Multiple sequence alignment - TraesCS2D01G385200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G385200 chr2D 100.000 2673 0 0 1 2673 489666264 489668936 0.000000e+00 4937.0
1 TraesCS2D01G385200 chr2D 79.703 404 60 16 1995 2381 78707868 78708266 3.390000e-69 272.0
2 TraesCS2D01G385200 chr2D 83.835 266 39 2 2405 2669 419360219 419359957 1.590000e-62 250.0
3 TraesCS2D01G385200 chr2D 83.209 268 41 2 2405 2671 419358599 419358335 2.660000e-60 243.0
4 TraesCS2D01G385200 chr2D 80.317 315 56 3 2077 2389 570103078 570103388 1.600000e-57 233.0
5 TraesCS2D01G385200 chr2D 77.239 268 44 11 2080 2333 88404490 88404226 9.980000e-30 141.0
6 TraesCS2D01G385200 chr2D 76.557 273 38 17 2076 2329 96688437 96688702 2.790000e-25 126.0
7 TraesCS2D01G385200 chr2A 90.360 1027 58 23 678 1686 633482970 633483973 0.000000e+00 1310.0
8 TraesCS2D01G385200 chr2A 86.957 92 11 1 591 682 633482856 633482946 4.710000e-18 102.0
9 TraesCS2D01G385200 chr2B 90.992 655 24 9 593 1214 573668645 573669297 0.000000e+00 850.0
10 TraesCS2D01G385200 chr2B 94.926 473 21 3 1219 1688 573669462 573669934 0.000000e+00 737.0
11 TraesCS2D01G385200 chr2B 86.477 599 66 8 1 590 45649495 45648903 0.000000e+00 643.0
12 TraesCS2D01G385200 chr2B 80.769 130 16 5 1974 2102 644545322 644545201 2.830000e-15 93.5
13 TraesCS2D01G385200 chr3D 88.721 594 60 7 1 590 608781677 608782267 0.000000e+00 719.0
14 TraesCS2D01G385200 chr3D 85.497 593 77 6 3 590 582157873 582158461 6.330000e-171 610.0
15 TraesCS2D01G385200 chr3D 82.799 343 41 15 2076 2404 550250697 550250359 9.360000e-75 291.0
16 TraesCS2D01G385200 chr3D 81.731 104 16 3 1972 2075 569512956 569513056 1.710000e-12 84.2
17 TraesCS2D01G385200 chr7D 86.851 578 70 6 15 590 82352344 82351771 2.240000e-180 641.0
18 TraesCS2D01G385200 chr7D 86.172 593 78 4 1 590 455356806 455357397 2.900000e-179 638.0
19 TraesCS2D01G385200 chr7D 87.342 79 6 3 1691 1765 401715566 401715644 1.320000e-13 87.9
20 TraesCS2D01G385200 chr5D 86.532 594 67 8 1 590 118053453 118054037 2.240000e-180 641.0
21 TraesCS2D01G385200 chr5D 83.962 106 13 4 2068 2171 560439744 560439847 6.090000e-17 99.0
22 TraesCS2D01G385200 chr6B 85.690 594 63 12 1 590 457223455 457222880 8.180000e-170 606.0
23 TraesCS2D01G385200 chr7A 84.804 612 71 4 1 590 10629276 10629887 1.770000e-166 595.0
24 TraesCS2D01G385200 chr7A 79.204 452 48 17 1983 2389 252192298 252191848 3.390000e-69 272.0
25 TraesCS2D01G385200 chr4D 85.152 559 74 8 1 555 82904182 82903629 5.000000e-157 564.0
26 TraesCS2D01G385200 chr4D 85.081 248 35 2 2163 2409 324201404 324201158 4.420000e-63 252.0
27 TraesCS2D01G385200 chr4D 80.714 140 22 5 1916 2052 8013762 8013625 1.310000e-18 104.0
28 TraesCS2D01G385200 chr4D 83.178 107 17 1 1972 2078 399529686 399529791 2.190000e-16 97.1
29 TraesCS2D01G385200 chr1D 80.537 596 107 8 1 591 364070582 364069991 1.460000e-122 449.0
30 TraesCS2D01G385200 chr1D 83.846 260 36 2 2414 2673 345408852 345408599 2.660000e-60 243.0
31 TraesCS2D01G385200 chr1D 74.000 450 71 27 1919 2329 374359584 374360026 9.980000e-30 141.0
32 TraesCS2D01G385200 chr3B 82.899 345 42 10 2076 2406 275336113 275336454 7.240000e-76 294.0
33 TraesCS2D01G385200 chr3B 86.000 250 34 1 2421 2670 708171649 708171897 1.580000e-67 267.0
34 TraesCS2D01G385200 chr3B 83.278 299 32 9 2104 2389 244686291 244685998 2.640000e-65 259.0
35 TraesCS2D01G385200 chr3B 75.610 164 33 7 1917 2077 159475520 159475679 1.030000e-09 75.0
36 TraesCS2D01G385200 chr5B 86.973 261 33 1 2412 2671 82467087 82466827 2.600000e-75 292.0
37 TraesCS2D01G385200 chr6A 80.402 398 58 13 2025 2409 604591886 604592276 4.360000e-73 285.0
38 TraesCS2D01G385200 chr4A 77.714 525 69 28 1910 2389 566901447 566901968 7.290000e-71 278.0
39 TraesCS2D01G385200 chr4A 85.185 270 39 1 2405 2673 595823076 595823345 2.620000e-70 276.0
40 TraesCS2D01G385200 chr4A 78.070 342 63 9 2072 2405 104384969 104384632 3.490000e-49 206.0
41 TraesCS2D01G385200 chr4A 79.012 162 32 2 1919 2079 693165468 693165628 2.810000e-20 110.0
