15 95.3
97 TraesCS2D01G389200 chrUn 92.424 66 5 0 8035 8100 294248022 294247957 2.410000e-15 95.3
98 TraesCS2D01G389200 chrUn 92.424 66 5 0 8035 8100 303647988 303647923 2.410000e-15 95.3
99 TraesCS2D01G389200 chrUn 92.424 66 5 0 8035 8100 345847643 345847578 2.410000e-15 95.3
100 TraesCS2D01G389200 chrUn 91.304 69 4 2 8032 8099 22763203 22763136 8.660000e-15 93.5
101 TraesCS2D01G389200 chrUn 89.189 74 8 0 8027 8100 144779467 144779394 8.660000e-15 93.5
102 TraesCS2D01G389200 chrUn 92.424 66 4 1 8035 8100 479544682 479544618 8.660000e-15 93.5
103 TraesCS2D01G389200 chrUn 91.045 67 6 0 8034 8100 110002904 110002970 3.110000e-14 91.6
104 TraesCS2D01G389200 chrUn 90.909 66 6 0 8035 8100 12068892 12068827 1.120000e-13 89.8
105 TraesCS2D01G389200 chr1B 80.882 136 13 7 2387 2509 198640438 198640303 2.410000e-15 95.3
106 TraesCS2D01G389200 chr1B 97.297 37 1 0 2479 2515 394192769 394192733 6.790000e-06 63.9
107 TraesCS2D01G389200 chr1B 97.297 37 1 0 2479 2515 394277458 394277422 6.790000e-06 63.9
108 TraesCS2D01G389200 chr4B 89.394 66 7 0 2471 2536 172508727 172508662 5.210000e-12 84.2
109 TraesCS2D01G389200 chr6A 97.619 42 0 1 1763 1803 101983192 101983151 4.060000e-08 71.3
110 TraesCS2D01G389200 chr6A 95.455 44 2 0 2473 2516 586851993 586852036 4.060000e-08 71.3
111 TraesCS2D01G389200 chr6B 90.476 42 3 1 2281 2322 506711174 506711214 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G389200 chr2D 495777930 495786029 8099 False 14958.000000 14958 100.0000 1 8100 1 chr2D.!!$F4 8099
1 TraesCS2D01G389200 chr2D 496333905 496340283 6378 False 1478.833333 3055 91.6315 709 7782 6 chr2D.!!$F5 7073
2 TraesCS2D01G389200 chr2D 131459111 131459690 579 True 893.000000 893 94.6640 3426 3997 1 chr2D.!!$R1 571
3 TraesCS2D01G389200 chr2D 499718626 499719255 629 True 857.000000 857 91.1810 1 634 1 chr2D.!!$R3 633
4 TraesCS2D01G389200 chr2D 255684953 255685558 605 True 773.000000 773 90.6100 3426 3997 1 chr2D.!!$R2 571
5 TraesCS2D01G389200 chr2A 641391959 641398450 6491 False 2715.250000 6599 95.9820 631 7921 4 chr2A.!!$F2 7290
6 TraesCS2D01G389200 chr2A 57321272 57321848 576 True 830.000000 830 92.8940 3426 3993 1 chr2A.!!$R1 567
7 TraesCS2D01G389200 chr2A 236826675 236827255 580 False 822.000000 822 92.6240 3431 3997 1 chr2A.!!$F1 566
8 TraesCS2D01G389200 chr2B 583410300 583416791 6491 False 2609.000000 6551 95.1550 771 8036 4 chr2B.!!$F2 7265
9 TraesCS2D01G389200 chr2B 583155626 583161062 5436 False 910.200000 2423 85.4714 1306 7921 5 chr2B.!!$F1 6615
10 TraesCS2D01G389200 chr7D 383311572 383312200 628 True 898.000000 898 92.4050 1 631 1 chr7D.!!$R1 630
11 TraesCS2D01G389200 chr7D 39721817 39722445 628 False 854.000000 854 91.1390 1 631 1 chr7D.!!$F3 630
12 TraesCS2D01G389200 chr3D 443354806 443355383 577 False 870.000000 870 94.1180 3426 3994 1 chr3D.!!$F3 568
13 TraesCS2D01G389200 chr3D 67479376 67479954 578 False 869.000000 869 93.9970 3426 3997 1 chr3D.!!$F1 571
14 TraesCS2D01G389200 chr3D 445086602 445087236 634 False 798.000000 798 89.4650 1 631 1 chr3D.!!$F4 630
15 TraesCS2D01G389200 chr3D 237831444 237832023 579 True 789.000000 789 91.5660 3426 3993 1 chr3D.!!$R2 567
16 TraesCS2D01G389200 chr5D 386144302 386144930 628 False 856.000000 856 91.1530 1 633 1 chr5D.!!$F2 632
17 TraesCS2D01G389200 chr5D 557623171 557623804 633 True 804.000000 804 89.6550 2 633 1 chr5D.!!$R2 631
18 TraesCS2D01G389200 chr7A 213820348 213820928 580 True 837.000000 837 92.9430 3426 3997 1 chr7A.!!$R1 571
19 TraesCS2D01G389200 chr6D 470685819 470686453 634 True 806.000000 806 89.6390 1 634 1 chr6D.!!$R6 633
20 TraesCS2D01G389200 chr6D 107936523 107937160 637 True 800.000000 800 89.5150 1 631 1 chr6D.!!$R2 630
21 TraesCS2D01G389200 chr1D 399774637 399775249 612 True 800.000000 800 90.2600 1 614 1 chr1D.!!$R3 613
22 TraesCS2D01G389200 chr5B 531822462 531823037 575 False 791.000000 791 91.6960 3426 3993 1 chr5B.!!$F4 567
23 TraesCS2D01G389200 chr3A 380874514 380875092 578 False 780.000000 780 91.2220 3426 3997 1 chr3A.!!$F3 571
24 TraesCS2D01G389200 chr4D 235499513 235500093 580 False 468.000000 468 81.5830 3426 3993 1 chr4D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 614 0.038892 GTCGACCTAAACAGACGGCA 60.039 55.000 3.51 0.0 0.0 5.69 F
2189 2437 0.106149 GGCTATGTCCAGGGGTAACG 59.894 60.000 0.00 0.0 37.6 3.18 F
2190 2438 1.117150 GCTATGTCCAGGGGTAACGA 58.883 55.000 0.00 0.0 37.6 3.85 F
2191 2439 1.692519 GCTATGTCCAGGGGTAACGAT 59.307 52.381 0.00 0.0 37.6 3.73 F
3334 3920 2.053244 CCATTGCCTAGGTCCTCTGAT 58.947 52.381 11.31 0.0 0.0 2.90 F
5089 5812 0.187361 CCCCCAGTGACCTTTCCAAA 59.813 55.000 0.00 0.0 0.0 3.28 F
6449 7213 0.868406 GCAACGGAGAACTTCAGTGG 59.132 55.000 0.00 0.0 34.3 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2471 0.112995 TGAGCTCCATTGCCCTTGTT 59.887 50.000 12.15 0.0 0.00 2.83 R
