Multiple sequence alignment - TraesCS2D01G386600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G386600 | chr2D | 100.000 | 7526 | 0 | 0 | 806 | 8331 | 491802220 | 491809745 | 0.000000e+00 | 13899.0 |
1 | TraesCS2D01G386600 | chr2D | 100.000 | 394 | 0 | 0 | 1 | 394 | 491801415 | 491801808 | 0.000000e+00 | 728.0 |
2 | TraesCS2D01G386600 | chr2D | 92.857 | 70 | 3 | 1 | 1456 | 1523 | 79056232 | 79056163 | 5.320000e-17 | 100.0 |
3 | TraesCS2D01G386600 | chr2D | 89.231 | 65 | 7 | 0 | 8244 | 8308 | 506172025 | 506172089 | 1.930000e-11 | 82.4 |
4 | TraesCS2D01G386600 | chr2A | 97.712 | 7344 | 115 | 27 | 806 | 8128 | 636904038 | 636911349 | 0.000000e+00 | 12582.0 |
5 | TraesCS2D01G386600 | chr2A | 96.606 | 383 | 7 | 2 | 1 | 380 | 636903117 | 636903496 | 1.530000e-176 | 630.0 |
6 | TraesCS2D01G386600 | chr2A | 96.139 | 259 | 10 | 0 | 1198 | 1456 | 232387130 | 232387388 | 2.780000e-114 | 424.0 |
7 | TraesCS2D01G386600 | chr2A | 79.008 | 262 | 43 | 8 | 2613 | 2870 | 726594395 | 726594648 | 1.440000e-37 | 169.0 |
8 | TraesCS2D01G386600 | chr2A | 91.892 | 74 | 4 | 1 | 1450 | 1521 | 141506399 | 141506472 | 1.480000e-17 | 102.0 |
9 | TraesCS2D01G386600 | chr2B | 97.963 | 4565 | 76 | 7 | 806 | 5365 | 576084772 | 576089324 | 0.000000e+00 | 7899.0 |
10 | TraesCS2D01G386600 | chr2B | 96.461 | 2713 | 70 | 8 | 5503 | 8191 | 576089730 | 576092440 | 0.000000e+00 | 4455.0 |
11 | TraesCS2D01G386600 | chr2B | 95.965 | 347 | 5 | 1 | 1 | 338 | 576083807 | 576084153 | 9.450000e-154 | 555.0 |
12 | TraesCS2D01G386600 | chr2B | 98.611 | 144 | 2 | 0 | 5364 | 5507 | 576089486 | 576089629 | 1.070000e-63 | 255.0 |
13 | TraesCS2D01G386600 | chr2B | 95.652 | 69 | 2 | 1 | 1456 | 1523 | 122742494 | 122742426 | 8.840000e-20 | 110.0 |
14 | TraesCS2D01G386600 | chr2B | 91.935 | 62 | 4 | 1 | 8250 | 8311 | 662900006 | 662899946 | 1.490000e-12 | 86.1 |
15 | TraesCS2D01G386600 | chr7B | 87.685 | 609 | 53 | 11 | 3622 | 4216 | 584316865 | 584317465 | 0.000000e+00 | 689.0 |
16 | TraesCS2D01G386600 | chr7A | 95.785 | 261 | 11 | 0 | 1195 | 1455 | 595822975 | 595822715 | 1.000000e-113 | 422.0 |
17 | TraesCS2D01G386600 | chr7A | 80.159 | 126 | 17 | 4 | 2621 | 2744 | 55130127 | 55130246 | 4.140000e-13 | 87.9 |
18 | TraesCS2D01G386600 | chr7A | 93.333 | 60 | 3 | 1 | 8252 | 8311 | 128829523 | 128829465 | 4.140000e-13 | 87.9 |
19 | TraesCS2D01G386600 | chr6A | 95.131 | 267 | 13 | 0 | 1189 | 1455 | 599623039 | 599623305 | 1.000000e-113 | 422.0 |
20 | TraesCS2D01G386600 | chr6A | 77.305 | 282 | 50 | 9 | 2615 | 2892 | 186238648 | 186238919 | 4.030000e-33 | 154.0 |
21 | TraesCS2D01G386600 | chr1A | 95.076 | 264 | 12 | 1 | 1193 | 1455 | 533465019 | 533464756 | 1.670000e-111 | 414.0 |
22 | TraesCS2D01G386600 | chr1A | 92.063 | 126 | 10 | 0 | 5463 | 5588 | 218526967 | 218526842 | 2.390000e-40 | 178.0 |
23 | TraesCS2D01G386600 | chr1A | 89.744 | 78 | 7 | 1 | 1450 | 1526 | 116698461 | 116698538 | 1.910000e-16 | 99.0 |
24 | TraesCS2D01G386600 | chr4D | 96.047 | 253 | 10 | 0 | 1203 | 1455 | 252186814 | 252187066 | 6.020000e-111 | 412.0 |
25 | TraesCS2D01G386600 | chr4D | 90.226 | 133 | 11 | 2 | 5463 | 5594 | 29833611 | 29833480 | 1.110000e-38 | 172.0 |
26 | TraesCS2D01G386600 | chr3B | 94.118 | 272 | 13 | 2 | 1185 | 1456 | 144814327 | 144814595 | 2.160000e-110 | 411.0 |
27 | TraesCS2D01G386600 | chr3B | 92.063 | 126 | 10 | 0 | 5463 | 5588 | 42630944 | 42630819 | 2.390000e-40 | 178.0 |
28 | TraesCS2D01G386600 | chr3B | 76.953 | 256 | 51 | 6 | 2620 | 2874 | 664910910 | 664911158 | 1.130000e-28 | 139.0 |
29 | TraesCS2D01G386600 | chr5A | 95.312 | 256 | 11 | 1 | 1200 | 1455 | 477975540 | 477975286 | 1.010000e-108 | 405.0 |
30 | TraesCS2D01G386600 | chr5A | 76.800 | 125 | 20 | 6 | 2623 | 2743 | 248527483 | 248527602 | 2.510000e-05 | 62.1 |
31 | TraesCS2D01G386600 | chr7D | 91.065 | 291 | 22 | 3 | 4053 | 4342 | 540858154 | 540858441 | 2.820000e-104 | 390.0 |