42 TraesCS2D01G385200 chr1B 84.677 248 38 0 2426 2673 686872408 686872161 5.710000e-62 248.0
43 TraesCS2D01G385200 chr1A 83.333 264 42 1 2408 2671 574501319 574501058 2.660000e-60 243.0
44 TraesCS2D01G385200 chr7B 82.463 268 43 2 2405 2671 120724682 120724946 5.750000e-57 231.0
45 TraesCS2D01G385200 chr7B 79.503 161 29 4 1917 2075 643029666 643029824 7.820000e-21 111.0
46 TraesCS2D01G385200 chr7B 77.857 140 28 3 2094 2231 161903226 161903088 1.710000e-12 84.2
47 TraesCS2D01G385200 chr3A 78.646 192 24 13 2077 2254 498260455 498260267 7.820000e-21 111.0
48 TraesCS2D01G385200 chr3A 85.000 80 11 1 2087 2165 692526814 692526735 2.210000e-11 80.5
49 TraesCS2D01G385200 chr4B 84.158 101 16 0 1976 2076 661883504 661883404 6.090000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G385200 chr2D 489666264 489668936 2672 False 4937.0 4937 100.0000 1 2673 1 chr2D.!!$F3 2672
1 TraesCS2D01G385200 chr2D 419358335 419360219 1884 True 246.5 250 83.5220 2405 2671 2 chr2D.!!$R2 266
2 TraesCS2D01G385200 chr2A 633482856 633483973 1117 False 706.0 1310 88.6585 591 1686 2 chr2A.!!$F1 1095
3 TraesCS2D01G385200 chr2B 573668645 573669934 1289 False 793.5 850 92.9590 593 1688 2 chr2B.!!$F1 1095
4 TraesCS2D01G385200 chr2B 45648903 45649495 592 True 643.0 643 86.4770 1 590 1 chr2B.!!$R1 589
5 TraesCS2D01G385200 chr3D 608781677 608782267 590 False 719.0 719 88.7210 1 590 1 chr3D.!!$F3 589
6 TraesCS2D01G385200 chr3D 582157873 582158461 588 False 610.0 610 85.4970 3 590 1 chr3D.!!$F2 587
7 TraesCS2D01G385200 chr7D 82351771 82352344 573 True 641.0 641 86.8510 15 590 1 chr7D.!!$R1 575
8 TraesCS2D01G385200 chr7D 455356806 455357397 591 False 638.0 638 86.1720 1 590 1 chr7D.!!$F2 589
9 TraesCS2D01G385200 chr5D 118053453 118054037 584 False 641.0 641 86.5320 1 590 1 chr5D.!!$F1 589
10 TraesCS2D01G385200 chr6B 457222880 457223455 575 True 606.0 606 85.6900 1 590 1 chr6B.!!$R1 589
11 TraesCS2D01G385200 chr7A 10629276 10629887 611 False 595.0 595 84.8040 1 590 1 chr7A.!!$F1 589
12 TraesCS2D01G385200 chr4D 82903629 82904182 553 True 564.0 564 85.1520 1 555 1 chr4D.!!$R2 554
13 TraesCS2D01G385200 chr1D 364069991 364070582 591 True 449.0 449 80.5370 1 591 1 chr1D.!!$R2 590
14 TraesCS2D01G385200 chr4A 566901447 566901968 521 False 278.0 278 77.7140 1910 2389 1 chr4A.!!$F1 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 978 1.477295 TGTATGCGTGTACATCCCGAA 59.523 47.619 8.39 0.0 30.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2429 0.036306 AGTGGCTAAGGTTTGGTCCG 59.964 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 159 8.397906 CGCATACCCATGTATCCTTATAAAATG 58.602 37.037 0.00 0.00 35.46 2.32
200 207 9.520515 ACCTCTATATTTTGTCATGAGTTTGTT 57.479 29.630 0.00 0.00 0.00 2.83
356 420 7.984391 TGTATTGATGTCATTATGTGTTGTCC 58.016 34.615 0.00 0.00 0.00 4.02
396 464 9.710979 ATTGTATGTTGTTGTACGTAATAATGC 57.289 29.630 0.00 0.00 0.00 3.56
420 488 7.644945 TGCGATGCTCAAATTAATGTTATTCAG 59.355 33.333 0.00 0.00 0.00 3.02
448 518 3.809279 GGTATTTTTATCCGTGGTACCCG 59.191 47.826 10.07 12.38 0.00 5.28
459 529 1.899142 GTGGTACCCGTTTACCCTGTA 59.101 52.381 10.07 0.00 40.96 2.74
508 579 3.236896 CCCACTAACGGGTATGGATACT 58.763 50.000 3.90 0.00 41.83 2.12
509 580 3.644738 CCCACTAACGGGTATGGATACTT 59.355 47.826 3.90 0.00 41.83 2.24
531 602 4.991776 TGTGATGGGTAAGTTCAAATGGA 58.008 39.130 0.00 0.00 0.00 3.41
536 607 5.004361 TGGGTAAGTTCAAATGGAATGGA 57.996 39.130 0.00 0.00 37.93 3.41
542 613 8.749354 GGTAAGTTCAAATGGAATGGATAAAGT 58.251 33.333 0.00 0.00 37.93 2.66
549 620 8.064389 TCAAATGGAATGGATAAAGTTATGGGA 58.936 33.333 0.00 0.00 0.00 4.37
563 634 4.226846 AGTTATGGGATAGCTCCATCCATG 59.773 45.833 15.87 0.00 45.52 3.66
564 635 2.123018 TGGGATAGCTCCATCCATGT 57.877 50.000 15.87 0.00 45.52 3.21
565 636 2.421725 TGGGATAGCTCCATCCATGTT 58.578 47.619 15.87 0.00 45.52 2.71
568 639 3.009916 GGGATAGCTCCATCCATGTTCAT 59.990 47.826 15.87 0.00 45.52 2.57
605 676 5.309543 CCATCCCTATTTGTGGGTGAGTATA 59.690 44.000 0.00 0.00 44.84 1.47
