Multiple sequence alignment - TraesCS2D01G387900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G387900 chr2D 100.000 4813 0 0 1 4813 493195194 493200006 0.000000e+00 8889.0
1 TraesCS2D01G387900 chr2D 91.324 899 33 17 1 897 87414134 87414989 0.000000e+00 1186.0
2 TraesCS2D01G387900 chr2B 94.384 4149 159 32 701 4813 581591868 581595978 0.000000e+00 6303.0
3 TraesCS2D01G387900 chr2B 95.603 705 29 2 1 705 581584704 581585406 0.000000e+00 1129.0
4 TraesCS2D01G387900 chr2A 96.230 1459 35 8 2392 3848 640225657 640224217 0.000000e+00 2372.0
5 TraesCS2D01G387900 chr2A 88.889 1449 101 36 918 2347 640227299 640225892 0.000000e+00 1729.0
6 TraesCS2D01G387900 chr2A 91.194 988 48 16 3842 4813 640224187 640223223 0.000000e+00 1306.0
7 TraesCS2D01G387900 chr2A 90.616 714 35 6 6 717 733429982 733429299 0.000000e+00 918.0
8 TraesCS2D01G387900 chr2A 95.349 43 1 1 700 741 733429275 733429233 3.110000e-07 67.6
9 TraesCS2D01G387900 chr1A 86.250 240 27 4 23 257 514551675 514551913 6.180000e-64 255.0
10 TraesCS2D01G387900 chr1A 84.615 169 24 2 398 566 34933866 34933700 2.980000e-37 167.0
11 TraesCS2D01G387900 chr1B 82.917 240 36 4 23 257 564163300 564163539 1.360000e-50 211.0
12 TraesCS2D01G387900 chr1D 83.500 200 30 3 421 619 49977899 49977702 2.960000e-42 183.0
13 TraesCS2D01G387900 chr1D 85.455 55 8 0 843 897 408741749 408741803 1.870000e-04 58.4
14 TraesCS2D01G387900 chr5B 100.000 30 0 0 868 897 586815728 586815757 6.730000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G387900 chr2D 493195194 493200006 4812 False 8889.000000 8889 100.000000 1 4813 1 chr2D.!!$F2 4812
1 TraesCS2D01G387900 chr2D 87414134 87414989 855 False 1186.000000 1186 91.324000 1 897 1 chr2D.!!$F1 896
2 TraesCS2D01G387900 chr2B 581591868 581595978 4110 False 6303.000000 6303 94.384000 701 4813 1 chr2B.!!$F2 4112
3 TraesCS2D01G387900 chr2B 581584704 581585406 702 False 1129.000000 1129 95.603000 1 705 1 chr2B.!!$F1 704
4 TraesCS2D01G387900 chr2A 640223223 640227299 4076 True 1802.333333 2372 92.104333 918 4813 3 chr2A.!!$R1 3895
5 TraesCS2D01G387900 chr2A 733429233 733429982 749 True 492.800000 918 92.982500 6 741 2 chr2A.!!$R2 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 798 0.034337 CGGTCGAGGAAACCAGGAAA 59.966 55.000 0.00 0.00 36.53 3.13 F
