Multiple sequence alignment - TraesCS2D01G388100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G388100 chr2D 100.000 9622 0 0 1 9622 493512471 493522092 0.000000e+00 17769.0
1 TraesCS2D01G388100 chr2D 87.970 133 6 4 7474 7598 46677120 46676990 2.170000e-31 148.0
2 TraesCS2D01G388100 chr2B 95.923 6720 226 22 2336 9026 581702284 581708984 0.000000e+00 10848.0
3 TraesCS2D01G388100 chr2B 92.641 1454 76 16 837 2266 581700840 581702286 0.000000e+00 2063.0
4 TraesCS2D01G388100 chr2B 92.925 523 23 6 9113 9622 581709037 581709558 0.000000e+00 749.0
5 TraesCS2D01G388100 chr2B 88.625 589 38 11 196 776 581700262 581700829 0.000000e+00 689.0
6 TraesCS2D01G388100 chr2A 95.410 6863 218 28 2336 9144 640093202 640086383 0.000000e+00 10839.0
7 TraesCS2D01G388100 chr2A 91.813 2101 98 24 220 2266 640095280 640093200 0.000000e+00 2859.0
8 TraesCS2D01G388100 chr2A 91.068 571 28 10 9069 9622 640086404 640085840 0.000000e+00 750.0
9 TraesCS2D01G388100 chr2A 87.970 133 6 4 7474 7598 110375498 110375628 2.170000e-31 148.0
10 TraesCS2D01G388100 chr4A 87.970 133 6 4 7474 7598 441332517 441332387 2.170000e-31 148.0
11 TraesCS2D01G388100 chr4A 87.218 133 7 4 7474 7598 480115901 480115771 1.010000e-29 143.0
12 TraesCS2D01G388100 chrUn 89.916 119 4 4 7487 7598 9871081 9871198 7.790000e-31 147.0
13 TraesCS2D01G388100 chrUn 87.838 74 7 2 2264 2337 99106773 99106844 1.720000e-12 86.1
14 TraesCS2D01G388100 chr4B 87.218 133 7 5 7474 7598 432059271 432059141 1.010000e-29 143.0
15 TraesCS2D01G388100 chr1A 87.218 133 7 4 7474 7598 16270967 16270837 1.010000e-29 143.0
16 TraesCS2D01G388100 chr5D 86.466 133 8 6 7474 7598 10109523 10109393 4.690000e-28 137.0
17 TraesCS2D01G388100 chr1D 86.466 133 8 4 7474 7598 15110949 15110819 4.690000e-28 137.0
18 TraesCS2D01G388100 chr1D 84.375 64 8 2 2241 2302 8232506 8232569 2.900000e-05 62.1
19 TraesCS2D01G388100 chr6B 85.714 133 9 5 7474 7598 664765630 664765760 2.180000e-26 132.0
20 TraesCS2D01G388100 chr6B 83.459 133 11 6 7474 7598 696314898 696315027 7.900000e-21 113.0
21 TraesCS2D01G388100 chr3D 89.552 67 4 3 2271 2337 443261485 443261422 2.230000e-11 82.4
22 TraesCS2D01G388100 chr3D 85.507 69 7 3 2271 2337 605061180 605061247 1.730000e-07 69.4
23 TraesCS2D01G388100 chr3D 86.792 53 3 4 2293 2342 404291624 404291573 1.000000e-03 56.5
24 TraesCS2D01G388100 chr5A 77.419 155 22 10 1 143 667117003 667117156 8.010000e-11 80.5
25 TraesCS2D01G388100 chr6D 84.615 78 7 2 2264 2337 136473345 136473269 1.340000e-08 73.1
26 TraesCS2D01G388100 chr3B 83.544 79 10 3 2264 2340 607525707 607525784 4.820000e-08 71.3
27 TraesCS2D01G388100 chr6A 86.765 68 2 3 2271 2338 510254122 510254182 1.730000e-07 69.4
28 TraesCS2D01G388100 chr7D 82.667 75 9 4 2264 2335 121199832 121199759 8.070000e-06 63.9
29 TraesCS2D01G388100 chr7D 84.058 69 7 4 2264 2329 121788918 121788985 8.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G388100 chr2D 493512471 493522092 9621 False 17769.00 17769 100.000000 1 9622 1 chr2D.!!$F1 9621
1 TraesCS2D01G388100 chr2B 581700262 581709558 9296 False 3587.25 10848 92.528500 196 9622 4 chr2B.!!$F1 9426
2 TraesCS2D01G388100 chr2A 640085840 640095280 9440 True 4816.00 10839 92.763667 220 9622 3 chr2A.!!$R1 9402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 352 0.525761 GTTGCTAATCCTGGCGCAAA 59.474 50.0 10.83 0.00 43.11 3.68 F
1628 1690 0.312416 TTTTGTGGGTGCGTATGTGC 59.688 50.0 0.00 0.00 0.00 4.57 F
1633 1695 0.320508 TGGGTGCGTATGTGCGTTTA 60.321 50.0 0.00 0.00 37.81 2.01 F
2926 3000 0.038599 TTGTGTCCATGCCATCTGCT 59.961 50.0 0.00 0.00 42.00 4.24 F
3560 3634 0.179029 CGTTCACCAAGGACAGGGTT 60.179 55.0 0.00 0.00 34.45 4.11 F
4187 4261 0.242825 CGCAGTAGAAACTCCCACGA 59.757 55.0 0.00 0.00 31.97 4.35 F
5162 5236 0.517755 CTCTGTTGCTGCTGCTTCAG 59.482 55.0 23.16 23.16 39.67 3.02 F
5698 5772 0.745845 CTGGGCGTGGATCTTCAAGG 60.746 60.0 0.00 0.00 0.00 3.61 F
6294 6368 0.244178 GAAGAGAAACGGCTCCGAGT 59.756 55.0 15.95 1.70 42.83 4.18 F
7295 7369 0.593128 CAGGCAAGTTTCAGTTCCCG 59.407 55.0 0.00 0.00 0.00 5.14 F
7994 8096 1.096416 ACCTTCGGTTGCGAAAAACA 58.904 45.0 0.00 0.00 27.29 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2394 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12 R
2926 3000 0.321387 CTTGCTTCTGCTGCTCTCCA 60.321 55.000 0.00 0.00 40.48 3.86 R
3045 3119 0.322456 TGTATGAGGCAACACAGGGC 60.322 55.000 0.00 0.00 41.70 5.19 R
4856 4930 0.459237 CGCGATCCAGAAGAAGCACT 60.459 55.000 0.00 0.00 33.34 4.40 R
5195 5269 2.054232 TGCGTAGTTTTGGGTTTGGA 57.946 45.000 0.00 0.00 0.00 3.53 R
5698 5772 3.383761 CAACTGGTTTTGTGAGCCATTC 58.616 45.455 0.00 0.00 0.00 2.67 R
6294 6368 2.728180 CTAGCATGCGCCTCCGTA 59.272 61.111 13.01 0.00 39.83 4.02 R
7374 7448 2.751991 ACAGGTAGCTGTCAGCACT 58.248 52.632 26.23 17.37 45.56 4.40 R
8209 8311 0.400093 ATACCCCTGGAGTAGCACCC 60.400 60.000 0.00 0.00 0.00 4.61 R
8498 8615 0.107643 GCATGCTCCCTAGAACCTCC 59.892 60.000 11.37 0.00 0.00 4.30 R
9186 9394 0.612732 TTGCTCAGAGCCCCAATTGG 60.613 55.000 20.16 18.21 41.51 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 8.839310 ACATGACATTAATAAGGTCTCTATGC 57.161 34.615 17.03 0.00 42.34 3.14
92 93 8.654997 ACATGACATTAATAAGGTCTCTATGCT 58.345 33.333 17.03 3.81 42.34 3.79
102 103 9.540538 AATAAGGTCTCTATGCTATGATACAGT 57.459 33.333 0.00 0.00 0.00 3.55
103 104 6.832520 AGGTCTCTATGCTATGATACAGTG 57.167 41.667 0.00 0.00 0.00 3.66
104 105 5.184864 AGGTCTCTATGCTATGATACAGTGC 59.815 44.000 0.00 0.00 0.00 4.40
105 106 5.047731 GGTCTCTATGCTATGATACAGTGCA 60.048 44.000 0.00 0.00 38.05 4.57
106 107 6.350864 GGTCTCTATGCTATGATACAGTGCAT 60.351 42.308 14.53 14.53 44.93 3.96