606 677 6.012508 CCATCCCTATTTGTGGGTGAGTATAT 60.013 42.308 0.00 0.00 44.84 0.86
618 689 4.691216 GGGTGAGTATATGAAAATCCGCTC 59.309 45.833 0.00 0.00 0.00 5.03
770 872 2.495669 GGAGATTGAGATCGATCCCTCC 59.504 54.545 21.66 21.61 37.45 4.30
850 962 7.116376 CGTTAAGACACACACTTTCTCATGTAT 59.884 37.037 0.00 0.00 0.00 2.29
866 978 1.477295 TGTATGCGTGTACATCCCGAA 59.523 47.619 8.39 0.00 30.00 4.30
903 1021 9.073368 GCATGTACTATGTGTATAAATACGGAG 57.927 37.037 0.00 0.00 36.06 4.63
904 1022 9.073368 CATGTACTATGTGTATAAATACGGAGC 57.927 37.037 0.00 0.00 36.06 4.70
908 1026 7.027760 ACTATGTGTATAAATACGGAGCGATG 58.972 38.462 0.00 0.00 36.06 3.84
909 1027 5.441709 TGTGTATAAATACGGAGCGATGA 57.558 39.130 0.00 0.00 36.06 2.92
913 1032 6.752351 GTGTATAAATACGGAGCGATGATCAT 59.248 38.462 8.25 8.25 36.06 2.45
957 1076 4.263677 CCGCAATCGAATTCACTGAAATTG 59.736 41.667 6.22 8.61 38.10 2.32
983 1103 6.899089 TCATCAGTACACCATCCAAATACAT 58.101 36.000 0.00 0.00 0.00 2.29
1215 1335 2.807895 GCTTCTTGCCGCGTCGTA 60.808 61.111 4.92 0.00 35.15 3.43
1216 1336 3.067846 GCTTCTTGCCGCGTCGTAC 62.068 63.158 4.92 0.00 35.15 3.67
1222 1502 2.276430 GCCGCGTCGTACAAATGC 60.276 61.111 4.92 0.00 0.00 3.56
1282 1565 0.183492 AGACGGCATGGGCATACATT 59.817 50.000 0.00 0.00 43.71 2.71
1386 1669 1.078918 TGCAGATCAAGCACGGAGG 60.079 57.895 8.58 0.00 37.02 4.30
1393 1676 1.672356 CAAGCACGGAGGGAGTTGG 60.672 63.158 0.00 0.00 0.00 3.77
1394 1677 2.147387 AAGCACGGAGGGAGTTGGT 61.147 57.895 0.00 0.00 0.00 3.67
1432 1715 2.118313 TAATCTCTGACCCGTCGTGA 57.882 50.000 0.00 0.00 0.00 4.35
1451 1734 0.539438 AGCGGTTTGGAAATGGCAGA 60.539 50.000 0.00 0.00 0.00 4.26
1455 1738 1.620323 GGTTTGGAAATGGCAGAGCTT 59.380 47.619 0.00 0.00 0.00 3.74
1679 1962 1.402259 ACGTGCATCTCTAGTTCTCGG 59.598 52.381 0.00 0.00 0.00 4.63
1688 1971 3.710677 TCTCTAGTTCTCGGGCTAGTAGT 59.289 47.826 0.00 0.00 36.84 2.73
1689 1972 4.898265 TCTCTAGTTCTCGGGCTAGTAGTA 59.102 45.833 0.00 0.00 36.84 1.82
1690 1973 5.543405 TCTCTAGTTCTCGGGCTAGTAGTAT 59.457 44.000 0.00 0.00 36.84 2.12
1691 1974 6.723515 TCTCTAGTTCTCGGGCTAGTAGTATA 59.276 42.308 0.00 0.00 36.84 1.47
1692 1975 6.696411 TCTAGTTCTCGGGCTAGTAGTATAC 58.304 44.000 0.00 0.00 43.47 1.47
1703 1986 2.695613 GTAGTATACTCCCGCCGTTC 57.304 55.000 9.12 0.00 38.91 3.95
1704 1987 1.268079 GTAGTATACTCCCGCCGTTCC 59.732 57.143 9.12 0.00 38.91 3.62
1705 1988 0.396139 AGTATACTCCCGCCGTTCCA 60.396 55.000 0.00 0.00 0.00 3.53
1706 1989 0.677842 GTATACTCCCGCCGTTCCAT 59.322 55.000 0.00 0.00 0.00 3.41
1707 1990 1.888512 GTATACTCCCGCCGTTCCATA 59.111 52.381 0.00 0.00 0.00 2.74
1708 1991 1.640917 ATACTCCCGCCGTTCCATAT 58.359 50.000 0.00 0.00 0.00 1.78
1709 1992 1.416243 TACTCCCGCCGTTCCATATT 58.584 50.000 0.00 0.00 0.00 1.28
1710 1993 1.416243 ACTCCCGCCGTTCCATATTA 58.584 50.000 0.00 0.00 0.00 0.98
1711 1994 1.069668 ACTCCCGCCGTTCCATATTAC 59.930 52.381 0.00 0.00 0.00 1.89
1712 1995 1.343465 CTCCCGCCGTTCCATATTACT 59.657 52.381 0.00 0.00 0.00 2.24
1713 1996 1.342174 TCCCGCCGTTCCATATTACTC 59.658 52.381 0.00 0.00 0.00 2.59
1714 1997 1.415374 CCGCCGTTCCATATTACTCG 58.585 55.000 0.00 0.00 0.00 4.18
1715 1998 1.269413 CCGCCGTTCCATATTACTCGT 60.269 52.381 0.00 0.00 0.00 4.18
1716 1999 2.049228 CGCCGTTCCATATTACTCGTC 58.951 52.381 0.00 0.00 0.00 4.20
1717 2000 2.401351 GCCGTTCCATATTACTCGTCC 58.599 52.381 0.00 0.00 0.00 4.79
1718 2001 2.865276 GCCGTTCCATATTACTCGTCCC 60.865 54.545 0.00 0.00 0.00 4.46
1719 2002 2.626743 CCGTTCCATATTACTCGTCCCT 59.373 50.000 0.00 0.00 0.00 4.20
1720 2003 3.822735 CCGTTCCATATTACTCGTCCCTA 59.177 47.826 0.00 0.00 0.00 3.53
1721 2004 4.279169 CCGTTCCATATTACTCGTCCCTAA 59.721 45.833 0.00 0.00 0.00 2.69
1722 2005 5.221303 CCGTTCCATATTACTCGTCCCTAAA 60.221 44.000 0.00 0.00 0.00 1.85
1723 2006 6.453092 CGTTCCATATTACTCGTCCCTAAAT 58.547 40.000 0.00 0.00 0.00 1.40
1724 2007 6.927381 CGTTCCATATTACTCGTCCCTAAATT 59.073 38.462 0.00 0.00 0.00 1.82
1725 2008 8.084073 CGTTCCATATTACTCGTCCCTAAATTA 58.916 37.037 0.00 0.00 0.00 1.40
