Multiple sequence alignment - TraesCS2D01G385300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G385300 chr2D 100.000 2889 0 0 1 2889 489697486 489700374 0.000000e+00 5336.0
1 TraesCS2D01G385300 chr2D 91.139 395 11 9 1066 1459 490123948 490124319 5.520000e-142 514.0
2 TraesCS2D01G385300 chr2D 87.013 308 35 4 1662 1965 490124520 490124826 2.760000e-90 342.0
3 TraesCS2D01G385300 chr2B 92.227 1145 56 15 843 1975 573673194 573674317 0.000000e+00 1591.0
4 TraesCS2D01G385300 chr2B 87.173 842 77 11 2045 2881 573674334 573675149 0.000000e+00 928.0
5 TraesCS2D01G385300 chr2B 88.579 359 7 9 1109 1459 574013953 574014285 3.470000e-109 405.0
6 TraesCS2D01G385300 chr2B 83.051 413 47 9 1527 1917 574035243 574035654 1.270000e-93 353.0
7 TraesCS2D01G385300 chr2B 91.928 223 18 0 1695 1917 573940585 573940807 2.160000e-81 313.0
8 TraesCS2D01G385300 chr2B 98.571 70 1 0 1109 1178 574035122 574035191 1.090000e-24 124.0
9 TraesCS2D01G385300 chr2B 92.857 56 3 1 140 195 793382687 793382633 2.390000e-11 80.5
10 TraesCS2D01G385300 chr2A 88.589 964 58 21 1512 2471 633491104 633492019 0.000000e+00 1123.0
11 TraesCS2D01G385300 chr2A 94.385 659 25 10 848 1498 633490124 633490778 0.000000e+00 1002.0
12 TraesCS2D01G385300 chr2A 89.147 387 29 3 2467 2849 633503571 633503948 1.210000e-128 470.0
13 TraesCS2D01G385300 chr2A 77.366 243 26 20 140 367 510074361 510074133 1.820000e-22 117.0
14 TraesCS2D01G385300 chr2A 85.714 98 9 5 143 238 35970865 35970959 6.590000e-17 99.0
15 TraesCS2D01G385300 chr2A 98.214 56 1 0 8 63 448565069 448565014 6.590000e-17 99.0
16 TraesCS2D01G385300 chr6D 78.947 912 156 22 1995 2885 12598168 12597272 3.210000e-164 588.0
17 TraesCS2D01G385300 chr1D 78.947 912 156 19 1995 2885 5215723 5214827 3.210000e-164 588.0
18 TraesCS2D01G385300 chr5B 77.656 913 147 31 1991 2883 593432893 593432018 1.190000e-138 503.0
19 TraesCS2D01G385300 chr5B 96.825 63 2 0 1 63 26601914 26601852 3.940000e-19 106.0
20 TraesCS2D01G385300 chrUn 88.601 386 20 2 1091 1469 259667758 259668126 5.680000e-122 448.0
21 TraesCS2D01G385300 chrUn 82.100 419 43 11 1527 1921 259668157 259668567 2.150000e-86 329.0
22 TraesCS2D01G385300 chr3D 76.834 259 39 16 142 386 2106472 2106723 3.020000e-25 126.0
23 TraesCS2D01G385300 chr3B 76.265 257 43 12 142 386 4308065 4308315 1.410000e-23 121.0
24 TraesCS2D01G385300 chr3B 94.828 58 3 0 6 63 744031042 744031099 1.100000e-14 91.6
25 TraesCS2D01G385300 chr6B 96.825 63 2 0 1 63 87894013 87893951 3.940000e-19 106.0
26 TraesCS2D01G385300 chr7A 100.000 56 0 0 8 63 132622827 132622772 1.420000e-18 104.0
27 TraesCS2D01G385300 chr7B 95.238 63 3 0 1 63 702688311 702688373 1.830000e-17 100.0
28 TraesCS2D01G385300 chr7B 85.915 71 8 2 147 217 715249381 715249313 1.110000e-09 75.0
29 TraesCS2D01G385300 chr7B 89.474 57 5 1 141 197 521145601 521145546 1.440000e-08 71.3
30 TraesCS2D01G385300 chr1A 94.000 50 3 0 148 197 21351766 21351815 3.090000e-10 76.8
31 TraesCS2D01G385300 chr5D 83.544 79 11 2 613 691 50828884 50828960 3.990000e-09 73.1
32 TraesCS2D01G385300 chr4D 89.655 58 4 2 135 192 506882493 506882548 3.990000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G385300 chr2D 489697486 489700374 2888 False 5336.0 5336 100.0000 1 2889 1 chr2D.!!$F1 2888
1 TraesCS2D01G385300 chr2D 490123948 490124826 878 False 428.0 514 89.0760 1066 1965 2 chr2D.!!$F2 899
2 TraesCS2D01G385300 chr2B 573673194 573675149 1955 False 1259.5 1591 89.7000 843 2881 2 chr2B.!!$F3 2038
3 TraesCS2D01G385300 chr2B 574035122 574035654 532 False 238.5 353 90.8110 1109 1917 2 chr2B.!!$F4 808
4 TraesCS2D01G385300 chr2A 633490124 633492019 1895 False 1062.5 1123 91.4870 848 2471 2 chr2A.!!$F3 1623
5 TraesCS2D01G385300 chr6D 12597272 12598168 896 True 588.0 588 78.9470 1995 2885 1 chr6D.!!$R1 890
6 TraesCS2D01G385300 chr1D 5214827 5215723 896 True 588.0 588 78.9470 1995 2885 1 chr1D.!!$R1 890
7 TraesCS2D01G385300 chr5B 593432018 593432893 875 True 503.0 503 77.6560 1991 2883 1 chr5B.!!$R2 892
8 TraesCS2D01G385300 chrUn 259667758 259668567 809 False 388.5 448 85.3505 1091 1921 2 chrUn.!!$F1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 662 0.037326 TTGCGTGCGAGAGATCCTTT 60.037 50.0 0.0 0.0 0.0 3.11 F
662 663 0.037326 TGCGTGCGAGAGATCCTTTT 60.037 50.0 0.0 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1964 0.539051 AGCCAGCATTTCTCGCTACT 59.461 50.0 0.00 0.0 37.49 2.57 R
2570 2976 0.868406 GACTTGCCTGGTCGAACAAG 59.132 55.0 3.93 0.0 43.99 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.926778 TTTGGGATTTTTGGCACTGG 57.073 45.000 0.00 0.00 0.00 4.00
30 31 0.396060 TTGGGATTTTTGGCACTGGC 59.604 50.000 0.00 0.00 40.13 4.85
31 32 0.471591 TGGGATTTTTGGCACTGGCT 60.472 50.000 3.97 0.00 40.87 4.75
32 33 0.247460 GGGATTTTTGGCACTGGCTC 59.753 55.000 3.97 0.00 40.87 4.70
33 34 0.109132 GGATTTTTGGCACTGGCTCG 60.109 55.000 3.97 0.00 40.87 5.03
34 35 0.733909 GATTTTTGGCACTGGCTCGC 60.734 55.000 3.97 0.00 40.87 5.03
35 36 1.181098 ATTTTTGGCACTGGCTCGCT 61.181 50.000 3.97 0.00 40.87 4.93
36 37 2.074230 TTTTTGGCACTGGCTCGCTG 62.074 55.000 3.97 0.00 40.87 5.18
37 38 3.772853 TTTGGCACTGGCTCGCTGT 62.773 57.895 3.97 0.00 40.87 4.40
38 39 2.390306 TTTGGCACTGGCTCGCTGTA 62.390 55.000 3.97 0.00 40.87 2.74
39 40 2.047274 GGCACTGGCTCGCTGTAA 60.047 61.111 0.00 0.00 40.87 2.41
40 41 2.391389 GGCACTGGCTCGCTGTAAC 61.391 63.158 0.00 0.00 40.87 2.50
41 42 2.730672 GCACTGGCTCGCTGTAACG 61.731 63.158 0.00 0.00 36.96 3.18
42 43 2.432628 ACTGGCTCGCTGTAACGC 60.433 61.111 0.00 0.00 0.00 4.84
43 44 3.188786 CTGGCTCGCTGTAACGCC 61.189 66.667 0.00 0.00 42.78 5.68
45 46 2.740826 GGCTCGCTGTAACGCCAA 60.741 61.111 0.00 0.00 42.06 4.52
46 47 2.740714 GGCTCGCTGTAACGCCAAG 61.741 63.158 0.00 0.00 42.06 3.61
47 48 1.736645 GCTCGCTGTAACGCCAAGA 60.737 57.895 0.00 0.00 0.00 3.02
48 49 1.289109 GCTCGCTGTAACGCCAAGAA 61.289 55.000 0.00 0.00 0.00 2.52
49 50 1.144969 CTCGCTGTAACGCCAAGAAA 58.855 50.000 0.00 0.00 0.00 2.52
50 51 0.863144 TCGCTGTAACGCCAAGAAAC 59.137 50.000 0.00 0.00 0.00 2.78
51 52 0.450482 CGCTGTAACGCCAAGAAACG 60.450 55.000 0.00 0.00 0.00 3.60
52 53 0.110373 GCTGTAACGCCAAGAAACGG 60.110 55.000 0.00 0.00 0.00 4.44
53 54 0.515564 CTGTAACGCCAAGAAACGGG 59.484 55.000 0.00 0.00 0.00 5.28
54 55 1.208358 GTAACGCCAAGAAACGGGC 59.792 57.895 0.00 0.00 46.80 6.13
71 72 4.473520 CCGGCCCATGCTCGTCTT 62.474 66.667 0.00 0.00 37.74 3.01
72 73 2.892425 CGGCCCATGCTCGTCTTC 60.892 66.667 0.00 0.00 37.74 2.87
73 74 2.586792 GGCCCATGCTCGTCTTCT 59.413 61.111 0.00 0.00 37.74 2.85
74 75 1.078143 GGCCCATGCTCGTCTTCTT 60.078 57.895 0.00 0.00 37.74 2.52
75 76 1.372087 GGCCCATGCTCGTCTTCTTG 61.372 60.000 0.00 0.00 37.74 3.02
76 77 0.391661 GCCCATGCTCGTCTTCTTGA 60.392 55.000 0.00 0.00 33.53 3.02
77 78 1.363744 CCCATGCTCGTCTTCTTGAC 58.636 55.000 0.00 0.00 42.06 3.18
78 79 1.066573 CCCATGCTCGTCTTCTTGACT 60.067 52.381 0.00 0.00 43.25 3.41
79 80 2.266554 CCATGCTCGTCTTCTTGACTC 58.733 52.381 0.00 0.00 43.25 3.36
80 81 2.353109 CCATGCTCGTCTTCTTGACTCA 60.353 50.000 0.00 0.00 43.25 3.41
81 82 2.423926 TGCTCGTCTTCTTGACTCAC 57.576 50.000 0.00 0.00 43.25 3.51
82 83 1.332178 GCTCGTCTTCTTGACTCACG 58.668 55.000 0.00 0.00 43.25 4.35
83 84 1.332178 CTCGTCTTCTTGACTCACGC 58.668 55.000 0.00 0.00 43.25 5.34
84 85 0.385598 TCGTCTTCTTGACTCACGCG 60.386 55.000 3.53 3.53 43.25 6.01
85 86 0.385598 CGTCTTCTTGACTCACGCGA 60.386 55.000 15.93 0.00 43.25 5.87
86 87 1.332178 GTCTTCTTGACTCACGCGAG 58.668 55.000 15.93 4.59 45.49 5.03
87 88 0.387367 TCTTCTTGACTCACGCGAGC 60.387 55.000 15.93 0.00 43.66 5.03
88 89 1.669158 CTTCTTGACTCACGCGAGCG 61.669 60.000 15.93 16.38 43.66 5.03
115 116 2.525877 GGCTCCCGCACCCCTATA 60.526 66.667 0.00 0.00 38.10 1.31
116 117 1.918800 GGCTCCCGCACCCCTATAT 60.919 63.158 0.00 0.00 38.10 0.86
117 118 1.597461 GCTCCCGCACCCCTATATC 59.403 63.158 0.00 0.00 35.78 1.63
118 119 0.905337 GCTCCCGCACCCCTATATCT 60.905 60.000 0.00 0.00 35.78 1.98
119 120 1.645710 CTCCCGCACCCCTATATCTT 58.354 55.000 0.00 0.00 0.00 2.40
120 121 1.276421 CTCCCGCACCCCTATATCTTG 59.724 57.143 0.00 0.00 0.00 3.02
121 122 0.321653 CCCGCACCCCTATATCTTGC 60.322 60.000 0.00 0.00 0.00 4.01