107 108 7.095910 GTCTCTATGCTATGATACAGTGCATT 58.904 38.462 15.03 0.00 43.09 3.56
108 109 8.246871 GTCTCTATGCTATGATACAGTGCATTA 58.753 37.037 15.03 7.40 43.09 1.90
109 110 8.975295 TCTCTATGCTATGATACAGTGCATTAT 58.025 33.333 15.03 0.00 43.09 1.28
110 111 8.937634 TCTATGCTATGATACAGTGCATTATG 57.062 34.615 15.03 0.00 43.09 1.90
111 112 8.752187 TCTATGCTATGATACAGTGCATTATGA 58.248 33.333 15.03 10.59 43.09 2.15
112 113 9.374838 CTATGCTATGATACAGTGCATTATGAA 57.625 33.333 15.03 0.00 43.09 2.57
113 114 7.662604 TGCTATGATACAGTGCATTATGAAG 57.337 36.000 0.00 0.00 0.00 3.02
114 115 7.444299 TGCTATGATACAGTGCATTATGAAGA 58.556 34.615 0.00 0.00 0.00 2.87
115 116 7.386025 TGCTATGATACAGTGCATTATGAAGAC 59.614 37.037 0.00 0.00 0.00 3.01
116 117 7.386025 GCTATGATACAGTGCATTATGAAGACA 59.614 37.037 0.00 0.00 0.00 3.41
117 118 9.433153 CTATGATACAGTGCATTATGAAGACAT 57.567 33.333 0.00 0.00 40.16 3.06
118 119 8.687292 ATGATACAGTGCATTATGAAGACATT 57.313 30.769 0.00 0.00 37.87 2.71
119 120 9.783081 ATGATACAGTGCATTATGAAGACATTA 57.217 29.630 0.00 0.00 37.87 1.90
120 121 9.783081 TGATACAGTGCATTATGAAGACATTAT 57.217 29.630 0.00 0.00 37.87 1.28
122 123 9.783081 ATACAGTGCATTATGAAGACATTATCA 57.217 29.630 0.00 0.00 37.87 2.15
123 124 8.687292 ACAGTGCATTATGAAGACATTATCAT 57.313 30.769 0.00 0.00 39.50 2.45
124 125 9.783081 ACAGTGCATTATGAAGACATTATCATA 57.217 29.630 0.00 0.00 37.46 2.15
126 127 9.783081 AGTGCATTATGAAGACATTATCATACA 57.217 29.630 0.00 0.00 38.04 2.29
127 128 9.817365 GTGCATTATGAAGACATTATCATACAC 57.183 33.333 0.00 0.00 38.04 2.90
128 129 9.783081 TGCATTATGAAGACATTATCATACACT 57.217 29.630 0.00 0.00 38.04 3.55
297 304 4.935808 GGAATTCGAGTGGACACTGTTTAT 59.064 41.667 10.08 0.00 42.66 1.40
298 305 5.163854 GGAATTCGAGTGGACACTGTTTATG 60.164 44.000 10.08 0.00 42.66 1.90
345 352 0.525761 GTTGCTAATCCTGGCGCAAA 59.474 50.000 10.83 0.00 43.11 3.68
380 387 1.080093 TCCTGGATCAACACGCGTC 60.080 57.895 9.86 0.00 0.00 5.19
381 388 2.444624 CCTGGATCAACACGCGTCG 61.445 63.158 9.86 8.08 0.00 5.12
382 389 3.071459 CTGGATCAACACGCGTCGC 62.071 63.158 9.86 7.29 0.00 5.19
383 390 3.849953 GGATCAACACGCGTCGCC 61.850 66.667 9.86 0.26 0.00 5.54
384 391 2.809601 GATCAACACGCGTCGCCT 60.810 61.111 9.86 0.00 0.00 5.52
385 392 2.789203 GATCAACACGCGTCGCCTC 61.789 63.158 9.86 0.00 0.00 4.70
411 418 2.754658 CCGTCCGCAGTCCCTACT 60.755 66.667 0.00 0.00 35.91 2.57
533 550 1.903043 ACCCTAAACCCATCCCCTAC 58.097 55.000 0.00 0.00 0.00 3.18
560 577 1.101635 CCGCTCCTCCGTCTCATGTA 61.102 60.000 0.00 0.00 0.00 2.29
572 589 5.007430 TCCGTCTCATGTACGATAAGTTCTC 59.993 44.000 19.98 0.00 42.90 2.87
587 605 5.881777 AAGTTCTCCGCCTTCTATTTTTC 57.118 39.130 0.00 0.00 0.00 2.29
588 606 5.167303 AGTTCTCCGCCTTCTATTTTTCT 57.833 39.130 0.00 0.00 0.00 2.52
589 607 4.938226 AGTTCTCCGCCTTCTATTTTTCTG 59.062 41.667 0.00 0.00 0.00 3.02
614 649 6.493449 TCGTTTGATTGTGCATTAATCTGA 57.507 33.333 20.44 13.24 35.94 3.27
616 651 7.537715 TCGTTTGATTGTGCATTAATCTGATT 58.462 30.769 20.44 8.14 35.94 2.57
637 675 4.715534 TCTTTTCTGTGTCCCATAACCA 57.284 40.909 0.00 0.00 0.00 3.67
688 726 2.912771 TCTTTTCTGTTTCTGTGCGGA 58.087 42.857 0.00 0.00 0.00 5.54
779 817 1.017387 CCGCAGATTGCTTTACCCTC 58.983 55.000 0.00 0.00 42.25 4.30
782 820 2.866762 CGCAGATTGCTTTACCCTCTAC 59.133 50.000 0.00 0.00 42.25 2.59
789 827 1.420514 GCTTTACCCTCTACATCCCCC 59.579 57.143 0.00 0.00 0.00 5.40
795 833 4.796185 ACCCTCTACATCCCCCATATAA 57.204 45.455 0.00 0.00 0.00 0.98
832 880 2.159324 TCAACAAATTGTGCGCAACTCA 60.159 40.909 14.00 2.47 37.44 3.41
862 910 3.316868 TCTGTCCGAATTGTTGGGTTTTC 59.683 43.478 0.00 0.00 0.00 2.29
864 913 3.067461 TGTCCGAATTGTTGGGTTTTCTG 59.933 43.478 0.00 0.00 0.00 3.02
870 919 4.686191 ATTGTTGGGTTTTCTGATTGCA 57.314 36.364 0.00 0.00 0.00 4.08
894 943 4.044426 GCGAATTTCCTTATCAATGTGGC 58.956 43.478 0.00 0.00 0.00 5.01
903 952 2.706339 ATCAATGTGGCTCACTCTCC 57.294 50.000 6.83 0.00 35.11 3.71
937 986 4.047822 GCTACTGATTCTGATCCGAACTG 58.952 47.826 1.27 4.01 0.00 3.16
956 1005 4.566987 ACTGATTCTGACGAAACCTAACC 58.433 43.478 0.00 0.00 31.91 2.85
957 1006 4.283722 ACTGATTCTGACGAAACCTAACCT 59.716 41.667 0.00 0.00 31.91 3.50
1053 1104 1.061729 CGACAACACAAACGCTGCA 59.938 52.632 0.00 0.00 0.00 4.41
1086 1137 3.304721 GGCTGCATTGGTGGCACA 61.305 61.111 20.82 0.00 36.11 4.57
1415 1475 9.853555 TTGTGGCTCTTTTTATGTATATGTTTG 57.146 29.630 0.00 0.00 0.00 2.93
1462 1522 4.082125 ACAAAAGAGGGTTAGGCATTGAG 58.918 43.478 0.00 0.00 0.00 3.02
1537 1599 1.216990 CCCCTAGACCCTTGAGCATT 58.783 55.000 0.00 0.00 0.00 3.56
1560 1622 8.885722 CATTGAAATTTGTGCTAATTAATGGCT 58.114 29.630 0.00 0.00 28.75 4.75
1578 1640 9.944376 TTAATGGCTATTATAGGATTGACTGAC 57.056 33.333 3.09 0.00 0.00 3.51
1618 1680 3.576078 TCATGAGACTGTTTTGTGGGT 57.424 42.857 0.00 0.00 0.00 4.51
1620 1682 1.388547 TGAGACTGTTTTGTGGGTGC 58.611 50.000 0.00 0.00 0.00 5.01
1622 1684 0.393808 AGACTGTTTTGTGGGTGCGT 60.394 50.000 0.00 0.00 0.00 5.24
1628 1690 0.312416 TTTTGTGGGTGCGTATGTGC 59.688 50.000 0.00 0.00 0.00 4.57
1631 1693 2.031314 TGGGTGCGTATGTGCGTT 59.969 55.556 0.00 0.00 37.81 4.84
1633 1695 0.320508 TGGGTGCGTATGTGCGTTTA 60.321 50.000 0.00 0.00 37.81 2.01
1634 1696 0.372334 GGGTGCGTATGTGCGTTTAG 59.628 55.000 0.00 0.00 37.81 1.85
1635 1697 1.073177 GGTGCGTATGTGCGTTTAGT 58.927 50.000 0.00 0.00 37.81 2.24
1636 1698 1.201877 GGTGCGTATGTGCGTTTAGTG 60.202 52.381 0.00 0.00 37.81 2.74
1652 1722 6.318628 CGTTTAGTGCAATTTTGTGGCTATA 58.681 36.000 0.00 0.00 0.00 1.31
1668 1738 7.573710 TGTGGCTATATCTTTCCTTGTGTATT 58.426 34.615 0.00 0.00 0.00 1.89
1829 1901 7.307694 GCAAATATTGATGACAGTGAACTGAA 58.692 34.615 17.11 5.40 46.59 3.02