1726 2009 9.939802 GTTCCATATTACTCGTCCCTAAATTAT 57.060 33.333 0.00 0.00 0.00 1.28
1738 2021 9.467258 TCGTCCCTAAATTATACTAAATCAACG 57.533 33.333 0.00 0.00 0.00 4.10
1739 2022 9.467258 CGTCCCTAAATTATACTAAATCAACGA 57.533 33.333 0.00 0.00 0.00 3.85
1756 2039 9.763465 AAATCAACGACAAGTAATATAAAACGG 57.237 29.630 0.00 0.00 0.00 4.44
1757 2040 8.706492 ATCAACGACAAGTAATATAAAACGGA 57.294 30.769 0.00 0.00 0.00 4.69
1758 2041 8.176814 TCAACGACAAGTAATATAAAACGGAG 57.823 34.615 0.00 0.00 0.00 4.63
1759 2042 7.276218 TCAACGACAAGTAATATAAAACGGAGG 59.724 37.037 0.00 0.00 0.00 4.30
1760 2043 6.044682 ACGACAAGTAATATAAAACGGAGGG 58.955 40.000 0.00 0.00 0.00 4.30
1761 2044 6.127366 ACGACAAGTAATATAAAACGGAGGGA 60.127 38.462 0.00 0.00 0.00 4.20
1762 2045 6.420008 CGACAAGTAATATAAAACGGAGGGAG 59.580 42.308 0.00 0.00 0.00 4.30
1763 2046 7.191593 ACAAGTAATATAAAACGGAGGGAGT 57.808 36.000 0.00 0.00 0.00 3.85
1764 2047 8.310122 ACAAGTAATATAAAACGGAGGGAGTA 57.690 34.615 0.00 0.00 0.00 2.59
1765 2048 8.931568 ACAAGTAATATAAAACGGAGGGAGTAT 58.068 33.333 0.00 0.00 0.00 2.12
1766 2049 9.774413 CAAGTAATATAAAACGGAGGGAGTATT 57.226 33.333 0.00 0.00 0.00 1.89
1768 2051 9.993454 AGTAATATAAAACGGAGGGAGTATTTC 57.007 33.333 0.00 0.00 0.00 2.17
1769 2052 9.212641 GTAATATAAAACGGAGGGAGTATTTCC 57.787 37.037 0.00 0.00 46.00 3.13
1770 2053 5.970501 ATAAAACGGAGGGAGTATTTCCT 57.029 39.130 0.00 0.00 45.98 3.36
1771 2054 8.731591 ATATAAAACGGAGGGAGTATTTCCTA 57.268 34.615 0.00 0.00 45.98 2.94
1772 2055 5.767277 AAAACGGAGGGAGTATTTCCTAA 57.233 39.130 0.00 0.00 45.98 2.69
1773 2056 5.354842 AAACGGAGGGAGTATTTCCTAAG 57.645 43.478 0.00 0.00 45.98 2.18
1774 2057 3.306613 ACGGAGGGAGTATTTCCTAAGG 58.693 50.000 0.00 0.00 45.98 2.69
1775 2058 3.052338 ACGGAGGGAGTATTTCCTAAGGA 60.052 47.826 0.00 0.00 45.98 3.36
1776 2059 4.161102 CGGAGGGAGTATTTCCTAAGGAT 58.839 47.826 0.00 0.00 45.98 3.24
1777 2060 5.162903 ACGGAGGGAGTATTTCCTAAGGATA 60.163 44.000 0.00 0.00 45.98 2.59
1778 2061 5.778750 CGGAGGGAGTATTTCCTAAGGATAA 59.221 44.000 0.00 0.00 45.98 1.75
1779 2062 6.440965 CGGAGGGAGTATTTCCTAAGGATAAT 59.559 42.308 0.00 0.00 45.98 1.28
1780 2063 7.363968 CGGAGGGAGTATTTCCTAAGGATAATC 60.364 44.444 0.00 0.00 45.98 1.75
1781 2064 7.680739 GGAGGGAGTATTTCCTAAGGATAATCT 59.319 40.741 0.00 0.00 45.98 2.40
1782 2065 9.106977 GAGGGAGTATTTCCTAAGGATAATCTT 57.893 37.037 0.00 0.00 45.98 2.40
1783 2066 9.467030 AGGGAGTATTTCCTAAGGATAATCTTT 57.533 33.333 0.00 0.00 45.98 2.52
1784 2067 9.727859 GGGAGTATTTCCTAAGGATAATCTTTC 57.272 37.037 0.00 0.00 45.98 2.62
1847 2130 9.859427 ATTTGATTCATTTCAATTGTATGACGT 57.141 25.926 18.87 13.44 35.64 4.34
1853 2136 8.655651 TCATTTCAATTGTATGACGTATAGCA 57.344 30.769 16.63 0.00 0.00 3.49
1854 2137 9.103861 TCATTTCAATTGTATGACGTATAGCAA 57.896 29.630 16.63 0.00 0.00 3.91
1855 2138 9.715123 CATTTCAATTGTATGACGTATAGCAAA 57.285 29.630 14.23 1.07 0.00 3.68
1856 2139 9.935682 ATTTCAATTGTATGACGTATAGCAAAG 57.064 29.630 5.13 0.00 0.00 2.77
1857 2140 8.710835 TTCAATTGTATGACGTATAGCAAAGA 57.289 30.769 5.13 0.00 0.00 2.52
1858 2141 8.710835 TCAATTGTATGACGTATAGCAAAGAA 57.289 30.769 5.13 0.00 0.00 2.52
1859 2142 9.157104 TCAATTGTATGACGTATAGCAAAGAAA 57.843 29.630 5.13 0.00 0.00 2.52
1860 2143 9.767684 CAATTGTATGACGTATAGCAAAGAAAA 57.232 29.630 0.00 0.00 0.00 2.29
1862 2145 9.935682 ATTGTATGACGTATAGCAAAGAAAATG 57.064 29.630 0.00 0.00 0.00 2.32
1863 2146 8.710835 TGTATGACGTATAGCAAAGAAAATGA 57.289 30.769 0.00 0.00 0.00 2.57
1864 2147 8.817100 TGTATGACGTATAGCAAAGAAAATGAG 58.183 33.333 0.00 0.00 0.00 2.90
1865 2148 9.031360 GTATGACGTATAGCAAAGAAAATGAGA 57.969 33.333 0.00 0.00 0.00 3.27
1866 2149 7.899178 TGACGTATAGCAAAGAAAATGAGAA 57.101 32.000 0.00 0.00 0.00 2.87
1867 2150 8.492673 TGACGTATAGCAAAGAAAATGAGAAT 57.507 30.769 0.00 0.00 0.00 2.40
1868 2151 8.390354 TGACGTATAGCAAAGAAAATGAGAATG 58.610 33.333 0.00 0.00 0.00 2.67
1869 2152 8.268850 ACGTATAGCAAAGAAAATGAGAATGT 57.731 30.769 0.00 0.00 0.00 2.71