122 123 0.321653 CCGCACCCCTATATCTTGCC 60.322 60.000 0.00 0.00 0.00 4.52
123 124 0.687354 CGCACCCCTATATCTTGCCT 59.313 55.000 0.00 0.00 0.00 4.75
124 125 1.072331 CGCACCCCTATATCTTGCCTT 59.928 52.381 0.00 0.00 0.00 4.35
125 126 2.784347 GCACCCCTATATCTTGCCTTC 58.216 52.381 0.00 0.00 0.00 3.46
126 127 2.106511 GCACCCCTATATCTTGCCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
127 128 3.808618 GCACCCCTATATCTTGCCTTCAG 60.809 52.174 0.00 0.00 0.00 3.02
128 129 2.373502 ACCCCTATATCTTGCCTTCAGC 59.626 50.000 0.00 0.00 44.14 4.26
139 140 4.489810 CTTGCCTTCAGCGAGTATATAGG 58.510 47.826 0.00 0.00 46.60 2.57
140 141 3.512033 GCCTTCAGCGAGTATATAGGG 57.488 52.381 0.00 0.00 0.00 3.53
141 142 3.090037 GCCTTCAGCGAGTATATAGGGA 58.910 50.000 0.00 0.00 0.00 4.20
142 143 3.510360 GCCTTCAGCGAGTATATAGGGAA 59.490 47.826 0.00 0.00 0.00 3.97
143 144 4.021368 GCCTTCAGCGAGTATATAGGGAAA 60.021 45.833 0.00 0.00 0.00 3.13
144 145 5.510861 GCCTTCAGCGAGTATATAGGGAAAA 60.511 44.000 0.00 0.00 0.00 2.29
145 146 5.927115 CCTTCAGCGAGTATATAGGGAAAAC 59.073 44.000 0.00 0.00 0.00 2.43
146 147 6.462487 CCTTCAGCGAGTATATAGGGAAAACA 60.462 42.308 0.00 0.00 0.00 2.83
147 148 6.665992 TCAGCGAGTATATAGGGAAAACAT 57.334 37.500 0.00 0.00 0.00 2.71
148 149 6.455647 TCAGCGAGTATATAGGGAAAACATG 58.544 40.000 0.00 0.00 0.00 3.21
149 150 6.041637 TCAGCGAGTATATAGGGAAAACATGT 59.958 38.462 0.00 0.00 0.00 3.21
150 151 6.706270 CAGCGAGTATATAGGGAAAACATGTT 59.294 38.462 4.92 4.92 0.00 2.71
151 152 6.706270 AGCGAGTATATAGGGAAAACATGTTG 59.294 38.462 12.82 0.00 0.00 3.33
152 153 6.704493 GCGAGTATATAGGGAAAACATGTTGA 59.296 38.462 12.82 0.00 0.00 3.18
153 154 7.307219 GCGAGTATATAGGGAAAACATGTTGAC 60.307 40.741 12.82 9.12 0.00 3.18
154 155 7.170998 CGAGTATATAGGGAAAACATGTTGACC 59.829 40.741 12.82 17.18 0.00 4.02
155 156 7.867921 AGTATATAGGGAAAACATGTTGACCA 58.132 34.615 25.33 13.33 0.00 4.02
156 157 8.502738 AGTATATAGGGAAAACATGTTGACCAT 58.497 33.333 25.33 22.62 0.00 3.55
157 158 7.823745 ATATAGGGAAAACATGTTGACCATC 57.176 36.000 25.33 14.83 0.00 3.51
158 159 4.118168 AGGGAAAACATGTTGACCATCT 57.882 40.909 25.33 16.24 0.00 2.90
159 160 5.255397 AGGGAAAACATGTTGACCATCTA 57.745 39.130 25.33 0.00 0.00 1.98
160 161 5.831103 AGGGAAAACATGTTGACCATCTAT 58.169 37.500 25.33 10.60 0.00 1.98
161 162 6.256053 AGGGAAAACATGTTGACCATCTATT 58.744 36.000 25.33 10.25 0.00 1.73
162 163 6.378280 AGGGAAAACATGTTGACCATCTATTC 59.622 38.462 25.33 16.39 0.00 1.75
163 164 6.152661 GGGAAAACATGTTGACCATCTATTCA 59.847 38.462 25.33 0.00 0.00 2.57
164 165 7.309744 GGGAAAACATGTTGACCATCTATTCAA 60.310 37.037 25.33 0.00 0.00 2.69
165 166 8.087750 GGAAAACATGTTGACCATCTATTCAAA 58.912 33.333 21.71 0.00 33.58 2.69
166 167 9.474920 GAAAACATGTTGACCATCTATTCAAAA 57.525 29.630 12.82 0.00 33.58 2.44
167 168 9.829507 AAAACATGTTGACCATCTATTCAAAAA 57.170 25.926 12.82 0.00 33.58 1.94
249 250 9.995003 TGGATTAGAAAATGTTTAATTTGCACT 57.005 25.926 0.00 0.00 0.00 4.40
328 329 9.990360 AACCGAAAGAACAAATAAAACCATAAT 57.010 25.926 0.00 0.00 0.00 1.28
450 451 9.516314 AAGAGAAAAACGAAAACTAAAATCCTG 57.484 29.630 0.00 0.00 0.00 3.86
451 452 8.135529 AGAGAAAAACGAAAACTAAAATCCTGG 58.864 33.333 0.00 0.00 0.00 4.45
452 453 8.002984 AGAAAAACGAAAACTAAAATCCTGGA 57.997 30.769 0.00 0.00 0.00 3.86
453 454 8.471609 AGAAAAACGAAAACTAAAATCCTGGAA 58.528 29.630 0.00 0.00 0.00 3.53
454 455 9.089601 GAAAAACGAAAACTAAAATCCTGGAAA 57.910 29.630 0.00 0.00 0.00 3.13
455 456 9.438228 AAAAACGAAAACTAAAATCCTGGAAAA 57.562 25.926 0.00 0.00 0.00 2.29
456 457 7.997107 AACGAAAACTAAAATCCTGGAAAAC 57.003 32.000 0.00 0.00 0.00 2.43
457 458 6.509656 ACGAAAACTAAAATCCTGGAAAACC 58.490 36.000 0.00 0.00 0.00 3.27
458 459 6.097129 ACGAAAACTAAAATCCTGGAAAACCA 59.903 34.615 0.00 0.00 0.00 3.67
459 460 6.640907 CGAAAACTAAAATCCTGGAAAACCAG 59.359 38.462 0.00 9.05 37.54 4.00
460 461 7.432148 AAAACTAAAATCCTGGAAAACCAGT 57.568 32.000 13.97 0.00 36.18 4.00
461 462 6.405278 AACTAAAATCCTGGAAAACCAGTG 57.595 37.500 13.97 6.89 36.18 3.66
462 463 5.701224 ACTAAAATCCTGGAAAACCAGTGA 58.299 37.500 13.97 11.16 36.18 3.41
463 464 6.314917 ACTAAAATCCTGGAAAACCAGTGAT 58.685 36.000 13.97 12.58 36.18 3.06
464 465 7.466804 ACTAAAATCCTGGAAAACCAGTGATA 58.533 34.615 13.97 3.42 36.18 2.15
465 466 7.947890 ACTAAAATCCTGGAAAACCAGTGATAA 59.052 33.333 13.97 6.44 36.18 1.75
466 467 7.610580 AAAATCCTGGAAAACCAGTGATAAA 57.389 32.000 13.97 0.00 36.18 1.40
467 468 7.797121 AAATCCTGGAAAACCAGTGATAAAT 57.203 32.000 13.97 5.65 36.18 1.40
468 469 7.410120 AATCCTGGAAAACCAGTGATAAATC 57.590 36.000 13.97 0.00 36.18 2.17
469 470 4.941263 TCCTGGAAAACCAGTGATAAATCG 59.059 41.667 13.97 0.00 36.18 3.34
470 471 4.096382 CCTGGAAAACCAGTGATAAATCGG 59.904 45.833 13.97 0.00 36.18 4.18
471 472 3.442273 TGGAAAACCAGTGATAAATCGGC 59.558 43.478 0.00 0.00 0.00 5.54
472 473 3.694566 GGAAAACCAGTGATAAATCGGCT 59.305 43.478 0.00 0.00 0.00 5.52
473 474 4.157840 GGAAAACCAGTGATAAATCGGCTT 59.842 41.667 0.00 0.00 0.00 4.35
474 475 5.355910 GGAAAACCAGTGATAAATCGGCTTA 59.644 40.000 0.00 0.00 0.00 3.09
475 476 6.039382 GGAAAACCAGTGATAAATCGGCTTAT 59.961 38.462 0.00 0.00 0.00 1.73
476 477 7.404671 AAAACCAGTGATAAATCGGCTTATT 57.595 32.000 0.00 0.00 0.00 1.40
477 478 6.377327 AACCAGTGATAAATCGGCTTATTG 57.623 37.500 0.00 0.00 0.00 1.90
478 479 4.275936 ACCAGTGATAAATCGGCTTATTGC 59.724 41.667 0.00 0.00 41.94 3.56
479 480 4.457810 CAGTGATAAATCGGCTTATTGCG 58.542 43.478 0.00 0.00 44.05 4.85
480 481 4.024893 CAGTGATAAATCGGCTTATTGCGT 60.025 41.667 0.00 0.00 44.05 5.24
481 482 4.211374 AGTGATAAATCGGCTTATTGCGTC 59.789 41.667 0.00 0.00 44.05 5.19
482 483 4.211374 GTGATAAATCGGCTTATTGCGTCT 59.789 41.667 0.00 0.00 44.05 4.18
483 484 4.447724 TGATAAATCGGCTTATTGCGTCTC 59.552 41.667 0.00 0.00 44.05 3.36
484 485 2.309528 AATCGGCTTATTGCGTCTCA 57.690 45.000 0.00 0.00 44.05 3.27
485 486 2.309528 ATCGGCTTATTGCGTCTCAA 57.690 45.000 0.00 0.00 44.05 3.02
486 487 1.640428 TCGGCTTATTGCGTCTCAAG 58.360 50.000 0.00 0.00 44.05 3.02
487 488 1.067142 TCGGCTTATTGCGTCTCAAGT 60.067 47.619 0.00 0.00 44.05 3.16
488 489 2.164827 TCGGCTTATTGCGTCTCAAGTA 59.835 45.455 0.00 0.00 44.05 2.24
489 490 2.535984 CGGCTTATTGCGTCTCAAGTAG 59.464 50.000 0.00 0.00 44.05 2.57
490 491 3.733988 CGGCTTATTGCGTCTCAAGTAGA 60.734 47.826 0.00 0.00 44.05 2.59
491 492 4.372656 GGCTTATTGCGTCTCAAGTAGAT 58.627 43.478 0.00 0.00 44.05 1.98
492 493 4.446051 GGCTTATTGCGTCTCAAGTAGATC 59.554 45.833 0.00 0.00 44.05 2.75
493 494 4.147306 GCTTATTGCGTCTCAAGTAGATCG 59.853 45.833 0.00 0.00 38.22 3.69
494 495 1.909376 TTGCGTCTCAAGTAGATCGC 58.091 50.000 12.05 12.05 46.13 4.58
495 496 1.095600 TGCGTCTCAAGTAGATCGCT 58.904 50.000 16.72 0.00 46.12 4.93
496 497 1.064208 TGCGTCTCAAGTAGATCGCTC 59.936 52.381 16.72 0.00 46.12 5.03
497 498 1.598430 GCGTCTCAAGTAGATCGCTCC 60.598 57.143 11.82 0.00 44.34 4.70
498 499 1.002251 CGTCTCAAGTAGATCGCTCCC 60.002 57.143 0.00 0.00 36.36 4.30
499 500 2.303175 GTCTCAAGTAGATCGCTCCCT 58.697 52.381 0.00 0.00 36.36 4.20
500 501 2.691011 GTCTCAAGTAGATCGCTCCCTT 59.309 50.000 0.00 0.00 36.36 3.95
501 502 2.690497 TCTCAAGTAGATCGCTCCCTTG 59.310 50.000 9.01 9.01 35.85 3.61
502 503 2.428890 CTCAAGTAGATCGCTCCCTTGT 59.571 50.000 12.99 0.00 35.92 3.16
503 504 3.628008 TCAAGTAGATCGCTCCCTTGTA 58.372 45.455 12.99 2.42 35.92 2.41
504 505 3.380637 TCAAGTAGATCGCTCCCTTGTAC 59.619 47.826 12.99 0.00 35.92 2.90
505 506 3.300239 AGTAGATCGCTCCCTTGTACT 57.700 47.619 0.00 0.00 0.00 2.73
506 507 4.434545 AGTAGATCGCTCCCTTGTACTA 57.565 45.455 0.00 0.00 0.00 1.82
507 508 4.391155 AGTAGATCGCTCCCTTGTACTAG 58.609 47.826 0.00 0.00 0.00 2.57
508 509 3.579534 AGATCGCTCCCTTGTACTAGA 57.420 47.619 5.85 0.00 0.00 2.43
509 510 3.899726 AGATCGCTCCCTTGTACTAGAA 58.100 45.455 5.85 0.00 0.00 2.10
510 511 3.633065 AGATCGCTCCCTTGTACTAGAAC 59.367 47.826 5.85 0.00 0.00 3.01
511 512 3.083122 TCGCTCCCTTGTACTAGAACT 57.917 47.619 5.85 0.00 0.00 3.01
512 513 3.428532 TCGCTCCCTTGTACTAGAACTT 58.571 45.455 5.85 0.00 0.00 2.66
513 514 3.192844 TCGCTCCCTTGTACTAGAACTTG 59.807 47.826 5.85 0.00 0.00 3.16
514 515 3.192844 CGCTCCCTTGTACTAGAACTTGA 59.807 47.826 5.85 0.00 0.00 3.02