1177 1262 0.107508 CAACAGCCAGTCGGATCCAT 60.108 55.000 13.41 0.00 0.00 3.41 F
1207 1292 1.257743 CTTCTCGACTCCCCTGTTCA 58.742 55.000 0.00 0.00 0.00 3.18 F
1456 1544 1.429423 GCTTAGTGCGCAATGGTCC 59.571 57.895 22.31 2.39 0.00 4.46 F
2959 3256 0.246635 TTAGTGCTGAAGGGAGTCGC 59.753 55.000 0.00 0.00 0.00 5.19 F
3611 3908 3.119245 CCCATTGCTGAGAACTGAATTGG 60.119 47.826 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1807 0.742281 CAACCTGGCTGTGAGATCCG 60.742 60.0 0.00 0.00 0.00 4.18 R
2372 2477 1.864669 TAGGGGTAACGGTAACCAGG 58.135 55.0 18.24 0.00 39.09 4.45 R
2373 2478 2.767960 ACATAGGGGTAACGGTAACCAG 59.232 50.0 18.24 5.44 39.09 4.00 R
3253 3550 2.223971 ACGCCGTCTTGGGAATATGTAG 60.224 50.0 0.00 0.00 38.63 2.74 R
3764 4061 1.649321 TCAGCATCCTCTTCAGTGGT 58.351 50.0 0.00 0.00 0.00 4.16 R
4716 5069 1.815817 AAAGAACCGCCCCACAATGC 61.816 55.0 0.00 0.00 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 7.042321 CCACGTGTTCTCAAATTGAGTAAAGTA 60.042 37.037 20.91 0.00 44.58 2.24
127 129 5.339008 AACGTGTAGATGGCAATAAGAGA 57.661 39.130 0.00 0.00 0.00 3.10
271 274 6.053005 AGTTAAAACTTGACATGGACGAGAA 58.947 36.000 13.80 0.00 35.21 2.87
289 292 5.875359 ACGAGAATATCAACAAAGGAAGGAC 59.125 40.000 0.00 0.00 0.00 3.85
485 488 3.241530 AGCGCAACCTGGTCCTCA 61.242 61.111 11.47 0.00 0.00 3.86
706 751 1.363145 CGACGAGAGCGAGGAAGACT 61.363 60.000 0.00 0.00 41.64 3.24
745 796 1.530013 GACGGTCGAGGAAACCAGGA 61.530 60.000 0.00 0.00 36.53 3.86
746 797 1.117142 ACGGTCGAGGAAACCAGGAA 61.117 55.000 0.00 0.00 36.53 3.36
747 798 0.034337 CGGTCGAGGAAACCAGGAAA 59.966 55.000 0.00 0.00 36.53 3.13
748 799 1.541670 CGGTCGAGGAAACCAGGAAAA 60.542 52.381 0.00 0.00 36.53 2.29
749 800 2.152016 GGTCGAGGAAACCAGGAAAAG 58.848 52.381 0.00 0.00 36.75 2.27
752 803 2.162681 CGAGGAAACCAGGAAAAGCAT 58.837 47.619 0.00 0.00 0.00 3.79
755 806 4.589908 GAGGAAACCAGGAAAAGCATAGA 58.410 43.478 0.00 0.00 0.00 1.98
805 856 1.741770 GTCAAGATCCAGCCGCGTT 60.742 57.895 4.92 0.00 0.00 4.84
823 874 1.476845 TTGCTCCTTCCCGCACAGTA 61.477 55.000 0.00 0.00 35.60 2.74
824 875 1.295423 GCTCCTTCCCGCACAGTAA 59.705 57.895 0.00 0.00 0.00 2.24
825 876 0.321298 GCTCCTTCCCGCACAGTAAA 60.321 55.000 0.00 0.00 0.00 2.01
826 877 1.679032 GCTCCTTCCCGCACAGTAAAT 60.679 52.381 0.00 0.00 0.00 1.40
827 878 2.280628 CTCCTTCCCGCACAGTAAATC 58.719 52.381 0.00 0.00 0.00 2.17