32 | TraesCS2D01G386600 | chr7D | 92.969 | 256 | 18 | 0 | 3622 | 3877 | 540857895 | 540858150 | 2.840000e-99 | 374.0 |
33 | TraesCS2D01G386600 | chr7D | 92.188 | 64 | 4 | 1 | 8249 | 8312 | 610805274 | 610805336 | 1.150000e-13 | 89.8 |
34 | TraesCS2D01G386600 | chr3D | 92.857 | 126 | 9 | 0 | 5463 | 5588 | 426451985 | 426451860 | 5.140000e-42 | 183.0 |
35 | TraesCS2D01G386600 | chr3D | 92.063 | 126 | 10 | 0 | 5463 | 5588 | 25133061 | 25132936 | 2.390000e-40 | 178.0 |
36 | TraesCS2D01G386600 | chr3D | 92.063 | 126 | 10 | 0 | 5463 | 5588 | 71517804 | 71517679 | 2.390000e-40 | 178.0 |
37 | TraesCS2D01G386600 | chr3D | 89.706 | 68 | 6 | 1 | 8244 | 8311 | 210615441 | 210615375 | 1.490000e-12 | 86.1 |
38 | TraesCS2D01G386600 | chr3A | 92.857 | 126 | 9 | 0 | 5463 | 5588 | 34532575 | 34532450 | 5.140000e-42 | 183.0 |
39 | TraesCS2D01G386600 | chr3A | 91.026 | 78 | 4 | 2 | 1450 | 1524 | 509865334 | 509865411 | 1.480000e-17 | 102.0 |
40 | TraesCS2D01G386600 | chr6B | 91.781 | 73 | 4 | 1 | 1449 | 1519 | 537553913 | 537553841 | 5.320000e-17 | 100.0 |
41 | TraesCS2D01G386600 | chr6B | 92.063 | 63 | 4 | 1 | 8249 | 8311 | 288654618 | 288654679 | 4.140000e-13 | 87.9 |
42 | TraesCS2D01G386600 | chr6B | 91.667 | 60 | 4 | 1 | 8252 | 8311 | 459599615 | 459599673 | 1.930000e-11 | 82.4 |
43 | TraesCS2D01G386600 | chr6B | 94.737 | 38 | 2 | 0 | 2620 | 2657 | 615551908 | 615551871 | 9.030000e-05 | 60.2 |
44 | TraesCS2D01G386600 | chr4B | 90.000 | 80 | 5 | 3 | 1456 | 1534 | 189421865 | 189421788 | 5.320000e-17 | 100.0 |
45 | TraesCS2D01G386600 | chr4A | 88.750 | 80 | 4 | 3 | 8229 | 8308 | 12207275 | 12207349 | 8.900000e-15 | 93.5 |
46 | TraesCS2D01G386600 | chr5B | 92.982 | 57 | 4 | 0 | 8252 | 8308 | 588539080 | 588539136 | 5.360000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G386600 | chr2D | 491801415 | 491809745 | 8330 | False | 7313.5 | 13899 | 100.000 | 1 | 8331 | 2 | chr2D.!!$F2 | 8330 |
1 | TraesCS2D01G386600 | chr2A | 636903117 | 636911349 | 8232 | False | 6606.0 | 12582 | 97.159 | 1 | 8128 | 2 | chr2A.!!$F4 | 8127 |
2 | TraesCS2D01G386600 | chr2B | 576083807 | 576092440 | 8633 | False | 3291.0 | 7899 | 97.250 | 1 | 8191 | 4 | chr2B.!!$F1 | 8190 |
3 | TraesCS2D01G386600 | chr7B | 584316865 | 584317465 | 600 | False | 689.0 | 689 | 87.685 | 3622 | 4216 | 1 | chr7B.!!$F1 | 594 |
4 | TraesCS2D01G386600 | chr7D | 540857895 | 540858441 | 546 | False | 382.0 | 390 | 92.017 | 3622 | 4342 | 2 | chr7D.!!$F2 | 720 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
84 | 85 | 1.974236 | CCTCCTCCACATGGTAGATCC | 59.026 | 57.143 | 0.00 | 0.00 | 36.34 | 3.36 | F |
1005 | 1568 | 3.058983 | TGAAAGTTACACGAGCAATGCAG | 60.059 | 43.478 | 8.35 | 3.33 | 0.00 | 4.41 | F |
1554 | 2117 | 4.788100 | CAGTCGCGAAAACAATCCAAATAG | 59.212 | 41.667 | 12.06 | 0.00 | 0.00 | 1.73 | F |
1809 | 2372 | 3.062042 | CCAATGCAAGTGAAAAAGGAGC | 58.938 | 45.455 | 0.00 | 0.00 | 30.28 | 4.70 | F |
1868 | 2431 | 4.141287 | TGTTCACCTGGTATGGAAACTTG | 58.859 | 43.478 | 0.00 | 0.00 | 32.09 | 3.16 | F |
3697 | 4268 | 2.145536 | GGCAACAAAGAAATGCTTGGG | 58.854 | 47.619 | 0.00 | 0.00 | 39.94 | 4.12 | F |
4429 | 5014 | 0.744414 | CTTCACCACTGGCCATACCG | 60.744 | 60.000 | 5.51 | 0.00 | 43.94 | 4.02 | F |
5588 | 6443 | 1.205893 | CTAGCACTGGGTCTGTCCTTC | 59.794 | 57.143 | 0.00 | 0.00 | 36.25 | 3.46 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1005 | 1568 | 2.066999 | ATCCGCCCAGAGACTTCCC | 61.067 | 63.158 | 0.00 | 0.0 | 0.00 | 3.97 | R |
1809 | 2372 | 2.856032 | CTGAGCCACGCTTCGTTG | 59.144 | 61.111 | 0.00 | 0.0 | 39.88 | 4.10 | R |
3005 | 3576 | 7.654568 | ACAAGTTTACACTTAAGCAAATACCC | 58.345 | 34.615 | 1.29 | 0.0 | 41.69 | 3.69 | R |
3697 | 4268 | 9.705290 | AATATTAAACCAACCTGTTCACATTTC | 57.295 | 29.630 | 0.00 | 0.0 | 0.00 | 2.17 | R |