515 516 4.496360 GCTCCCTTGTACTAGAACTTGAC 58.504 47.826 5.85 0.00 0.00 3.18
516 517 4.621038 GCTCCCTTGTACTAGAACTTGACC 60.621 50.000 5.85 0.00 0.00 4.02
517 518 3.836562 TCCCTTGTACTAGAACTTGACCC 59.163 47.826 5.85 0.00 0.00 4.46
518 519 3.055312 CCCTTGTACTAGAACTTGACCCC 60.055 52.174 5.85 0.00 0.00 4.95
519 520 3.581332 CCTTGTACTAGAACTTGACCCCA 59.419 47.826 5.85 0.00 0.00 4.96
520 521 4.322801 CCTTGTACTAGAACTTGACCCCAG 60.323 50.000 5.85 0.00 0.00 4.45
521 522 2.565834 TGTACTAGAACTTGACCCCAGC 59.434 50.000 0.00 0.00 0.00 4.85
522 523 0.984995 ACTAGAACTTGACCCCAGCC 59.015 55.000 0.00 0.00 0.00 4.85
523 524 1.280457 CTAGAACTTGACCCCAGCCT 58.720 55.000 0.00 0.00 0.00 4.58
524 525 2.225547 ACTAGAACTTGACCCCAGCCTA 60.226 50.000 0.00 0.00 0.00 3.93
525 526 1.280457 AGAACTTGACCCCAGCCTAG 58.720 55.000 0.00 0.00 0.00 3.02
526 527 0.984995 GAACTTGACCCCAGCCTAGT 59.015 55.000 0.00 0.00 0.00 2.57
527 528 0.693049 AACTTGACCCCAGCCTAGTG 59.307 55.000 0.00 0.00 0.00 2.74
528 529 1.201429 ACTTGACCCCAGCCTAGTGG 61.201 60.000 0.00 0.00 37.34 4.00
549 550 5.152923 GGCTAACAACGCCTTCTATTAAC 57.847 43.478 0.00 0.00 44.17 2.01
550 551 4.034858 GGCTAACAACGCCTTCTATTAACC 59.965 45.833 0.00 0.00 44.17 2.85
551 552 4.632688 GCTAACAACGCCTTCTATTAACCA 59.367 41.667 0.00 0.00 0.00 3.67
552 553 5.220605 GCTAACAACGCCTTCTATTAACCAG 60.221 44.000 0.00 0.00 0.00 4.00
553 554 3.007635 ACAACGCCTTCTATTAACCAGC 58.992 45.455 0.00 0.00 0.00 4.85
554 555 3.006940 CAACGCCTTCTATTAACCAGCA 58.993 45.455 0.00 0.00 0.00 4.41
555 556 2.906354 ACGCCTTCTATTAACCAGCAG 58.094 47.619 0.00 0.00 0.00 4.24
556 557 2.500098 ACGCCTTCTATTAACCAGCAGA 59.500 45.455 0.00 0.00 0.00 4.26
557 558 2.866762 CGCCTTCTATTAACCAGCAGAC 59.133 50.000 0.00 0.00 0.00 3.51
558 559 3.206964 GCCTTCTATTAACCAGCAGACC 58.793 50.000 0.00 0.00 0.00 3.85
559 560 3.809905 CCTTCTATTAACCAGCAGACCC 58.190 50.000 0.00 0.00 0.00 4.46
560 561 3.458189 CTTCTATTAACCAGCAGACCCG 58.542 50.000 0.00 0.00 0.00 5.28
561 562 2.742348 TCTATTAACCAGCAGACCCGA 58.258 47.619 0.00 0.00 0.00 5.14
562 563 2.693591 TCTATTAACCAGCAGACCCGAG 59.306 50.000 0.00 0.00 0.00 4.63
563 564 1.568504 ATTAACCAGCAGACCCGAGA 58.431 50.000 0.00 0.00 0.00 4.04
564 565 1.568504 TTAACCAGCAGACCCGAGAT 58.431 50.000 0.00 0.00 0.00 2.75
565 566 1.112113 TAACCAGCAGACCCGAGATC 58.888 55.000 0.00 0.00 0.00 2.75
566 567 0.904865 AACCAGCAGACCCGAGATCA 60.905 55.000 0.00 0.00 0.00 2.92
567 568 0.904865 ACCAGCAGACCCGAGATCAA 60.905 55.000 0.00 0.00 0.00 2.57
568 569 0.250234 CCAGCAGACCCGAGATCAAA 59.750 55.000 0.00 0.00 0.00 2.69
569 570 1.363744 CAGCAGACCCGAGATCAAAC 58.636 55.000 0.00 0.00 0.00 2.93
570 571 0.250513 AGCAGACCCGAGATCAAACC 59.749 55.000 0.00 0.00 0.00 3.27
571 572 0.744771 GCAGACCCGAGATCAAACCC 60.745 60.000 0.00 0.00 0.00 4.11
572 573 0.107654 CAGACCCGAGATCAAACCCC 60.108 60.000 0.00 0.00 0.00 4.95
573 574 1.223763 GACCCGAGATCAAACCCCC 59.776 63.158 0.00 0.00 0.00 5.40
574 575 1.540367 ACCCGAGATCAAACCCCCA 60.540 57.895 0.00 0.00 0.00 4.96
575 576 1.077716 CCCGAGATCAAACCCCCAC 60.078 63.158 0.00 0.00 0.00 4.61
576 577 1.682849 CCGAGATCAAACCCCCACA 59.317 57.895 0.00 0.00 0.00 4.17
577 578 0.255890 CCGAGATCAAACCCCCACAT 59.744 55.000 0.00 0.00 0.00 3.21
578 579 1.382522 CGAGATCAAACCCCCACATG 58.617 55.000 0.00 0.00 0.00 3.21
579 580 1.106285 GAGATCAAACCCCCACATGC 58.894 55.000 0.00 0.00 0.00 4.06
580 581 0.680921 AGATCAAACCCCCACATGCG 60.681 55.000 0.00 0.00 0.00 4.73
581 582 2.283472 GATCAAACCCCCACATGCGC 62.283 60.000 0.00 0.00 0.00 6.09
582 583 4.418401 CAAACCCCCACATGCGCG 62.418 66.667 0.00 0.00 0.00 6.86
588 589 3.434319 CCCACATGCGCGCTCTTT 61.434 61.111 33.29 11.65 0.00 2.52
589 590 2.562912 CCACATGCGCGCTCTTTT 59.437 55.556 33.29 9.09 0.00 2.27
590 591 1.081242 CCACATGCGCGCTCTTTTT 60.081 52.632 33.29 7.53 0.00 1.94
611 612 6.963083 TTTTTCTATTTCTTTCCAACGGGA 57.037 33.333 0.00 0.00 43.03 5.14
612 613 6.569179 TTTTCTATTTCTTTCCAACGGGAG 57.431 37.500 0.00 0.00 46.01 4.30
613 614 3.606687 TCTATTTCTTTCCAACGGGAGC 58.393 45.455 0.00 0.00 46.01 4.70
614 615 2.586648 ATTTCTTTCCAACGGGAGCT 57.413 45.000 0.00 0.00 46.01 4.09
615 616 3.713826 ATTTCTTTCCAACGGGAGCTA 57.286 42.857 0.00 0.00 46.01 3.32
616 617 3.495434 TTTCTTTCCAACGGGAGCTAA 57.505 42.857 0.00 0.00 46.01 3.09
617 618 3.713826 TTCTTTCCAACGGGAGCTAAT 57.286 42.857 0.00 0.00 46.01 1.73
618 619 2.985896 TCTTTCCAACGGGAGCTAATG 58.014 47.619 0.00 0.00 46.01 1.90
619 620 2.017049 CTTTCCAACGGGAGCTAATGG 58.983 52.381 0.00 0.00 46.01 3.16
620 621 0.254747 TTCCAACGGGAGCTAATGGG 59.745 55.000 0.00 0.00 46.01 4.00
621 622 1.823899 CCAACGGGAGCTAATGGGC 60.824 63.158 0.00 0.00 35.59 5.36
622 623 1.224592 CAACGGGAGCTAATGGGCT 59.775 57.895 0.00 0.00 46.11 5.19
623 624 1.097547 CAACGGGAGCTAATGGGCTG 61.098 60.000 0.00 0.00 43.20 4.85
624 625 1.271840 AACGGGAGCTAATGGGCTGA 61.272 55.000 0.00 0.00 43.20 4.26
625 626 1.227674 CGGGAGCTAATGGGCTGAC 60.228 63.158 0.00 0.00 43.20 3.51
626 627 1.915228 GGGAGCTAATGGGCTGACA 59.085 57.895 0.00 0.00 43.20 3.58
627 628 0.464554 GGGAGCTAATGGGCTGACAC 60.465 60.000 0.00 0.00 43.20 3.67
628 629 0.811616 GGAGCTAATGGGCTGACACG 60.812 60.000 0.00 0.00 43.20 4.49
629 630 0.108138 GAGCTAATGGGCTGACACGT 60.108 55.000 0.00 0.00 43.20 4.49
630 631 0.324943 AGCTAATGGGCTGACACGTT 59.675 50.000 0.00 0.00 41.43 3.99
631 632 1.553248 AGCTAATGGGCTGACACGTTA 59.447 47.619 0.00 0.00 41.43 3.18
632 633 1.664151 GCTAATGGGCTGACACGTTAC 59.336 52.381 0.00 0.00 0.00 2.50
633 634 2.677037 GCTAATGGGCTGACACGTTACT 60.677 50.000 0.00 0.00 0.00 2.24
634 635 2.094762 AATGGGCTGACACGTTACTC 57.905 50.000 0.00 0.00 0.00 2.59
635 636 1.267121 ATGGGCTGACACGTTACTCT 58.733 50.000 0.00 0.00 0.00 3.24
636 637 1.913778 TGGGCTGACACGTTACTCTA 58.086 50.000 0.00 0.00 0.00 2.43
637 638 1.542915 TGGGCTGACACGTTACTCTAC 59.457 52.381 0.00 0.00 0.00 2.59
638 639 1.542915 GGGCTGACACGTTACTCTACA 59.457 52.381 0.00 0.00 0.00 2.74
639 640 2.593257 GGCTGACACGTTACTCTACAC 58.407 52.381 0.00 0.00 0.00 2.90
640 641 2.228343 GGCTGACACGTTACTCTACACT 59.772 50.000 0.00 0.00 0.00 3.55
641 642 3.490399 GCTGACACGTTACTCTACACTC 58.510 50.000 0.00 0.00 0.00 3.51
642 643 3.188873 GCTGACACGTTACTCTACACTCT 59.811 47.826 0.00 0.00 0.00 3.24
643 644 4.320348 GCTGACACGTTACTCTACACTCTT 60.320 45.833 0.00 0.00 0.00 2.85
644 645 5.104562 TGACACGTTACTCTACACTCTTG 57.895 43.478 0.00 0.00 0.00 3.02
645 646 3.898529 ACACGTTACTCTACACTCTTGC 58.101 45.455 0.00 0.00 0.00 4.01
646 647 2.909244 CACGTTACTCTACACTCTTGCG 59.091 50.000 0.00 0.00 0.00 4.85
647 648 2.551459 ACGTTACTCTACACTCTTGCGT 59.449 45.455 0.00 0.00 0.00 5.24
648 649 2.909244 CGTTACTCTACACTCTTGCGTG 59.091 50.000 0.00 0.00 40.67 5.34
649 650 2.631418 TACTCTACACTCTTGCGTGC 57.369 50.000 0.00 0.00 38.45 5.34
650 651 0.387367 ACTCTACACTCTTGCGTGCG 60.387 55.000 0.00 0.00 38.45 5.34
651 652 0.109735 CTCTACACTCTTGCGTGCGA 60.110 55.000 0.00 0.00 38.45 5.10
652 653 0.109735 TCTACACTCTTGCGTGCGAG 60.110 55.000 2.53 2.53 38.45 5.03
653 654 0.109735 CTACACTCTTGCGTGCGAGA 60.110 55.000 11.18 11.18 38.45 4.04
657 658 4.794164 TCTTGCGTGCGAGAGATC 57.206 55.556 7.71 0.00 32.98 2.75
658 659 1.139734 TCTTGCGTGCGAGAGATCC 59.860 57.895 7.71 0.00 32.98 3.36
659 660 1.140589 CTTGCGTGCGAGAGATCCT 59.859 57.895 2.82 0.00 0.00 3.24
660 661 0.459237 CTTGCGTGCGAGAGATCCTT 60.459 55.000 2.82 0.00 0.00 3.36
661 662 0.037326 TTGCGTGCGAGAGATCCTTT 60.037 50.000 0.00 0.00 0.00 3.11
662 663 0.037326 TGCGTGCGAGAGATCCTTTT 60.037 50.000 0.00 0.00 0.00 2.27
663 664 1.203758 TGCGTGCGAGAGATCCTTTTA 59.796 47.619 0.00 0.00 0.00 1.52
664 665 2.159099 TGCGTGCGAGAGATCCTTTTAT 60.159 45.455 0.00 0.00 0.00 1.40
665 666 2.473235 GCGTGCGAGAGATCCTTTTATC 59.527 50.000 0.00 0.00 0.00 1.75
666 667 3.797184 GCGTGCGAGAGATCCTTTTATCT 60.797 47.826 0.00 0.00 38.95 1.98
676 677 6.793492 AGATCCTTTTATCTCGCTTAATGC 57.207 37.500 0.00 0.00 30.09 3.56
689 690 4.513000 GCTTAATGCGAGATATAGCTGC 57.487 45.455 0.00 0.23 0.00 5.25
690 691 3.308323 GCTTAATGCGAGATATAGCTGCC 59.692 47.826 0.00 0.00 0.00 4.85
691 692 2.001812 AATGCGAGATATAGCTGCCG 57.998 50.000 0.00 0.00 0.00 5.69