1835 1907 6.732531 TGATGACAGTGAACTGAAATCATC 57.267 37.500 23.00 23.00 46.59 2.92
1855 1928 4.811555 TCAGACCGTTTTTGTTGATGAG 57.188 40.909 0.00 0.00 0.00 2.90
1859 1932 4.216257 AGACCGTTTTTGTTGATGAGATGG 59.784 41.667 0.00 0.00 0.00 3.51
1911 1985 8.853077 ACACTGATTTCTTACTGATGATTTCA 57.147 30.769 0.00 0.00 0.00 2.69
1932 2006 4.706476 TCAATTTGGCATCTTTAGGGTCAG 59.294 41.667 0.00 0.00 0.00 3.51
1940 2014 2.180276 TCTTTAGGGTCAGTGGAGAGC 58.820 52.381 0.00 0.00 35.36 4.09
1958 2032 1.006281 AGCCAGAAATCTCCCAATGCA 59.994 47.619 0.00 0.00 0.00 3.96
1967 2041 1.211212 TCTCCCAATGCACCTGATCAG 59.789 52.381 16.24 16.24 0.00 2.90
1985 2059 3.186909 TCAGAGTGACGTTGTGAACTTG 58.813 45.455 0.00 0.00 0.00 3.16
2002 2076 1.622811 CTTGGAGTCTGCTGAAGGAGT 59.377 52.381 0.00 0.00 34.87 3.85
2261 2335 9.990360 TCTTGGATTGTATTATGTCGCTATTAA 57.010 29.630 0.00 0.00 0.00 1.40
2273 2347 9.999009 TTATGTCGCTATTAATTACTCTATCCG 57.001 33.333 0.00 0.00 0.00 4.18
2274 2348 7.444629 TGTCGCTATTAATTACTCTATCCGT 57.555 36.000 0.00 0.00 0.00 4.69
2275 2349 7.524912 TGTCGCTATTAATTACTCTATCCGTC 58.475 38.462 0.00 0.00 0.00 4.79
2276 2350 6.966066 GTCGCTATTAATTACTCTATCCGTCC 59.034 42.308 0.00 0.00 0.00 4.79
2277 2351 6.094603 TCGCTATTAATTACTCTATCCGTCCC 59.905 42.308 0.00 0.00 0.00 4.46
2278 2352 6.127814 CGCTATTAATTACTCTATCCGTCCCA 60.128 42.308 0.00 0.00 0.00 4.37
2279 2353 7.576287 CGCTATTAATTACTCTATCCGTCCCAA 60.576 40.741 0.00 0.00 0.00 4.12
2280 2354 8.092687 GCTATTAATTACTCTATCCGTCCCAAA 58.907 37.037 0.00 0.00 0.00 3.28
2281 2355 9.991906 CTATTAATTACTCTATCCGTCCCAAAA 57.008 33.333 0.00 0.00 0.00 2.44
2283 2357 9.862149 ATTAATTACTCTATCCGTCCCAAAAAT 57.138 29.630 0.00 0.00 0.00 1.82
2286 2360 8.904099 ATTACTCTATCCGTCCCAAAAATAAG 57.096 34.615 0.00 0.00 0.00 1.73
2287 2361 6.309389 ACTCTATCCGTCCCAAAAATAAGT 57.691 37.500 0.00 0.00 0.00 2.24
2288 2362 6.113411 ACTCTATCCGTCCCAAAAATAAGTG 58.887 40.000 0.00 0.00 0.00 3.16
2289 2363 6.057321 TCTATCCGTCCCAAAAATAAGTGT 57.943 37.500 0.00 0.00 0.00 3.55
2290 2364 6.110707 TCTATCCGTCCCAAAAATAAGTGTC 58.889 40.000 0.00 0.00 0.00 3.67
2291 2365 4.360951 TCCGTCCCAAAAATAAGTGTCT 57.639 40.909 0.00 0.00 0.00 3.41
2292 2366 4.320870 TCCGTCCCAAAAATAAGTGTCTC 58.679 43.478 0.00 0.00 0.00 3.36
2293 2367 4.069304 CCGTCCCAAAAATAAGTGTCTCA 58.931 43.478 0.00 0.00 0.00 3.27
2294 2368 4.517453 CCGTCCCAAAAATAAGTGTCTCAA 59.483 41.667 0.00 0.00 0.00 3.02
2295 2369 5.449304 CGTCCCAAAAATAAGTGTCTCAAC 58.551 41.667 0.00 0.00 0.00 3.18
2296 2370 5.238650 CGTCCCAAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
2297 2371 6.238648 CGTCCCAAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
2298 2372 7.489160 GTCCCAAAAATAAGTGTCTCAACTTT 58.511 34.615 0.00 0.00 40.77 2.66
2299 2373 8.626526 GTCCCAAAAATAAGTGTCTCAACTTTA 58.373 33.333 0.00 0.00 40.77 1.85
2300 2374 8.846211 TCCCAAAAATAAGTGTCTCAACTTTAG 58.154 33.333 0.00 0.00 40.77 1.85
2301 2375 8.630037 CCCAAAAATAAGTGTCTCAACTTTAGT 58.370 33.333 0.00 0.00 40.77 2.24
2310 2384 9.530633 AAGTGTCTCAACTTTAGTACAACTAAG 57.469 33.333 0.00 0.00 41.23 2.18
2311 2385 8.910944 AGTGTCTCAACTTTAGTACAACTAAGA 58.089 33.333 0.00 0.00 41.23 2.10
2312 2386 9.694137 GTGTCTCAACTTTAGTACAACTAAGAT 57.306 33.333 0.00 0.00 41.23 2.40
2313 2387 9.692749 TGTCTCAACTTTAGTACAACTAAGATG 57.307 33.333 0.00 0.00 41.23 2.90
2314 2388 8.648968 GTCTCAACTTTAGTACAACTAAGATGC 58.351 37.037 0.00 0.00 41.23 3.91
2315 2389 8.585881 TCTCAACTTTAGTACAACTAAGATGCT 58.414 33.333 0.00 0.00 41.23 3.79
2316 2390 9.209175 CTCAACTTTAGTACAACTAAGATGCTT 57.791 33.333 0.00 0.00 41.23 3.91
2324 2398 8.281212 AGTACAACTAAGATGCTTATTTTGGG 57.719 34.615 0.00 0.00 0.00 4.12
2325 2399 8.107095 AGTACAACTAAGATGCTTATTTTGGGA 58.893 33.333 0.00 0.00 0.00 4.37
2326 2400 7.158099 ACAACTAAGATGCTTATTTTGGGAC 57.842 36.000 0.00 0.00 0.00 4.46
2327 2401 6.128007 ACAACTAAGATGCTTATTTTGGGACG 60.128 38.462 0.00 0.00 0.00 4.79
2328 2402 4.881850 ACTAAGATGCTTATTTTGGGACGG 59.118 41.667 0.00 0.00 0.00 4.79
2329 2403 3.644966 AGATGCTTATTTTGGGACGGA 57.355 42.857 0.00 0.00 0.00 4.69
2330 2404 3.545703 AGATGCTTATTTTGGGACGGAG 58.454 45.455 0.00 0.00 0.00 4.63
2331 2405 2.122783 TGCTTATTTTGGGACGGAGG 57.877 50.000 0.00 0.00 0.00 4.30
2332 2406 1.340600 TGCTTATTTTGGGACGGAGGG 60.341 52.381 0.00 0.00 0.00 4.30
2333 2407 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
2334 2408 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
2454 2528 7.772292 TGAAAAGGTCCTCTGATTTATCATCTG 59.228 37.037 0.00 0.00 36.02 2.90
2465 2539 7.510343 TCTGATTTATCATCTGTCATCCTACCA 59.490 37.037 0.00 0.00 36.02 3.25
2486 2560 7.880160 ACCAGATGTTTTTAGCTGCAATATA 57.120 32.000 1.02 0.00 32.92 0.86
2487 2561 8.469309 ACCAGATGTTTTTAGCTGCAATATAT 57.531 30.769 1.02 0.00 32.92 0.86
2488 2562 8.917088 ACCAGATGTTTTTAGCTGCAATATATT 58.083 29.630 1.02 0.00 32.92 1.28
2621 2695 5.010282 ACCAGGATGCTAAAAACCTTACAG 58.990 41.667 0.00 0.00 31.97 2.74
2622 2696 5.010282 CCAGGATGCTAAAAACCTTACAGT 58.990 41.667 0.00 0.00 31.97 3.55
2627 2701 9.309224 AGGATGCTAAAAACCTTACAGTTAATT 57.691 29.630 0.00 0.00 0.00 1.40
2779 2853 2.034305 GCCTGCATCTTTGGATCATCAC 59.966 50.000 0.00 0.00 0.00 3.06
2796 2870 3.973206 TCACGCTTCTCTAATTTGGGA 57.027 42.857 0.00 0.00 0.00 4.37
2844 2918 5.887214 TCTGCCTTCCTACTTGCATATAA 57.113 39.130 0.00 0.00 32.53 0.98
2845 2919 6.247229 TCTGCCTTCCTACTTGCATATAAA 57.753 37.500 0.00 0.00 32.53 1.40
2856 2930 9.391006 CCTACTTGCATATAAAACTTACCTTCA 57.609 33.333 0.00 0.00 0.00 3.02
2908 2982 7.291411 ACTATTATCTGACGAGCCTAATGTT 57.709 36.000 0.00 0.00 0.00 2.71
2926 3000 0.038599 TTGTGTCCATGCCATCTGCT 59.961 50.000 0.00 0.00 42.00 4.24