3877 | 4449 | 8.877864 | AATCCAAGTAAATTAACTGATGGACA | 57.122 | 30.769 | 0.00 | 0.0 | 38.56 | 4.02 | R |
5609 | 6464 | 5.181748 | AGAAAGATAAGGTAAGCTGCACAG | 58.818 | 41.667 | 1.02 | 0.0 | 0.00 | 3.66 | R |
6426 | 7281 | 1.616865 | CGAAGGTCACAACTCCTACCA | 59.383 | 52.381 | 0.00 | 0.0 | 34.29 | 3.25 | R |
7437 | 8296 | 1.995484 | CTGACATTACACCTCTGCGTG | 59.005 | 52.381 | 0.00 | 0.0 | 39.75 | 5.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
84 | 85 | 1.974236 | CCTCCTCCACATGGTAGATCC | 59.026 | 57.143 | 0.00 | 0.00 | 36.34 | 3.36 |
1005 | 1568 | 3.058983 | TGAAAGTTACACGAGCAATGCAG | 60.059 | 43.478 | 8.35 | 3.33 | 0.00 | 4.41 |
1465 | 2028 | 8.124823 | GCACACATTTACTAGTACGTGTCTATA | 58.875 | 37.037 | 20.92 | 0.00 | 35.52 | 1.31 |
1554 | 2117 | 4.788100 | CAGTCGCGAAAACAATCCAAATAG | 59.212 | 41.667 | 12.06 | 0.00 | 0.00 | 1.73 |
1809 | 2372 | 3.062042 | CCAATGCAAGTGAAAAAGGAGC | 58.938 | 45.455 | 0.00 | 0.00 | 30.28 | 4.70 |
1868 | 2431 | 4.141287 | TGTTCACCTGGTATGGAAACTTG | 58.859 | 43.478 | 0.00 | 0.00 | 32.09 | 3.16 |
2090 | 2654 | 9.151471 | GTGGTAATACGATATGCATGATTACTT | 57.849 | 33.333 | 10.16 | 0.00 | 32.73 | 2.24 |
2263 | 2828 | 8.221251 | AGGGACTTTTGAATAGTTTTCTCTCTT | 58.779 | 33.333 | 0.00 | 0.00 | 27.25 | 2.85 |
3188 | 3759 | 6.837048 | TCATACAGTGGTCTAACATTAGGCTA | 59.163 | 38.462 | 3.42 | 0.00 | 35.74 | 3.93 |
3697 | 4268 | 2.145536 | GGCAACAAAGAAATGCTTGGG | 58.854 | 47.619 | 0.00 | 0.00 | 39.94 | 4.12 |
3877 | 4449 | 2.014128 | CAACACAGGTCCGTTGTCTTT | 58.986 | 47.619 | 0.00 | 0.00 | 38.14 | 2.52 |
4016 | 4588 | 3.976169 | TGCAACAAAAGAGGTACAATGC | 58.024 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
4034 | 4606 | 7.934855 | ACAATGCTGTATCATCTCTTTCTTT | 57.065 | 32.000 | 0.00 | 0.00 | 32.54 | 2.52 |
4429 | 5014 | 0.744414 | CTTCACCACTGGCCATACCG | 60.744 | 60.000 | 5.51 | 0.00 | 43.94 | 4.02 |
4602 | 5187 | 4.091549 | AGTTGGGAATCATGCATCTTGTT | 58.908 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
4706 | 5291 | 6.102006 | TCTAAAACCGTTTGAATATCAGCG | 57.898 | 37.500 | 0.00 | 0.00 | 0.00 | 5.18 |
4844 | 5429 | 9.105844 | AGCTCTGGGTGTATCAATTACTAATAT | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
4938 | 5523 | 1.629861 | TGATGGCTGGATTCAGTGTCA | 59.370 | 47.619 | 2.16 | 2.22 | 42.78 | 3.58 |
5071 | 5656 | 3.439476 | GTCTGAGCGTAGAACTGGAACTA | 59.561 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
5250 | 5835 | 2.460669 | TCTGCCAGTTCTCTGCATAGA | 58.539 | 47.619 | 0.00 | 0.00 | 40.09 | 1.98 |
5588 | 6443 | 1.205893 | CTAGCACTGGGTCTGTCCTTC | 59.794 | 57.143 | 0.00 | 0.00 | 36.25 | 3.46 |
5835 | 6690 | 3.005050 | TCCAATTGAAGTTGCTTGCTGAG | 59.995 | 43.478 | 7.12 | 0.00 | 0.00 | 3.35 |
7011 | 7868 | 2.937469 | TTGTTGTCCAAACAGTGCAG | 57.063 | 45.000 | 0.00 | 0.00 | 36.57 | 4.41 |
7037 | 7894 | 4.326413 | TCGAATCGAATTGCTGTTTCTG | 57.674 | 40.909 | 1.57 | 0.00 | 31.06 | 3.02 |
7110 | 7967 | 4.818534 | TGAGTCAACATGCTTCTGTTTC | 57.181 | 40.909 | 0.00 | 0.00 | 37.25 | 2.78 |
7367 | 8224 | 4.338879 | CAATCTTCCATCTTTGTGACCCT | 58.661 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
7437 | 8296 | 6.611381 | TGCTTTTTGATGCTCAATGTAGTAC | 58.389 | 36.000 | 0.00 | 0.00 | 36.11 | 2.73 |
7822 | 8684 | 1.255667 | TTCTCACTAGCGGGTGGGTC | 61.256 | 60.000 | 10.78 | 0.00 | 38.69 | 4.46 |
7823 | 8685 | 1.682684 | CTCACTAGCGGGTGGGTCT | 60.683 | 63.158 | 11.10 | 0.00 | 37.75 | 3.85 |
7863 | 8725 | 1.619827 | CAAAATGCAGGGAGGCTTCAA | 59.380 | 47.619 | 0.00 | 0.00 | 34.04 | 2.69 |
8120 | 9000 | 1.065854 | AGGATGTGTCTGGTGCTAAGC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
8137 | 9018 | 3.386932 | AAGCAGGGCCTAATTCATGAA | 57.613 | 42.857 | 11.26 | 11.26 | 0.00 | 2.57 |
8193 | 9074 | 6.893958 | CAGACGTATTCTGTTTCATAGCTT | 57.106 | 37.500 | 0.00 | 0.00 | 46.12 | 3.74 |
8194 | 9075 | 6.927746 | CAGACGTATTCTGTTTCATAGCTTC | 58.072 | 40.000 | 0.00 | 0.00 | 46.12 | 3.86 |