692 693 0.459237 ATGCGAGATATAGCTGCCGC 60.459 55.000 14.95 14.95 42.52 6.53
693 694 2.155194 GCGAGATATAGCTGCCGCG 61.155 63.158 8.11 0.00 42.32 6.46
694 695 1.515088 CGAGATATAGCTGCCGCGG 60.515 63.158 24.05 24.05 42.32 6.46
695 696 1.153745 GAGATATAGCTGCCGCGGG 60.154 63.158 29.38 12.76 42.32 6.13
715 716 2.990941 GCAATTAGCATCCATGACACG 58.009 47.619 0.00 0.00 44.79 4.49
716 717 2.613595 GCAATTAGCATCCATGACACGA 59.386 45.455 0.00 0.00 44.79 4.35
717 718 3.251729 GCAATTAGCATCCATGACACGAT 59.748 43.478 0.00 0.00 44.79 3.73
718 719 4.452114 GCAATTAGCATCCATGACACGATA 59.548 41.667 0.00 0.00 44.79 2.92
719 720 5.049474 GCAATTAGCATCCATGACACGATAA 60.049 40.000 0.00 0.00 44.79 1.75
720 721 6.365839 CAATTAGCATCCATGACACGATAAC 58.634 40.000 0.00 0.00 0.00 1.89
721 722 2.473816 AGCATCCATGACACGATAACG 58.526 47.619 0.00 0.00 45.75 3.18
722 723 1.070577 GCATCCATGACACGATAACGC 60.071 52.381 0.00 0.00 43.96 4.84
723 724 1.190103 CATCCATGACACGATAACGCG 59.810 52.381 3.53 3.53 43.96 6.01
724 725 0.171679 TCCATGACACGATAACGCGT 59.828 50.000 5.58 5.58 46.88 6.01
731 732 3.654178 ACGATAACGCGTGCCTAAT 57.346 47.368 14.98 0.00 43.79 1.73
732 733 1.205657 ACGATAACGCGTGCCTAATG 58.794 50.000 14.98 1.67 43.79 1.90
733 734 0.506932 CGATAACGCGTGCCTAATGG 59.493 55.000 14.98 0.00 0.00 3.16
734 735 0.865769 GATAACGCGTGCCTAATGGG 59.134 55.000 14.98 0.00 38.36 4.00
752 753 9.561069 CCTAATGGGCATCCTACAAATATATAC 57.439 37.037 0.00 0.00 0.00 1.47
754 755 8.807948 AATGGGCATCCTACAAATATATACAC 57.192 34.615 0.00 0.00 0.00 2.90
755 756 6.403049 TGGGCATCCTACAAATATATACACG 58.597 40.000 0.00 0.00 0.00 4.49
756 757 6.211785 TGGGCATCCTACAAATATATACACGA 59.788 38.462 0.00 0.00 0.00 4.35
757 758 6.534079 GGGCATCCTACAAATATATACACGAC 59.466 42.308 0.00 0.00 0.00 4.34
758 759 7.321153 GGCATCCTACAAATATATACACGACT 58.679 38.462 0.00 0.00 0.00 4.18
759 760 7.488471 GGCATCCTACAAATATATACACGACTC 59.512 40.741 0.00 0.00 0.00 3.36
760 761 8.027189 GCATCCTACAAATATATACACGACTCA 58.973 37.037 0.00 0.00 0.00 3.41
761 762 9.908152 CATCCTACAAATATATACACGACTCAA 57.092 33.333 0.00 0.00 0.00 3.02
774 775 6.165659 ACACGACTCAATATGTTTGTAAGC 57.834 37.500 0.00 0.00 0.00 3.09
775 776 5.121768 ACACGACTCAATATGTTTGTAAGCC 59.878 40.000 0.00 0.00 0.00 4.35
776 777 4.634443 ACGACTCAATATGTTTGTAAGCCC 59.366 41.667 0.00 0.00 0.00 5.19
777 778 4.035208 CGACTCAATATGTTTGTAAGCCCC 59.965 45.833 0.00 0.00 0.00 5.80
778 779 3.945285 ACTCAATATGTTTGTAAGCCCCG 59.055 43.478 0.00 0.00 0.00 5.73
779 780 4.196193 CTCAATATGTTTGTAAGCCCCGA 58.804 43.478 0.00 0.00 0.00 5.14
780 781 4.590918 TCAATATGTTTGTAAGCCCCGAA 58.409 39.130 0.00 0.00 0.00 4.30
781 782 4.638421 TCAATATGTTTGTAAGCCCCGAAG 59.362 41.667 0.00 0.00 0.00 3.79
793 794 2.812178 CCGAAGGCCCAACGTACG 60.812 66.667 15.01 15.01 46.14 3.67
794 795 2.259204 CGAAGGCCCAACGTACGA 59.741 61.111 24.41 0.00 0.00 3.43
795 796 2.090524 CGAAGGCCCAACGTACGAC 61.091 63.158 24.41 5.41 0.00 4.34
796 797 1.739196 GAAGGCCCAACGTACGACC 60.739 63.158 24.41 14.16 0.00 4.79
797 798 3.244281 AAGGCCCAACGTACGACCC 62.244 63.158 24.41 13.36 0.00 4.46
799 800 4.362476 GCCCAACGTACGACCCGT 62.362 66.667 24.41 0.00 44.35 5.28
803 804 4.633980 AACGTACGACCCGTTGTC 57.366 55.556 24.41 0.00 45.89 3.18
804 805 1.007387 AACGTACGACCCGTTGTCC 60.007 57.895 24.41 0.00 45.89 4.02
805 806 1.455383 AACGTACGACCCGTTGTCCT 61.455 55.000 24.41 0.00 45.89 3.85
806 807 0.605319 ACGTACGACCCGTTGTCCTA 60.605 55.000 24.41 0.00 41.18 2.94
807 808 0.097674 CGTACGACCCGTTGTCCTAG 59.902 60.000 10.44 0.00 41.18 3.02
808 809 0.179153 GTACGACCCGTTGTCCTAGC 60.179 60.000 0.00 0.00 41.18 3.42
809 810 1.315257 TACGACCCGTTGTCCTAGCC 61.315 60.000 0.00 0.00 41.18 3.93
810 811 2.582978 GACCCGTTGTCCTAGCCC 59.417 66.667 0.00 0.00 38.09 5.19
811 812 2.203877 ACCCGTTGTCCTAGCCCA 60.204 61.111 0.00 0.00 0.00 5.36
812 813 1.833787 GACCCGTTGTCCTAGCCCAA 61.834 60.000 0.00 0.00 38.09 4.12
813 814 1.377229 CCCGTTGTCCTAGCCCAAA 59.623 57.895 0.00 0.00 0.00 3.28
814 815 0.676782 CCCGTTGTCCTAGCCCAAAG 60.677 60.000 0.00 0.00 0.00 2.77
815 816 0.676782 CCGTTGTCCTAGCCCAAAGG 60.677 60.000 9.13 9.13 34.67 3.11
827 828 2.879103 CCCAAAGGCAGTCCTAGAAA 57.121 50.000 0.00 0.00 43.40 2.52
828 829 2.716217 CCCAAAGGCAGTCCTAGAAAG 58.284 52.381 0.00 0.00 43.40 2.62
829 830 2.087646 CCAAAGGCAGTCCTAGAAAGC 58.912 52.381 0.00 0.00 43.40 3.51
830 831 2.553028 CCAAAGGCAGTCCTAGAAAGCA 60.553 50.000 0.00 0.00 43.40 3.91
831 832 3.149196 CAAAGGCAGTCCTAGAAAGCAA 58.851 45.455 0.00 0.00 43.40 3.91
832 833 3.728385 AAGGCAGTCCTAGAAAGCAAT 57.272 42.857 0.00 0.00 43.40 3.56
833 834 3.728385 AGGCAGTCCTAGAAAGCAATT 57.272 42.857 0.00 0.00 42.06 2.32
834 835 3.615155 AGGCAGTCCTAGAAAGCAATTC 58.385 45.455 0.00 0.00 42.06 2.17
835 836 2.352960 GGCAGTCCTAGAAAGCAATTCG 59.647 50.000 0.00 0.00 43.15 3.34
836 837 2.223135 GCAGTCCTAGAAAGCAATTCGC 60.223 50.000 0.00 0.00 43.15 4.70
845 846 3.577313 GCAATTCGCTCCTCGGCC 61.577 66.667 0.00 0.00 39.05 6.13
867 868 4.976619 GCGAGTGGCGAAAATAGC 57.023 55.556 0.00 0.00 44.57 2.97
882 883 3.577805 AATAGCCCCTTATCCACACAC 57.422 47.619 0.00 0.00 0.00 3.82
883 884 1.959710 TAGCCCCTTATCCACACACA 58.040 50.000 0.00 0.00 0.00 3.72
884 885 1.072266 AGCCCCTTATCCACACACAA 58.928 50.000 0.00 0.00 0.00 3.33
885 886 1.004745 AGCCCCTTATCCACACACAAG 59.995 52.381 0.00 0.00 0.00 3.16
886 887 1.463674 CCCCTTATCCACACACAAGC 58.536 55.000 0.00 0.00 0.00 4.01
887 888 1.086696 CCCTTATCCACACACAAGCG 58.913 55.000 0.00 0.00 0.00 4.68
888 889 0.447801 CCTTATCCACACACAAGCGC 59.552 55.000 0.00 0.00 0.00 5.92
889 890 0.095245 CTTATCCACACACAAGCGCG 59.905 55.000 0.00 0.00 0.00 6.86
890 891 0.319986 TTATCCACACACAAGCGCGA 60.320 50.000 12.10 0.00 0.00 5.87
891 892 1.011968 TATCCACACACAAGCGCGAC 61.012 55.000 12.10 0.04 0.00 5.19
892 893 4.354212 CCACACACAAGCGCGACG 62.354 66.667 12.10 0.00 0.00 5.12
894 895 4.884257 ACACACAAGCGCGACGGT 62.884 61.111 12.10 0.00 40.00 4.83
980 986 2.401766 CGCTACCCAGCCAAGCAAG 61.402 63.158 0.00 0.00 45.64 4.01
985 991 0.396974 ACCCAGCCAAGCAAGAAACA 60.397 50.000 0.00 0.00 0.00 2.83
989 995 2.224606 CAGCCAAGCAAGAAACAGAGA 58.775 47.619 0.00 0.00 0.00 3.10
1469 1489 1.061711 CGTCGACCACTACGAGGTAAG 59.938 57.143 10.58 0.00 41.55 2.34
1542 1881 2.701587 CCACGTGGCAGAACTGAAA 58.298 52.632 24.02 0.00 0.00 2.69
1575 1919 8.429493 TGTTCATCTGATTCTGCTACATTTAG 57.571 34.615 0.00 0.00 0.00 1.85
1601 1945 8.650714 GCAAAAATTTAGAAACCAGCTTCATAG 58.349 33.333 0.00 0.00 0.00 2.23
1620 1964 8.414629 TTCATAGAGCAGAATTCTCTAGCATA 57.585 34.615 16.12 9.97 43.89 3.14
1663 2033 0.462375 ATAGTCATGCCGCGTTGGTA 59.538 50.000 4.92 0.00 41.21 3.25
1672 2042 1.287815 CGCGTTGGTAGGAGTGTCA 59.712 57.895 0.00 0.00 0.00 3.58
1873 2243 3.057104 TCAAATTCAACAGCAGCCAGATG 60.057 43.478 0.00 0.00 40.19 2.90
2099 2484 6.017934 GTGTTCTTTCAAGAATGCTCTGTACA 60.018 38.462 5.30 0.00 45.83 2.90
2113 2498 4.201910 GCTCTGTACAACAACTTCTTTGCA 60.202 41.667 0.00 0.00 39.01 4.08
2118 2504 6.033341 TGTACAACAACTTCTTTGCAACATC 58.967 36.000 0.00 0.00 39.01 3.06
2119 2505 5.329035 ACAACAACTTCTTTGCAACATCT 57.671 34.783 0.00 0.00 39.01 2.90
2120 2506 5.723295 ACAACAACTTCTTTGCAACATCTT 58.277 33.333 0.00 0.00 39.01 2.40
2121 2507 6.165577 ACAACAACTTCTTTGCAACATCTTT 58.834 32.000 0.00 0.00 39.01 2.52
2122 2508 6.091169 ACAACAACTTCTTTGCAACATCTTTG 59.909 34.615 0.00 3.20 39.01 2.77
2123 2509 4.567959 ACAACTTCTTTGCAACATCTTTGC 59.432 37.500 0.00 1.95 45.11 3.68
2124 2510 4.660789 ACTTCTTTGCAACATCTTTGCT 57.339 36.364 0.00 0.00 45.13 3.91
2125 2511 5.772825 ACTTCTTTGCAACATCTTTGCTA 57.227 34.783 0.00 0.01 45.13 3.49
2126 2512 5.523369 ACTTCTTTGCAACATCTTTGCTAC 58.477 37.500 0.00 0.00 45.13 3.58
2127 2513 5.067674 ACTTCTTTGCAACATCTTTGCTACA 59.932 36.000 0.00 0.00 45.13 2.74
2128 2514 5.710513 TCTTTGCAACATCTTTGCTACAT 57.289 34.783 0.00 0.00 45.13 2.29
2129 2515 5.463286 TCTTTGCAACATCTTTGCTACATG 58.537 37.500 0.00 0.00 45.13 3.21
2143 2529 7.497579 TCTTTGCTACATGTAGTCAACAGAAAA 59.502 33.333 28.95 13.47 42.70 2.29
2180 2582 2.429610 GTCATCCCGCCTTACAGTTCTA 59.570 50.000 0.00 0.00 0.00 2.10