3409 3995 0.171903 GCGCATTGGCTGTGAATTCT 59.828 50.000 0.30 0.0 37.57 2.40 R
3410 3996 0.803380 GGCGCATTGGCTGTGAATTC 60.803 55.000 10.83 0.0 40.72 2.17 R
3903 4531 1.153628 CCTAGGAGGCGGTTTCACG 60.154 63.158 1.05 0.0 0.00 4.35 R
5333 6068 0.035152 TGCCACCAATAGCAGTGAGG 60.035 55.000 0.00 0.0 36.01 3.86 R
6925 7691 1.002011 GGGCTGGAGAAACAGGGTC 60.002 63.158 0.00 0.0 38.90 4.46 R
7785 8556 1.073897 GTTCAGGAACCTGGCTGCT 59.926 57.895 18.99 0.0 43.75 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 4.760047 AGCTTGCGGGCGTCGAAT 62.760 61.111 0.00 0.00 42.43 3.34
124 126 2.608988 ACCAGCTAGCTGCCCTGT 60.609 61.111 34.82 24.91 44.23 4.00
319 329 2.653702 GACAGCTGGCAGAGTCGT 59.346 61.111 20.86 8.48 0.00 4.34
376 388 2.281484 GGCGAGGGTTGCTGTTGA 60.281 61.111 0.00 0.00 0.00 3.18
381 399 0.890996 GAGGGTTGCTGTTGACTGGG 60.891 60.000 0.00 0.00 0.00 4.45
382 400 1.150536 GGGTTGCTGTTGACTGGGA 59.849 57.895 0.00 0.00 0.00 4.37
498 517 0.614415 ATCCGGCTCAAAAATGGGCA 60.614 50.000 0.00 0.00 0.00 5.36
577 596 3.036084 CGCTCTTTGTGTCCGCGT 61.036 61.111 4.92 0.00 39.07 6.01
583 602 3.141522 TTTGTGTCCGCGTCGACCT 62.142 57.895 10.58 0.00 31.35 3.85
588 607 1.081242 GTCCGCGTCGACCTAAACA 60.081 57.895 10.58 0.00 0.00 2.83
595 614 0.038892 GTCGACCTAAACAGACGGCA 60.039 55.000 3.51 0.00 0.00 5.69
652 671 9.965748 GCTCTAATAGATCTGAATTATTTTCGC 57.034 33.333 5.18 0.00 0.00 4.70
709 728 1.291877 CCCTACGTGCTGTGTGCTTC 61.292 60.000 0.00 0.00 43.37 3.86
793 812 2.044053 ATGGCCGGTGTGGGAATG 60.044 61.111 1.90 0.00 38.63 2.67
812 840 1.431243 TGAAGGTGGGCAATTAAGGGT 59.569 47.619 0.00 0.00 0.00 4.34
835 863 1.342975 GGGGGCCTCCATTGTGTTTAT 60.343 52.381 20.04 0.00 37.22 1.40
874 907 2.297701 GCTCCACACAAGAGAAAACCA 58.702 47.619 0.00 0.00 32.86 3.67
1017 1056 1.217585 CGATGCCACCTCGTGCTATG 61.218 60.000 0.00 0.00 31.34 2.23
1143 1184 1.489481 TGATGACCAGCTTCCGATCT 58.511 50.000 0.00 0.00 0.00 2.75
1144 1185 2.666317 TGATGACCAGCTTCCGATCTA 58.334 47.619 0.00 0.00 0.00 1.98
1145 1186 2.362397 TGATGACCAGCTTCCGATCTAC 59.638 50.000 0.00 0.00 0.00 2.59
1146 1187 2.145397 TGACCAGCTTCCGATCTACT 57.855 50.000 0.00 0.00 0.00 2.57
1147 1188 2.025155 TGACCAGCTTCCGATCTACTC 58.975 52.381 0.00 0.00 0.00 2.59
1148 1189 1.338655 GACCAGCTTCCGATCTACTCC 59.661 57.143 0.00 0.00 0.00 3.85
1149 1190 0.676736 CCAGCTTCCGATCTACTCCC 59.323 60.000 0.00 0.00 0.00 4.30
1150 1191 1.698506 CAGCTTCCGATCTACTCCCT 58.301 55.000 0.00 0.00 0.00 4.20
1151 1192 1.611491 CAGCTTCCGATCTACTCCCTC 59.389 57.143 0.00 0.00 0.00 4.30
1152 1193 0.963225 GCTTCCGATCTACTCCCTCC 59.037 60.000 0.00 0.00 0.00 4.30
1153 1194 1.623163 CTTCCGATCTACTCCCTCCC 58.377 60.000 0.00 0.00 0.00 4.30
1154 1195 1.146152 CTTCCGATCTACTCCCTCCCT 59.854 57.143 0.00 0.00 0.00 4.20
1155 1196 1.232909 TCCGATCTACTCCCTCCCTT 58.767 55.000 0.00 0.00 0.00 3.95
1156 1197 1.145325 TCCGATCTACTCCCTCCCTTC 59.855 57.143 0.00 0.00 0.00 3.46
1157 1198 1.623163 CGATCTACTCCCTCCCTTCC 58.377 60.000 0.00 0.00 0.00 3.46
1158 1199 1.146152 CGATCTACTCCCTCCCTTCCT 59.854 57.143 0.00 0.00 0.00 3.36
1159 1200 2.375845 CGATCTACTCCCTCCCTTCCTA 59.624 54.545 0.00 0.00 0.00 2.94
1160 1201 3.181431 CGATCTACTCCCTCCCTTCCTAA 60.181 52.174 0.00 0.00 0.00 2.69
1161 1202 4.691935 CGATCTACTCCCTCCCTTCCTAAA 60.692 50.000 0.00 0.00 0.00 1.85
1162 1203 4.920781 TCTACTCCCTCCCTTCCTAAAT 57.079 45.455 0.00 0.00 0.00 1.40
1163 1204 6.562845 ATCTACTCCCTCCCTTCCTAAATA 57.437 41.667 0.00 0.00 0.00 1.40
1164 1205 5.713807 TCTACTCCCTCCCTTCCTAAATAC 58.286 45.833 0.00 0.00 0.00 1.89
1165 1206 4.645968 ACTCCCTCCCTTCCTAAATACT 57.354 45.455 0.00 0.00 0.00 2.12
1166 1207 4.974194 ACTCCCTCCCTTCCTAAATACTT 58.026 43.478 0.00 0.00 0.00 2.24
1167 1208 4.722279 ACTCCCTCCCTTCCTAAATACTTG 59.278 45.833 0.00 0.00 0.00 3.16
1168 1209 4.706616 TCCCTCCCTTCCTAAATACTTGT 58.293 43.478 0.00 0.00 0.00 3.16
1169 1210 4.720273 TCCCTCCCTTCCTAAATACTTGTC 59.280 45.833 0.00 0.00 0.00 3.18
1170 1211 4.722279 CCCTCCCTTCCTAAATACTTGTCT 59.278 45.833 0.00 0.00 0.00 3.41
1171 1212 5.191921 CCCTCCCTTCCTAAATACTTGTCTT 59.808 44.000 0.00 0.00 0.00 3.01
1172 1213 6.297068 CCCTCCCTTCCTAAATACTTGTCTTT 60.297 42.308 0.00 0.00 0.00 2.52
1173 1214 7.175797 CCTCCCTTCCTAAATACTTGTCTTTT 58.824 38.462 0.00 0.00 0.00 2.27
1174 1215 7.670140 CCTCCCTTCCTAAATACTTGTCTTTTT 59.330 37.037 0.00 0.00 0.00 1.94
1175 1216 9.734984 CTCCCTTCCTAAATACTTGTCTTTTTA 57.265 33.333 0.00 0.00 0.00 1.52
1176 1217 9.734984 TCCCTTCCTAAATACTTGTCTTTTTAG 57.265 33.333 0.00 0.00 33.47 1.85
1177 1218 8.957466 CCCTTCCTAAATACTTGTCTTTTTAGG 58.043 37.037 12.11 12.11 46.30 2.69
1178 1219 8.459635 CCTTCCTAAATACTTGTCTTTTTAGGC 58.540 37.037 13.09 0.00 45.31 3.93
1179 1220 8.927675 TTCCTAAATACTTGTCTTTTTAGGCA 57.072 30.769 13.09 2.93 45.31 4.75
1180 1221 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
1181 1222 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