8195 | 9076 | 6.531594 | CAGACGTATTCTGTTTCATAGCTTCA | 59.468 | 38.462 | 0.00 | 0.00 | 46.12 | 3.02 |
8196 | 9077 | 7.063426 | CAGACGTATTCTGTTTCATAGCTTCAA | 59.937 | 37.037 | 0.00 | 0.00 | 46.12 | 2.69 |
8197 | 9078 | 7.602644 | AGACGTATTCTGTTTCATAGCTTCAAA | 59.397 | 33.333 | 0.00 | 0.00 | 31.12 | 2.69 |
8198 | 9079 | 7.743104 | ACGTATTCTGTTTCATAGCTTCAAAG | 58.257 | 34.615 | 0.00 | 0.00 | 0.00 | 2.77 |
8212 | 9093 | 3.636381 | CTTCAAAGCTGAACCAGAAAGC | 58.364 | 45.455 | 0.00 | 0.00 | 36.62 | 3.51 |
8213 | 9094 | 2.653726 | TCAAAGCTGAACCAGAAAGCA | 58.346 | 42.857 | 0.00 | 0.00 | 39.47 | 3.91 |
8214 | 9095 | 3.023119 | TCAAAGCTGAACCAGAAAGCAA | 58.977 | 40.909 | 0.00 | 0.00 | 39.47 | 3.91 |
8215 | 9096 | 3.067180 | TCAAAGCTGAACCAGAAAGCAAG | 59.933 | 43.478 | 0.00 | 0.00 | 39.47 | 4.01 |
8216 | 9097 | 2.645838 | AGCTGAACCAGAAAGCAAGA | 57.354 | 45.000 | 0.00 | 0.00 | 39.47 | 3.02 |
8217 | 9098 | 2.936202 | AGCTGAACCAGAAAGCAAGAA | 58.064 | 42.857 | 0.00 | 0.00 | 39.47 | 2.52 |
8218 | 9099 | 2.883386 | AGCTGAACCAGAAAGCAAGAAG | 59.117 | 45.455 | 0.00 | 0.00 | 39.47 | 2.85 |
8219 | 9100 | 2.620585 | GCTGAACCAGAAAGCAAGAAGT | 59.379 | 45.455 | 0.00 | 0.00 | 36.91 | 3.01 |
8220 | 9101 | 3.815401 | GCTGAACCAGAAAGCAAGAAGTA | 59.185 | 43.478 | 0.00 | 0.00 | 36.91 | 2.24 |
8221 | 9102 | 4.457257 | GCTGAACCAGAAAGCAAGAAGTAT | 59.543 | 41.667 | 0.00 | 0.00 | 36.91 | 2.12 |
8222 | 9103 | 5.643777 | GCTGAACCAGAAAGCAAGAAGTATA | 59.356 | 40.000 | 0.00 | 0.00 | 36.91 | 1.47 |
8223 | 9104 | 6.317391 | GCTGAACCAGAAAGCAAGAAGTATAT | 59.683 | 38.462 | 0.00 | 0.00 | 36.91 | 0.86 |
8224 | 9105 | 7.615582 | TGAACCAGAAAGCAAGAAGTATATG | 57.384 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
8225 | 9106 | 7.168219 | TGAACCAGAAAGCAAGAAGTATATGT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
8226 | 9107 | 7.665559 | TGAACCAGAAAGCAAGAAGTATATGTT | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
8227 | 9108 | 8.409358 | AACCAGAAAGCAAGAAGTATATGTTT | 57.591 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
8228 | 9109 | 9.515226 | AACCAGAAAGCAAGAAGTATATGTTTA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
8229 | 9110 | 9.515226 | ACCAGAAAGCAAGAAGTATATGTTTAA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
8230 | 9111 | 9.774742 | CCAGAAAGCAAGAAGTATATGTTTAAC | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
8258 | 9139 | 9.596308 | AAATTTTGTGTTTAGGTAATACTCCCT | 57.404 | 29.630 | 0.00 | 0.00 | 34.74 | 4.20 |
8259 | 9140 | 8.803397 | ATTTTGTGTTTAGGTAATACTCCCTC | 57.197 | 34.615 | 0.00 | 0.00 | 32.08 | 4.30 |
8260 | 9141 | 5.945144 | TGTGTTTAGGTAATACTCCCTCC | 57.055 | 43.478 | 0.00 | 0.00 | 32.08 | 4.30 |
8261 | 9142 | 5.596763 | TGTGTTTAGGTAATACTCCCTCCT | 58.403 | 41.667 | 0.00 | 0.00 | 32.08 | 3.69 |
8262 | 9143 | 6.027482 | TGTGTTTAGGTAATACTCCCTCCTT | 58.973 | 40.000 | 0.00 | 0.00 | 32.08 | 3.36 |
8263 | 9144 | 6.155737 | TGTGTTTAGGTAATACTCCCTCCTTC | 59.844 | 42.308 | 0.00 | 0.00 | 32.08 | 3.46 |
8264 | 9145 | 5.664457 | TGTTTAGGTAATACTCCCTCCTTCC | 59.336 | 44.000 | 0.00 | 0.00 | 32.08 | 3.46 |
8265 | 9146 | 3.347759 | AGGTAATACTCCCTCCTTCCC | 57.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
8266 | 9147 | 2.595380 | AGGTAATACTCCCTCCTTCCCA | 59.405 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
8267 | 9148 | 3.014807 | AGGTAATACTCCCTCCTTCCCAA | 59.985 | 47.826 | 0.00 | 0.00 | 0.00 | 4.12 |
8268 | 9149 | 3.784202 | GGTAATACTCCCTCCTTCCCAAA | 59.216 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
8269 | 9150 | 4.228895 | GGTAATACTCCCTCCTTCCCAAAA | 59.771 | 45.833 | 0.00 | 0.00 | 0.00 | 2.44 |
8270 | 9151 | 5.103643 | GGTAATACTCCCTCCTTCCCAAAAT | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 1.82 |
8271 | 9152 | 6.102174 | GGTAATACTCCCTCCTTCCCAAAATA | 59.898 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