2189 2591 7.070322 TCCCGCCTTACAGTTCTATTATAGTTT 59.930 37.037 0.00 0.00 0.00 2.66
2212 2614 5.534207 TGAATGTTTTGCATCTTCACCTT 57.466 34.783 0.00 0.00 36.67 3.50
2218 2620 4.356405 TTTGCATCTTCACCTTGAGAGA 57.644 40.909 0.00 0.00 0.00 3.10
2359 2765 2.950781 TCTCCCTCGATGCAGTATCTT 58.049 47.619 0.00 0.00 33.44 2.40
2391 2797 5.935789 TCGTGATAGTTTCTTTGTAAAGGGG 59.064 40.000 4.67 0.00 36.67 4.79
2394 2800 6.150641 GTGATAGTTTCTTTGTAAAGGGGTCC 59.849 42.308 4.67 0.00 36.67 4.46
2409 2815 1.592400 GGTCCGCCAGGTTTTTAGCC 61.592 60.000 0.00 0.00 39.05 3.93
2536 2942 8.955061 ATTCTTCACTTTGACGATATTTGTTG 57.045 30.769 0.00 0.00 0.00 3.33
2537 2943 7.722795 TCTTCACTTTGACGATATTTGTTGA 57.277 32.000 0.00 0.00 0.00 3.18
2538 2944 8.322906 TCTTCACTTTGACGATATTTGTTGAT 57.677 30.769 0.00 0.00 0.00 2.57
2541 2947 9.743057 TTCACTTTGACGATATTTGTTGATTTT 57.257 25.926 0.00 0.00 0.00 1.82
2570 2976 0.384669 ATAAGAGTAGTCGGCACCGC 59.615 55.000 3.66 0.00 39.59 5.68
2577 2983 4.072088 GTCGGCACCGCTTGTTCG 62.072 66.667 3.66 0.00 39.59 3.95
2593 3001 0.321564 TTCGACCAGGCAAGTCCATG 60.322 55.000 0.00 0.00 37.29 3.66
2645 3057 5.883673 TGGTTGTGACTAAAGCAGTAAGTTT 59.116 36.000 0.00 0.00 37.72 2.66
2676 3088 5.643379 TGGTTGACCTCATTAAAATGCTC 57.357 39.130 1.34 0.00 36.36 4.26
2680 3092 3.374988 TGACCTCATTAAAATGCTCTGCG 59.625 43.478 0.00 0.00 36.36 5.18
2743 3155 2.092429 ACATACCCACTTGTGCCATAGG 60.092 50.000 0.00 0.00 0.00 2.57
2769 3181 9.076596 GGCACATCAACATTAAAAATCTAGTTC 57.923 33.333 0.00 0.00 0.00 3.01
2798 3210 8.011844 TCACTATATCATTTGAGTACAGCAGT 57.988 34.615 0.00 0.00 0.00 4.40
2875 3287 1.542472 TGTCAAGTGCATGCCAATGAG 59.458 47.619 16.68 0.24 35.67 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.549794 CCAGTGCCAAAAATCCCAAAAA 58.450 40.909 0.00 0.00 0.00 1.94
9 10 2.747799 GCCAGTGCCAAAAATCCCAAAA 60.748 45.455 0.00 0.00 0.00 2.44
10 11 1.202746 GCCAGTGCCAAAAATCCCAAA 60.203 47.619 0.00 0.00 0.00 3.28
11 12 0.396060 GCCAGTGCCAAAAATCCCAA 59.604 50.000 0.00 0.00 0.00 4.12
12 13 0.471591 AGCCAGTGCCAAAAATCCCA 60.472 50.000 0.00 0.00 38.69 4.37
13 14 0.247460 GAGCCAGTGCCAAAAATCCC 59.753 55.000 0.00 0.00 38.69 3.85
14 15 0.109132 CGAGCCAGTGCCAAAAATCC 60.109 55.000 0.00 0.00 38.69 3.01
15 16 0.733909 GCGAGCCAGTGCCAAAAATC 60.734 55.000 0.00 0.00 38.69 2.17
16 17 1.181098 AGCGAGCCAGTGCCAAAAAT 61.181 50.000 0.00 0.00 38.69 1.82
17 18 1.827789 AGCGAGCCAGTGCCAAAAA 60.828 52.632 0.00 0.00 38.69 1.94
18 19 2.203337 AGCGAGCCAGTGCCAAAA 60.203 55.556 0.00 0.00 38.69 2.44
19 20 2.390306 TACAGCGAGCCAGTGCCAAA 62.390 55.000 0.00 0.00 38.69 3.28
20 21 2.390306 TTACAGCGAGCCAGTGCCAA 62.390 55.000 0.00 0.00 38.69 4.52
21 22 2.878089 TTACAGCGAGCCAGTGCCA 61.878 57.895 0.00 0.00 38.69 4.92
22 23 2.047274 TTACAGCGAGCCAGTGCC 60.047 61.111 0.00 0.00 38.69 5.01
23 24 2.730672 CGTTACAGCGAGCCAGTGC 61.731 63.158 0.00 0.00 37.95 4.40
24 25 2.730672 GCGTTACAGCGAGCCAGTG 61.731 63.158 0.00 0.00 0.00 3.66
25 26 2.432628 GCGTTACAGCGAGCCAGT 60.433 61.111 0.00 0.00 0.00 4.00
29 30 1.289109 TTCTTGGCGTTACAGCGAGC 61.289 55.000 0.00 0.00 38.18 5.03
30 31 1.136336 GTTTCTTGGCGTTACAGCGAG 60.136 52.381 0.00 0.00 38.18 5.03
31 32 0.863144 GTTTCTTGGCGTTACAGCGA 59.137 50.000 0.00 0.00 38.18 4.93
32 33 0.450482 CGTTTCTTGGCGTTACAGCG 60.450 55.000 0.00 0.00 38.18 5.18
33 34 0.110373 CCGTTTCTTGGCGTTACAGC 60.110 55.000 0.00 0.00 0.00 4.40
34 35 0.515564 CCCGTTTCTTGGCGTTACAG 59.484 55.000 0.00 0.00 0.00 2.74
35 36 1.508808 GCCCGTTTCTTGGCGTTACA 61.509 55.000 0.00 0.00 38.00 2.41
36 37 1.208358 GCCCGTTTCTTGGCGTTAC 59.792 57.895 0.00 0.00 38.00 2.50
37 38 3.658048 GCCCGTTTCTTGGCGTTA 58.342 55.556 0.00 0.00 38.00 3.18
54 55 4.473520 AAGACGAGCATGGGCCGG 62.474 66.667 0.00 0.00 42.56 6.13
55 56 2.859273 AAGAAGACGAGCATGGGCCG 62.859 60.000 0.00 0.00 42.56 6.13
56 57 1.078143 AAGAAGACGAGCATGGGCC 60.078 57.895 0.00 0.00 42.56 5.80
57 58 0.391661 TCAAGAAGACGAGCATGGGC 60.392 55.000 0.00 0.00 41.61 5.36
58 59 1.363744 GTCAAGAAGACGAGCATGGG 58.636 55.000 0.00 0.00 37.53 4.00
68 69 0.387367 GCTCGCGTGAGTCAAGAAGA 60.387 55.000 25.72 7.28 44.48 2.87
69 70 1.669158 CGCTCGCGTGAGTCAAGAAG 61.669 60.000 25.72 7.29 44.48 2.85
70 71 1.729484 CGCTCGCGTGAGTCAAGAA 60.729 57.895 25.72 0.00 44.48 2.52
71 72 2.126850 CGCTCGCGTGAGTCAAGA 60.127 61.111 25.72 2.41 44.48 3.02
81 82 4.914420 CCCTAGCTGACGCTCGCG 62.914 72.222 10.06 10.06 45.15 5.87
82 83 4.577246 CCCCTAGCTGACGCTCGC 62.577 72.222 0.00 0.00 45.15 5.03
83 84 4.577246 GCCCCTAGCTGACGCTCG 62.577 72.222 0.00 0.00 45.15 5.03
100 101 1.276421 CAAGATATAGGGGTGCGGGAG 59.724 57.143 0.00 0.00 0.00 4.30
101 102 1.348064 CAAGATATAGGGGTGCGGGA 58.652 55.000 0.00 0.00 0.00 5.14
102 103 0.321653 GCAAGATATAGGGGTGCGGG 60.322 60.000 0.00 0.00 0.00 6.13
103 104 0.321653 GGCAAGATATAGGGGTGCGG 60.322 60.000 0.00 0.00 0.00 5.69
104 105 0.687354 AGGCAAGATATAGGGGTGCG 59.313 55.000 0.00 0.00 0.00 5.34
105 106 2.106511 TGAAGGCAAGATATAGGGGTGC 59.893 50.000 0.00 0.00 0.00 5.01
106 107 3.808618 GCTGAAGGCAAGATATAGGGGTG 60.809 52.174 0.00 0.00 41.35 4.61
107 108 2.373502 GCTGAAGGCAAGATATAGGGGT 59.626 50.000 0.00 0.00 41.35 4.95
108 109 2.613977 CGCTGAAGGCAAGATATAGGGG 60.614 54.545 0.00 0.00 41.91 4.79
109 110 2.300152 TCGCTGAAGGCAAGATATAGGG 59.700 50.000 0.00 0.00 41.91 3.53
110 111 3.006323 ACTCGCTGAAGGCAAGATATAGG 59.994 47.826 0.00 0.00 41.91 2.57
111 112 4.250116 ACTCGCTGAAGGCAAGATATAG 57.750 45.455 0.00 0.00 41.91 1.31
112 113 5.984695 ATACTCGCTGAAGGCAAGATATA 57.015 39.130 0.00 0.00 41.91 0.86
113 114 4.881019 ATACTCGCTGAAGGCAAGATAT 57.119 40.909 0.00 0.00 41.91 1.63
114 115 5.984695 ATATACTCGCTGAAGGCAAGATA 57.015 39.130 0.00 0.00 41.91 1.98
115 116 4.881019 ATATACTCGCTGAAGGCAAGAT 57.119 40.909 0.00 0.00 41.91 2.40
116 117 4.218635 CCTATATACTCGCTGAAGGCAAGA 59.781 45.833 0.00 0.00 41.91 3.02
117 118 4.489810 CCTATATACTCGCTGAAGGCAAG 58.510 47.826 0.00 0.00 41.91 4.01
118 119 3.258372 CCCTATATACTCGCTGAAGGCAA 59.742 47.826 0.00 0.00 41.91 4.52
119 120 2.826128 CCCTATATACTCGCTGAAGGCA 59.174 50.000 0.00 0.00 41.91 4.75
120 121 3.090037 TCCCTATATACTCGCTGAAGGC 58.910 50.000 0.00 0.00 37.64 4.35
121 122 5.723672 TTTCCCTATATACTCGCTGAAGG 57.276 43.478 0.00 0.00 0.00 3.46
122 123 6.513180 TGTTTTCCCTATATACTCGCTGAAG 58.487 40.000 0.00 0.00 0.00 3.02
123 124 6.474140 TGTTTTCCCTATATACTCGCTGAA 57.526 37.500 0.00 0.00 0.00 3.02
124 125 6.041637 ACATGTTTTCCCTATATACTCGCTGA 59.958 38.462 0.00 0.00 0.00 4.26
125 126 6.223852 ACATGTTTTCCCTATATACTCGCTG 58.776 40.000 0.00 0.00 0.00 5.18
126 127 6.420913 ACATGTTTTCCCTATATACTCGCT 57.579 37.500 0.00 0.00 0.00 4.93
127 128 6.704493 TCAACATGTTTTCCCTATATACTCGC 59.296 38.462 8.77 0.00 0.00 5.03
128 129 7.170998 GGTCAACATGTTTTCCCTATATACTCG 59.829 40.741 8.77 0.00 0.00 4.18
129 130 7.990886 TGGTCAACATGTTTTCCCTATATACTC 59.009 37.037 19.75 0.21 0.00 2.59
130 131 7.867921 TGGTCAACATGTTTTCCCTATATACT 58.132 34.615 19.75 0.00 0.00 2.12
131 132 8.691661 ATGGTCAACATGTTTTCCCTATATAC 57.308 34.615 19.75 4.20 38.70 1.47
132 133 8.723365 AGATGGTCAACATGTTTTCCCTATATA 58.277 33.333 19.75 6.55 40.72 0.86
133 134 7.586349 AGATGGTCAACATGTTTTCCCTATAT 58.414 34.615 19.75 10.68 40.72 0.86
134 135 6.969043 AGATGGTCAACATGTTTTCCCTATA 58.031 36.000 19.75 7.36 40.72 1.31
135 136 5.831103 AGATGGTCAACATGTTTTCCCTAT 58.169 37.500 19.75 11.46 40.72 2.57
136 137 5.255397 AGATGGTCAACATGTTTTCCCTA 57.745 39.130 19.75 8.16 40.72 3.53
137 138 4.118168 AGATGGTCAACATGTTTTCCCT 57.882 40.909 19.75 13.36 40.72 4.20
138 139 6.152661 TGAATAGATGGTCAACATGTTTTCCC 59.847 38.462 19.75 15.08 38.87 3.97
139 140 7.156876 TGAATAGATGGTCAACATGTTTTCC 57.843 36.000 8.77 14.18 38.87 3.13
140 141 9.474920 TTTTGAATAGATGGTCAACATGTTTTC 57.525 29.630 8.77 7.55 40.72 2.29
141 142 9.829507 TTTTTGAATAGATGGTCAACATGTTTT 57.170 25.926 8.77 0.00 40.72 2.43
223 224 9.995003 AGTGCAAATTAAACATTTTCTAATCCA 57.005 25.926 0.00 0.00 0.00 3.41
302 303 9.990360 ATTATGGTTTTATTTGTTCTTTCGGTT 57.010 25.926 0.00 0.00 0.00 4.44
424 425 9.516314 CAGGATTTTAGTTTTCGTTTTTCTCTT 57.484 29.630 0.00 0.00 0.00 2.85
425 426 8.135529 CCAGGATTTTAGTTTTCGTTTTTCTCT 58.864 33.333 0.00 0.00 0.00 3.10