1870 2153 9.378551 ACGTATAGCAAAGAAAATGAGAATGTA 57.621 29.630 0.00 0.00 0.00 2.29
1871 2154 9.638300 CGTATAGCAAAGAAAATGAGAATGTAC 57.362 33.333 0.00 0.00 0.00 2.90
1872 2155 9.638300 GTATAGCAAAGAAAATGAGAATGTACG 57.362 33.333 0.00 0.00 0.00 3.67
1873 2156 6.560253 AGCAAAGAAAATGAGAATGTACGT 57.440 33.333 0.00 0.00 0.00 3.57
1874 2157 6.373779 AGCAAAGAAAATGAGAATGTACGTG 58.626 36.000 0.00 0.00 0.00 4.49
1875 2158 6.204688 AGCAAAGAAAATGAGAATGTACGTGA 59.795 34.615 0.00 0.00 0.00 4.35
1876 2159 7.023575 GCAAAGAAAATGAGAATGTACGTGAT 58.976 34.615 0.00 0.00 0.00 3.06
1877 2160 8.175069 GCAAAGAAAATGAGAATGTACGTGATA 58.825 33.333 0.00 0.00 0.00 2.15
1880 2163 8.197988 AGAAAATGAGAATGTACGTGATAACC 57.802 34.615 0.00 0.00 0.00 2.85
1881 2164 6.920569 AAATGAGAATGTACGTGATAACCC 57.079 37.500 0.00 0.00 0.00 4.11
1882 2165 5.871396 ATGAGAATGTACGTGATAACCCT 57.129 39.130 0.00 0.00 0.00 4.34
1883 2166 5.006153 TGAGAATGTACGTGATAACCCTG 57.994 43.478 0.00 0.00 0.00 4.45
1884 2167 4.707934 TGAGAATGTACGTGATAACCCTGA 59.292 41.667 0.00 0.00 0.00 3.86
1885 2168 5.362717 TGAGAATGTACGTGATAACCCTGAT 59.637 40.000 0.00 0.00 0.00 2.90
1886 2169 6.127168 TGAGAATGTACGTGATAACCCTGATT 60.127 38.462 0.00 0.00 0.00 2.57
1887 2170 6.650120 AGAATGTACGTGATAACCCTGATTT 58.350 36.000 0.00 0.00 0.00 2.17
1888 2171 6.538742 AGAATGTACGTGATAACCCTGATTTG 59.461 38.462 0.00 0.00 0.00 2.32
1889 2172 3.936453 TGTACGTGATAACCCTGATTTGC 59.064 43.478 0.00 0.00 0.00 3.68
1890 2173 3.066291 ACGTGATAACCCTGATTTGCA 57.934 42.857 0.00 0.00 0.00 4.08
1891 2174 2.747446 ACGTGATAACCCTGATTTGCAC 59.253 45.455 0.00 0.00 0.00 4.57
1892 2175 2.746904 CGTGATAACCCTGATTTGCACA 59.253 45.455 0.00 0.00 0.00 4.57
1893 2176 3.378112 CGTGATAACCCTGATTTGCACAT 59.622 43.478 0.00 0.00 0.00 3.21
1894 2177 4.142403 CGTGATAACCCTGATTTGCACATT 60.142 41.667 0.00 0.00 0.00 2.71
1895 2178 5.065859 CGTGATAACCCTGATTTGCACATTA 59.934 40.000 0.00 0.00 0.00 1.90
1896 2179 6.404184 CGTGATAACCCTGATTTGCACATTAA 60.404 38.462 0.00 0.00 0.00 1.40
1897 2180 7.491682 GTGATAACCCTGATTTGCACATTAAT 58.508 34.615 0.00 0.00 0.00 1.40
1898 2181 7.981225 GTGATAACCCTGATTTGCACATTAATT 59.019 33.333 0.00 0.00 0.00 1.40
1899 2182 7.980662 TGATAACCCTGATTTGCACATTAATTG 59.019 33.333 0.00 0.00 0.00 2.32
1900 2183 5.743636 ACCCTGATTTGCACATTAATTGT 57.256 34.783 0.00 0.00 39.91 2.71
1901 2184 6.112927 ACCCTGATTTGCACATTAATTGTT 57.887 33.333 0.00 0.00 36.00 2.83
1902 2185 5.933463 ACCCTGATTTGCACATTAATTGTTG 59.067 36.000 0.00 0.00 36.00 3.33
1903 2186 5.163834 CCCTGATTTGCACATTAATTGTTGC 60.164 40.000 6.53 6.53 36.00 4.17
1904 2187 5.163834 CCTGATTTGCACATTAATTGTTGCC 60.164 40.000 9.79 0.00 36.00 4.52
1905 2188 5.549347 TGATTTGCACATTAATTGTTGCCT 58.451 33.333 9.79 0.00 36.00 4.75
1906 2189 5.408909 TGATTTGCACATTAATTGTTGCCTG 59.591 36.000 9.79 0.00 36.00 4.85
1907 2190 3.316071 TGCACATTAATTGTTGCCTGG 57.684 42.857 9.79 0.00 36.00 4.45
1908 2191 2.028294 TGCACATTAATTGTTGCCTGGG 60.028 45.455 9.79 0.00 36.00 4.45
1909 2192 2.233431 GCACATTAATTGTTGCCTGGGA 59.767 45.455 0.00 0.00 36.00 4.37
1910 2193 3.306641 GCACATTAATTGTTGCCTGGGAA 60.307 43.478 0.00 0.00 36.00 3.97
1911 2194 4.497300 CACATTAATTGTTGCCTGGGAAG 58.503 43.478 0.00 0.00 36.00 3.46
1912 2195 4.021192 CACATTAATTGTTGCCTGGGAAGT 60.021 41.667 0.00 0.00 36.00 3.01
1913 2196 4.021192 ACATTAATTGTTGCCTGGGAAGTG 60.021 41.667 0.00 0.00 33.74 3.16
1914 2197 0.681175 AATTGTTGCCTGGGAAGTGC 59.319 50.000 0.00 0.00 0.00 4.40
1915 2198 0.178953 ATTGTTGCCTGGGAAGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
1938 2221 0.249238 GAGCATCTACAGCAGGACGG 60.249 60.000 0.00 0.00 0.00 4.79
1946 2229 1.302033 CAGCAGGACGGCTCAAACT 60.302 57.895 0.00 0.00 43.68 2.66
1947 2230 0.886490 CAGCAGGACGGCTCAAACTT 60.886 55.000 0.00 0.00 43.68 2.66
1949 2232 1.279271 AGCAGGACGGCTCAAACTTAT 59.721 47.619 0.00 0.00 41.05 1.73
1952 2235 2.932614 CAGGACGGCTCAAACTTATCTG 59.067 50.000 0.00 0.00 0.00 2.90
1958 2241 3.432252 CGGCTCAAACTTATCTGAAACGT 59.568 43.478 0.00 0.00 0.00 3.99