8272 | 9153 | 6.865651 | AATACTCCCTCCTTCCCAAAATAT | 57.134 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
8273 | 9154 | 7.964730 | AATACTCCCTCCTTCCCAAAATATA | 57.035 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
8274 | 9155 | 7.964730 | ATACTCCCTCCTTCCCAAAATATAA | 57.035 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
8275 | 9156 | 6.267492 | ACTCCCTCCTTCCCAAAATATAAG | 57.733 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
8276 | 9157 | 5.134509 | ACTCCCTCCTTCCCAAAATATAAGG | 59.865 | 44.000 | 0.00 | 0.00 | 39.93 | 2.69 |
8277 | 9158 | 4.141018 | TCCCTCCTTCCCAAAATATAAGGC | 60.141 | 45.833 | 0.00 | 0.00 | 38.70 | 4.35 |
8278 | 9159 | 3.821033 | CCTCCTTCCCAAAATATAAGGCG | 59.179 | 47.826 | 0.00 | 0.00 | 38.70 | 5.52 |
8279 | 9160 | 4.461198 | CTCCTTCCCAAAATATAAGGCGT | 58.539 | 43.478 | 0.00 | 0.00 | 38.70 | 5.68 |
8280 | 9161 | 4.204012 | TCCTTCCCAAAATATAAGGCGTG | 58.796 | 43.478 | 0.00 | 0.00 | 38.70 | 5.34 |
8281 | 9162 | 4.080243 | TCCTTCCCAAAATATAAGGCGTGA | 60.080 | 41.667 | 0.00 | 0.00 | 38.70 | 4.35 |
8282 | 9163 | 4.827284 | CCTTCCCAAAATATAAGGCGTGAT | 59.173 | 41.667 | 0.00 | 0.00 | 32.66 | 3.06 |
8283 | 9164 | 5.301805 | CCTTCCCAAAATATAAGGCGTGATT | 59.698 | 40.000 | 0.00 | 0.00 | 32.66 | 2.57 |
8284 | 9165 | 5.766150 | TCCCAAAATATAAGGCGTGATTG | 57.234 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
8285 | 9166 | 5.441500 | TCCCAAAATATAAGGCGTGATTGA | 58.558 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
8286 | 9167 | 5.298276 | TCCCAAAATATAAGGCGTGATTGAC | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
8287 | 9168 | 5.299279 | CCCAAAATATAAGGCGTGATTGACT | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
8288 | 9169 | 6.201517 | CCAAAATATAAGGCGTGATTGACTG | 58.798 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
8289 | 9170 | 6.183360 | CCAAAATATAAGGCGTGATTGACTGT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
8290 | 9171 | 5.991328 | AATATAAGGCGTGATTGACTGTG | 57.009 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
8291 | 9172 | 1.438651 | TAAGGCGTGATTGACTGTGC | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
8292 | 9173 | 0.534877 | AAGGCGTGATTGACTGTGCA | 60.535 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
8293 | 9174 | 1.207593 | GGCGTGATTGACTGTGCAC | 59.792 | 57.895 | 10.75 | 10.75 | 0.00 | 4.57 |
8294 | 9175 | 1.506309 | GGCGTGATTGACTGTGCACA | 61.506 | 55.000 | 20.37 | 20.37 | 0.00 | 4.57 |
8308 | 9189 | 5.213913 | CTGTGCACAGTCTTTGATACATC | 57.786 | 43.478 | 34.04 | 0.00 | 39.09 | 3.06 |
8309 | 9190 | 3.679502 | TGTGCACAGTCTTTGATACATCG | 59.320 | 43.478 | 17.42 | 0.00 | 0.00 | 3.84 |
8310 | 9191 | 3.926527 | GTGCACAGTCTTTGATACATCGA | 59.073 | 43.478 | 13.17 | 0.00 | 0.00 | 3.59 |
8311 | 9192 | 4.388773 | GTGCACAGTCTTTGATACATCGAA | 59.611 | 41.667 | 13.17 | 0.00 | 0.00 | 3.71 |
8312 | 9193 | 4.627035 | TGCACAGTCTTTGATACATCGAAG | 59.373 | 41.667 | 11.53 | 11.53 | 45.55 | 3.79 |
8313 | 9194 | 4.627467 | GCACAGTCTTTGATACATCGAAGT | 59.373 | 41.667 | 15.64 | 0.00 | 44.82 | 3.01 |
8314 | 9195 | 5.805486 | GCACAGTCTTTGATACATCGAAGTA | 59.195 | 40.000 | 15.64 | 2.58 | 44.82 | 2.24 |
8315 | 9196 | 6.237595 | GCACAGTCTTTGATACATCGAAGTAC | 60.238 | 42.308 | 15.64 | 12.83 | 44.82 | 2.73 |
8316 | 9197 | 6.806739 | CACAGTCTTTGATACATCGAAGTACA | 59.193 | 38.462 | 15.64 | 1.38 | 44.82 | 2.90 |
8317 | 9198 | 7.489435 | CACAGTCTTTGATACATCGAAGTACAT | 59.511 | 37.037 | 15.64 | 0.00 | 44.82 | 2.29 |
8318 | 9199 | 7.489435 | ACAGTCTTTGATACATCGAAGTACATG | 59.511 | 37.037 | 15.64 | 12.73 | 44.82 | 3.21 |
8319 | 9200 | 6.980978 | AGTCTTTGATACATCGAAGTACATGG | 59.019 | 38.462 | 15.64 | 1.47 | 44.82 | 3.66 |
8320 | 9201 | 6.978659 | GTCTTTGATACATCGAAGTACATGGA | 59.021 | 38.462 | 15.64 | 0.00 | 44.82 | 3.41 |
8321 | 9202 | 7.653713 | GTCTTTGATACATCGAAGTACATGGAT | 59.346 | 37.037 | 15.64 | 0.00 | 44.82 | 3.41 |