426 427 8.132995 TCCAGGATTTTAGTTTTCGTTTTTCTC 58.867 33.333 0.00 0.00 0.00 2.87
427 428 8.002984 TCCAGGATTTTAGTTTTCGTTTTTCT 57.997 30.769 0.00 0.00 0.00 2.52
428 429 8.637281 TTCCAGGATTTTAGTTTTCGTTTTTC 57.363 30.769 0.00 0.00 0.00 2.29
429 430 9.438228 TTTTCCAGGATTTTAGTTTTCGTTTTT 57.562 25.926 0.00 0.00 0.00 1.94
430 431 8.875803 GTTTTCCAGGATTTTAGTTTTCGTTTT 58.124 29.630 0.00 0.00 0.00 2.43
431 432 7.493320 GGTTTTCCAGGATTTTAGTTTTCGTTT 59.507 33.333 0.00 0.00 40.31 3.60
432 433 6.982141 GGTTTTCCAGGATTTTAGTTTTCGTT 59.018 34.615 0.00 0.00 40.31 3.85
433 434 6.097129 TGGTTTTCCAGGATTTTAGTTTTCGT 59.903 34.615 0.00 0.00 46.22 3.85
434 435 6.508777 TGGTTTTCCAGGATTTTAGTTTTCG 58.491 36.000 0.00 0.00 46.22 3.46
450 451 3.694566 AGCCGATTTATCACTGGTTTTCC 59.305 43.478 0.00 0.00 41.14 3.13
451 452 4.965119 AGCCGATTTATCACTGGTTTTC 57.035 40.909 0.00 0.00 0.00 2.29
452 453 7.257722 CAATAAGCCGATTTATCACTGGTTTT 58.742 34.615 0.00 0.00 0.00 2.43
453 454 6.680378 GCAATAAGCCGATTTATCACTGGTTT 60.680 38.462 0.00 0.00 37.23 3.27
454 455 5.221048 GCAATAAGCCGATTTATCACTGGTT 60.221 40.000 0.00 0.00 37.23 3.67
455 456 4.275936 GCAATAAGCCGATTTATCACTGGT 59.724 41.667 0.00 0.00 37.23 4.00
456 457 4.611355 CGCAATAAGCCGATTTATCACTGG 60.611 45.833 0.00 0.00 41.38 4.00
457 458 4.024893 ACGCAATAAGCCGATTTATCACTG 60.025 41.667 0.00 0.00 41.38 3.66
458 459 4.127171 ACGCAATAAGCCGATTTATCACT 58.873 39.130 0.00 0.00 41.38 3.41
459 460 4.211374 AGACGCAATAAGCCGATTTATCAC 59.789 41.667 0.00 0.00 41.38 3.06
460 461 4.377021 AGACGCAATAAGCCGATTTATCA 58.623 39.130 0.00 0.00 41.38 2.15
461 462 4.447724 TGAGACGCAATAAGCCGATTTATC 59.552 41.667 0.00 0.00 41.38 1.75
462 463 4.377021 TGAGACGCAATAAGCCGATTTAT 58.623 39.130 0.00 0.00 41.38 1.40
463 464 3.787785 TGAGACGCAATAAGCCGATTTA 58.212 40.909 0.00 0.00 41.38 1.40
464 465 2.627945 TGAGACGCAATAAGCCGATTT 58.372 42.857 0.00 0.00 41.38 2.17
465 466 2.309528 TGAGACGCAATAAGCCGATT 57.690 45.000 0.00 0.00 41.38 3.34
466 467 2.205074 CTTGAGACGCAATAAGCCGAT 58.795 47.619 0.00 0.00 41.38 4.18
467 468 1.067142 ACTTGAGACGCAATAAGCCGA 60.067 47.619 0.00 0.00 41.38 5.54
468 469 1.359848 ACTTGAGACGCAATAAGCCG 58.640 50.000 0.00 0.00 41.38 5.52
469 470 3.782046 TCTACTTGAGACGCAATAAGCC 58.218 45.455 0.00 0.00 41.38 4.35
470 471 4.147306 CGATCTACTTGAGACGCAATAAGC 59.853 45.833 0.00 0.00 36.87 3.09
471 472 4.147306 GCGATCTACTTGAGACGCAATAAG 59.853 45.833 0.00 0.00 45.74 1.73
472 473 4.042398 GCGATCTACTTGAGACGCAATAA 58.958 43.478 0.00 0.00 45.74 1.40
473 474 3.629058 GCGATCTACTTGAGACGCAATA 58.371 45.455 0.00 0.00 45.74 1.90
474 475 2.464865 GCGATCTACTTGAGACGCAAT 58.535 47.619 0.00 0.00 45.74 3.56
475 476 1.909376 GCGATCTACTTGAGACGCAA 58.091 50.000 0.00 0.00 45.74 4.85
476 477 3.624305 GCGATCTACTTGAGACGCA 57.376 52.632 0.00 0.00 45.74 5.24
477 478 1.598430 GGAGCGATCTACTTGAGACGC 60.598 57.143 0.00 0.00 46.28 5.19
478 479 1.002251 GGGAGCGATCTACTTGAGACG 60.002 57.143 0.00 0.00 36.87 4.18
479 480 2.303175 AGGGAGCGATCTACTTGAGAC 58.697 52.381 0.00 0.00 36.87 3.36
480 481 2.690497 CAAGGGAGCGATCTACTTGAGA 59.310 50.000 24.23 0.00 38.57 3.27
481 482 2.428890 ACAAGGGAGCGATCTACTTGAG 59.571 50.000 30.53 15.40 38.57 3.02
482 483 2.457598 ACAAGGGAGCGATCTACTTGA 58.542 47.619 30.53 0.00 38.57 3.02
483 484 2.969628 ACAAGGGAGCGATCTACTTG 57.030 50.000 25.68 25.68 40.41 3.16
484 485 3.633418 AGTACAAGGGAGCGATCTACTT 58.367 45.455 0.00 2.88 0.00 2.24
485 486 3.300239 AGTACAAGGGAGCGATCTACT 57.700 47.619 0.00 0.00 0.00 2.57
486 487 4.387598 TCTAGTACAAGGGAGCGATCTAC 58.612 47.826 0.00 0.00 0.00 2.59
487 488 4.701651 TCTAGTACAAGGGAGCGATCTA 57.298 45.455 0.00 0.00 0.00 1.98
488 489 3.579534 TCTAGTACAAGGGAGCGATCT 57.420 47.619 0.00 0.00 0.00 2.75
489 490 3.633065 AGTTCTAGTACAAGGGAGCGATC 59.367 47.826 2.11 0.00 0.00 3.69
490 491 3.633418 AGTTCTAGTACAAGGGAGCGAT 58.367 45.455 2.11 0.00 0.00 4.58
491 492 3.083122 AGTTCTAGTACAAGGGAGCGA 57.917 47.619 2.11 0.00 0.00 4.93
492 493 3.192844 TCAAGTTCTAGTACAAGGGAGCG 59.807 47.826 2.11 0.00 0.00 5.03
493 494 4.496360 GTCAAGTTCTAGTACAAGGGAGC 58.504 47.826 2.11 0.00 0.00 4.70
494 495 4.081586 GGGTCAAGTTCTAGTACAAGGGAG 60.082 50.000 2.11 0.00 0.00 4.30
495 496 3.836562 GGGTCAAGTTCTAGTACAAGGGA 59.163 47.826 2.11 0.00 0.00 4.20
496 497 3.055312 GGGGTCAAGTTCTAGTACAAGGG 60.055 52.174 2.11 0.00 0.00 3.95
497 498 3.581332 TGGGGTCAAGTTCTAGTACAAGG 59.419 47.826 2.11 0.00 0.00 3.61
498 499 4.822026 CTGGGGTCAAGTTCTAGTACAAG 58.178 47.826 2.11 0.00 0.00 3.16
499 500 3.007614 GCTGGGGTCAAGTTCTAGTACAA 59.992 47.826 2.11 0.00 0.00 2.41
500 501 2.565834 GCTGGGGTCAAGTTCTAGTACA 59.434 50.000 2.11 0.00 0.00 2.90
501 502 2.093606 GGCTGGGGTCAAGTTCTAGTAC 60.094 54.545 0.00 0.00 0.00 2.73
502 503 2.185387 GGCTGGGGTCAAGTTCTAGTA 58.815 52.381 0.00 0.00 0.00 1.82
503 504 0.984995 GGCTGGGGTCAAGTTCTAGT 59.015 55.000 0.00 0.00 0.00 2.57
504 505 1.280457 AGGCTGGGGTCAAGTTCTAG 58.720 55.000 0.00 0.00 0.00 2.43
505 506 2.225547 ACTAGGCTGGGGTCAAGTTCTA 60.226 50.000 2.02 0.00 0.00 2.10
506 507 1.280457 CTAGGCTGGGGTCAAGTTCT 58.720 55.000 0.00 0.00 0.00 3.01
507 508 0.984995 ACTAGGCTGGGGTCAAGTTC 59.015 55.000 2.02 0.00 0.00 3.01
508 509 0.693049 CACTAGGCTGGGGTCAAGTT 59.307 55.000 2.02 0.00 0.00 2.66
509 510 1.201429 CCACTAGGCTGGGGTCAAGT 61.201 60.000 2.02 0.00 0.00 3.16
510 511 1.604378 CCACTAGGCTGGGGTCAAG 59.396 63.158 2.02 0.00 0.00 3.02
511 512 3.820425 CCACTAGGCTGGGGTCAA 58.180 61.111 2.02 0.00 0.00 3.18
528 529 4.632688 TGGTTAATAGAAGGCGTTGTTAGC 59.367 41.667 0.00 0.00 0.00 3.09
529 530 5.220605 GCTGGTTAATAGAAGGCGTTGTTAG 60.221 44.000 0.00 0.00 0.00 2.34
530 531 4.632688 GCTGGTTAATAGAAGGCGTTGTTA 59.367 41.667 0.00 0.00 0.00 2.41
531 532 3.439129 GCTGGTTAATAGAAGGCGTTGTT 59.561 43.478 0.00 0.00 0.00 2.83
532 533 3.007635 GCTGGTTAATAGAAGGCGTTGT 58.992 45.455 0.00 0.00 0.00 3.32
533 534 3.006940 TGCTGGTTAATAGAAGGCGTTG 58.993 45.455 0.00 0.00 0.00 4.10
534 535 3.055385 TCTGCTGGTTAATAGAAGGCGTT 60.055 43.478 0.00 0.00 0.00 4.84
535 536 2.500098 TCTGCTGGTTAATAGAAGGCGT 59.500 45.455 0.00 0.00 0.00 5.68
536 537 2.866762 GTCTGCTGGTTAATAGAAGGCG 59.133 50.000 0.00 0.00 0.00 5.52
537 538 3.206964 GGTCTGCTGGTTAATAGAAGGC 58.793 50.000 0.00 0.00 0.00 4.35
538 539 3.741388 CGGGTCTGCTGGTTAATAGAAGG 60.741 52.174 0.00 0.00 0.00 3.46
539 540 3.132289 TCGGGTCTGCTGGTTAATAGAAG 59.868 47.826 0.00 0.00 0.00 2.85
540 541 3.101437 TCGGGTCTGCTGGTTAATAGAA 58.899 45.455 0.00 0.00 0.00 2.10
541 542 2.693591 CTCGGGTCTGCTGGTTAATAGA 59.306 50.000 0.00 0.00 0.00 1.98
542 543 2.693591 TCTCGGGTCTGCTGGTTAATAG 59.306 50.000 0.00 0.00 0.00 1.73
543 544 2.742348 TCTCGGGTCTGCTGGTTAATA 58.258 47.619 0.00 0.00 0.00 0.98
544 545 1.568504 TCTCGGGTCTGCTGGTTAAT 58.431 50.000 0.00 0.00 0.00 1.40
545 546 1.480954 GATCTCGGGTCTGCTGGTTAA 59.519 52.381 0.00 0.00 0.00 2.01
546 547 1.112113 GATCTCGGGTCTGCTGGTTA 58.888 55.000 0.00 0.00 0.00 2.85
547 548 0.904865 TGATCTCGGGTCTGCTGGTT 60.905 55.000 0.00 0.00 0.00 3.67
548 549 0.904865 TTGATCTCGGGTCTGCTGGT 60.905 55.000 0.00 0.00 0.00 4.00
549 550 0.250234 TTTGATCTCGGGTCTGCTGG 59.750 55.000 0.00 0.00 0.00 4.85
550 551 1.363744 GTTTGATCTCGGGTCTGCTG 58.636 55.000 0.00 0.00 0.00 4.41
551 552 0.250513 GGTTTGATCTCGGGTCTGCT 59.749 55.000 0.00 0.00 0.00 4.24
552 553 0.744771 GGGTTTGATCTCGGGTCTGC 60.745 60.000 0.00 0.00 0.00 4.26
553 554 0.107654 GGGGTTTGATCTCGGGTCTG 60.108 60.000 0.00 0.00 0.00 3.51
554 555 1.272554 GGGGGTTTGATCTCGGGTCT 61.273 60.000 0.00 0.00 0.00 3.85
555 556 1.223763 GGGGGTTTGATCTCGGGTC 59.776 63.158 0.00 0.00 0.00 4.46
556 557 1.540367 TGGGGGTTTGATCTCGGGT 60.540 57.895 0.00 0.00 0.00 5.28
557 558 1.077716 GTGGGGGTTTGATCTCGGG 60.078 63.158 0.00 0.00 0.00 5.14
558 559 0.255890 ATGTGGGGGTTTGATCTCGG 59.744 55.000 0.00 0.00 0.00 4.63
559 560 1.382522 CATGTGGGGGTTTGATCTCG 58.617 55.000 0.00 0.00 0.00 4.04
560 561 1.106285 GCATGTGGGGGTTTGATCTC 58.894 55.000 0.00 0.00 0.00 2.75
561 562 0.680921 CGCATGTGGGGGTTTGATCT 60.681 55.000 0.00 0.00 0.00 2.75
562 563 1.809207 CGCATGTGGGGGTTTGATC 59.191 57.895 0.00 0.00 0.00 2.92