1959 2242 4.434330 CGGCTCAAACTTATCTGAAACGTC 60.434 45.833 0.00 0.00 0.00 4.34
1963 2246 2.005971 ACTTATCTGAAACGTCCGGC 57.994 50.000 0.00 0.00 0.00 6.13
1964 2247 1.274167 ACTTATCTGAAACGTCCGGCA 59.726 47.619 0.00 0.00 0.00 5.69
1966 2249 1.179152 TATCTGAAACGTCCGGCAGA 58.821 50.000 9.26 9.26 41.14 4.26
1968 2251 0.389817 TCTGAAACGTCCGGCAGATG 60.390 55.000 0.00 0.00 37.53 2.90
1969 2252 0.389817 CTGAAACGTCCGGCAGATGA 60.390 55.000 0.00 0.00 35.30 2.92
1970 2253 0.249120 TGAAACGTCCGGCAGATGAT 59.751 50.000 0.00 0.00 35.30 2.45
2000 2284 5.692613 TTGACCGGTTACAAAATTTCGAT 57.307 34.783 9.42 0.00 0.00 3.59
2001 2285 5.285798 TGACCGGTTACAAAATTTCGATC 57.714 39.130 9.42 0.00 0.00 3.69
2002 2286 4.998672 TGACCGGTTACAAAATTTCGATCT 59.001 37.500 9.42 0.00 0.00 2.75
2009 2293 6.238022 GGTTACAAAATTTCGATCTAGACGGG 60.238 42.308 12.62 0.00 0.00 5.28
2020 2304 2.501223 CTAGACGGGCGCCTCAAACA 62.501 60.000 28.56 6.70 0.00 2.83
2021 2305 2.501223 TAGACGGGCGCCTCAAACAG 62.501 60.000 28.56 11.32 0.00 3.16
2032 2316 1.308998 CTCAAACAGGCCTCAAACGT 58.691 50.000 0.00 0.00 0.00 3.99
2053 2337 4.115199 GGCTGACCGGCATCCCTT 62.115 66.667 0.00 0.00 38.25 3.95
2058 2342 2.290323 GCTGACCGGCATCCCTTATATT 60.290 50.000 0.00 0.00 0.00 1.28
2063 2347 2.359900 CGGCATCCCTTATATTCAGCC 58.640 52.381 0.00 0.00 37.54 4.85
2074 2358 8.772250 TCCCTTATATTCAGCCTAAATATGAGG 58.228 37.037 10.27 10.27 44.57 3.86
2075 2359 8.970859 CCTTATATTCAGCCTAAATATGAGGG 57.029 38.462 9.60 0.00 42.98 4.30
2076 2360 7.500559 CCTTATATTCAGCCTAAATATGAGGGC 59.499 40.741 9.60 5.73 42.98 5.19
2080 2364 1.809684 GCCTAAATATGAGGGCGTCC 58.190 55.000 0.00 0.00 35.08 4.79
2081 2365 1.939838 GCCTAAATATGAGGGCGTCCG 60.940 57.143 0.00 0.00 38.33 4.79
2082 2366 1.429463 CTAAATATGAGGGCGTCCGC 58.571 55.000 1.48 1.48 38.33 5.54
2083 2367 1.000955 CTAAATATGAGGGCGTCCGCT 59.999 52.381 12.11 0.00 41.60 5.52
2084 2368 1.045407 AAATATGAGGGCGTCCGCTA 58.955 50.000 12.11 1.29 41.60 4.26
2085 2369 1.267121 AATATGAGGGCGTCCGCTAT 58.733 50.000 12.11 5.69 41.60 2.97
2086 2370 0.532573 ATATGAGGGCGTCCGCTATG 59.467 55.000 12.11 0.00 41.60 2.23
2087 2371 0.826256 TATGAGGGCGTCCGCTATGT 60.826 55.000 12.11 0.00 41.60 2.29
2088 2372 2.027751 GAGGGCGTCCGCTATGTC 59.972 66.667 11.82 0.00 41.60 3.06
2089 2373 3.825833 GAGGGCGTCCGCTATGTCG 62.826 68.421 11.82 0.00 41.60 4.35
2097 2381 2.430921 CGCTATGTCGGATCCGGC 60.431 66.667 31.57 31.57 45.14 6.13
2098 2382 2.048127 GCTATGTCGGATCCGGCC 60.048 66.667 34.30 23.91 44.19 6.13
2099 2383 2.657237 CTATGTCGGATCCGGCCC 59.343 66.667 34.30 21.52 44.19 5.80
2100 2384 2.123208 TATGTCGGATCCGGCCCA 60.123 61.111 34.30 25.90 44.19 5.36
2101 2385 2.436087 CTATGTCGGATCCGGCCCAC 62.436 65.000 34.30 24.01 44.19 4.61
2103 2387 4.832608 GTCGGATCCGGCCCACAC 62.833 72.222 32.79 18.95 38.20 3.82
2105 2389 4.838152 CGGATCCGGCCCACACTG 62.838 72.222 26.95 0.00 35.56 3.66
2106 2390 4.489771 GGATCCGGCCCACACTGG 62.490 72.222 0.00 0.00 37.25 4.00
2114 2398 4.704833 CCCACACTGGCTCACCCG 62.705 72.222 0.00 0.00 35.79 5.28
2115 2399 3.625897 CCACACTGGCTCACCCGA 61.626 66.667 0.00 0.00 35.87 5.14
2116 2400 2.357517 CACACTGGCTCACCCGAC 60.358 66.667 0.00 0.00 35.87 4.79
2117 2401 3.626924 ACACTGGCTCACCCGACC 61.627 66.667 0.00 0.00 35.87 4.79
2118 2402 4.394712 CACTGGCTCACCCGACCC 62.395 72.222 0.00 0.00 35.87 4.46
2123 2407 3.717294 GCTCACCCGACCCCACAT 61.717 66.667 0.00 0.00 0.00 3.21
2124 2408 2.363975 GCTCACCCGACCCCACATA 61.364 63.158 0.00 0.00 0.00 2.29
2125 2409 1.696097 GCTCACCCGACCCCACATAT 61.696 60.000 0.00 0.00 0.00 1.78
2126 2410 1.712056 CTCACCCGACCCCACATATA 58.288 55.000 0.00 0.00 0.00 0.86
2127 2411 2.257207 CTCACCCGACCCCACATATAT 58.743 52.381 0.00 0.00 0.00 0.86
2128 2412 2.637872 CTCACCCGACCCCACATATATT 59.362 50.000 0.00 0.00 0.00 1.28
2129 2413 2.635915 TCACCCGACCCCACATATATTC 59.364 50.000 0.00 0.00 0.00 1.75
2130 2414 1.982958 ACCCGACCCCACATATATTCC 59.017 52.381 0.00 0.00 0.00 3.01
2131 2415 1.280998 CCCGACCCCACATATATTCCC 59.719 57.143 0.00 0.00 0.00 3.97