3037 3111 6.764308 ATGGTTTCATCTAATTCCTGTGTG 57.236 37.500 0.00 0.00 0.00 3.82
3045 3119 2.119801 AATTCCTGTGTGCTAGCTGG 57.880 50.000 17.23 10.11 0.00 4.85
3052 3126 2.437359 GTGCTAGCTGGCCCTGTG 60.437 66.667 20.33 0.00 0.00 3.66
3071 3145 0.328258 GTTGCCTCATACACCAGGGT 59.672 55.000 0.00 0.00 0.00 4.34
3104 3178 2.095718 GCTCCAGCCGAAAAAGTTAGTG 60.096 50.000 0.00 0.00 34.31 2.74
3159 3233 7.215789 TGCTTTCACAATTATGTTGGAACATT 58.784 30.769 10.18 0.00 46.95 2.71
3160 3234 7.714377 TGCTTTCACAATTATGTTGGAACATTT 59.286 29.630 10.18 0.00 46.95 2.32
3195 3269 3.195825 GTGCTTGGTCTACAGGTGTCTAT 59.804 47.826 0.00 0.00 0.00 1.98
3218 3292 3.620488 GATTCATGCAAGGTGTTCCCTA 58.380 45.455 0.00 0.00 45.47 3.53
3274 3348 5.636837 CAAAAACAAGACACGAGGAAAGAA 58.363 37.500 0.00 0.00 0.00 2.52
3279 3353 3.579335 AGACACGAGGAAAGAAGCTAC 57.421 47.619 0.00 0.00 0.00 3.58
3328 3402 2.237143 TGCTTCGAATCCCAAGATGAGT 59.763 45.455 0.00 0.00 31.29 3.41
3343 3417 1.059098 TGAGTGTGCAGATTCCACCT 58.941 50.000 3.84 0.00 32.30 4.00
3477 3551 1.724582 GGTGTGCCGATGGGTAATGC 61.725 60.000 0.00 0.00 34.97 3.56
3560 3634 0.179029 CGTTCACCAAGGACAGGGTT 60.179 55.000 0.00 0.00 34.45 4.11
3598 3672 1.338579 GCTTGTCCTCACCTTCCTCAG 60.339 57.143 0.00 0.00 0.00 3.35
3679 3753 6.673583 TGAACAGAAGAGACCTATCAGGATA 58.326 40.000 0.00 0.00 37.67 2.59
3685 3759 7.451255 CAGAAGAGACCTATCAGGATAACTCAT 59.549 40.741 0.00 7.38 37.67 2.90
3718 3792 4.412796 TGAAGAACTCATGCTGGATAGG 57.587 45.455 0.00 0.00 0.00 2.57
3780 3854 2.812591 CTCTGCATCATATGAACCAGCC 59.187 50.000 21.95 6.11 0.00 4.85
3797 3871 2.653115 CAGCTCAGCCTGTCACGA 59.347 61.111 0.00 0.00 0.00 4.35
3814 3888 1.644786 CGACATTTCCGCCCCTTCAC 61.645 60.000 0.00 0.00 0.00 3.18
4018 4092 0.902531 GTGCTAGTTCCAGGCTACCA 59.097 55.000 0.00 0.00 0.00 3.25
4173 4247 2.343758 CACACCTACCTGCGCAGT 59.656 61.111 33.75 23.68 0.00 4.40
4187 4261 0.242825 CGCAGTAGAAACTCCCACGA 59.757 55.000 0.00 0.00 31.97 4.35
4428 4502 3.134458 GACCTCAAAATATCTCGGCCTG 58.866 50.000 0.00 0.00 0.00 4.85
4438 4512 2.489938 TCTCGGCCTGCAAATTAACT 57.510 45.000 0.00 0.00 0.00 2.24
4564 4638 6.566141 TCATATTGTGCCACAATCTGAAATG 58.434 36.000 26.81 22.34 44.91 2.32
4565 4639 6.377712 TCATATTGTGCCACAATCTGAAATGA 59.622 34.615 26.81 23.75 44.91 2.57
4628 4702 1.953311 GCATTTTAGGGAAGCCACCGA 60.953 52.381 0.00 0.00 0.00 4.69
4714 4788 6.258947 GTCTTAAGGCCAGAGTTAATCATGTC 59.741 42.308 5.01 0.00 0.00 3.06
4715 4789 4.574674 AAGGCCAGAGTTAATCATGTCA 57.425 40.909 5.01 0.00 0.00 3.58
4807 4881 0.999406 CGGTAAATGCTGAGGTGACG 59.001 55.000 0.00 0.00 0.00 4.35
4856 4930 4.664392 TGATATGACCATGCATATGCCAA 58.336 39.130 24.54 7.75 40.55 4.52
4874 4948 1.396301 CAAGTGCTTCTTCTGGATCGC 59.604 52.381 0.00 0.00 33.63 4.58
4893 4967 2.350192 CGCGCAATGGTACTGATGTTAA 59.650 45.455 8.75 0.00 0.00 2.01
4972 5046 3.264104 CATTGGCAATGTTTCACCATCC 58.736 45.455 27.93 0.00 34.18 3.51
4984 5058 6.210078 TGTTTCACCATCCGATAAAAACAAC 58.790 36.000 0.00 0.00 33.60 3.32
5099 5173 4.536065 CAATTCAACTAGCGCTCACAAAA 58.464 39.130 16.34 4.90 0.00 2.44
5162 5236 0.517755 CTCTGTTGCTGCTGCTTCAG 59.482 55.000 23.16 23.16 39.67 3.02
5195 5269 3.515602 AGAAACCTGTCTTGGAAGCAT 57.484 42.857 0.00 0.00 0.00 3.79
5289 5363 5.819901 CAGAAGAGGTTGTTCAGAGTTCTTT 59.180 40.000 0.00 0.00 0.00 2.52
5332 5406 4.469586 TGTACACTAGATGCTGAAATGGGA 59.530 41.667 0.00 0.00 0.00 4.37
5698 5772 0.745845 CTGGGCGTGGATCTTCAAGG 60.746 60.000 0.00 0.00 0.00 3.61
5737 5811 2.065899 TGCCCAACCAGTATAATGGC 57.934 50.000 18.94 5.36 44.80 4.40
5936 6010 1.539157 AGAGGTAAAGCAAAGGCAGC 58.461 50.000 0.00 0.00 44.61 5.25
6286 6360 3.618690 AATGAGAGGGAAGAGAAACGG 57.381 47.619 0.00 0.00 0.00 4.44
6294 6368 0.244178 GAAGAGAAACGGCTCCGAGT 59.756 55.000 15.95 1.70 42.83 4.18
6862 6936 8.783660 TGGATACTAGATACCAGACTTCAAAT 57.216 34.615 0.00 0.00 37.61 2.32
7292 7366 4.816925 AGTTCTACAGGCAAGTTTCAGTTC 59.183 41.667 0.00 0.00 0.00 3.01
7295 7369 0.593128 CAGGCAAGTTTCAGTTCCCG 59.407 55.000 0.00 0.00 0.00 5.14
7348 7422 7.604545 GTCTTATATCCTTTAGAATGCCTGGTC 59.395 40.741 0.00 0.00 0.00 4.02
7358 7432 5.649782 AGAATGCCTGGTCTTATTGTTTG 57.350 39.130 0.00 0.00 0.00 2.93
7374 7448 5.991328 TTGTTTGTCTTGTTGCAAAAACA 57.009 30.435 16.85 16.85 36.51 2.83
7439 7513 4.892934 ACACTTCAGCTTTTATTTCCCACA 59.107 37.500 0.00 0.00 0.00 4.17
7461 7535 4.320690 CACGCTTGTCAAATTGGTTAATCG 59.679 41.667 0.00 0.00 0.00 3.34
7567 7642 9.723447 TTTTACATGGTATGCAACAATATTACG 57.277 29.630 0.00 0.00 0.00 3.18
7837 7933 1.551883 CCCAAATTCAAGCCAAGAGGG 59.448 52.381 0.00 0.00 40.85 4.30
7852 7948 2.062636 AGAGGGCTTAAACTTGGGTGA 58.937 47.619 0.00 0.00 0.00 4.02
7994 8096 1.096416 ACCTTCGGTTGCGAAAAACA 58.904 45.000 0.00 0.00 27.29 2.83
8000 8102 1.520590 CGGTTGCGAAAAACATGGTTG 59.479 47.619 0.00 0.00 0.00 3.77
8272 8374 2.360475 GCTTCCCCTCTGTGCCAC 60.360 66.667 0.00 0.00 0.00 5.01
8495 8612 1.285950 GTCGGACCAAAAGCTTGCC 59.714 57.895 0.00 0.00 0.00 4.52
8498 8615 1.581447 GGACCAAAAGCTTGCCTCG 59.419 57.895 0.00 0.00 0.00 4.63
8625 8742 4.641645 CCCTGTGCGCCTGACCAA 62.642 66.667 4.18 0.00 0.00 3.67
8677 8794 4.701765 AGTAGATCCGTAGCGTCTTCTTA 58.298 43.478 0.00 0.00 0.00 2.10
8755 8872 4.527038 TCACTTAGCTGCTACTACCAAGTT 59.473 41.667 9.27 0.00 37.15 2.66
8758 8875 3.889520 AGCTGCTACTACCAAGTTACC 57.110 47.619 0.00 0.00 37.15 2.85
8792 8909 4.570772 GCACTTCCGTCAATATTGCTCTTA 59.429 41.667 10.76 0.00 0.00 2.10
8857 8974 7.124147 GGGACTTCAAATCATAGAAATGGGAAA 59.876 37.037 0.00 0.00 33.61 3.13
8876 8993 8.334263 TGGGAAAAATTAAAGGATTGAAATGC 57.666 30.769 0.00 0.00 0.00 3.56
8905 9022 8.167392 TGTCCACTCTAATCCTTGGAAAATTTA 58.833 33.333 0.00 0.00 39.86 1.40