828 879 1.006832 CCTTCCCGCACAGTAAATCG 58.993 55.000 0.00 0.00 0.00 3.34
829 880 1.674817 CCTTCCCGCACAGTAAATCGT 60.675 52.381 0.00 0.00 0.00 3.73
830 881 1.659098 CTTCCCGCACAGTAAATCGTC 59.341 52.381 0.00 0.00 0.00 4.20
831 882 0.604073 TCCCGCACAGTAAATCGTCA 59.396 50.000 0.00 0.00 0.00 4.35
832 883 0.719465 CCCGCACAGTAAATCGTCAC 59.281 55.000 0.00 0.00 0.00 3.67
833 884 1.424403 CCGCACAGTAAATCGTCACA 58.576 50.000 0.00 0.00 0.00 3.58
834 885 1.390123 CCGCACAGTAAATCGTCACAG 59.610 52.381 0.00 0.00 0.00 3.66
835 886 2.058798 CGCACAGTAAATCGTCACAGT 58.941 47.619 0.00 0.00 0.00 3.55
836 887 3.239254 CGCACAGTAAATCGTCACAGTA 58.761 45.455 0.00 0.00 0.00 2.74
866 931 3.436924 TGGCTAGCGCGAACGAGA 61.437 61.111 12.10 0.00 43.93 4.04
916 993 0.260816 ACCTGCGTGGGTATCCTCTA 59.739 55.000 0.00 0.00 41.11 2.43
1115 1199 3.766691 GGCGCACTACCCCTCGAA 61.767 66.667 10.83 0.00 0.00 3.71
1177 1262 0.107508 CAACAGCCAGTCGGATCCAT 60.108 55.000 13.41 0.00 0.00 3.41
1192 1277 2.455565 CCATCCCATCCCCGCTTCT 61.456 63.158 0.00 0.00 0.00 2.85
1194 1279 2.511452 ATCCCATCCCCGCTTCTCG 61.511 63.158 0.00 0.00 38.08 4.04
1207 1292 1.257743 CTTCTCGACTCCCCTGTTCA 58.742 55.000 0.00 0.00 0.00 3.18
1424 1512 1.512734 CGGCTGTTCGCTCAATTGC 60.513 57.895 0.00 0.00 39.13 3.56
1456 1544 1.429423 GCTTAGTGCGCAATGGTCC 59.571 57.895 22.31 2.39 0.00 4.46
1471 1559 1.509923 GTCCGGTCGGTCTGGTAAG 59.490 63.158 9.36 0.00 42.90 2.34
1474 1562 2.348888 CGGTCGGTCTGGTAAGGCT 61.349 63.158 0.00 0.00 0.00 4.58
1594 1686 5.521010 CCTGTTCAGTTCGTGTTAGTTTGTA 59.479 40.000 0.00 0.00 0.00 2.41
1615 1707 4.634184 ATGATCAGCAGCTGTTGATTTC 57.366 40.909 36.63 28.58 44.27 2.17
1616 1708 2.751259 TGATCAGCAGCTGTTGATTTCC 59.249 45.455 36.63 26.99 44.27 3.13
1622 1714 3.503748 AGCAGCTGTTGATTTCCTGTAAC 59.496 43.478 16.64 0.00 0.00 2.50
1715 1807 2.643272 CATCCATCTGCGCATGGC 59.357 61.111 22.60 0.00 42.97 4.40
1781 1876 5.543405 AGTTCCCATTGTTTGATTTCCATGA 59.457 36.000 0.00 0.00 0.00 3.07
1796 1891 2.642311 TCCATGATGGGTTGTAGTGTGT 59.358 45.455 12.26 0.00 38.32 3.72
1802 1897 3.569194 TGGGTTGTAGTGTGTTGATGT 57.431 42.857 0.00 0.00 0.00 3.06
1902 2000 2.359602 CCAGCACACAGGAGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
1932 2030 6.150140 AGGTTTGATTCTGCTCTGTTATGTTC 59.850 38.462 0.00 0.00 0.00 3.18
1941 2039 6.650807 TCTGCTCTGTTATGTTCGAATTTCTT 59.349 34.615 0.00 0.00 0.00 2.52