2132 2416 1.280998 CCGACCCCACATATATTCCCC 59.719 57.143 0.00 0.00 0.00 4.81
2133 2417 2.266279 CGACCCCACATATATTCCCCT 58.734 52.381 0.00 0.00 0.00 4.79
2134 2418 2.236395 CGACCCCACATATATTCCCCTC 59.764 54.545 0.00 0.00 0.00 4.30
2135 2419 3.256704 GACCCCACATATATTCCCCTCA 58.743 50.000 0.00 0.00 0.00 3.86
2136 2420 3.852578 GACCCCACATATATTCCCCTCAT 59.147 47.826 0.00 0.00 0.00 2.90
2137 2421 3.852578 ACCCCACATATATTCCCCTCATC 59.147 47.826 0.00 0.00 0.00 2.92
2138 2422 4.114597 CCCCACATATATTCCCCTCATCT 58.885 47.826 0.00 0.00 0.00 2.90
2139 2423 4.080129 CCCCACATATATTCCCCTCATCTG 60.080 50.000 0.00 0.00 0.00 2.90
2140 2424 4.521146 CCACATATATTCCCCTCATCTGC 58.479 47.826 0.00 0.00 0.00 4.26
2141 2425 4.226846 CCACATATATTCCCCTCATCTGCT 59.773 45.833 0.00 0.00 0.00 4.24
2142 2426 5.426504 CACATATATTCCCCTCATCTGCTC 58.573 45.833 0.00 0.00 0.00 4.26
2143 2427 4.161189 ACATATATTCCCCTCATCTGCTCG 59.839 45.833 0.00 0.00 0.00 5.03
2144 2428 0.681733 TATTCCCCTCATCTGCTCGC 59.318 55.000 0.00 0.00 0.00 5.03
2145 2429 2.049627 ATTCCCCTCATCTGCTCGCC 62.050 60.000 0.00 0.00 0.00 5.54
2146 2430 4.598894 CCCCTCATCTGCTCGCCG 62.599 72.222 0.00 0.00 0.00 6.46
2147 2431 4.598894 CCCTCATCTGCTCGCCGG 62.599 72.222 0.00 0.00 0.00 6.13
2148 2432 3.531207 CCTCATCTGCTCGCCGGA 61.531 66.667 5.05 0.00 0.00 5.14
2149 2433 2.279120 CTCATCTGCTCGCCGGAC 60.279 66.667 5.05 0.00 0.00 4.79
2150 2434 3.781770 CTCATCTGCTCGCCGGACC 62.782 68.421 5.05 0.00 0.00 4.46
2151 2435 4.147449 CATCTGCTCGCCGGACCA 62.147 66.667 5.05 0.00 0.00 4.02
2152 2436 3.390521 ATCTGCTCGCCGGACCAA 61.391 61.111 5.05 0.00 0.00 3.67
2153 2437 2.954684 ATCTGCTCGCCGGACCAAA 61.955 57.895 5.05 0.00 0.00 3.28
2154 2438 3.423154 CTGCTCGCCGGACCAAAC 61.423 66.667 5.05 0.00 0.00 2.93
2156 2440 4.699522 GCTCGCCGGACCAAACCT 62.700 66.667 5.05 0.00 0.00 3.50
2157 2441 2.032071 CTCGCCGGACCAAACCTT 59.968 61.111 5.05 0.00 0.00 3.50
2158 2442 1.294138 CTCGCCGGACCAAACCTTA 59.706 57.895 5.05 0.00 0.00 2.69
2159 2443 0.739813 CTCGCCGGACCAAACCTTAG 60.740 60.000 5.05 0.00 0.00 2.18
2160 2444 2.396157 CGCCGGACCAAACCTTAGC 61.396 63.158 5.05 0.00 0.00 3.09
2161 2445 2.044555 GCCGGACCAAACCTTAGCC 61.045 63.158 5.05 0.00 0.00 3.93
2162 2446 1.377229 CCGGACCAAACCTTAGCCA 59.623 57.895 0.00 0.00 0.00 4.75
2163 2447 0.958876 CCGGACCAAACCTTAGCCAC 60.959 60.000 0.00 0.00 0.00 5.01
2164 2448 0.036306 CGGACCAAACCTTAGCCACT 59.964 55.000 0.00 0.00 0.00 4.00
2165 2449 1.822506 GGACCAAACCTTAGCCACTC 58.177 55.000 0.00 0.00 0.00 3.51
2166 2450 1.613520 GGACCAAACCTTAGCCACTCC 60.614 57.143 0.00 0.00 0.00 3.85
2167 2451 0.404426 ACCAAACCTTAGCCACTCCC 59.596 55.000 0.00 0.00 0.00 4.30
2168 2452 0.323451 CCAAACCTTAGCCACTCCCC 60.323 60.000 0.00 0.00 0.00 4.81
2169 2453 0.698818 CAAACCTTAGCCACTCCCCT 59.301 55.000 0.00 0.00 0.00 4.79
2170 2454 0.992695 AAACCTTAGCCACTCCCCTC 59.007 55.000 0.00 0.00 0.00 4.30
2171 2455 0.914902 AACCTTAGCCACTCCCCTCC 60.915 60.000 0.00 0.00 0.00 4.30
2172 2456 2.435693 CCTTAGCCACTCCCCTCCG 61.436 68.421 0.00 0.00 0.00 4.63
2173 2457 1.686110 CTTAGCCACTCCCCTCCGT 60.686 63.158 0.00 0.00 0.00 4.69
2174 2458 1.677637 CTTAGCCACTCCCCTCCGTC 61.678 65.000 0.00 0.00 0.00 4.79
2175 2459 2.449967 TTAGCCACTCCCCTCCGTCA 62.450 60.000 0.00 0.00 0.00 4.35
2176 2460 4.083862 GCCACTCCCCTCCGTCAC 62.084 72.222 0.00 0.00 0.00 3.67
2177 2461 3.391382 CCACTCCCCTCCGTCACC 61.391 72.222 0.00 0.00 0.00 4.02
2178 2462 3.391382 CACTCCCCTCCGTCACCC 61.391 72.222 0.00 0.00 0.00 4.61
2179 2463 3.923645 ACTCCCCTCCGTCACCCA 61.924 66.667 0.00 0.00 0.00 4.51
2180 2464 2.606519 CTCCCCTCCGTCACCCAA 60.607 66.667 0.00 0.00 0.00 4.12
2181 2465 2.606519 TCCCCTCCGTCACCCAAG 60.607 66.667 0.00 0.00 0.00 3.61
2182 2466 3.717294 CCCCTCCGTCACCCAAGG 61.717 72.222 0.00 0.00 0.00 3.61
2183 2467 4.410400 CCCTCCGTCACCCAAGGC 62.410 72.222 0.00 0.00 0.00 4.35
2184 2468 4.410400 CCTCCGTCACCCAAGGCC 62.410 72.222 0.00 0.00 0.00 5.19
2185 2469 3.636231 CTCCGTCACCCAAGGCCA 61.636 66.667 5.01 0.00 0.00 5.36