563 564 2.350458 GCGCATGTGGGGGTTTGAT 61.350 57.895 8.62 0.00 0.00 2.57
564 565 2.988684 GCGCATGTGGGGGTTTGA 60.989 61.111 8.62 0.00 0.00 2.69
565 566 4.418401 CGCGCATGTGGGGGTTTG 62.418 66.667 15.11 0.00 36.43 2.93
571 572 2.476534 AAAAAGAGCGCGCATGTGGG 62.477 55.000 35.10 18.24 0.00 4.61
572 573 1.081242 AAAAAGAGCGCGCATGTGG 60.081 52.632 35.10 0.00 0.00 4.17
573 574 4.539152 AAAAAGAGCGCGCATGTG 57.461 50.000 35.10 0.66 0.00 3.21
588 589 6.516028 GCTCCCGTTGGAAAGAAATAGAAAAA 60.516 38.462 0.00 0.00 41.17 1.94
589 590 5.048294 GCTCCCGTTGGAAAGAAATAGAAAA 60.048 40.000 0.00 0.00 41.17 2.29
590 591 4.457949 GCTCCCGTTGGAAAGAAATAGAAA 59.542 41.667 0.00 0.00 41.17 2.52
591 592 4.007659 GCTCCCGTTGGAAAGAAATAGAA 58.992 43.478 0.00 0.00 41.17 2.10
592 593 3.263425 AGCTCCCGTTGGAAAGAAATAGA 59.737 43.478 0.00 0.00 41.17 1.98
593 594 3.610911 AGCTCCCGTTGGAAAGAAATAG 58.389 45.455 0.00 0.00 41.17 1.73
594 595 3.713826 AGCTCCCGTTGGAAAGAAATA 57.286 42.857 0.00 0.00 41.17 1.40
595 596 2.586648 AGCTCCCGTTGGAAAGAAAT 57.413 45.000 0.00 0.00 41.17 2.17
596 597 3.495434 TTAGCTCCCGTTGGAAAGAAA 57.505 42.857 0.00 0.00 41.17 2.52
597 598 3.343617 CATTAGCTCCCGTTGGAAAGAA 58.656 45.455 0.00 0.00 41.17 2.52
598 599 2.355716 CCATTAGCTCCCGTTGGAAAGA 60.356 50.000 0.00 0.00 41.17 2.52
599 600 2.017049 CCATTAGCTCCCGTTGGAAAG 58.983 52.381 0.00 0.00 41.17 2.62
600 601 1.340600 CCCATTAGCTCCCGTTGGAAA 60.341 52.381 0.00 0.00 41.17 3.13
601 602 0.254747 CCCATTAGCTCCCGTTGGAA 59.745 55.000 0.00 0.00 41.17 3.53
602 603 1.912220 CCCATTAGCTCCCGTTGGA 59.088 57.895 0.00 0.00 38.75 3.53
603 604 1.823899 GCCCATTAGCTCCCGTTGG 60.824 63.158 0.00 0.00 0.00 3.77
604 605 1.097547 CAGCCCATTAGCTCCCGTTG 61.098 60.000 0.00 0.00 42.61 4.10
605 606 1.224592 CAGCCCATTAGCTCCCGTT 59.775 57.895 0.00 0.00 42.61 4.44
606 607 1.689233 TCAGCCCATTAGCTCCCGT 60.689 57.895 0.00 0.00 42.61 5.28
607 608 1.227674 GTCAGCCCATTAGCTCCCG 60.228 63.158 0.00 0.00 42.61 5.14
608 609 0.464554 GTGTCAGCCCATTAGCTCCC 60.465 60.000 0.00 0.00 42.61 4.30
609 610 0.811616 CGTGTCAGCCCATTAGCTCC 60.812 60.000 0.00 0.00 42.61 4.70
610 611 0.108138 ACGTGTCAGCCCATTAGCTC 60.108 55.000 0.00 0.00 42.61 4.09
611 612 0.324943 AACGTGTCAGCCCATTAGCT 59.675 50.000 0.00 0.00 46.45 3.32
612 613 1.664151 GTAACGTGTCAGCCCATTAGC 59.336 52.381 0.00 0.00 0.00 3.09
613 614 3.119101 AGAGTAACGTGTCAGCCCATTAG 60.119 47.826 0.00 0.00 0.00 1.73
614 615 2.829720 AGAGTAACGTGTCAGCCCATTA 59.170 45.455 0.00 0.00 0.00 1.90
615 616 1.623811 AGAGTAACGTGTCAGCCCATT 59.376 47.619 0.00 0.00 0.00 3.16
616 617 1.267121 AGAGTAACGTGTCAGCCCAT 58.733 50.000 0.00 0.00 0.00 4.00
617 618 1.542915 GTAGAGTAACGTGTCAGCCCA 59.457 52.381 0.00 0.00 0.00 5.36
618 619 1.542915 TGTAGAGTAACGTGTCAGCCC 59.457 52.381 0.00 0.00 0.00 5.19
619 620 2.228343 AGTGTAGAGTAACGTGTCAGCC 59.772 50.000 0.00 0.00 0.00 4.85
620 621 3.188873 AGAGTGTAGAGTAACGTGTCAGC 59.811 47.826 0.00 0.00 0.00 4.26
621 622 5.147865 CAAGAGTGTAGAGTAACGTGTCAG 58.852 45.833 0.00 0.00 0.00 3.51
622 623 4.556104 GCAAGAGTGTAGAGTAACGTGTCA 60.556 45.833 0.00 0.00 0.00 3.58
623 624 3.913163 GCAAGAGTGTAGAGTAACGTGTC 59.087 47.826 0.00 0.00 0.00 3.67
624 625 3.608707 CGCAAGAGTGTAGAGTAACGTGT 60.609 47.826 0.00 0.00 43.02 4.49
625 626 2.909244 CGCAAGAGTGTAGAGTAACGTG 59.091 50.000 0.00 0.00 43.02 4.49
626 627 2.551459 ACGCAAGAGTGTAGAGTAACGT 59.449 45.455 0.00 0.00 43.62 3.99
627 628 2.909244 CACGCAAGAGTGTAGAGTAACG 59.091 50.000 0.00 0.00 43.62 3.18
628 629 2.662156 GCACGCAAGAGTGTAGAGTAAC 59.338 50.000 5.86 0.00 43.61 2.50
629 630 2.667448 CGCACGCAAGAGTGTAGAGTAA 60.667 50.000 5.86 0.00 43.61 2.24
630 631 1.135774 CGCACGCAAGAGTGTAGAGTA 60.136 52.381 5.86 0.00 43.61 2.59
631 632 0.387367 CGCACGCAAGAGTGTAGAGT 60.387 55.000 5.86 0.00 43.61 3.24
632 633 0.109735 TCGCACGCAAGAGTGTAGAG 60.110 55.000 5.86 0.00 43.61 2.43
633 634 0.109735 CTCGCACGCAAGAGTGTAGA 60.110 55.000 5.86 5.29 43.61 2.59
634 635 0.109735 TCTCGCACGCAAGAGTGTAG 60.110 55.000 5.86 4.47 43.61 2.74
635 636 0.109735 CTCTCGCACGCAAGAGTGTA 60.110 55.000 5.86 0.00 43.61 2.90
636 637 1.372251 CTCTCGCACGCAAGAGTGT 60.372 57.895 5.86 0.00 43.61 3.55
637 638 0.457509 ATCTCTCGCACGCAAGAGTG 60.458 55.000 6.87 0.00 44.47 3.51
638 639 0.179150 GATCTCTCGCACGCAAGAGT 60.179 55.000 6.87 0.00 39.99 3.24
639 640 0.869454 GGATCTCTCGCACGCAAGAG 60.869 60.000 0.33 0.33 40.34 2.85
640 641 1.139734 GGATCTCTCGCACGCAAGA 59.860 57.895 0.00 0.00 43.62 3.02
642 643 0.037326 AAAGGATCTCTCGCACGCAA 60.037 50.000 0.00 0.00 0.00 4.85
643 644 0.037326 AAAAGGATCTCTCGCACGCA 60.037 50.000 0.00 0.00 0.00 5.24
644 645 1.922570 TAAAAGGATCTCTCGCACGC 58.077 50.000 0.00 0.00 0.00 5.34
645 646 3.971150 AGATAAAAGGATCTCTCGCACG 58.029 45.455 0.00 0.00 29.85 5.34
650 651 7.148656 GCATTAAGCGAGATAAAAGGATCTCTC 60.149 40.741 10.74 4.08 46.60 3.20
651 652 6.648725 GCATTAAGCGAGATAAAAGGATCTCT 59.351 38.462 10.74 0.00 46.60 3.10
652 653 6.826612 GCATTAAGCGAGATAAAAGGATCTC 58.173 40.000 3.75 3.75 45.73 2.75
653 654 6.793492 GCATTAAGCGAGATAAAAGGATCT 57.207 37.500 0.00 0.00 38.94 2.75
668 669 3.308323 GGCAGCTATATCTCGCATTAAGC 59.692 47.826 0.00 0.00 40.87 3.09
669 670 3.549471 CGGCAGCTATATCTCGCATTAAG 59.451 47.826 0.00 0.00 0.00 1.85
670 671 3.511699 CGGCAGCTATATCTCGCATTAA 58.488 45.455 0.00 0.00 0.00 1.40
671 672 2.735444 GCGGCAGCTATATCTCGCATTA 60.735 50.000 0.00 0.00 42.27 1.90
672 673 2.001812 CGGCAGCTATATCTCGCATT 57.998 50.000 0.00 0.00 0.00 3.56
673 674 0.459237 GCGGCAGCTATATCTCGCAT 60.459 55.000 0.00 0.00 42.27 4.73
674 675 1.080501 GCGGCAGCTATATCTCGCA 60.081 57.895 0.00 0.00 42.27 5.10
675 676 2.155194 CGCGGCAGCTATATCTCGC 61.155 63.158 7.38 0.00 42.32 5.03
676 677 1.515088 CCGCGGCAGCTATATCTCG 60.515 63.158 14.67 0.00 42.32 4.04
677 678 1.153745 CCCGCGGCAGCTATATCTC 60.154 63.158 22.85 0.00 42.32 2.75
678 679 2.973899 CCCGCGGCAGCTATATCT 59.026 61.111 22.85 0.00 42.32 1.98
689 690 2.639286 GATGCTAATTGCCCGCGG 59.361 61.111 21.04 21.04 42.00 6.46
690 691 1.518056 ATGGATGCTAATTGCCCGCG 61.518 55.000 0.00 0.00 42.00 6.46
691 692 0.038892 CATGGATGCTAATTGCCCGC 60.039 55.000 0.00 0.00 42.00 6.13
692 693 1.267806 GTCATGGATGCTAATTGCCCG 59.732 52.381 0.00 0.00 42.00 6.13
693 694 2.035066 GTGTCATGGATGCTAATTGCCC 59.965 50.000 0.00 0.00 42.00 5.36
694 695 2.287188 CGTGTCATGGATGCTAATTGCC 60.287 50.000 0.00 0.00 42.00 4.52
695 696 2.613595 TCGTGTCATGGATGCTAATTGC 59.386 45.455 0.00 0.00 43.25 3.56
696 697 6.365839 GTTATCGTGTCATGGATGCTAATTG 58.634 40.000 0.00 0.00 0.00 2.32
697 698 5.177511 CGTTATCGTGTCATGGATGCTAATT 59.822 40.000 0.00 0.00 0.00 1.40
698 699 4.686091 CGTTATCGTGTCATGGATGCTAAT 59.314 41.667 0.00 0.00 0.00 1.73
699 700 4.048504 CGTTATCGTGTCATGGATGCTAA 58.951 43.478 0.00 0.00 0.00 3.09
700 701 3.638484 CGTTATCGTGTCATGGATGCTA 58.362 45.455 0.00 0.00 0.00 3.49
701 702 2.473816 CGTTATCGTGTCATGGATGCT 58.526 47.619 0.00 0.00 0.00 3.79
702 703 1.070577 GCGTTATCGTGTCATGGATGC 60.071 52.381 0.00 0.00 39.49 3.91
703 704 1.190103 CGCGTTATCGTGTCATGGATG 59.810 52.381 0.00 0.00 41.80 3.51
704 705 1.487482 CGCGTTATCGTGTCATGGAT 58.513 50.000 0.00 0.00 41.80 3.41
705 706 2.952273 CGCGTTATCGTGTCATGGA 58.048 52.632 0.00 0.00 41.80 3.41
713 714 1.205657 CATTAGGCACGCGTTATCGT 58.794 50.000 10.22 6.17 44.35 3.73
714 715 0.506932 CCATTAGGCACGCGTTATCG 59.493 55.000 10.22 0.00 40.37 2.92
715 716 0.865769 CCCATTAGGCACGCGTTATC 59.134 55.000 10.22 1.38 0.00 1.75
716 717 3.000815 CCCATTAGGCACGCGTTAT 57.999 52.632 10.22 0.00 0.00 1.89
717 718 4.524869 CCCATTAGGCACGCGTTA 57.475 55.556 10.22 0.00 0.00 3.18
726 727 9.561069 GTATATATTTGTAGGATGCCCATTAGG 57.439 37.037 0.00 0.00 39.47 2.69
728 729 9.899661 GTGTATATATTTGTAGGATGCCCATTA 57.100 33.333 0.00 0.00 33.88 1.90
729 730 7.552687 CGTGTATATATTTGTAGGATGCCCATT 59.447 37.037 0.00 0.00 33.88 3.16
730 731 7.047891 CGTGTATATATTTGTAGGATGCCCAT 58.952 38.462 0.00 0.00 33.88 4.00
731 732 6.211785 TCGTGTATATATTTGTAGGATGCCCA 59.788 38.462 0.00 0.00 33.88 5.36
732 733 6.534079 GTCGTGTATATATTTGTAGGATGCCC 59.466 42.308 0.00 0.00 0.00 5.36
733 734 7.321153 AGTCGTGTATATATTTGTAGGATGCC 58.679 38.462 0.00 0.00 0.00 4.40