1188 1229 8.369218 ACTTGTCTTTTTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32
1189 1230 8.203485 ACTTGTCTTTTTAGGCATTTCAAATGA 58.797 29.630 14.65 0.00 0.00 2.57
1190 1231 8.954950 TTGTCTTTTTAGGCATTTCAAATGAA 57.045 26.923 14.65 0.00 0.00 2.57
1191 1232 9.558396 TTGTCTTTTTAGGCATTTCAAATGAAT 57.442 25.926 14.65 3.70 33.54 2.57
1201 1242 8.077991 AGGCATTTCAAATGAATATCACATACG 58.922 33.333 14.65 0.00 33.54 3.06
1202 1243 7.326789 GGCATTTCAAATGAATATCACATACGG 59.673 37.037 14.65 0.00 33.54 4.02
1203 1244 8.075574 GCATTTCAAATGAATATCACATACGGA 58.924 33.333 14.65 0.00 33.54 4.69
1206 1247 9.119418 TTTCAAATGAATATCACATACGGATGT 57.881 29.630 7.68 7.68 39.20 3.06
1207 1248 9.771534 TTCAAATGAATATCACATACGGATGTA 57.228 29.630 14.23 0.00 44.82 2.29
1208 1249 9.942850 TCAAATGAATATCACATACGGATGTAT 57.057 29.630 14.23 10.02 44.82 2.29
1222 1263 8.865420 ATACGGATGTATGTAGACATTAGAGT 57.135 34.615 0.00 0.00 40.18 3.24
1223 1264 6.971602 ACGGATGTATGTAGACATTAGAGTG 58.028 40.000 0.00 0.00 40.18 3.51
1224 1265 6.546403 ACGGATGTATGTAGACATTAGAGTGT 59.454 38.462 0.00 0.00 40.18 3.55
1225 1266 7.718314 ACGGATGTATGTAGACATTAGAGTGTA 59.282 37.037 0.00 0.00 40.18 2.90
1226 1267 8.231161 CGGATGTATGTAGACATTAGAGTGTAG 58.769 40.741 0.00 0.00 40.18 2.74
1227 1268 9.286170 GGATGTATGTAGACATTAGAGTGTAGA 57.714 37.037 0.00 0.00 40.18 2.59
1244 1285 9.606631 AGAGTGTAGATTCATTCATTTTACTCC 57.393 33.333 0.00 0.00 32.34 3.85
1245 1286 8.425577 AGTGTAGATTCATTCATTTTACTCCG 57.574 34.615 0.00 0.00 0.00 4.63
1246 1287 8.041323 AGTGTAGATTCATTCATTTTACTCCGT 58.959 33.333 0.00 0.00 0.00 4.69
1247 1288 9.309516 GTGTAGATTCATTCATTTTACTCCGTA 57.690 33.333 0.00 0.00 0.00 4.02
1250 1291 8.964476 AGATTCATTCATTTTACTCCGTATGT 57.036 30.769 0.00 0.00 0.00 2.29
1253 1294 9.832445 ATTCATTCATTTTACTCCGTATGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
1254 1295 8.867112 TCATTCATTTTACTCCGTATGTAGTC 57.133 34.615 0.00 0.00 0.00 2.59
1255 1296 8.471609 TCATTCATTTTACTCCGTATGTAGTCA 58.528 33.333 0.00 0.00 0.00 3.41
1256 1297 8.540492 CATTCATTTTACTCCGTATGTAGTCAC 58.460 37.037 0.00 0.00 0.00 3.67
1257 1298 7.400599 TCATTTTACTCCGTATGTAGTCACT 57.599 36.000 0.00 0.00 0.00 3.41
1258 1299 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
1259 1300 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
1260 1301 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
1261 1302 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
1262 1303 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
1263 1304 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
1264 1305 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
1265 1306 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1266 1307 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1267 1308 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1268 1309 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1269 1310 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1270 1311 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1271 1312 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1272 1313 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1273 1314 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1274 1315 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1275 1316 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1276 1317 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1277 1318 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1278 1319 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1279 1320 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
1280 1321 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
1281 1322 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
1282 1323 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
1283 1324 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
1284 1325 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
1285 1326 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
1286 1327 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1287 1328 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1289 1330 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1290 1331 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1291 1332 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1292 1333 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1293 1334 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1294 1335 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1295 1336 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1296 1337 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1297 1338 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1298 1339 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1299 1340 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1300 1341 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1462 1505 0.533491 TGTCCCGATTGAAGGTACCG 59.467 55.000 6.18 0.00 0.00 4.02