8906 9023 9.190317 GTCCACTCTAATCCTTGGAAAATTTAT 57.810 33.333 0.00 0.00 39.86 1.40
8931 9048 4.407621 TGAGGGTCTCGCCAAGAATATTAA 59.592 41.667 0.00 0.00 39.65 1.40
9026 9148 5.163814 GCTTTATCTTGTGCTGACCTAACAG 60.164 44.000 0.00 0.00 40.43 3.16
9033 9155 3.735181 CTGACCTAACAGCGGTACC 57.265 57.895 0.16 0.16 34.19 3.34
9043 9165 0.530650 CAGCGGTACCTACATGGCTG 60.531 60.000 18.75 18.75 38.86 4.85
9076 9224 4.018050 AGGGAAAATCTGCATAAGTGGTCT 60.018 41.667 0.00 0.00 0.00 3.85
9089 9289 1.617850 AGTGGTCTGACTCTTCTGCAG 59.382 52.381 7.63 7.63 0.00 4.41
9110 9310 5.111293 CAGAAATGCAGGAAAAAGTTGTGT 58.889 37.500 0.00 0.00 0.00 3.72
9114 9314 4.364415 TGCAGGAAAAAGTTGTGTACAC 57.636 40.909 19.36 19.36 0.00 2.90
9154 9354 0.672401 TTCGCAAAAGGGAGCTACGG 60.672 55.000 0.00 0.00 0.00 4.02
9155 9355 1.079405 CGCAAAAGGGAGCTACGGA 60.079 57.895 0.00 0.00 0.00 4.69
9157 9357 0.036294 GCAAAAGGGAGCTACGGACT 60.036 55.000 0.00 0.00 0.00 3.85
9158 9358 1.726853 CAAAAGGGAGCTACGGACTG 58.273 55.000 0.00 0.00 0.00 3.51
9161 9369 3.851128 GGGAGCTACGGACTGCCC 61.851 72.222 0.00 0.00 39.59 5.36
9166 9374 0.400594 AGCTACGGACTGCCCTTTTT 59.599 50.000 0.00 0.00 0.00 1.94
9251 9462 2.361789 TCACATCCATGACAGCACATG 58.638 47.619 0.00 10.24 44.78 3.21
9421 9632 5.871524 CACAGCAGAGACATAACACTGTTAT 59.128 40.000 8.41 8.41 34.84 1.89
9584 9799 2.047560 GGGGTCAGGTCGGTTTCG 60.048 66.667 0.00 0.00 37.82 3.46
9620 9836 6.267817 GGTAACCAACTGAACCAAGTTAAAC 58.732 40.000 0.00 0.00 38.34 2.01
9621 9837 6.095860 GGTAACCAACTGAACCAAGTTAAACT 59.904 38.462 0.00 0.00 38.34 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.962884 TCATGTATGACACATACTAATGCTTT 57.037 30.769 18.36 0.00 46.47 3.51
65 66 9.929180 GCATAGAGACCTTATTAATGTCATGTA 57.071 33.333 12.49 3.76 0.00 2.29
66 67 8.654997 AGCATAGAGACCTTATTAATGTCATGT 58.345 33.333 12.49 2.12 0.00 3.21
76 77 9.540538 ACTGTATCATAGCATAGAGACCTTATT 57.459 33.333 0.00 0.00 0.00 1.40
77 78 8.965819 CACTGTATCATAGCATAGAGACCTTAT 58.034 37.037 0.00 0.00 0.00 1.73
78 79 7.094162 GCACTGTATCATAGCATAGAGACCTTA 60.094 40.741 0.00 0.00 0.00 2.69
79 80 6.295011 GCACTGTATCATAGCATAGAGACCTT 60.295 42.308 0.00 0.00 0.00 3.50
80 81 5.184864 GCACTGTATCATAGCATAGAGACCT 59.815 44.000 0.00 0.00 0.00 3.85
81 82 5.047731 TGCACTGTATCATAGCATAGAGACC 60.048 44.000 0.00 0.00 0.00 3.85
82 83 6.018589 TGCACTGTATCATAGCATAGAGAC 57.981 41.667 0.00 0.00 0.00 3.36
83 84 6.847421 ATGCACTGTATCATAGCATAGAGA 57.153 37.500 0.00 0.00 43.45 3.10
84 85 9.032420 CATAATGCACTGTATCATAGCATAGAG 57.968 37.037 0.00 0.00 44.40 2.43
85 86 8.752187 TCATAATGCACTGTATCATAGCATAGA 58.248 33.333 0.00 0.00 44.40 1.98
86 87 8.937634 TCATAATGCACTGTATCATAGCATAG 57.062 34.615 0.00 0.00 44.40 2.23
87 88 9.374838 CTTCATAATGCACTGTATCATAGCATA 57.625 33.333 0.00 0.00 44.40 3.14
88 89 8.098912 TCTTCATAATGCACTGTATCATAGCAT 58.901 33.333 0.00 0.00 46.86 3.79
89 90 7.386025 GTCTTCATAATGCACTGTATCATAGCA 59.614 37.037 0.00 0.00 39.79 3.49
90 91 7.386025 TGTCTTCATAATGCACTGTATCATAGC 59.614 37.037 0.00 0.00 0.00 2.97
91 92 8.822652 TGTCTTCATAATGCACTGTATCATAG 57.177 34.615 0.00 0.00 0.00 2.23
92 93 9.783081 AATGTCTTCATAATGCACTGTATCATA 57.217 29.630 0.00 0.00 33.49 2.15
93 94 8.687292 AATGTCTTCATAATGCACTGTATCAT 57.313 30.769 0.00 0.00 33.49 2.45
94 95 9.783081 ATAATGTCTTCATAATGCACTGTATCA 57.217 29.630 0.00 0.00 33.49 2.15
96 97 9.783081 TGATAATGTCTTCATAATGCACTGTAT 57.217 29.630 0.00 0.00 33.49 2.29
97 98 9.783081 ATGATAATGTCTTCATAATGCACTGTA 57.217 29.630 0.00 0.00 33.49 2.74
98 99 8.687292 ATGATAATGTCTTCATAATGCACTGT 57.313 30.769 0.00 0.00 33.49 3.55
100 101 9.783081 TGTATGATAATGTCTTCATAATGCACT 57.217 29.630 0.00 0.00 36.78 4.40
101 102 9.817365 GTGTATGATAATGTCTTCATAATGCAC 57.183 33.333 0.00 0.00 36.78 4.57
102 103 9.783081 AGTGTATGATAATGTCTTCATAATGCA 57.217 29.630 0.00 0.00 36.78 3.96
183 184 9.615660 AGTACTCTGTCCCATTCCATAATAATA 57.384 33.333 0.00 0.00 0.00 0.98
184 185 8.511748 AGTACTCTGTCCCATTCCATAATAAT 57.488 34.615 0.00 0.00 0.00 1.28
185 186 7.931015 AGTACTCTGTCCCATTCCATAATAA 57.069 36.000 0.00 0.00 0.00 1.40
186 187 7.789831 AGAAGTACTCTGTCCCATTCCATAATA 59.210 37.037 0.00 0.00 31.12 0.98
187 188 6.617371 AGAAGTACTCTGTCCCATTCCATAAT 59.383 38.462 0.00 0.00 31.12 1.28
188 189 5.964477 AGAAGTACTCTGTCCCATTCCATAA 59.036 40.000 0.00 0.00 31.12 1.90
189 190 5.363868 CAGAAGTACTCTGTCCCATTCCATA 59.636 44.000 0.00 0.00 45.76 2.74
190 191 4.163078 CAGAAGTACTCTGTCCCATTCCAT 59.837 45.833 0.00 0.00 45.76 3.41
191 192 3.515502 CAGAAGTACTCTGTCCCATTCCA 59.484 47.826 0.00 0.00 45.76 3.53
192 193 4.130286 CAGAAGTACTCTGTCCCATTCC 57.870 50.000 0.00 0.00 45.76 3.01
207 208 2.832733 GTGGGTACTAAGGCTCAGAAGT 59.167 50.000 0.00 0.00 0.00 3.01
217 218 0.672342 CGGATCCGGTGGGTACTAAG 59.328 60.000 26.95 0.00 35.56 2.18
276 283 5.547465 TCATAAACAGTGTCCACTCGAATT 58.453 37.500 0.00 0.00 40.20 2.17
362 369 1.080093 GACGCGTGTTGATCCAGGA 60.080 57.895 20.70 0.00 0.00 3.86
409 416 4.323562 CGGAAATTTGGAGGGAAGAGTAGT 60.324 45.833 0.00 0.00 0.00 2.73
411 418 3.054655 CCGGAAATTTGGAGGGAAGAGTA 60.055 47.826 0.00 0.00 0.00 2.59
560 577 2.100989 AGAAGGCGGAGAACTTATCGT 58.899 47.619 0.00 0.00 0.00 3.73
572 589 3.871594 ACGATCAGAAAAATAGAAGGCGG 59.128 43.478 0.00 0.00 0.00 6.13
587 605 7.165318 CAGATTAATGCACAATCAAACGATCAG 59.835 37.037 19.68 0.00 35.30 2.90
588 606 6.968335 CAGATTAATGCACAATCAAACGATCA 59.032 34.615 19.68 0.00 35.30 2.92
589 607 7.188834 TCAGATTAATGCACAATCAAACGATC 58.811 34.615 19.68 0.00 35.30 3.69
688 726 4.241590 TCAACAAATGCAGCGAAAATCT 57.758 36.364 0.00 0.00 0.00 2.40
779 817 7.397192 CCCAAGAAAATTATATGGGGGATGTAG 59.603 40.741 9.56 0.00 45.72 2.74