2100 2202 8.390921 ACTCTTTAATTTTGGATGTTAGGAGGA 58.609 33.333 0.00 0.00 0.00 3.71
2101 2203 8.807948 TCTTTAATTTTGGATGTTAGGAGGAG 57.192 34.615 0.00 0.00 0.00 3.69
2102 2204 7.834181 TCTTTAATTTTGGATGTTAGGAGGAGG 59.166 37.037 0.00 0.00 0.00 4.30
2186 2288 6.378848 ACCACAACAGGTTTGTGTTTAGTAAT 59.621 34.615 14.34 0.00 46.05 1.89
2187 2289 7.093684 ACCACAACAGGTTTGTGTTTAGTAATT 60.094 33.333 14.34 0.00 46.05 1.40
2338 2443 4.623167 CACCATTTCTCTACTCTTGACACG 59.377 45.833 0.00 0.00 0.00 4.49
2347 2452 2.681706 ACTCTTGACACGCTGAATGAG 58.318 47.619 0.00 0.00 0.00 2.90
2372 2477 9.968870 AGATAACTGAATTTTAGACCGATACTC 57.031 33.333 0.00 0.00 0.00 2.59
2373 2478 9.194271 GATAACTGAATTTTAGACCGATACTCC 57.806 37.037 0.00 0.00 0.00 3.85
2496 2793 5.011125 TCCTGTTTGAACTCTGAACTCCTAG 59.989 44.000 0.00 0.00 0.00 3.02
2810 3107 1.178276 CCACCTACTCTCGCTTCTGT 58.822 55.000 0.00 0.00 0.00 3.41
2959 3256 0.246635 TTAGTGCTGAAGGGAGTCGC 59.753 55.000 0.00 0.00 0.00 5.19
3531 3828 4.337060 CGCGTCGATATCGGCCCA 62.337 66.667 23.08 1.95 41.58 5.36
3611 3908 3.119245 CCCATTGCTGAGAACTGAATTGG 60.119 47.826 0.00 0.00 0.00 3.16
3798 4095 1.829222 TGCTGATGCTGACTGAGATGA 59.171 47.619 0.00 0.00 40.48 2.92
3882 4215 7.368198 TCTTGGGGTTTTAGCAAGTTTATTT 57.632 32.000 0.00 0.00 0.00 1.40
4023 4361 1.202348 GCAAAGAAAATCCGTCCTGGG 59.798 52.381 0.00 0.00 38.76 4.45
4133 4471 8.919145 GCTATCCTTCCTATAGTGTGCTTATAT 58.081 37.037 0.00 0.00 30.91 0.86
4173 4511 2.351418 GTGCTTCCTTTGCCAACAAAAC 59.649 45.455 0.00 0.00 44.90 2.43
4271 4623 9.751542 GTATACAAATTACTAGCTCATGTGAGT 57.248 33.333 11.35 0.00 43.85 3.41
4333 4685 3.181427 ACCTATTTTTACCACCACCAGCA 60.181 43.478 0.00 0.00 0.00 4.41
4355 4707 7.864379 CAGCACTTCAAACTTTACTCATCAATT 59.136 33.333 0.00 0.00 0.00 2.32
4356 4708 7.864379 AGCACTTCAAACTTTACTCATCAATTG 59.136 33.333 0.00 0.00 0.00 2.32
4357 4709 7.358683 GCACTTCAAACTTTACTCATCAATTGC 60.359 37.037 0.00 0.00 0.00 3.56
4361 4713 6.489700 TCAAACTTTACTCATCAATTGCCAGA 59.510 34.615 0.00 0.00 0.00 3.86
4364 4716 7.559590 ACTTTACTCATCAATTGCCAGATAC 57.440 36.000 0.00 0.00 0.00 2.24
4477 4830 0.179045 GCTCAACGATGGCAGGGTAT 60.179 55.000 0.00 0.00 0.00 2.73
4525 4878 2.617774 GAGCATCAATCTTCTCCTTGCC 59.382 50.000 0.00 0.00 33.17 4.52
4716 5069 1.197430 AGCCTCTCAACCACCTCCAG 61.197 60.000 0.00 0.00 0.00 3.86