1864 2109 5.067283 AGTCGCTGTACAAATTTTCCACTTT 59.933 36.000 0.00 0.00 0.00 2.66
1974 2219 3.248266 GTTTTCATCACTCTGCATTGGC 58.752 45.455 0.00 0.00 41.68 4.52
2159 2407 7.180051 CCCCTCAGCATCTTCTCTTAGTATAAT 59.820 40.741 0.00 0.00 0.00 1.28
2174 2422 8.685311 TCTTAGTATAATAGAGAAAGGGGGCTA 58.315 37.037 0.00 0.00 0.00 3.93
2175 2423 9.495382 CTTAGTATAATAGAGAAAGGGGGCTAT 57.505 37.037 0.00 0.00 0.00 2.97
2176 2424 7.741554 AGTATAATAGAGAAAGGGGGCTATG 57.258 40.000 0.00 0.00 0.00 2.23
2177 2425 7.257146 AGTATAATAGAGAAAGGGGGCTATGT 58.743 38.462 0.00 0.00 0.00 2.29
2178 2426 4.984146 AATAGAGAAAGGGGGCTATGTC 57.016 45.455 0.00 0.00 0.00 3.06
2179 2427 1.512735 AGAGAAAGGGGGCTATGTCC 58.487 55.000 0.00 0.00 0.00 4.02
2180 2428 1.213296 GAGAAAGGGGGCTATGTCCA 58.787 55.000 0.00 0.00 0.00 4.02
2181 2429 1.141858 GAGAAAGGGGGCTATGTCCAG 59.858 57.143 0.00 0.00 0.00 3.86
2182 2430 0.183731 GAAAGGGGGCTATGTCCAGG 59.816 60.000 0.00 0.00 0.00 4.45
2183 2431 1.289244 AAAGGGGGCTATGTCCAGGG 61.289 60.000 0.00 0.00 0.00 4.45
2184 2432 3.178611 GGGGGCTATGTCCAGGGG 61.179 72.222 0.00 0.00 0.00 4.79
2185 2433 2.368329 GGGGCTATGTCCAGGGGT 60.368 66.667 0.00 0.00 0.00 4.95
2186 2434 1.074014 GGGGCTATGTCCAGGGGTA 60.074 63.158 0.00 0.00 0.00 3.69
2187 2435 0.696485 GGGGCTATGTCCAGGGGTAA 60.696 60.000 0.00 0.00 0.00 2.85
2188 2436 0.472898 GGGCTATGTCCAGGGGTAAC 59.527 60.000 0.00 0.00 0.00 2.50
2189 2437 0.106149 GGCTATGTCCAGGGGTAACG 59.894 60.000 0.00 0.00 37.60 3.18
2190 2438 1.117150 GCTATGTCCAGGGGTAACGA 58.883 55.000 0.00 0.00 37.60 3.85
2191 2439 1.692519 GCTATGTCCAGGGGTAACGAT 59.307 52.381 0.00 0.00 37.60 3.73
2192 2440 2.895404 GCTATGTCCAGGGGTAACGATA 59.105 50.000 0.00 0.00 37.60 2.92
2193 2441 3.514309 GCTATGTCCAGGGGTAACGATAT 59.486 47.826 0.00 0.00 37.60 1.63
2194 2442 4.020485 GCTATGTCCAGGGGTAACGATATT 60.020 45.833 0.00 0.00 37.60 1.28
2195 2443 5.186409 GCTATGTCCAGGGGTAACGATATTA 59.814 44.000 0.00 0.00 37.60 0.98
2196 2444 6.127140 GCTATGTCCAGGGGTAACGATATTAT 60.127 42.308 0.00 0.00 37.60 1.28
2197 2445 5.733620 TGTCCAGGGGTAACGATATTATC 57.266 43.478 0.00 0.00 37.60 1.75
2198 2446 5.149239 TGTCCAGGGGTAACGATATTATCA 58.851 41.667 4.63 0.00 37.60 2.15
2199 2447 5.783360 TGTCCAGGGGTAACGATATTATCAT 59.217 40.000 4.63 0.00 37.60 2.45
2200 2448 6.271391 TGTCCAGGGGTAACGATATTATCATT 59.729 38.462 4.63 0.00 37.60 2.57
2201 2449 7.166167 GTCCAGGGGTAACGATATTATCATTT 58.834 38.462 4.63 0.00 37.60 2.32
2202 2450 7.664318 GTCCAGGGGTAACGATATTATCATTTT 59.336 37.037 4.63 0.00 37.60 1.82
2203 2451 8.221944 TCCAGGGGTAACGATATTATCATTTTT 58.778 33.333 4.63 0.00 37.60 1.94
2229 2477 8.545229 TGACATGCCATTATTTTTAAACAAGG 57.455 30.769 0.00 0.00 0.00 3.61
2230 2478 7.605691 TGACATGCCATTATTTTTAAACAAGGG 59.394 33.333 0.00 0.00 0.00 3.95
2231 2479 6.374053 ACATGCCATTATTTTTAAACAAGGGC 59.626 34.615 13.29 13.29 38.16 5.19
2232 2480 5.869579 TGCCATTATTTTTAAACAAGGGCA 58.130 33.333 17.54 17.54 44.63 5.36
2523 2870 5.299028 TGCCTAATATTGACGTGCATTTCAT 59.701 36.000 0.00 0.00 0.00 2.57
3334 3920 2.053244 CCATTGCCTAGGTCCTCTGAT 58.947 52.381 11.31 0.00 0.00 2.90
3344 3930 3.312890 AGGTCCTCTGATCCATAACCAG 58.687 50.000 0.00 0.00 0.00 4.00
3542 4128 2.426023 GTCCCTTGTGCGACCAGT 59.574 61.111 0.00 0.00 0.00 4.00
3776 4368 4.392047 ACACAGAAATGACTGCATCTTCA 58.608 39.130 0.00 0.00 41.06 3.02
4018 4653 8.752187 AGAATTCACAGCCAATGTTTATGTTAT 58.248 29.630 8.44 0.00 41.41 1.89
5086 5809 0.840722 TCTCCCCCAGTGACCTTTCC 60.841 60.000 0.00 0.00 0.00 3.13
5087 5810 1.073319 TCCCCCAGTGACCTTTCCA 60.073 57.895 0.00 0.00 0.00 3.53
5088 5811 0.699577 TCCCCCAGTGACCTTTCCAA 60.700 55.000 0.00 0.00 0.00 3.53
5089 5812 0.187361 CCCCCAGTGACCTTTCCAAA 59.813 55.000 0.00 0.00 0.00 3.28
5090 5813 1.412361 CCCCCAGTGACCTTTCCAAAA 60.412 52.381 0.00 0.00 0.00 2.44
5091 5814 2.393646 CCCCAGTGACCTTTCCAAAAA 58.606 47.619 0.00 0.00 0.00 1.94
5333 6068 7.440856 CCCATCTCTGAAGACTTAAATTCTAGC 59.559 40.741 0.00 0.00 33.32 3.42
5404 6139 7.703755 AGGTTTCTCTCTTGGATCCTTATTTT 58.296 34.615 14.23 0.00 0.00 1.82
5789 6530 2.901192 TGTCCCTGTTTCCTTATCGTCA 59.099 45.455 0.00 0.00 0.00 4.35
5814 6569 2.158841 CGGTGTTTCATCGGTAGTTTGG 59.841 50.000 0.00 0.00 34.00 3.28
6449 7213 0.868406 GCAACGGAGAACTTCAGTGG 59.132 55.000 0.00 0.00 34.30 4.00
6504 7268 9.595823 GGACGTGTATATAAAGGCATTATACAT 57.404 33.333 8.07 0.00 38.86 2.29
6925 7691 5.633830 AGATCTGCAACTTTGGTATGTTG 57.366 39.130 0.00 0.00 44.33 3.33
6994 7760 2.147387 GCCATACCTGGACCCGGAT 61.147 63.158 9.25 0.00 46.37 4.18
7063 7829 4.358214 TGGGTGTTATCATCCTGTGTCTA 58.642 43.478 4.73 0.00 44.67 2.59
7069 7835 6.480320 GTGTTATCATCCTGTGTCTATTGACC 59.520 42.308 4.82 0.00 42.28 4.02