782 820 6.610075 CCCAAGAAAATTATATGGGGGATG 57.390 41.667 9.56 0.00 45.72 3.51
832 880 6.039717 CCCAACAATTCGGACAGATTTGATAT 59.960 38.462 14.46 1.73 40.68 1.63
862 910 1.131126 AGGAAATTCGCGTGCAATCAG 59.869 47.619 5.77 0.00 0.00 2.90
864 913 2.262572 AAGGAAATTCGCGTGCAATC 57.737 45.000 5.77 0.00 0.00 2.67
870 919 4.201910 CCACATTGATAAGGAAATTCGCGT 60.202 41.667 5.77 0.00 0.00 6.01
894 943 2.182030 GGTTCGGCGGAGAGTGAG 59.818 66.667 7.21 0.00 0.00 3.51
903 952 1.065928 CAGTAGCTAGGGTTCGGCG 59.934 63.158 0.00 0.00 0.00 6.46
937 986 6.555812 AAAAGGTTAGGTTTCGTCAGAATC 57.444 37.500 0.00 0.00 36.09 2.52
972 1021 3.291584 TCTCCGAGTCTATCACTGCATT 58.708 45.455 0.00 0.00 34.41 3.56
983 1032 6.375830 TGTACATATATCCTCTCCGAGTCT 57.624 41.667 0.00 0.00 0.00 3.24
1413 1473 8.291740 GCACAACATTCATGCATATATCTACAA 58.708 33.333 0.00 0.00 39.23 2.41
1415 1475 7.809665 TGCACAACATTCATGCATATATCTAC 58.190 34.615 0.00 0.00 44.17 2.59
1462 1522 7.635587 CAGCAAAACAAAATTACAACACATGTC 59.364 33.333 0.00 0.00 42.70 3.06
1513 1573 3.166679 GCTCAAGGGTCTAGGGGTATAG 58.833 54.545 0.00 0.00 0.00 1.31
1518 1580 1.133976 CAATGCTCAAGGGTCTAGGGG 60.134 57.143 0.00 0.00 0.00 4.79
1578 1640 8.093659 TCATGATCTCAGTCTCTACTTTATCG 57.906 38.462 0.00 0.00 31.97 2.92
1618 1680 0.440758 GCACTAAACGCACATACGCA 59.559 50.000 0.00 0.00 36.19 5.24
1620 1682 2.865556 TTGCACTAAACGCACATACG 57.134 45.000 0.00 0.00 39.59 3.06
1622 1684 5.400782 CACAAAATTGCACTAAACGCACATA 59.599 36.000 0.00 0.00 39.59 2.29
1628 1690 3.380142 AGCCACAAAATTGCACTAAACG 58.620 40.909 0.00 0.00 0.00 3.60
1631 1693 7.880160 AGATATAGCCACAAAATTGCACTAA 57.120 32.000 0.00 0.00 0.00 2.24
1633 1695 6.780457 AAGATATAGCCACAAAATTGCACT 57.220 33.333 0.00 0.00 0.00 4.40
1634 1696 6.476706 GGAAAGATATAGCCACAAAATTGCAC 59.523 38.462 0.00 0.00 0.00 4.57
1635 1697 6.380846 AGGAAAGATATAGCCACAAAATTGCA 59.619 34.615 0.00 0.00 0.00 4.08
1636 1698 6.809869 AGGAAAGATATAGCCACAAAATTGC 58.190 36.000 0.00 0.00 0.00 3.56
1652 1722 8.584157 TGCATTTACAAATACACAAGGAAAGAT 58.416 29.630 0.00 0.00 0.00 2.40
1668 1738 3.500014 CATGTCATGCGTGCATTTACAA 58.500 40.909 18.36 7.37 35.06 2.41
1681 1751 2.418976 CCACTCTCTTGTGCATGTCATG 59.581 50.000 8.56 8.56 36.68 3.07
1741 1811 8.557864 GTCTAGAGCTACACGTAAAATATCTCA 58.442 37.037 0.00 0.00 0.00 3.27
1745 1815 7.820578 AGGTCTAGAGCTACACGTAAAATAT 57.179 36.000 22.67 0.00 37.39 1.28
1752 1822 3.377798 GCTTAAGGTCTAGAGCTACACGT 59.622 47.826 24.07 11.17 38.35 4.49
1758 1828 8.897752 CAAATTTAATGCTTAAGGTCTAGAGCT 58.102 33.333 18.72 18.72 41.53 4.09
1829 1901 5.766150 TCAACAAAAACGGTCTGATGATT 57.234 34.783 0.00 0.00 0.00 2.57
1835 1907 4.811555 TCTCATCAACAAAAACGGTCTG 57.188 40.909 0.00 0.00 0.00 3.51
1855 1928 1.256812 CCAAACCCCAGTTCACCATC 58.743 55.000 0.00 0.00 34.19 3.51
1859 1932 0.185175 ACTCCCAAACCCCAGTTCAC 59.815 55.000 0.00 0.00 34.19 3.18
1911 1985 4.463891 CACTGACCCTAAAGATGCCAAATT 59.536 41.667 0.00 0.00 0.00 1.82
1916 1990 1.559682 TCCACTGACCCTAAAGATGCC 59.440 52.381 0.00 0.00 0.00 4.40
1940 2014 1.753073 GGTGCATTGGGAGATTTCTGG 59.247 52.381 0.00 0.00 0.00 3.86
1950 2024 1.064906 ACTCTGATCAGGTGCATTGGG 60.065 52.381 22.42 0.00 0.00 4.12
1958 2032 1.964223 ACAACGTCACTCTGATCAGGT 59.036 47.619 22.42 15.64 0.00 4.00
1967 2041 2.540101 CTCCAAGTTCACAACGTCACTC 59.460 50.000 0.00 0.00 36.23 3.51
1985 2059 1.204467 CTGACTCCTTCAGCAGACTCC 59.796 57.143 0.00 0.00 45.51 3.85
2002 2076 2.728007 TCGAAGAATCCTCTGCTCTGA 58.272 47.619 0.00 0.00 30.03 3.27
2074 2148 6.524101 AGTCTAGAGAACTTCCTTGATGTC 57.476 41.667 0.00 0.00 0.00 3.06
2248 2322 9.170734 ACGGATAGAGTAATTAATAGCGACATA 57.829 33.333 0.00 0.00 0.00 2.29
2253 2327 6.127814 TGGGACGGATAGAGTAATTAATAGCG 60.128 42.308 0.00 0.00 0.00 4.26
2261 2335 8.491958 ACTTATTTTTGGGACGGATAGAGTAAT 58.508 33.333 0.00 0.00 0.00 1.89
2263 2337 7.093201 ACACTTATTTTTGGGACGGATAGAGTA 60.093 37.037 0.00 0.00 0.00 2.59
2264 2338 6.113411 CACTTATTTTTGGGACGGATAGAGT 58.887 40.000 0.00 0.00 0.00 3.24
2265 2339 6.113411 ACACTTATTTTTGGGACGGATAGAG 58.887 40.000 0.00 0.00 0.00 2.43
2266 2340 6.057321 ACACTTATTTTTGGGACGGATAGA 57.943 37.500 0.00 0.00 0.00 1.98
2267 2341 6.113411 AGACACTTATTTTTGGGACGGATAG 58.887 40.000 0.00 0.00 0.00 2.08
2268 2342 6.057321 AGACACTTATTTTTGGGACGGATA 57.943 37.500 0.00 0.00 0.00 2.59
2269 2343 4.918588 AGACACTTATTTTTGGGACGGAT 58.081 39.130 0.00 0.00 0.00 4.18
2270 2344 4.202377 TGAGACACTTATTTTTGGGACGGA 60.202 41.667 0.00 0.00 0.00 4.69
2271 2345 4.069304 TGAGACACTTATTTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2272 2346 5.238650 AGTTGAGACACTTATTTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
2273 2347 6.635030 AGTTGAGACACTTATTTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
2274 2348 7.654022 AAAGTTGAGACACTTATTTTTGGGA 57.346 32.000 0.00 0.00 35.87 4.37
2275 2349 8.630037 ACTAAAGTTGAGACACTTATTTTTGGG 58.370 33.333 0.00 0.00 35.87 4.12
2284 2358 9.530633 CTTAGTTGTACTAAAGTTGAGACACTT 57.469 33.333 0.00 0.00 39.89 3.16
2285 2359 8.910944 TCTTAGTTGTACTAAAGTTGAGACACT 58.089 33.333 0.00 0.00 39.89 3.55
2286 2360 9.694137 ATCTTAGTTGTACTAAAGTTGAGACAC 57.306 33.333 0.00 0.00 39.89 3.67
2287 2361 9.692749 CATCTTAGTTGTACTAAAGTTGAGACA 57.307 33.333 0.00 0.00 39.89 3.41
2288 2362 8.648968 GCATCTTAGTTGTACTAAAGTTGAGAC 58.351 37.037 0.00 0.00 39.89 3.36
2289 2363 8.585881 AGCATCTTAGTTGTACTAAAGTTGAGA 58.414 33.333 0.00 0.00 39.89 3.27
2290 2364 8.764524 AGCATCTTAGTTGTACTAAAGTTGAG 57.235 34.615 0.00 0.00 39.89 3.02
2298 2372 9.391006 CCCAAAATAAGCATCTTAGTTGTACTA 57.609 33.333 0.00 0.00 0.00 1.82
2299 2373 8.107095 TCCCAAAATAAGCATCTTAGTTGTACT 58.893 33.333 0.00 0.00 0.00 2.73