734 735 8.027189 TGAGTCGTGTATATATTTGTAGGATGC 58.973 37.037 0.00 0.00 0.00 3.91
735 736 9.908152 TTGAGTCGTGTATATATTTGTAGGATG 57.092 33.333 0.00 0.00 0.00 3.51
748 749 9.027129 GCTTACAAACATATTGAGTCGTGTATA 57.973 33.333 0.00 0.00 0.00 1.47
749 750 7.011109 GGCTTACAAACATATTGAGTCGTGTAT 59.989 37.037 0.00 0.00 0.00 2.29
750 751 6.311935 GGCTTACAAACATATTGAGTCGTGTA 59.688 38.462 0.00 0.00 0.00 2.90
751 752 5.121768 GGCTTACAAACATATTGAGTCGTGT 59.878 40.000 0.00 0.00 0.00 4.49
752 753 5.447279 GGGCTTACAAACATATTGAGTCGTG 60.447 44.000 0.00 0.00 0.00 4.35
753 754 4.634443 GGGCTTACAAACATATTGAGTCGT 59.366 41.667 0.00 0.00 0.00 4.34
754 755 4.035208 GGGGCTTACAAACATATTGAGTCG 59.965 45.833 0.00 0.00 0.00 4.18
755 756 4.035208 CGGGGCTTACAAACATATTGAGTC 59.965 45.833 0.00 0.00 0.00 3.36
756 757 3.945285 CGGGGCTTACAAACATATTGAGT 59.055 43.478 0.00 0.00 0.00 3.41
757 758 4.196193 TCGGGGCTTACAAACATATTGAG 58.804 43.478 0.00 0.00 0.00 3.02
758 759 4.223556 TCGGGGCTTACAAACATATTGA 57.776 40.909 0.00 0.00 0.00 2.57
759 760 4.202010 CCTTCGGGGCTTACAAACATATTG 60.202 45.833 0.00 0.00 0.00 1.90
760 761 3.951680 CCTTCGGGGCTTACAAACATATT 59.048 43.478 0.00 0.00 0.00 1.28
761 762 3.551846 CCTTCGGGGCTTACAAACATAT 58.448 45.455 0.00 0.00 0.00 1.78
762 763 2.993937 CCTTCGGGGCTTACAAACATA 58.006 47.619 0.00 0.00 0.00 2.29
763 764 1.834188 CCTTCGGGGCTTACAAACAT 58.166 50.000 0.00 0.00 0.00 2.71
764 765 3.332706 CCTTCGGGGCTTACAAACA 57.667 52.632 0.00 0.00 0.00 2.83
774 775 3.708544 TACGTTGGGCCTTCGGGG 61.709 66.667 20.46 1.93 35.16 5.73
775 776 2.435410 GTACGTTGGGCCTTCGGG 60.435 66.667 20.46 3.18 38.37 5.14
776 777 2.812178 CGTACGTTGGGCCTTCGG 60.812 66.667 20.46 4.75 0.00 4.30
777 778 2.090524 GTCGTACGTTGGGCCTTCG 61.091 63.158 16.05 16.47 0.00 3.79
778 779 1.739196 GGTCGTACGTTGGGCCTTC 60.739 63.158 16.05 0.00 0.00 3.46
779 780 2.344872 GGTCGTACGTTGGGCCTT 59.655 61.111 16.05 0.00 0.00 4.35
780 781 3.698820 GGGTCGTACGTTGGGCCT 61.699 66.667 16.05 0.00 0.00 5.19
782 783 4.362476 ACGGGTCGTACGTTGGGC 62.362 66.667 16.05 1.98 42.70 5.36
793 794 1.833787 TTGGGCTAGGACAACGGGTC 61.834 60.000 1.24 1.24 46.20 4.46
794 795 1.420532 TTTGGGCTAGGACAACGGGT 61.421 55.000 0.00 0.00 0.00 5.28
795 796 0.676782 CTTTGGGCTAGGACAACGGG 60.677 60.000 0.00 0.00 0.00 5.28
796 797 0.676782 CCTTTGGGCTAGGACAACGG 60.677 60.000 0.00 0.00 34.56 4.44
797 798 2.854522 CCTTTGGGCTAGGACAACG 58.145 57.895 0.00 0.00 34.56 4.10
808 809 2.716217 CTTTCTAGGACTGCCTTTGGG 58.284 52.381 0.00 0.00 43.90 4.12
809 810 2.087646 GCTTTCTAGGACTGCCTTTGG 58.912 52.381 0.00 0.00 43.90 3.28
810 811 2.783135 TGCTTTCTAGGACTGCCTTTG 58.217 47.619 0.00 0.00 43.90 2.77
811 812 3.508845 TTGCTTTCTAGGACTGCCTTT 57.491 42.857 0.00 0.00 43.90 3.11
812 813 3.728385 ATTGCTTTCTAGGACTGCCTT 57.272 42.857 0.00 0.00 43.90 4.35
814 815 2.352960 CGAATTGCTTTCTAGGACTGCC 59.647 50.000 0.00 0.00 31.73 4.85
815 816 2.223135 GCGAATTGCTTTCTAGGACTGC 60.223 50.000 0.00 0.00 41.73 4.40
816 817 3.665173 GCGAATTGCTTTCTAGGACTG 57.335 47.619 0.00 0.00 41.73 3.51
828 829 3.577313 GGCCGAGGAGCGAATTGC 61.577 66.667 0.00 0.00 44.57 3.56
829 830 3.264897 CGGCCGAGGAGCGAATTG 61.265 66.667 24.07 0.00 44.57 2.32
830 831 4.530857 CCGGCCGAGGAGCGAATT 62.531 66.667 30.73 0.00 44.57 2.17
866 867 1.463674 CTTGTGTGTGGATAAGGGGC 58.536 55.000 0.00 0.00 0.00 5.80
867 868 1.463674 GCTTGTGTGTGGATAAGGGG 58.536 55.000 0.00 0.00 0.00 4.79
883 884 4.719369 GACAGGACCGTCGCGCTT 62.719 66.667 5.56 0.00 0.00 4.68
886 887 4.477975 GGAGACAGGACCGTCGCG 62.478 72.222 0.00 0.00 40.98 5.87
887 888 3.063084 AGGAGACAGGACCGTCGC 61.063 66.667 10.24 10.24 40.98 5.19
888 889 1.972223 ACAGGAGACAGGACCGTCG 60.972 63.158 9.74 0.00 40.98 5.12
889 890 1.587054 CACAGGAGACAGGACCGTC 59.413 63.158 8.01 8.01 36.08 4.79
890 891 1.908793 CCACAGGAGACAGGACCGT 60.909 63.158 0.00 0.00 0.00 4.83
891 892 2.973899 CCACAGGAGACAGGACCG 59.026 66.667 0.00 0.00 0.00 4.79
892 893 1.893919 GAGCCACAGGAGACAGGACC 61.894 65.000 0.00 0.00 0.00 4.46
894 895 1.610673 GGAGCCACAGGAGACAGGA 60.611 63.158 0.00 0.00 0.00 3.86
896 897 2.985456 GGGAGCCACAGGAGACAG 59.015 66.667 0.00 0.00 0.00 3.51
897 898 2.997315 CGGGAGCCACAGGAGACA 60.997 66.667 0.00 0.00 0.00 3.41
898 899 3.775654 CCGGGAGCCACAGGAGAC 61.776 72.222 0.00 0.00 0.00 3.36
941 947 1.452108 CTTCTGGTTCCCGATGGCC 60.452 63.158 0.00 0.00 0.00 5.36
949 955 1.202545 GGGTAGCGATCTTCTGGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
980 986 1.070758 TGCTCTGGTGGTCTCTGTTTC 59.929 52.381 0.00 0.00 0.00 2.78
985 991 2.294890 CCATGCTCTGGTGGTCTCT 58.705 57.895 0.00 0.00 40.49 3.10
1469 1489 1.809207 CACGAATGGGATGGCCAAC 59.191 57.895 10.96 7.12 35.15 3.77
1542 1881 6.433404 AGCAGAATCAGATGAACATGAAAACT 59.567 34.615 0.00 0.00 0.00 2.66
1575 1919 6.843069 TGAAGCTGGTTTCTAAATTTTTGC 57.157 33.333 0.00 0.00 0.00 3.68
1601 1945 6.092748 GCTACTATGCTAGAGAATTCTGCTC 58.907 44.000 14.00 0.00 34.79 4.26
1620 1964 0.539051 AGCCAGCATTTCTCGCTACT 59.461 50.000 0.00 0.00 37.49 2.57
1850 2220 3.159472 TCTGGCTGCTGTTGAATTTGAT 58.841 40.909 0.00 0.00 0.00 2.57
1917 2292 2.148916 TGGAAGAGCAAGTGTGTACG 57.851 50.000 0.00 0.00 0.00 3.67
1990 2371 7.717875 AGCTTACAAAGAGATAGAGAGTACGAT 59.282 37.037 0.00 0.00 0.00 3.73
2002 2383 9.026121 TGTTCTCTAGTAAGCTTACAAAGAGAT 57.974 33.333 38.94 24.15 44.86 2.75
2012 2394 4.080687 AGACGGTGTTCTCTAGTAAGCTT 58.919 43.478 3.48 3.48 0.00 3.74
2099 2484 5.063817 GCAAAGATGTTGCAAAGAAGTTGTT 59.936 36.000 0.00 0.00 44.34 2.83
2113 2498 6.710295 TGTTGACTACATGTAGCAAAGATGTT 59.290 34.615 28.50 12.99 38.91 2.71
2118 2504 6.785488 TTCTGTTGACTACATGTAGCAAAG 57.215 37.500 28.50 25.65 35.85 2.77
2119 2505 7.561021 TTTTCTGTTGACTACATGTAGCAAA 57.439 32.000 28.50 22.04 35.85 3.68
2120 2506 7.066404 TGTTTTTCTGTTGACTACATGTAGCAA 59.934 33.333 28.88 26.96 35.85 3.91
2121 2507 6.540551 TGTTTTTCTGTTGACTACATGTAGCA 59.459 34.615 28.88 23.66 35.85 3.49
2122 2508 6.954944 TGTTTTTCTGTTGACTACATGTAGC 58.045 36.000 28.88 21.71 35.85 3.58
2125 2511 9.950680 CTTAATGTTTTTCTGTTGACTACATGT 57.049 29.630 2.69 2.69 35.85 3.21
2126 2512 9.398170 CCTTAATGTTTTTCTGTTGACTACATG 57.602 33.333 0.00 0.00 35.85 3.21
2127 2513 8.082242 GCCTTAATGTTTTTCTGTTGACTACAT 58.918 33.333 0.00 0.00 35.85 2.29
2128 2514 7.067615 TGCCTTAATGTTTTTCTGTTGACTACA 59.932 33.333 0.00 0.00 34.95 2.74
2129 2515 7.378728 GTGCCTTAATGTTTTTCTGTTGACTAC 59.621 37.037 0.00 0.00 0.00 2.73
2143 2529 3.190535 GGATGACAACGTGCCTTAATGTT 59.809 43.478 0.00 0.00 0.00 2.71
2189 2591 5.534207 AGGTGAAGATGCAAAACATTCAA 57.466 34.783 0.00 0.00 39.84 2.69
2391 2797 1.880894 GGCTAAAAACCTGGCGGAC 59.119 57.895 0.00 0.00 0.00 4.79
2436 2842 2.665519 CGGGAAATTGAGCAACTTCGTG 60.666 50.000 0.00 0.00 28.20 4.35
2440 2846 2.554032 CTGTCGGGAAATTGAGCAACTT 59.446 45.455 0.00 0.00 0.00 2.66
2514 2920 8.955061 AATCAACAAATATCGTCAAAGTGAAG 57.045 30.769 0.00 0.00 0.00 3.02
2538 2944 8.717821 CCGACTACTCTTATGAATTGTGAAAAA 58.282 33.333 0.00 0.00 0.00 1.94
2541 2947 5.810587 GCCGACTACTCTTATGAATTGTGAA 59.189 40.000 0.00 0.00 0.00 3.18
2557 2963 1.623973 GAACAAGCGGTGCCGACTAC 61.624 60.000 15.45 0.00 42.83 2.73
2570 2976 0.868406 GACTTGCCTGGTCGAACAAG 59.132 55.000 3.93 0.00 43.99 3.16
2577 2983 1.003580 TCTTCATGGACTTGCCTGGTC 59.996 52.381 0.00 0.00 37.63 4.02
2593 3001 3.557595 CAGACTGGTTGTGTGAACTCTTC 59.442 47.826 0.00 0.00 41.88 2.87
2645 3057 2.942804 TGAGGTCAACCATTGAAGCAA 58.057 42.857 1.33 0.00 42.15 3.91
2676 3088 4.032900 GTGTCATGAAGGTATTGTACGCAG 59.967 45.833 0.00 0.00 0.00 5.18
2680 3092 4.328983 CGTGGTGTCATGAAGGTATTGTAC 59.671 45.833 0.00 0.00 31.73 2.90
2743 3155 8.986477 AACTAGATTTTTAATGTTGATGTGCC 57.014 30.769 0.00 0.00 0.00 5.01
2769 3181 8.642885 GCTGTACTCAAATGATATAGTGATTCG 58.357 37.037 0.00 0.00 0.00 3.34
2786 3198 1.866015 AGGGCATACTGCTGTACTCA 58.134 50.000 5.50 0.00 44.28 3.41
2798 3210 9.515226 GTTATGGAATTCACTATTAAGGGCATA 57.485 33.333 7.93 0.00 0.00 3.14
2845 3257 1.024271 GCACTTGACAAGGTCTTGCA 58.976 50.000 19.16 7.07 44.03 4.08
2856 3268 1.734707 GCTCATTGGCATGCACTTGAC 60.735 52.381 21.36 9.21 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.