7097 7863 3.690460 CCTCCCTTGACTATTGCAAAGT 58.310 45.455 1.71 8.60 0.00 2.66
7340 8107 1.462616 TACAGGAAGTTACGCGCCTA 58.537 50.000 5.73 0.00 0.00 3.93
7361 8128 7.415095 CGCCTAATCACTTGATTTGTCCAATTA 60.415 37.037 9.68 0.00 41.64 1.40
7550 8321 8.815565 TTTTCTTGGAGTGGTTATAATGCATA 57.184 30.769 0.00 0.00 0.00 3.14
7718 8489 1.355971 GATGACGAACTTGCCGCTAA 58.644 50.000 0.00 0.00 0.00 3.09
7785 8556 3.196469 CAGGAGTACCTTGATCAGCAGAA 59.804 47.826 0.00 0.00 45.36 3.02
7850 8629 9.548631 AGGGCTGTATCTATATGTATAACTTGT 57.451 33.333 0.00 0.00 0.00 3.16
7887 8666 0.442310 CATGCCGTGACCAGTTTACG 59.558 55.000 0.00 0.00 37.55 3.18
7895 8674 3.910767 CGTGACCAGTTTACGTCTAGTTC 59.089 47.826 0.00 0.00 33.48 3.01
7916 8695 7.521529 AGTTCATCTTGTTATGTTCACAATCG 58.478 34.615 0.00 0.00 33.67 3.34
7931 8710 2.024655 ACAATCGGTAGTACTCCCTCCA 60.025 50.000 0.00 0.00 0.00 3.86
7935 8714 1.822457 CGGTAGTACTCCCTCCATCCC 60.822 61.905 0.00 0.00 0.00 3.85
7946 8725 2.487265 CCCTCCATCCCGAATTAGTTGG 60.487 54.545 0.00 0.00 0.00 3.77
7970 8749 5.009210 GCTCAGATTTGTCTAGATACGGACT 59.991 44.000 0.00 0.00 34.01 3.85
7971 8750 6.205076 GCTCAGATTTGTCTAGATACGGACTA 59.795 42.308 0.00 0.00 34.01 2.59
7972 8751 7.094549 GCTCAGATTTGTCTAGATACGGACTAT 60.095 40.741 0.00 0.00 34.01 2.12
7973 8752 8.325421 TCAGATTTGTCTAGATACGGACTATC 57.675 38.462 0.00 0.00 34.01 2.08
7974 8753 7.937394 TCAGATTTGTCTAGATACGGACTATCA 59.063 37.037 0.00 0.00 34.59 2.15
7997 8777 4.210331 AGACACATTTGAGGGAATATGCC 58.790 43.478 0.00 0.00 0.00 4.40
8002 8782 0.819259 TTGAGGGAATATGCCGCAGC 60.819 55.000 0.00 0.00 39.02 5.25
8014 8794 1.312815 GCCGCAGCAAGGATTAATCT 58.687 50.000 14.95 0.00 39.53 2.40
8038 8818 9.909644 TCTTGTTAAGTTGACAATCTACTACTC 57.090 33.333 13.02 0.00 36.51 2.59
8039 8819 9.141400 CTTGTTAAGTTGACAATCTACTACTCC 57.859 37.037 13.02 0.00 36.51 3.85
8040 8820 7.609056 TGTTAAGTTGACAATCTACTACTCCC 58.391 38.462 0.00 0.00 31.52 4.30
8041 8821 7.453752 TGTTAAGTTGACAATCTACTACTCCCT 59.546 37.037 0.00 0.00 31.52 4.20
8042 8822 6.532988 AAGTTGACAATCTACTACTCCCTC 57.467 41.667 0.00 0.00 31.52 4.30
8043 8823 4.957327 AGTTGACAATCTACTACTCCCTCC 59.043 45.833 0.00 0.00 30.99 4.30
8044 8824 4.603094 TGACAATCTACTACTCCCTCCA 57.397 45.455 0.00 0.00 0.00 3.86
8045 8825 5.144159 TGACAATCTACTACTCCCTCCAT 57.856 43.478 0.00 0.00 0.00 3.41
8046 8826 5.141182 TGACAATCTACTACTCCCTCCATC 58.859 45.833 0.00 0.00 0.00 3.51
8047 8827 4.484912 ACAATCTACTACTCCCTCCATCC 58.515 47.826 0.00 0.00 0.00 3.51
8048 8828 3.835395 CAATCTACTACTCCCTCCATCCC 59.165 52.174 0.00 0.00 0.00 3.85
8049 8829 2.510330 TCTACTACTCCCTCCATCCCA 58.490 52.381 0.00 0.00 0.00 4.37
8050 8830 3.072086 TCTACTACTCCCTCCATCCCAT 58.928 50.000 0.00 0.00 0.00 4.00
8051 8831 4.257078 TCTACTACTCCCTCCATCCCATA 58.743 47.826 0.00 0.00 0.00 2.74
8052 8832 4.673132 TCTACTACTCCCTCCATCCCATAA 59.327 45.833 0.00 0.00 0.00 1.90
8053 8833 4.510303 ACTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
8054 8834 5.633473 ACTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
8055 8835 6.185677 ACTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
8056 8836 7.312162 ACTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
8057 8837 7.729350 ACTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
8058 8838 7.846823 ACTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
8059 8839 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
8060 8840 7.263901 ACTCCCTCCATCCCATAATATAAGAA 58.736 38.462 0.00 0.00 0.00 2.52
8061 8841 7.182930 ACTCCCTCCATCCCATAATATAAGAAC 59.817 40.741 0.00 0.00 0.00 3.01
8062 8842 6.156256 TCCCTCCATCCCATAATATAAGAACG 59.844 42.308 0.00 0.00 0.00 3.95
8063 8843 6.070194 CCCTCCATCCCATAATATAAGAACGT 60.070 42.308 0.00 0.00 0.00 3.99
8064 8844 7.394816 CCTCCATCCCATAATATAAGAACGTT 58.605 38.462 0.00 0.00 0.00 3.99
8065 8845 7.883311 CCTCCATCCCATAATATAAGAACGTTT 59.117 37.037 0.46 0.00 0.00 3.60
8066 8846 9.284968 CTCCATCCCATAATATAAGAACGTTTT 57.715 33.333 0.46 0.00 0.00 2.43
8067 8847 9.635404 TCCATCCCATAATATAAGAACGTTTTT 57.365 29.630 9.22 9.22 0.00 1.94
8095 8875 9.485206 ACACTATACTAATGTCAAAAACGTTCT 57.515 29.630 0.00 0.00 38.14 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 313 2.653702 GACGACTCTGCCAGCTGT 59.346 61.111 13.81 0.00 0.00 4.40
319 329 4.062656 GCCGCCCATTTTTGCCGA 62.063 61.111 0.00 0.00 0.00 5.54
338 349 2.809601 CTCCTTTGTCGCCGACGG 60.810 66.667 13.18 10.29 40.63 4.79
376 388 4.354943 CCCCCTCACCCTCCCAGT 62.355 72.222 0.00 0.00 0.00 4.00
471 490 1.582610 TTTGAGCCGGATTTGCGTCC 61.583 55.000 5.05 0.00 34.82 4.79
498 517 4.256180 GCGGGCGATCCATTCCCT 62.256 66.667 0.00 0.00 37.89 4.20
563 582 1.659335 GTCGACGCGGACACAAAGA 60.659 57.895 12.47 0.00 36.91 2.52
564 583 2.654912 GGTCGACGCGGACACAAAG 61.655 63.158 12.47 0.00 38.70 2.77
577 596 0.242825 CTGCCGTCTGTTTAGGTCGA 59.757 55.000 0.00 0.00 0.00 4.20