2300 2374 8.182227 GTCCCAAAATAAGCATCTTAGTTGTAC 58.818 37.037 0.89 0.00 0.00 2.90
2301 2375 7.065324 CGTCCCAAAATAAGCATCTTAGTTGTA 59.935 37.037 0.89 0.00 0.00 2.41
2302 2376 6.128007 CGTCCCAAAATAAGCATCTTAGTTGT 60.128 38.462 0.89 0.00 0.00 3.32
2303 2377 6.258160 CGTCCCAAAATAAGCATCTTAGTTG 58.742 40.000 0.89 3.94 0.00 3.16
2304 2378 5.357032 CCGTCCCAAAATAAGCATCTTAGTT 59.643 40.000 0.00 0.00 0.00 2.24
2305 2379 4.881850 CCGTCCCAAAATAAGCATCTTAGT 59.118 41.667 0.00 0.00 0.00 2.24
2306 2380 5.123227 TCCGTCCCAAAATAAGCATCTTAG 58.877 41.667 0.00 0.00 0.00 2.18
2307 2381 5.105567 TCCGTCCCAAAATAAGCATCTTA 57.894 39.130 0.00 0.00 0.00 2.10
2308 2382 3.947834 CTCCGTCCCAAAATAAGCATCTT 59.052 43.478 0.00 0.00 0.00 2.40
2309 2383 3.545703 CTCCGTCCCAAAATAAGCATCT 58.454 45.455 0.00 0.00 0.00 2.90
2310 2384 2.618709 CCTCCGTCCCAAAATAAGCATC 59.381 50.000 0.00 0.00 0.00 3.91
2311 2385 2.654863 CCTCCGTCCCAAAATAAGCAT 58.345 47.619 0.00 0.00 0.00 3.79
2312 2386 1.340600 CCCTCCGTCCCAAAATAAGCA 60.341 52.381 0.00 0.00 0.00 3.91
2313 2387 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
2314 2388 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2315 2389 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2316 2390 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2317 2391 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2318 2392 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2319 2393 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2320 2394 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2321 2395 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2322 2396 0.751452 GAATGTACTCCCTCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
2323 2397 0.751452 GGAATGTACTCCCTCCGTCC 59.249 60.000 0.00 0.00 0.00 4.79
2324 2398 1.481871 TGGAATGTACTCCCTCCGTC 58.518 55.000 0.00 0.00 34.22 4.79
2325 2399 1.946984 TTGGAATGTACTCCCTCCGT 58.053 50.000 0.00 0.00 34.22 4.69
2326 2400 2.906354 CTTTGGAATGTACTCCCTCCG 58.094 52.381 0.00 0.00 34.22 4.63
2327 2401 2.239907 AGCTTTGGAATGTACTCCCTCC 59.760 50.000 0.00 0.00 34.22 4.30
2328 2402 3.198853 AGAGCTTTGGAATGTACTCCCTC 59.801 47.826 0.00 0.00 34.22 4.30
2329 2403 3.054802 CAGAGCTTTGGAATGTACTCCCT 60.055 47.826 0.00 0.00 34.22 4.20
2330 2404 3.274288 CAGAGCTTTGGAATGTACTCCC 58.726 50.000 0.00 0.00 34.22 4.30
2331 2405 2.680339 GCAGAGCTTTGGAATGTACTCC 59.320 50.000 6.36 0.00 35.88 3.85
2332 2406 3.338249 TGCAGAGCTTTGGAATGTACTC 58.662 45.455 6.36 0.00 0.00 2.59
2333 2407 3.244700 ACTGCAGAGCTTTGGAATGTACT 60.245 43.478 23.35 0.00 0.00 2.73
2334 2408 3.077359 ACTGCAGAGCTTTGGAATGTAC 58.923 45.455 23.35 0.00 0.00 2.90
2454 2528 6.037610 CAGCTAAAAACATCTGGTAGGATGAC 59.962 42.308 10.81 0.00 44.01 3.06
2511 2585 6.801539 TGTTTTGATAGTGTTAGCTGGAAG 57.198 37.500 0.00 0.00 0.00 3.46
2568 2642 0.392193 AGAGAGCCTGCCATTCAACG 60.392 55.000 0.00 0.00 0.00 4.10
2621 2695 6.813152 AGCATACAATTCAAGCACCAATTAAC 59.187 34.615 0.00 0.00 0.00 2.01
2622 2696 6.934056 AGCATACAATTCAAGCACCAATTAA 58.066 32.000 0.00 0.00 0.00 1.40
2627 2701 4.081406 AGAAGCATACAATTCAAGCACCA 58.919 39.130 0.00 0.00 0.00 4.17
2689 2763 4.876107 GCACAAGTGTATGGCTACAGTATT 59.124 41.667 1.79 0.00 39.99 1.89
2750 2824 1.135199 CAAAGATGCAGGCACACCATC 60.135 52.381 0.00 0.00 39.06 3.51
2779 2853 5.355350 ACTTCAATCCCAAATTAGAGAAGCG 59.645 40.000 0.00 0.00 35.79 4.68
2809 2883 6.633325 AGGAAGGCAGATATATGCTTACAT 57.367 37.500 20.88 8.08 45.75 2.29
2811 2885 7.176589 AGTAGGAAGGCAGATATATGCTTAC 57.823 40.000 20.88 13.63 45.75 2.34
2844 2918 6.493458 ACACTGCCAAATATGAAGGTAAGTTT 59.507 34.615 0.00 0.00 0.00 2.66
2845 2919 6.010219 ACACTGCCAAATATGAAGGTAAGTT 58.990 36.000 0.00 0.00 0.00 2.66
2856 2930 2.094675 GTGCCTGACACTGCCAAATAT 58.905 47.619 0.00 0.00 46.41 1.28
2880 2954 4.411927 AGGCTCGTCAGATAATAGTCCAT 58.588 43.478 0.00 0.00 0.00 3.41
2908 2982 4.324471 GCAGATGGCATGGACACA 57.676 55.556 3.81 0.00 43.97 3.72
2926 3000 0.321387 CTTGCTTCTGCTGCTCTCCA 60.321 55.000 0.00 0.00 40.48 3.86
2938 3012 8.856490 TCAAGTTATCTTTTGTTTCTTGCTTC 57.144 30.769 0.00 0.00 33.32 3.86
2969 3043 4.202558 GTCGATCGAATCAGTTTGACTACG 59.797 45.833 21.31 0.00 30.64 3.51
3037 3111 2.042831 CAACACAGGGCCAGCTAGC 61.043 63.158 6.62 6.62 0.00 3.42
3045 3119 0.322456 TGTATGAGGCAACACAGGGC 60.322 55.000 0.00 0.00 41.70 5.19
3052 3126 0.328258 ACCCTGGTGTATGAGGCAAC 59.672 55.000 0.00 0.00 0.00 4.17
3071 3145 2.942376 CGGCTGGAGCAACATAATACAA 59.058 45.455 0.20 0.00 44.36 2.41
3104 3178 2.139118 GAGTTGACACTTGGCAGAGAC 58.861 52.381 4.13 0.00 32.66 3.36
3195 3269 2.170166 GGAACACCTTGCATGAATCCA 58.830 47.619 0.00 0.00 31.30 3.41
3218 3292 1.338769 CGTTGGGGAAGACGGATTTCT 60.339 52.381 0.00 0.00 35.74 2.52
3265 3339 4.080863 TCAGATTGGGTAGCTTCTTTCCTC 60.081 45.833 0.00 0.00 0.00 3.71
3274 3348 4.840680 TGCATAGTATCAGATTGGGTAGCT 59.159 41.667 0.00 0.00 0.00 3.32
3279 3353 6.889301 ATTTGTGCATAGTATCAGATTGGG 57.111 37.500 0.00 0.00 0.00 4.12
3328 3402 1.296392 CGGAGGTGGAATCTGCACA 59.704 57.895 0.68 0.00 40.73 4.57
3343 3417 1.338107 CCATGCTGGGAGTATACGGA 58.662 55.000 0.00 0.00 32.67 4.69
3477 3551 1.750193 AAATGGTGGTACATGAGGCG 58.250 50.000 0.00 0.00 44.52 5.52
3560 3634 1.379916 CTGGAGGTGCACATCCCAA 59.620 57.895 39.28 25.18 45.61 4.12
3598 3672 1.678101 GTAATCCTCATGTTGCCCAGC 59.322 52.381 0.00 0.00 0.00 4.85
3651 3725 6.461370 CCTGATAGGTCTCTTCTGTTCATCAG 60.461 46.154 0.00 0.00 44.85 2.90
3679 3753 4.040829 TCTTCATGTGTGTCTGGATGAGTT 59.959 41.667 0.00 0.00 0.00 3.01
3685 3759 3.387699 TGAGTTCTTCATGTGTGTCTGGA 59.612 43.478 0.00 0.00 0.00 3.86
3718 3792 4.806247 GCATCTATATAGGAATGACCACGC 59.194 45.833 9.89 0.00 42.04 5.34