4731 5084 2.990967 CAGCATTGTGGGGCGGTT 60.991 61.111 0.00 0.00 34.54 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 5.172934 ACACGTTATTGTCATATTCACGGT 58.827 37.500 0.00 0.00 0.00 4.83
261 264 5.989477 TCCTTTGTTGATATTCTCGTCCAT 58.011 37.500 0.00 0.00 0.00 3.41
271 274 6.542821 TCTTGTGTCCTTCCTTTGTTGATAT 58.457 36.000 0.00 0.00 0.00 1.63
289 292 4.487948 TCGTCCGTAACCTTTATCTTGTG 58.512 43.478 0.00 0.00 0.00 3.33
706 751 3.712907 GGCACGCAACCTCCCCTA 61.713 66.667 0.00 0.00 0.00 3.53
767 818 1.202200 CGTGGAGGAGTAGCTTTCTCG 60.202 57.143 0.00 0.00 33.26 4.04
805 856 1.476845 TTACTGTGCGGGAAGGAGCA 61.477 55.000 0.00 0.00 41.55 4.26
823 874 4.688879 TCAGCGATTTTACTGTGACGATTT 59.311 37.500 0.00 0.00 35.37 2.17
824 875 4.242475 TCAGCGATTTTACTGTGACGATT 58.758 39.130 0.00 0.00 35.37 3.34
825 876 3.845178 TCAGCGATTTTACTGTGACGAT 58.155 40.909 0.00 0.00 35.37 3.73
826 877 3.242518 CTCAGCGATTTTACTGTGACGA 58.757 45.455 0.00 0.00 35.37 4.20
827 878 2.345641 CCTCAGCGATTTTACTGTGACG 59.654 50.000 0.00 0.00 35.37 4.35
828 879 3.123621 CACCTCAGCGATTTTACTGTGAC 59.876 47.826 0.00 0.00 35.37 3.67
829 880 3.325870 CACCTCAGCGATTTTACTGTGA 58.674 45.455 0.00 0.00 35.37 3.58
830 881 2.416547 CCACCTCAGCGATTTTACTGTG 59.583 50.000 0.00 0.00 35.37 3.66
831 882 2.699954 CCACCTCAGCGATTTTACTGT 58.300 47.619 0.00 0.00 35.37 3.55
832 883 1.398390 GCCACCTCAGCGATTTTACTG 59.602 52.381 0.00 0.00 35.15 2.74
833 884 1.279271 AGCCACCTCAGCGATTTTACT 59.721 47.619 0.00 0.00 34.64 2.24
834 885 1.739067 AGCCACCTCAGCGATTTTAC 58.261 50.000 0.00 0.00 34.64 2.01
835 886 2.741878 GCTAGCCACCTCAGCGATTTTA 60.742 50.000 2.29 0.00 34.64 1.52
836 887 2.014068 GCTAGCCACCTCAGCGATTTT 61.014 52.381 2.29 0.00 34.64 1.82
866 931 0.107831 TAACAGTCGCACAAAGGGCT 59.892 50.000 0.00 0.00 0.00 5.19
916 993 0.882042 CTGCTGCCGACAGTCAGTTT 60.882 55.000 12.57 0.00 46.30 2.66
1115 1199 1.202818 GGAGGAGGAAGTTGTGCTGTT 60.203 52.381 0.00 0.00 0.00 3.16
1177 1262 3.154473 CGAGAAGCGGGGATGGGA 61.154 66.667 0.00 0.00 36.03 4.37
1192 1277 2.927580 GCGTGAACAGGGGAGTCGA 61.928 63.158 0.00 0.00 0.00 4.20
1194 1279 2.047179 GGCGTGAACAGGGGAGTC 60.047 66.667 0.00 0.00 0.00 3.36
1343 1428 1.673928 CCTCCTCATCCTCCTCCCCT 61.674 65.000 0.00 0.00 0.00 4.79
1344 1429 1.152139 CCTCCTCATCCTCCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