583 602 1.373748 GTCCGCTGCCGTCTGTTTA 60.374 57.895 0.00 0.00 0.00 2.01
588 607 3.296709 ATTTCGTCCGCTGCCGTCT 62.297 57.895 0.00 0.00 0.00 4.18
595 614 2.125673 CGACCCATTTCGTCCGCT 60.126 61.111 0.00 0.00 34.16 5.52
657 676 4.817318 TCAGCACCCTTTTTCAAACTTT 57.183 36.364 0.00 0.00 0.00 2.66
669 688 4.711949 CTGCCGCTTCAGCACCCT 62.712 66.667 0.00 0.00 42.21 4.34
793 812 1.824852 CACCCTTAATTGCCCACCTTC 59.175 52.381 0.00 0.00 0.00 3.46
812 840 2.863484 ACAATGGAGGCCCCCACA 60.863 61.111 8.81 0.00 39.34 4.17
874 907 2.300433 GAGGTTTAACGGGGTGTTTGT 58.700 47.619 0.00 0.00 42.09 2.83
1017 1056 1.604278 GGATTGCGGACCTTTATGCTC 59.396 52.381 0.00 0.00 0.00 4.26
1057 1096 0.598065 GTTGCGGCAGGAAATTGACT 59.402 50.000 1.67 0.00 0.00 3.41
1143 1184 5.763239 AGTATTTAGGAAGGGAGGGAGTA 57.237 43.478 0.00 0.00 0.00 2.59
1144 1185 4.645968 AGTATTTAGGAAGGGAGGGAGT 57.354 45.455 0.00 0.00 0.00 3.85
1145 1186 4.722279 ACAAGTATTTAGGAAGGGAGGGAG 59.278 45.833 0.00 0.00 0.00 4.30
1146 1187 4.706616 ACAAGTATTTAGGAAGGGAGGGA 58.293 43.478 0.00 0.00 0.00 4.20
1147 1188 4.722279 AGACAAGTATTTAGGAAGGGAGGG 59.278 45.833 0.00 0.00 0.00 4.30
1148 1189 5.959583 AGACAAGTATTTAGGAAGGGAGG 57.040 43.478 0.00 0.00 0.00 4.30
1149 1190 8.637196 AAAAAGACAAGTATTTAGGAAGGGAG 57.363 34.615 0.00 0.00 0.00 4.30
1150 1191 9.734984 CTAAAAAGACAAGTATTTAGGAAGGGA 57.265 33.333 0.00 0.00 33.69 4.20
1162 1203 9.474920 CATTTGAAATGCCTAAAAAGACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
1163 1204 8.203485 TCATTTGAAATGCCTAAAAAGACAAGT 58.797 29.630 12.86 0.00 0.00 3.16
1164 1205 8.592105 TCATTTGAAATGCCTAAAAAGACAAG 57.408 30.769 12.86 0.00 0.00 3.16
1165 1206 8.954950 TTCATTTGAAATGCCTAAAAAGACAA 57.045 26.923 12.86 0.00 0.00 3.18
1175 1216 8.077991 CGTATGTGATATTCATTTGAAATGCCT 58.922 33.333 12.86 5.36 37.61 4.75
1176 1217 7.326789 CCGTATGTGATATTCATTTGAAATGCC 59.673 37.037 12.86 1.28 37.61 4.40
1177 1218 8.075574 TCCGTATGTGATATTCATTTGAAATGC 58.924 33.333 12.86 0.00 37.61 3.56
1180 1221 9.119418 ACATCCGTATGTGATATTCATTTGAAA 57.881 29.630 0.00 0.00 44.79 2.69
1181 1222 8.675705 ACATCCGTATGTGATATTCATTTGAA 57.324 30.769 0.00 0.00 44.79 2.69
1182 1223 9.942850 ATACATCCGTATGTGATATTCATTTGA 57.057 29.630 3.56 0.00 45.99 2.69
1183 1224 9.977762 CATACATCCGTATGTGATATTCATTTG 57.022 33.333 3.56 0.00 46.70 2.32
1197 1238 8.731605 CACTCTAATGTCTACATACATCCGTAT 58.268 37.037 0.00 0.00 39.16 3.06
1198 1239 7.718314 ACACTCTAATGTCTACATACATCCGTA 59.282 37.037 0.00 0.00 39.16 4.02
1199 1240 6.546403 ACACTCTAATGTCTACATACATCCGT 59.454 38.462 0.00 0.00 39.16 4.69
1200 1241 6.971602 ACACTCTAATGTCTACATACATCCG 58.028 40.000 0.00 0.00 39.16 4.18
1201 1242 9.286170 TCTACACTCTAATGTCTACATACATCC 57.714 37.037 0.00 0.00 39.16 3.51
1218 1259 9.606631 GGAGTAAAATGAATGAATCTACACTCT 57.393 33.333 0.00 0.00 0.00 3.24
1219 1260 8.543774 CGGAGTAAAATGAATGAATCTACACTC 58.456 37.037 0.00 0.00 0.00 3.51
1220 1261 8.041323 ACGGAGTAAAATGAATGAATCTACACT 58.959 33.333 0.00 0.00 41.94 3.55
1221 1262 8.197988 ACGGAGTAAAATGAATGAATCTACAC 57.802 34.615 0.00 0.00 41.94 2.90
1238 1279 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
1239 1280 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
1240 1281 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
1241 1282 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1242 1283 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1243 1284 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
1244 1285 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1245 1286 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1246 1287 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1247 1288 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1248 1289 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1249 1290 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1250 1291 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1251 1292 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1252 1293 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1253 1294 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1254 1295 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1255 1296 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
1256 1297 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
1257 1298 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
1258 1299 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
1259 1300 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