3780 3854 1.735920 GTCGTGACAGGCTGAGCTG 60.736 63.158 23.66 8.31 0.00 4.24
3797 3871 1.674322 CGTGAAGGGGCGGAAATGT 60.674 57.895 0.00 0.00 0.00 2.71
3828 3902 3.196901 TCCTGTATTGTACATGTTCGGCT 59.803 43.478 2.30 0.00 38.15 5.52
3868 3942 2.224744 TGAAGCAGGAACAGCATTGGTA 60.225 45.455 0.00 0.00 45.86 3.25
3911 3985 0.749454 CTATGCCTTGGGGTCTGCAC 60.749 60.000 0.00 0.00 36.41 4.57
4018 4092 4.819630 TCTGAAGCAGAACGTAAATTGGTT 59.180 37.500 0.00 0.00 37.57 3.67
4173 4247 3.119388 CCGTAACATCGTGGGAGTTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
4187 4261 6.037172 GCAGATTCAACAGAATACCGTAACAT 59.963 38.462 0.00 0.00 32.32 2.71
4291 4365 1.000938 GTTGCAGCTGGAAGTTTGAGG 60.001 52.381 22.03 0.00 35.30 3.86
4428 4502 3.959943 ACACACACCGAAGTTAATTTGC 58.040 40.909 0.00 0.00 0.00 3.68
4438 4512 1.577468 CACTTGCTACACACACCGAA 58.423 50.000 0.00 0.00 0.00 4.30
4564 4638 9.691362 GAATTCTTACTCTCAGTATCCAGAATC 57.309 37.037 0.00 2.66 35.96 2.52
4565 4639 8.646900 GGAATTCTTACTCTCAGTATCCAGAAT 58.353 37.037 5.23 4.36 37.37 2.40
4628 4702 6.051717 GCAGAGTTTCCTGTGTATACATCAT 58.948 40.000 9.18 0.00 35.97 2.45
4769 4843 3.249091 CCGTGTGTTCTTCTCTCATCAG 58.751 50.000 0.00 0.00 0.00 2.90
4807 4881 1.276421 TCTGCCTTAGACTTGGAGCAC 59.724 52.381 0.00 0.00 0.00 4.40
4856 4930 0.459237 CGCGATCCAGAAGAAGCACT 60.459 55.000 0.00 0.00 33.34 4.40
4874 4948 8.957028 CAATTTATTAACATCAGTACCATTGCG 58.043 33.333 0.00 0.00 0.00 4.85
4893 4967 8.469200 CACATGTAGGAACATTCACCAATTTAT 58.531 33.333 0.00 0.00 44.07 1.40
4972 5046 6.771076 TGATGAAGATCCGTTGTTTTTATCG 58.229 36.000 0.00 0.00 0.00 2.92
4984 5058 6.615264 ATTTGAACATCTGATGAAGATCCG 57.385 37.500 23.59 0.00 44.24 4.18
5099 5173 7.390440 TGAATCAATACTTCCACGTTCAATCTT 59.610 33.333 0.00 0.00 0.00 2.40
5162 5236 2.929398 CAGGTTTCTTTGTTTGCACCAC 59.071 45.455 0.00 0.00 0.00 4.16
5195 5269 2.054232 TGCGTAGTTTTGGGTTTGGA 57.946 45.000 0.00 0.00 0.00 3.53
5289 5363 7.602644 GTGTACAAATCTCCTTATCAACTGTCA 59.397 37.037 0.00 0.00 0.00 3.58
5332 5406 4.755266 ATCATTACTACCTGCCGAACTT 57.245 40.909 0.00 0.00 0.00 2.66
5380 5454 5.072872 AGAGATTTCCATATCACCTTCCCAG 59.927 44.000 0.00 0.00 0.00 4.45
5698 5772 3.383761 CAACTGGTTTTGTGAGCCATTC 58.616 45.455 0.00 0.00 0.00 2.67
5936 6010 7.540055 GGTCAACTTATTGAGAATTGCTTTCAG 59.460 37.037 3.37 0.00 45.58 3.02
6233 6307 3.251484 TCATTCCACCCTCTTCTTCAGT 58.749 45.455 0.00 0.00 0.00 3.41
6294 6368 2.728180 CTAGCATGCGCCTCCGTA 59.272 61.111 13.01 0.00 39.83 4.02
6844 6918 6.839134 TGGCTCTATTTGAAGTCTGGTATCTA 59.161 38.462 0.00 0.00 0.00 1.98
7348 7422 8.226448 TGTTTTTGCAACAAGACAAACAATAAG 58.774 29.630 17.95 0.00 35.60 1.73
7358 7432 3.061161 CAGCACTGTTTTTGCAACAAGAC 59.939 43.478 0.00 0.00 42.83 3.01
7374 7448 2.751991 ACAGGTAGCTGTCAGCACT 58.248 52.632 26.23 17.37 45.56 4.40
7439 7513 4.472286 CGATTAACCAATTTGACAAGCGT 58.528 39.130 0.00 0.00 0.00 5.07
7562 7637 7.012894 TGTCAAAAGTTCAAGTGAATCCGTAAT 59.987 33.333 0.00 0.00 36.33 1.89
7567 7642 7.875971 AGTATGTCAAAAGTTCAAGTGAATCC 58.124 34.615 0.00 0.00 36.33 3.01
7717 7799 7.023575 CAGAATATTGTTGTGACTACTTTGCC 58.976 38.462 0.00 0.00 0.00 4.52
7815 7911 0.975887 TCTTGGCTTGAATTTGGGGC 59.024 50.000 0.00 0.00 0.00 5.80
7837 7933 2.802719 TCCCATCACCCAAGTTTAAGC 58.197 47.619 0.00 0.00 0.00 3.09
7994 8096 6.071952 CCAAAAGTTATGCTAGTGTCAACCAT 60.072 38.462 0.00 0.00 0.00 3.55
8000 8102 5.941948 ACACCAAAAGTTATGCTAGTGTC 57.058 39.130 0.00 0.00 0.00 3.67
8205 8307 1.045911 CCCTGGAGTAGCACCCTCTC 61.046 65.000 0.00 0.00 0.00 3.20
8209 8311 0.400093 ATACCCCTGGAGTAGCACCC 60.400 60.000 0.00 0.00 0.00 4.61
8210 8312 0.759346 CATACCCCTGGAGTAGCACC 59.241 60.000 0.00 0.00 0.00 5.01
8301 8418 5.511545 GGAACCTGACACAAGAAGTAGACAT 60.512 44.000 0.00 0.00 0.00 3.06
8488 8605 0.614979 TAGAACCTCCGAGGCAAGCT 60.615 55.000 14.86 8.90 39.63 3.74
8495 8612 0.395862 TGCTCCCTAGAACCTCCGAG 60.396 60.000 0.00 0.00 0.00 4.63
8498 8615 0.107643 GCATGCTCCCTAGAACCTCC 59.892 60.000 11.37 0.00 0.00 4.30
8553 8670 0.463204 CTGGCACTGATCTCGTCCAT 59.537 55.000 0.00 0.00 0.00 3.41
8608 8725 4.641645 TTGGTCAGGCGCACAGGG 62.642 66.667 10.83 0.00 0.00 4.45
8677 8794 4.455606 GTTAGGATCCAGCAAACTAGCAT 58.544 43.478 15.82 0.00 36.85 3.79
8755 8872 4.060900 CGGAAGTGCGTCTATAGTAGGTA 58.939 47.826 0.00 0.00 0.00 3.08
8792 8909 2.185004 AGCGACATAAACACAAGGCT 57.815 45.000 0.00 0.00 0.00 4.58
8857 8974 7.553760 GGACATGGCATTTCAATCCTTTAATTT 59.446 33.333 15.00 0.00 0.00 1.82
8876 8993 3.455910 TCCAAGGATTAGAGTGGACATGG 59.544 47.826 0.00 0.00 35.22 3.66
8905 9022 2.088104 TCTTGGCGAGACCCTCATAT 57.912 50.000 0.00 0.00 37.83 1.78
8906 9023 1.860641 TTCTTGGCGAGACCCTCATA 58.139 50.000 3.27 0.00 37.83 2.15
8931 9048 5.241403 TGTGTCCATATTGACCTGACTTT 57.759 39.130 4.59 0.00 34.25 2.66
9026 9148 1.227556 CCAGCCATGTAGGTACCGC 60.228 63.158 6.18 2.36 40.61 5.68
9033 9155 2.617308 CTGCATTTCTCCAGCCATGTAG 59.383 50.000 0.00 0.00 0.00 2.74
9043 9165 4.382345 CAGATTTTCCCTGCATTTCTCC 57.618 45.455 0.00 0.00 0.00 3.71
9066 9204 3.834813 TGCAGAAGAGTCAGACCACTTAT 59.165 43.478 9.66 5.37 0.00 1.73
9089 9289 6.019881 GTGTACACAACTTTTTCCTGCATTTC 60.020 38.462 21.14 0.00 0.00 2.17
9110 9310 4.179361 ACCACTTCGGGTCGTGTA 57.821 55.556 0.00 0.00 35.96 2.90
9186 9394 0.612732 TTGCTCAGAGCCCCAATTGG 60.613 55.000 20.16 18.21 41.51 3.16
9251 9462 2.643304 ACCCCCAGAGAAAGTTACCTTC 59.357 50.000 0.00 0.00 0.00 3.46
9421 9632 5.678616 GCAGTTGTTAAAAGAAGGCAGTTCA 60.679 40.000 1.32 0.00 37.67 3.18
9478 9690 8.654485 TTGTTTAGTGTAGTAGGTTCCTATCA 57.346 34.615 1.73 0.85 0.00 2.15
9584 9799 1.673337 GGTTACCCGTGGCTTCACC 60.673 63.158 0.00 0.00 38.11 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.