8322 | 9203 | 8.204160 | TCTTTGATACATCGAAGTACATGGATT | 58.796 | 33.333 | 15.64 | 0.00 | 44.82 | 3.01 |
8323 | 9204 | 9.476202 | CTTTGATACATCGAAGTACATGGATTA | 57.524 | 33.333 | 2.07 | 0.00 | 41.38 | 1.75 |
8324 | 9205 | 9.825109 | TTTGATACATCGAAGTACATGGATTAA | 57.175 | 29.630 | 2.07 | 0.00 | 0.00 | 1.40 |
8325 | 9206 | 9.825109 | TTGATACATCGAAGTACATGGATTAAA | 57.175 | 29.630 | 2.07 | 0.00 | 0.00 | 1.52 |
8326 | 9207 | 9.256477 | TGATACATCGAAGTACATGGATTAAAC | 57.744 | 33.333 | 2.07 | 0.00 | 0.00 | 2.01 |
8327 | 9208 | 9.256477 | GATACATCGAAGTACATGGATTAAACA | 57.744 | 33.333 | 2.07 | 0.00 | 0.00 | 2.83 |
8328 | 9209 | 9.778741 | ATACATCGAAGTACATGGATTAAACAT | 57.221 | 29.630 | 2.07 | 0.00 | 0.00 | 2.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
84 | 85 | 2.023673 | TGTTCAGTTGAAAGGCCACAG | 58.976 | 47.619 | 5.01 | 0.00 | 35.58 | 3.66 |
1005 | 1568 | 2.066999 | ATCCGCCCAGAGACTTCCC | 61.067 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
1309 | 1872 | 8.273557 | GGTATGATATTAACTGCACACTAAACG | 58.726 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
1508 | 2071 | 6.136857 | TGTAGCATGATATATACTCCCTCCC | 58.863 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1809 | 2372 | 2.856032 | CTGAGCCACGCTTCGTTG | 59.144 | 61.111 | 0.00 | 0.00 | 39.88 | 4.10 |
1868 | 2431 | 8.748380 | AAAGAAAATAAGTGCATTAAGAGTGC | 57.252 | 30.769 | 0.00 | 0.00 | 42.81 | 4.40 |
1919 | 2482 | 5.163713 | GCTTAAGGTAGAAGCACAAGAATGG | 60.164 | 44.000 | 4.29 | 0.00 | 46.97 | 3.16 |
3005 | 3576 | 7.654568 | ACAAGTTTACACTTAAGCAAATACCC | 58.345 | 34.615 | 1.29 | 0.00 | 41.69 | 3.69 |
3697 | 4268 | 9.705290 | AATATTAAACCAACCTGTTCACATTTC | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
3877 | 4449 | 8.877864 | AATCCAAGTAAATTAACTGATGGACA | 57.122 | 30.769 | 0.00 | 0.00 | 38.56 | 4.02 |
4429 | 5014 | 6.208644 | CCTAACCAGCATTGTATTATTGTGC | 58.791 | 40.000 | 0.00 | 0.00 | 36.11 | 4.57 |
4844 | 5429 | 8.682710 | GCACCCTATTATTGTTTGTTTGATCTA | 58.317 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
4938 | 5523 | 9.498176 | AACTTACAATCGACCAGTAAATTTACT | 57.502 | 29.630 | 22.49 | 22.49 | 44.42 | 2.24 |
5609 | 6464 | 5.181748 | AGAAAGATAAGGTAAGCTGCACAG | 58.818 | 41.667 | 1.02 | 0.00 | 0.00 | 3.66 |
5835 | 6690 | 5.469760 | ACCTTTGTTTATTGCTTGCATTTCC | 59.530 | 36.000 | 0.00 | 0.00 | 0.00 | 3.13 |
6426 | 7281 | 1.616865 | CGAAGGTCACAACTCCTACCA | 59.383 | 52.381 | 0.00 | 0.00 | 34.29 | 3.25 |
6939 | 7796 | 4.899898 | AGGGATTAGGGGCAATACTTTT | 57.100 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
7037 | 7894 | 2.749800 | GCCACTTGATAGACCATTCCCC | 60.750 | 54.545 | 0.00 | 0.00 | 0.00 | 4.81 |
7437 | 8296 | 1.995484 | CTGACATTACACCTCTGCGTG | 59.005 | 52.381 | 0.00 | 0.00 | 39.75 | 5.34 |
7633 | 8495 | 6.158598 | ACAAACAGTAAATAAGCCTGCAATG | 58.841 | 36.000 | 0.00 | 0.00 | 0.00 | 2.82 |
7822 | 8684 | 3.181477 | TGTTTCAGGAATGTTTGCCACAG | 60.181 | 43.478 | 0.00 | 0.00 | 39.40 | 3.66 |
7823 | 8685 | 2.762887 | TGTTTCAGGAATGTTTGCCACA | 59.237 | 40.909 | 0.00 | 0.00 | 40.71 | 4.17 |
7863 | 8725 | 0.677288 | TGTACAACACTACAGCGGCT | 59.323 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
8074 | 8954 | 1.061857 | CGCGCACTGCATATAACAACA | 59.938 | 47.619 | 8.75 | 0.00 | 46.97 | 3.33 |
8120 | 9000 | 6.051074 | GGAATTTTTCATGAATTAGGCCCTG | 58.949 | 40.000 | 9.40 | 0.00 | 0.00 | 4.45 |
8171 | 9052 | 6.631016 | TGAAGCTATGAAACAGAATACGTCT | 58.369 | 36.000 | 0.00 | 0.00 | 36.88 | 4.18 |
8191 | 9072 | 3.067180 | TGCTTTCTGGTTCAGCTTTGAAG | 59.933 | 43.478 | 0.00 | 0.00 | 34.42 | 3.02 |
8192 | 9073 | 3.023119 | TGCTTTCTGGTTCAGCTTTGAA | 58.977 | 40.909 | 0.00 | 0.00 | 34.42 | 2.69 |
8193 | 9074 | 2.653726 | TGCTTTCTGGTTCAGCTTTGA | 58.346 | 42.857 | 0.00 | 0.00 | 34.42 | 2.69 |
8194 | 9075 | 3.067180 | TCTTGCTTTCTGGTTCAGCTTTG | 59.933 | 43.478 | 0.00 | 0.00 | 34.42 | 2.77 |