1345 1430 1.152139 CCCTCCTCATCCTCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
1442 1530 4.329545 ACCGGACCATTGCGCACT 62.330 61.111 11.12 0.00 34.73 4.40
1448 1536 1.447838 CAGACCGACCGGACCATTG 60.448 63.158 16.07 0.15 38.96 2.82
1454 1542 1.679977 CCTTACCAGACCGACCGGA 60.680 63.158 16.07 0.00 38.96 5.14
1455 1543 2.890371 CCTTACCAGACCGACCGG 59.110 66.667 6.94 6.94 42.03 5.28
1456 1544 1.885163 AAGCCTTACCAGACCGACCG 61.885 60.000 0.00 0.00 0.00 4.79
1471 1559 2.287970 CCAGAACCAAAACCGTTAAGCC 60.288 50.000 0.00 0.00 0.00 4.35
1474 1562 2.359531 CTGCCAGAACCAAAACCGTTAA 59.640 45.455 0.00 0.00 0.00 2.01
1569 1661 4.395959 AACTAACACGAACTGAACAGGA 57.604 40.909 6.76 0.00 0.00 3.86
1594 1686 3.380637 GGAAATCAACAGCTGCTGATCAT 59.619 43.478 34.28 20.91 35.18 2.45
1616 1708 3.196469 TCTCCTCCTGAATGCAGTTACAG 59.804 47.826 0.00 0.00 40.63 2.74
1622 1714 1.413445 CTCCTCTCCTCCTGAATGCAG 59.587 57.143 0.00 0.00 41.93 4.41
1695 1787 1.282875 CATGCGCAGATGGATGCTG 59.717 57.895 18.32 1.10 44.24 4.41
1696 1788 1.897137 CCATGCGCAGATGGATGCT 60.897 57.895 22.90 0.00 45.24 3.79
1697 1789 2.643272 CCATGCGCAGATGGATGC 59.357 61.111 22.90 0.00 45.24 3.91
1715 1807 0.742281 CAACCTGGCTGTGAGATCCG 60.742 60.000 0.00 0.00 0.00 4.18
1781 1876 4.098914 ACATCAACACACTACAACCCAT 57.901 40.909 0.00 0.00 0.00 4.00
1796 1891 4.406456 ACCCAAATCAGCTACAACATCAA 58.594 39.130 0.00 0.00 0.00 2.57
1802 1897 5.606348 AAACAAACCCAAATCAGCTACAA 57.394 34.783 0.00 0.00 0.00 2.41
1902 2000 2.555757 AGAGCAGAATCAAACCTGTTGC 59.444 45.455 0.00 0.00 33.19 4.17
1932 2030 8.487176 CCCACAATTTTCAAGTAAAGAAATTCG 58.513 33.333 0.00 0.00 35.17 3.34
2100 2202 5.713861 CCTTCATCATTTGTTTCTTCTCCCT 59.286 40.000 0.00 0.00 0.00 4.20
2101 2203 5.478332 ACCTTCATCATTTGTTTCTTCTCCC 59.522 40.000 0.00 0.00 0.00 4.30
2102 2204 6.581171 ACCTTCATCATTTGTTTCTTCTCC 57.419 37.500 0.00 0.00 0.00 3.71
2268 2373 4.808895 GCATGACACTGATTACATACCGAA 59.191 41.667 0.00 0.00 0.00 4.30
2338 2443 9.928236 GTCTAAAATTCAGTTATCTCATTCAGC 57.072 33.333 0.00 0.00 0.00 4.26
2347 2452 9.194271 GGAGTATCGGTCTAAAATTCAGTTATC 57.806 37.037 0.00 0.00 34.37 1.75
2372 2477 1.864669 TAGGGGTAACGGTAACCAGG 58.135 55.000 18.24 0.00 39.09 4.45
2373 2478 2.767960 ACATAGGGGTAACGGTAACCAG 59.232 50.000 18.24 5.44 39.09 4.00