1260 1301 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1261 1302 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1263 1304 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1264 1305 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1265 1306 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1266 1307 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1267 1308 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1268 1309 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1269 1310 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1270 1311 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1271 1312 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1272 1313 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1273 1314 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1274 1315 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1275 1316 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1276 1317 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1277 1318 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1278 1319 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1279 1320 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1280 1321 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1281 1322 5.859205 TTACTCCCTCCGTTCCTAAATAC 57.141 43.478 0.00 0.00 0.00 1.89
1282 1323 7.126115 TCAAATTACTCCCTCCGTTCCTAAATA 59.874 37.037 0.00 0.00 0.00 1.40
1283 1324 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
1284 1325 5.248934 TCAAATTACTCCCTCCGTTCCTAAA 59.751 40.000 0.00 0.00 0.00 1.85
1285 1326 4.778958 TCAAATTACTCCCTCCGTTCCTAA 59.221 41.667 0.00 0.00 0.00 2.69
1286 1327 4.355549 TCAAATTACTCCCTCCGTTCCTA 58.644 43.478 0.00 0.00 0.00 2.94
1287 1328 3.178865 TCAAATTACTCCCTCCGTTCCT 58.821 45.455 0.00 0.00 0.00 3.36
1288 1329 3.532542 CTCAAATTACTCCCTCCGTTCC 58.467 50.000 0.00 0.00 0.00 3.62
1289 1330 3.055312 ACCTCAAATTACTCCCTCCGTTC 60.055 47.826 0.00 0.00 0.00 3.95
1290 1331 2.910977 ACCTCAAATTACTCCCTCCGTT 59.089 45.455 0.00 0.00 0.00 4.44
1291 1332 2.547990 ACCTCAAATTACTCCCTCCGT 58.452 47.619 0.00 0.00 0.00 4.69
1292 1333 3.629142 AACCTCAAATTACTCCCTCCG 57.371 47.619 0.00 0.00 0.00 4.63
1293 1334 5.180810 AGAAACCTCAAATTACTCCCTCC 57.819 43.478 0.00 0.00 0.00 4.30
1294 1335 6.570571 GCAAAGAAACCTCAAATTACTCCCTC 60.571 42.308 0.00 0.00 0.00 4.30
1295 1336 5.243954 GCAAAGAAACCTCAAATTACTCCCT 59.756 40.000 0.00 0.00 0.00 4.20
1296 1337 5.470368 GCAAAGAAACCTCAAATTACTCCC 58.530 41.667 0.00 0.00 0.00 4.30
1297 1338 5.470368 GGCAAAGAAACCTCAAATTACTCC 58.530 41.667 0.00 0.00 0.00 3.85
1298 1339 5.470368 GGGCAAAGAAACCTCAAATTACTC 58.530 41.667 0.00 0.00 0.00 2.59
1299 1340 4.022329 CGGGCAAAGAAACCTCAAATTACT 60.022 41.667 0.00 0.00 0.00 2.24
1300 1341 4.234574 CGGGCAAAGAAACCTCAAATTAC 58.765 43.478 0.00 0.00 0.00 1.89
1411 1454 1.153086 CGGGATCTGGAAAGCCCTG 60.153 63.158 0.00 0.00 38.46 4.45
1462 1505 3.879892 CCTTCTAGTTGAATAAGGCAGGC 59.120 47.826 0.00 0.00 32.66 4.85
1832 2077 5.725110 ATTTGTACAGCGACTCATGATTC 57.275 39.130 0.00 0.00 0.00 2.52
1954 2199 2.095110 CGCCAATGCAGAGTGATGAAAA 60.095 45.455 0.00 0.00 37.32 2.29
1974 2219 6.797033 CAGTTTTCTCTTTGCAATAAGGTACG 59.203 38.462 0.00 0.00 0.00 3.67
2159 2407 2.022428 TGGACATAGCCCCCTTTCTCTA 60.022 50.000 0.00 0.00 0.00 2.43
2174 2422 5.783360 TGATAATATCGTTACCCCTGGACAT 59.217 40.000 0.00 0.00 0.00 3.06
2175 2423 5.149239 TGATAATATCGTTACCCCTGGACA 58.851 41.667 0.00 0.00 0.00 4.02
2176 2424 5.733620 TGATAATATCGTTACCCCTGGAC 57.266 43.478 0.00 0.00 0.00 4.02
2177 2425 6.945636 AATGATAATATCGTTACCCCTGGA 57.054 37.500 5.96 0.00 36.77 3.86
2178 2426 7.996098 AAAATGATAATATCGTTACCCCTGG 57.004 36.000 8.02 0.00 37.52 4.45
2203 2451 8.997323 CCTTGTTTAAAAATAATGGCATGTCAA 58.003 29.630 3.01 0.00 0.00 3.18
2204 2452 7.605691 CCCTTGTTTAAAAATAATGGCATGTCA 59.394 33.333 0.60 0.60 0.00 3.58
2205 2453 7.413988 GCCCTTGTTTAAAAATAATGGCATGTC 60.414 37.037 19.13 0.00 44.29 3.06
2206 2454 6.374053 GCCCTTGTTTAAAAATAATGGCATGT 59.626 34.615 19.13 0.00 44.29 3.21
2207 2455 6.373774 TGCCCTTGTTTAAAAATAATGGCATG 59.626 34.615 21.33 0.00 46.95 4.06
2208 2456 6.479884 TGCCCTTGTTTAAAAATAATGGCAT 58.520 32.000 21.33 0.00 46.95 4.40
2210 2458 6.809630 TTGCCCTTGTTTAAAAATAATGGC 57.190 33.333 17.98 17.98 44.74 4.40
2211 2459 7.609532 TCCATTGCCCTTGTTTAAAAATAATGG 59.390 33.333 0.00 0.00 41.15 3.16
2212 2460 8.558973 TCCATTGCCCTTGTTTAAAAATAATG 57.441 30.769 0.00 0.00 0.00 1.90
2213 2461 7.336679 GCTCCATTGCCCTTGTTTAAAAATAAT 59.663 33.333 0.00 0.00 0.00 1.28
2214 2462 6.652900 GCTCCATTGCCCTTGTTTAAAAATAA 59.347 34.615 0.00 0.00 0.00 1.40
2215 2463 6.013812 AGCTCCATTGCCCTTGTTTAAAAATA 60.014 34.615 0.00 0.00 0.00 1.40
2216 2464 5.003160 GCTCCATTGCCCTTGTTTAAAAAT 58.997 37.500 0.00 0.00 0.00 1.82
2217 2465 4.102367 AGCTCCATTGCCCTTGTTTAAAAA 59.898 37.500 0.00 0.00 0.00 1.94
2218 2466 3.645687 AGCTCCATTGCCCTTGTTTAAAA 59.354 39.130 0.00 0.00 0.00 1.52
2219 2467 3.238597 AGCTCCATTGCCCTTGTTTAAA 58.761 40.909 0.00 0.00 0.00 1.52
2220 2468 2.825532 GAGCTCCATTGCCCTTGTTTAA 59.174 45.455 0.87 0.00 0.00 1.52
2221 2469 2.224992 TGAGCTCCATTGCCCTTGTTTA 60.225 45.455 12.15 0.00 0.00 2.01
2222 2470 1.260544 GAGCTCCATTGCCCTTGTTT 58.739 50.000 0.87 0.00 0.00 2.83