8195 | 9076 | 3.290710 | TCTTGCTTTCTGGTTCAGCTTT | 58.709 | 40.909 | 0.00 | 0.00 | 34.42 | 3.51 |
8196 | 9077 | 2.936202 | TCTTGCTTTCTGGTTCAGCTT | 58.064 | 42.857 | 0.00 | 0.00 | 34.42 | 3.74 |
8197 | 9078 | 2.645838 | TCTTGCTTTCTGGTTCAGCT | 57.354 | 45.000 | 0.00 | 0.00 | 34.42 | 4.24 |
8198 | 9079 | 2.620585 | ACTTCTTGCTTTCTGGTTCAGC | 59.379 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
8199 | 9080 | 7.335422 | ACATATACTTCTTGCTTTCTGGTTCAG | 59.665 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
8200 | 9081 | 7.168219 | ACATATACTTCTTGCTTTCTGGTTCA | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
8201 | 9082 | 7.617041 | ACATATACTTCTTGCTTTCTGGTTC | 57.383 | 36.000 | 0.00 | 0.00 | 0.00 | 3.62 |
8202 | 9083 | 8.409358 | AAACATATACTTCTTGCTTTCTGGTT | 57.591 | 30.769 | 0.00 | 0.00 | 0.00 | 3.67 |
8203 | 9084 | 9.515226 | TTAAACATATACTTCTTGCTTTCTGGT | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
8204 | 9085 | 9.774742 | GTTAAACATATACTTCTTGCTTTCTGG | 57.225 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
8232 | 9113 | 9.596308 | AGGGAGTATTACCTAAACACAAAATTT | 57.404 | 29.630 | 0.00 | 0.00 | 34.71 | 1.82 |
8233 | 9114 | 9.239551 | GAGGGAGTATTACCTAAACACAAAATT | 57.760 | 33.333 | 0.00 | 0.00 | 37.18 | 1.82 |
8234 | 9115 | 7.832685 | GGAGGGAGTATTACCTAAACACAAAAT | 59.167 | 37.037 | 0.00 | 0.00 | 37.18 | 1.82 |
8235 | 9116 | 7.017850 | AGGAGGGAGTATTACCTAAACACAAAA | 59.982 | 37.037 | 0.00 | 0.00 | 37.18 | 2.44 |
8236 | 9117 | 6.502863 | AGGAGGGAGTATTACCTAAACACAAA | 59.497 | 38.462 | 0.00 | 0.00 | 37.18 | 2.83 |
8237 | 9118 | 6.027482 | AGGAGGGAGTATTACCTAAACACAA | 58.973 | 40.000 | 0.00 | 0.00 | 37.18 | 3.33 |
8238 | 9119 | 5.596763 | AGGAGGGAGTATTACCTAAACACA | 58.403 | 41.667 | 0.00 | 0.00 | 37.18 | 3.72 |
8239 | 9120 | 6.407865 | GGAAGGAGGGAGTATTACCTAAACAC | 60.408 | 46.154 | 0.00 | 0.00 | 37.18 | 3.32 |
8240 | 9121 | 5.664457 | GGAAGGAGGGAGTATTACCTAAACA | 59.336 | 44.000 | 0.00 | 0.00 | 37.18 | 2.83 |
8241 | 9122 | 5.071519 | GGGAAGGAGGGAGTATTACCTAAAC | 59.928 | 48.000 | 0.00 | 0.00 | 37.18 | 2.01 |
8242 | 9123 | 5.222086 | GGGAAGGAGGGAGTATTACCTAAA | 58.778 | 45.833 | 0.00 | 0.00 | 37.18 | 1.85 |
8243 | 9124 | 4.235873 | TGGGAAGGAGGGAGTATTACCTAA | 59.764 | 45.833 | 0.00 | 0.00 | 37.18 | 2.69 |
8244 | 9125 | 3.801317 | TGGGAAGGAGGGAGTATTACCTA | 59.199 | 47.826 | 0.00 | 0.00 | 37.18 | 3.08 |
8245 | 9126 | 2.595380 | TGGGAAGGAGGGAGTATTACCT | 59.405 | 50.000 | 0.00 | 0.00 | 40.54 | 3.08 |
8246 | 9127 | 3.056201 | TGGGAAGGAGGGAGTATTACC | 57.944 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
8247 | 9128 | 5.446260 | TTTTGGGAAGGAGGGAGTATTAC | 57.554 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
8248 | 9129 | 7.964730 | ATATTTTGGGAAGGAGGGAGTATTA | 57.035 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
8249 | 9130 | 6.865651 | ATATTTTGGGAAGGAGGGAGTATT | 57.134 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
8250 | 9131 | 7.018650 | CCTTATATTTTGGGAAGGAGGGAGTAT | 59.981 | 40.741 | 0.00 | 0.00 | 40.88 | 2.12 |
8251 | 9132 | 6.331837 | CCTTATATTTTGGGAAGGAGGGAGTA | 59.668 | 42.308 | 0.00 | 0.00 | 40.88 | 2.59 |
8252 | 9133 | 5.134509 | CCTTATATTTTGGGAAGGAGGGAGT | 59.865 | 44.000 | 0.00 | 0.00 | 40.88 | 3.85 |
8253 | 9134 | 5.635120 | CCTTATATTTTGGGAAGGAGGGAG | 58.365 | 45.833 | 0.00 | 0.00 | 40.88 | 4.30 |
8254 | 9135 | 4.141018 | GCCTTATATTTTGGGAAGGAGGGA | 60.141 | 45.833 | 3.71 | 0.00 | 40.88 | 4.20 |
8255 | 9136 | 4.152647 | GCCTTATATTTTGGGAAGGAGGG | 58.847 | 47.826 | 3.71 | 0.00 | 40.88 | 4.30 |
8256 | 9137 | 3.821033 | CGCCTTATATTTTGGGAAGGAGG | 59.179 | 47.826 | 3.71 | 0.00 | 40.88 | 4.30 |
8257 | 9138 | 4.275936 | CACGCCTTATATTTTGGGAAGGAG | 59.724 | 45.833 | 3.71 | 2.94 | 40.88 | 3.69 |
8258 | 9139 | 4.080243 | TCACGCCTTATATTTTGGGAAGGA | 60.080 | 41.667 | 3.71 | 0.00 | 40.88 | 3.36 |