2422 2718 5.135508 AGTATCACCATACATCTTACCGC 57.864 43.478 0.00 0.00 37.89 5.68
2471 2768 4.349342 AGGAGTTCAGAGTTCAAACAGGAT 59.651 41.667 0.00 0.00 0.00 3.24
2496 2793 4.890088 TCACACTGTACCAACCAGTTATC 58.110 43.478 0.00 0.00 41.10 1.75
2810 3107 3.304391 GGTTGTAATTGTCAAGAAGCGCA 60.304 43.478 11.47 0.00 0.00 6.09
2959 3256 5.922053 TGAAGTCATCATAGTCTTGGGATG 58.078 41.667 0.00 0.00 38.73 3.51
3253 3550 2.223971 ACGCCGTCTTGGGAATATGTAG 60.224 50.000 0.00 0.00 38.63 2.74
3328 3625 7.011016 TGGAACATGTTAGATGCATTACTTACG 59.989 37.037 11.95 0.00 0.00 3.18
3531 3828 2.800544 GCACTTGACGTTCACTGTGTAT 59.199 45.455 7.79 0.00 35.16 2.29
3611 3908 1.209019 AGCAGGTCATGAGTCATCACC 59.791 52.381 17.92 17.92 38.57 4.02
3764 4061 1.649321 TCAGCATCCTCTTCAGTGGT 58.351 50.000 0.00 0.00 0.00 4.16
3766 4063 1.941294 GCATCAGCATCCTCTTCAGTG 59.059 52.381 0.00 0.00 41.58 3.66
3798 4095 6.939163 AGCTCATGACACAGAAAGTTAAATCT 59.061 34.615 0.00 0.00 0.00 2.40
3839 4136 6.128007 CCCAAGAAACGTTCTATGCTATGTTT 60.128 38.462 0.00 0.00 39.61 2.83
3840 4137 5.354234 CCCAAGAAACGTTCTATGCTATGTT 59.646 40.000 0.00 0.00 39.61 2.71
4013 4351 1.980052 CTGTAAAGCCCAGGACGGA 59.020 57.895 0.00 0.00 36.56 4.69
4023 4361 3.239861 AGCACCTGAGCTGTAAAGC 57.760 52.632 0.00 0.00 44.66 3.51
4133 4471 7.094377 GGAAGCACACTAATTGGAACTTAATCA 60.094 37.037 0.00 0.00 0.00 2.57
4134 4472 7.121315 AGGAAGCACACTAATTGGAACTTAATC 59.879 37.037 0.00 0.00 0.00 1.75
4222 4574 9.860650 ATACATGAAAATGGTGCCTACTATTTA 57.139 29.630 0.00 0.00 44.20 1.40
4271 4623 4.215399 CAGTTATGCCTTTCTTTTGTCGGA 59.785 41.667 0.00 0.00 0.00 4.55
4333 4685 7.147976 GGCAATTGATGAGTAAAGTTTGAAGT 58.852 34.615 10.34 0.00 0.00 3.01
4357 4709 2.620251 TTCTCCAATGCCGTATCTGG 57.380 50.000 0.00 0.00 0.00 3.86
4361 4713 7.404671 AATTTAGTTTTCTCCAATGCCGTAT 57.595 32.000 0.00 0.00 0.00 3.06
4364 4716 6.389906 AGAAATTTAGTTTTCTCCAATGCCG 58.610 36.000 0.00 0.00 41.01 5.69
4441 4794 5.447573 GTTGAGCTCTTGATTTTGACAGAC 58.552 41.667 16.19 0.00 0.00 3.51
4444 4797 4.126437 TCGTTGAGCTCTTGATTTTGACA 58.874 39.130 16.19 0.00 0.00 3.58
4477 4830 3.749064 GCTGCTCCTCGGACGTGA 61.749 66.667 0.00 0.00 0.00 4.35
4525 4878 2.753452 AGGTGAGAATGCAAATGCTCAG 59.247 45.455 6.97 0.00 42.66 3.35
4716 5069 1.815817 AAAGAACCGCCCCACAATGC 61.816 55.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.