2223 2471 0.112995 TGAGCTCCATTGCCCTTGTT 59.887 50.000 12.15 0.00 0.00 2.83
2224 2472 0.112995 TTGAGCTCCATTGCCCTTGT 59.887 50.000 12.15 0.00 0.00 3.16
2225 2473 0.815734 CTTGAGCTCCATTGCCCTTG 59.184 55.000 12.15 0.00 0.00 3.61
2226 2474 0.969409 GCTTGAGCTCCATTGCCCTT 60.969 55.000 12.15 0.00 38.21 3.95
2227 2475 1.379576 GCTTGAGCTCCATTGCCCT 60.380 57.895 12.15 0.00 38.21 5.19
2228 2476 3.204418 GCTTGAGCTCCATTGCCC 58.796 61.111 12.15 0.00 38.21 5.36
2230 2478 2.893617 ATGCAGCTTGAGCTCCATTGC 61.894 52.381 12.15 15.57 46.66 3.56
2231 2479 1.103803 ATGCAGCTTGAGCTCCATTG 58.896 50.000 12.15 5.80 46.66 2.82
2232 2480 1.848652 AATGCAGCTTGAGCTCCATT 58.151 45.000 14.75 14.75 46.66 3.16
2996 3369 7.690952 ACAACCAAACTAACTAGACACAAAA 57.309 32.000 0.00 0.00 0.00 2.44
3334 3920 3.650942 CCCTATAACAGCCTGGTTATGGA 59.349 47.826 14.41 0.00 41.84 3.41
3344 3930 2.355209 GCTAGGATGCCCTATAACAGCC 60.355 54.545 0.00 0.00 43.73 4.85
3408 3994 1.403249 GCGCATTGGCTGTGAATTCTT 60.403 47.619 0.30 0.00 37.57 2.52
3409 3995 0.171903 GCGCATTGGCTGTGAATTCT 59.828 50.000 0.30 0.00 37.57 2.40
3410 3996 0.803380 GGCGCATTGGCTGTGAATTC 60.803 55.000 10.83 0.00 40.72 2.17
3411 3997 1.216178 GGCGCATTGGCTGTGAATT 59.784 52.632 10.83 0.00 40.72 2.17
3412 3998 2.887360 GGCGCATTGGCTGTGAAT 59.113 55.556 10.83 0.00 40.72 2.57
3413 3999 3.736100 CGGCGCATTGGCTGTGAA 61.736 61.111 10.83 0.00 42.02 3.18
3420 4006 4.834892 CTTTCGGCGGCGCATTGG 62.835 66.667 34.36 18.76 0.00 3.16
3421 4007 4.101790 ACTTTCGGCGGCGCATTG 62.102 61.111 34.36 21.96 0.00 2.82
3422 4008 4.101790 CACTTTCGGCGGCGCATT 62.102 61.111 34.36 7.68 0.00 3.56
3542 4128 3.147595 CTGCATCGTCTCCGGGGA 61.148 66.667 0.00 0.00 33.95 4.81
3563 4149 4.182433 GGGGCAGGCTAGCAGGAC 62.182 72.222 18.24 9.75 35.83 3.85
3903 4531 1.153628 CCTAGGAGGCGGTTTCACG 60.154 63.158 1.05 0.00 0.00 4.35
4124 4760 4.878397 AGGCTAATTTGAGTTTCTCCATCG 59.122 41.667 0.00 0.00 0.00 3.84
5333 6068 0.035152 TGCCACCAATAGCAGTGAGG 60.035 55.000 0.00 0.00 36.01 3.86
5639 6378 8.877195 GGAGGGAGTATGTAATAAGGATAAACA 58.123 37.037 0.00 0.00 0.00 2.83
5789 6530 4.931661 ACTACCGATGAAACACCGATAT 57.068 40.909 0.00 0.00 0.00 1.63
5814 6569 9.443283 GATGTTCACATGAGTATATTTGCTTTC 57.557 33.333 0.00 0.00 36.57 2.62
6236 6998 8.463930 ACAATGGAGAATGAAAGTTAGACAAA 57.536 30.769 0.00 0.00 0.00 2.83
6925 7691 1.002011 GGGCTGGAGAAACAGGGTC 60.002 63.158 0.00 0.00 38.90 4.46
6994 7760 1.827399 GCTCTCCGGTGGTGAGGAAA 61.827 60.000 14.69 0.00 41.84 3.13
7063 7829 2.990479 GGAGGCAGTCCGGTCAAT 59.010 61.111 0.00 0.00 34.84 2.57
7097 7863 8.862325 TTATTCTCCAATGCTTCTGAAACTTA 57.138 30.769 0.00 0.00 0.00 2.24
7340 8107 7.230849 TGCTAATTGGACAAATCAAGTGATT 57.769 32.000 0.54 0.54 45.91 2.57
7361 8128 5.476599 TGCTGACAAAAGTTATTACCATGCT 59.523 36.000 0.00 0.00 0.00 3.79
7412 8180 6.766467 CCTAGTATAAAAACATGTCCCCAGAC 59.234 42.308 0.00 0.00 43.83 3.51
7550 8321 4.862641 TTAGGCAGGGAAGCTTTTAGAT 57.137 40.909 0.00 0.00 34.17 1.98
7718 8489 2.969628 GGGACGAGATCATGACTTGT 57.030 50.000 14.41 14.41 35.05 3.16
7785 8556 1.073897 GTTCAGGAACCTGGCTGCT 59.926 57.895 18.99 0.00 43.75 4.24
7887 8666 8.534333 TGTGAACATAACAAGATGAACTAGAC 57.466 34.615 0.00 0.00 0.00 2.59
7895 8674 6.182039 ACCGATTGTGAACATAACAAGATG 57.818 37.500 0.00 0.00 40.64 2.90
7916 8695 1.822457 CGGGATGGAGGGAGTACTACC 60.822 61.905 17.30 17.30 0.00 3.18
7931 8710 2.771943 TCTGAGCCAACTAATTCGGGAT 59.228 45.455 0.00 0.00 0.00 3.85
7935 8714 5.352569 AGACAAATCTGAGCCAACTAATTCG 59.647 40.000 0.00 0.00 32.29 3.34
7946 8725 5.009210 AGTCCGTATCTAGACAAATCTGAGC 59.991 44.000 0.00 0.00 36.29 4.26
7970 8749 7.229306 GCATATTCCCTCAAATGTGTCTTGATA 59.771 37.037 0.00 0.00 32.53 2.15
7971 8750 6.040166 GCATATTCCCTCAAATGTGTCTTGAT 59.960 38.462 0.00 0.00 32.53 2.57
7972 8751 5.357878 GCATATTCCCTCAAATGTGTCTTGA 59.642 40.000 0.00 0.00 32.24 3.02
7973 8752 5.450965 GGCATATTCCCTCAAATGTGTCTTG 60.451 44.000 0.00 0.00 31.83 3.02
7974 8753 4.646492 GGCATATTCCCTCAAATGTGTCTT 59.354 41.667 0.00 0.00 31.83 3.01
7997 8777 4.361451 AACAAGATTAATCCTTGCTGCG 57.639 40.909 19.18 4.94 43.45 5.18
8014 8794 8.092687 GGGAGTAGTAGATTGTCAACTTAACAA 58.907 37.037 0.00 0.00 40.63 2.83
8036 8816 7.569240 GTTCTTATATTATGGGATGGAGGGAG 58.431 42.308 0.00 0.00 0.00 4.30
8037 8817 6.156256 CGTTCTTATATTATGGGATGGAGGGA 59.844 42.308 0.00 0.00 0.00 4.20
8038 8818 6.070194 ACGTTCTTATATTATGGGATGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
8039 8819 6.947464 ACGTTCTTATATTATGGGATGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
8040 8820 8.848474 AAACGTTCTTATATTATGGGATGGAG 57.152 34.615 0.00 0.00 0.00 3.86
8041 8821 9.635404 AAAAACGTTCTTATATTATGGGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
8069 8849 9.485206 AGAACGTTTTTGACATTAGTATAGTGT 57.515 29.630 0.46 0.00 44.70 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.