8259 | 9140 | 4.204012 | TCACGCCTTATATTTTGGGAAGG | 58.796 | 43.478 | 0.00 | 0.00 | 41.26 | 3.46 |
8260 | 9141 | 6.039270 | TCAATCACGCCTTATATTTTGGGAAG | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
8261 | 9142 | 5.888724 | TCAATCACGCCTTATATTTTGGGAA | 59.111 | 36.000 | 0.00 | 0.00 | 0.00 | 3.97 |
8262 | 9143 | 5.298276 | GTCAATCACGCCTTATATTTTGGGA | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 4.37 |
8263 | 9144 | 5.299279 | AGTCAATCACGCCTTATATTTTGGG | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 4.12 |
8264 | 9145 | 6.183360 | ACAGTCAATCACGCCTTATATTTTGG | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.28 |
8265 | 9146 | 6.688385 | CACAGTCAATCACGCCTTATATTTTG | 59.312 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
8266 | 9147 | 6.677920 | GCACAGTCAATCACGCCTTATATTTT | 60.678 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
8267 | 9148 | 5.220854 | GCACAGTCAATCACGCCTTATATTT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
8268 | 9149 | 4.273480 | GCACAGTCAATCACGCCTTATATT | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
8269 | 9150 | 3.809832 | GCACAGTCAATCACGCCTTATAT | 59.190 | 43.478 | 0.00 | 0.00 | 0.00 | 0.86 |
8270 | 9151 | 3.194861 | GCACAGTCAATCACGCCTTATA | 58.805 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
8271 | 9152 | 2.009774 | GCACAGTCAATCACGCCTTAT | 58.990 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
8272 | 9153 | 1.270571 | TGCACAGTCAATCACGCCTTA | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
8273 | 9154 | 0.534877 | TGCACAGTCAATCACGCCTT | 60.535 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
8274 | 9155 | 1.071299 | TGCACAGTCAATCACGCCT | 59.929 | 52.632 | 0.00 | 0.00 | 0.00 | 5.52 |
8275 | 9156 | 1.207593 | GTGCACAGTCAATCACGCC | 59.792 | 57.895 | 13.17 | 0.00 | 0.00 | 5.68 |
8276 | 9157 | 0.110509 | CTGTGCACAGTCAATCACGC | 60.111 | 55.000 | 34.04 | 0.00 | 39.09 | 5.34 |
8287 | 9168 | 3.679502 | CGATGTATCAAAGACTGTGCACA | 59.320 | 43.478 | 20.37 | 20.37 | 0.00 | 4.57 |
8288 | 9169 | 3.926527 | TCGATGTATCAAAGACTGTGCAC | 59.073 | 43.478 | 10.75 | 10.75 | 0.00 | 4.57 |
8289 | 9170 | 4.186856 | TCGATGTATCAAAGACTGTGCA | 57.813 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
8290 | 9171 | 4.627467 | ACTTCGATGTATCAAAGACTGTGC | 59.373 | 41.667 | 1.47 | 0.00 | 0.00 | 4.57 |
8291 | 9172 | 6.806739 | TGTACTTCGATGTATCAAAGACTGTG | 59.193 | 38.462 | 13.59 | 0.00 | 0.00 | 3.66 |
8292 | 9173 | 6.920817 | TGTACTTCGATGTATCAAAGACTGT | 58.079 | 36.000 | 13.59 | 0.00 | 0.00 | 3.55 |
8293 | 9174 | 7.043125 | CCATGTACTTCGATGTATCAAAGACTG | 60.043 | 40.741 | 13.59 | 8.55 | 0.00 | 3.51 |
8294 | 9175 | 6.980978 | CCATGTACTTCGATGTATCAAAGACT | 59.019 | 38.462 | 13.59 | 0.00 | 0.00 | 3.24 |
8295 | 9176 | 6.978659 | TCCATGTACTTCGATGTATCAAAGAC | 59.021 | 38.462 | 13.59 | 3.42 | 0.00 | 3.01 |
8296 | 9177 | 7.107639 | TCCATGTACTTCGATGTATCAAAGA | 57.892 | 36.000 | 13.59 | 10.99 | 0.00 | 2.52 |
8297 | 9178 | 7.953158 | ATCCATGTACTTCGATGTATCAAAG | 57.047 | 36.000 | 13.59 | 10.20 | 0.00 | 2.77 |
8298 | 9179 | 9.825109 | TTAATCCATGTACTTCGATGTATCAAA | 57.175 | 29.630 | 13.59 | 2.53 | 0.00 | 2.69 |
8299 | 9180 | 9.825109 | TTTAATCCATGTACTTCGATGTATCAA | 57.175 | 29.630 | 13.59 | 4.65 | 0.00 | 2.57 |
8300 | 9181 | 9.256477 | GTTTAATCCATGTACTTCGATGTATCA | 57.744 | 33.333 | 13.59 | 12.99 | 0.00 | 2.15 |
8301 | 9182 | 9.256477 | TGTTTAATCCATGTACTTCGATGTATC | 57.744 | 33.333 | 13.59 | 8.62 | 0.00 | 2.24 |
8302 | 9183 | 9.778741 | ATGTTTAATCCATGTACTTCGATGTAT | 57.221 | 29.630 | 13.59 | 0.00 | 0.00 | 2.29 |
8303 | 9184 | 9.040939 | CATGTTTAATCCATGTACTTCGATGTA | 57.959 | 33.333 | 7.05 | 7.05 | 35.94 | 2.29 |
8304 | 9185 | 7.919690 | CATGTTTAATCCATGTACTTCGATGT | 58.080 | 34.615 | 9.12 | 9.12 | 35.94 | 3.06 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.