2186 2470 3.901797 CTCCGTCACCCAAGGCCAC 62.902 68.421 5.01 0.00 0.00 5.01
2188 2472 3.953775 CGTCACCCAAGGCCACCT 61.954 66.667 5.01 0.00 33.87 4.00
2189 2473 2.034221 GTCACCCAAGGCCACCTC 59.966 66.667 5.01 0.00 30.89 3.85
2190 2474 3.256960 TCACCCAAGGCCACCTCC 61.257 66.667 5.01 0.00 30.89 4.30
2191 2475 4.722700 CACCCAAGGCCACCTCCG 62.723 72.222 5.01 0.00 30.89 4.63
2199 2483 4.162690 GCCACCTCCGGCGATCTT 62.163 66.667 9.30 0.00 43.52 2.40
2200 2484 2.107141 CCACCTCCGGCGATCTTC 59.893 66.667 9.30 0.00 0.00 2.87
2201 2485 2.278857 CACCTCCGGCGATCTTCG 60.279 66.667 9.30 0.00 43.89 3.79
2202 2486 3.528370 ACCTCCGGCGATCTTCGG 61.528 66.667 9.30 14.86 46.89 4.30
2203 2487 3.528370 CCTCCGGCGATCTTCGGT 61.528 66.667 9.30 0.00 45.79 4.69
2204 2488 2.026301 CTCCGGCGATCTTCGGTC 59.974 66.667 9.30 0.00 45.79 4.79
2205 2489 3.808771 CTCCGGCGATCTTCGGTCG 62.809 68.421 9.30 4.73 45.79 4.79
2206 2490 4.189188 CCGGCGATCTTCGGTCGT 62.189 66.667 9.30 0.00 40.84 4.34
2207 2491 2.651232 CGGCGATCTTCGGTCGTC 60.651 66.667 0.00 0.00 40.84 4.20
2208 2492 2.799371 GGCGATCTTCGGTCGTCT 59.201 61.111 0.00 0.00 40.32 4.18
2209 2493 1.298488 GGCGATCTTCGGTCGTCTC 60.298 63.158 0.00 0.00 40.32 3.36
2210 2494 1.298488 GCGATCTTCGGTCGTCTCC 60.298 63.158 0.00 0.00 40.84 3.71
2229 2513 4.424711 ACATGGCGGGCAACGGAT 62.425 61.111 8.78 0.00 44.51 4.18
2230 2514 3.585990 CATGGCGGGCAACGGATC 61.586 66.667 8.78 0.00 44.51 3.36
2231 2515 3.797353 ATGGCGGGCAACGGATCT 61.797 61.111 8.78 0.00 44.51 2.75
2232 2516 4.776322 TGGCGGGCAACGGATCTG 62.776 66.667 0.01 0.00 44.51 2.90
2233 2517 4.467084 GGCGGGCAACGGATCTGA 62.467 66.667 9.00 0.00 44.51 3.27
2234 2518 3.195698 GCGGGCAACGGATCTGAC 61.196 66.667 9.00 0.00 44.51 3.51
2235 2519 2.579201 CGGGCAACGGATCTGACT 59.421 61.111 9.00 0.00 39.75 3.41
2236 2520 1.519455 CGGGCAACGGATCTGACTC 60.519 63.158 9.00 0.00 39.75 3.36
2237 2521 1.153349 GGGCAACGGATCTGACTCC 60.153 63.158 9.00 5.44 37.60 3.85
2238 2522 1.153349 GGCAACGGATCTGACTCCC 60.153 63.158 9.00 0.00 31.04 4.30
2239 2523 1.596934 GCAACGGATCTGACTCCCA 59.403 57.895 9.00 0.00 31.04 4.37
2240 2524 0.741221 GCAACGGATCTGACTCCCAC 60.741 60.000 9.00 0.00 31.04 4.61
2241 2525 0.108138 CAACGGATCTGACTCCCACC 60.108 60.000 9.00 0.00 31.04 4.61
2242 2526 0.544357 AACGGATCTGACTCCCACCA 60.544 55.000 9.00 0.00 31.04 4.17
2243 2527 0.972983 ACGGATCTGACTCCCACCAG 60.973 60.000 9.00 0.00 31.04 4.00
2244 2528 0.972983 CGGATCTGACTCCCACCAGT 60.973 60.000 0.00 0.00 31.04 4.00
2245 2529 0.827368 GGATCTGACTCCCACCAGTC 59.173 60.000 0.00 0.00 42.90 3.51
2246 2530 0.827368 GATCTGACTCCCACCAGTCC 59.173 60.000 0.00 0.00 42.04 3.85
2247 2531 0.972983 ATCTGACTCCCACCAGTCCG 60.973 60.000 0.00 0.00 42.04 4.79
2248 2532 2.603473 TGACTCCCACCAGTCCGG 60.603 66.667 0.00 0.00 42.04 5.14
2249 2533 2.283676 GACTCCCACCAGTCCGGA 60.284 66.667 0.00 0.00 37.43 5.14
2250 2534 1.686110 GACTCCCACCAGTCCGGAT 60.686 63.158 7.81 0.00 37.43 4.18
2251 2535 1.677637 GACTCCCACCAGTCCGGATC 61.678 65.000 7.81 0.93 37.43 3.36
2252 2536 2.365105 TCCCACCAGTCCGGATCC 60.365 66.667 7.81 0.00 38.63 3.36
2253 2537 3.849951 CCCACCAGTCCGGATCCG 61.850 72.222 27.65 27.65 38.63 4.18
2254 2538 4.530857 CCACCAGTCCGGATCCGC 62.531 72.222 29.12 16.06 38.63 5.54
2255 2539 4.873129 CACCAGTCCGGATCCGCG 62.873 72.222 29.12 20.86 38.63 6.46
2257 2541 4.570663 CCAGTCCGGATCCGCGAC 62.571 72.222 31.82 31.82 38.74 5.19
2258 2542 3.518998 CAGTCCGGATCCGCGACT 61.519 66.667 34.09 34.09 44.41 4.18
2259 2543 3.518998 AGTCCGGATCCGCGACTG 61.519 66.667 36.55 23.03 43.11 3.51
2260 2544 4.570663 GTCCGGATCCGCGACTGG 62.571 72.222 31.70 19.33 36.99 4.00
2268 2552 4.082523 CCGCGACTGGGGTGTCAT 62.083 66.667 8.23 0.00 43.03 3.06
2269 2553 2.509336 CGCGACTGGGGTGTCATC 60.509 66.667 0.00 0.00 36.82 2.92
2270 2554 2.125106 GCGACTGGGGTGTCATCC 60.125 66.667 0.00 0.00 36.82 3.51
2271 2555 2.584608 CGACTGGGGTGTCATCCC 59.415 66.667 15.04 15.04 46.31 3.85
2277 2561 2.516930 GGGTGTCATCCCATGCGG 60.517 66.667 0.00 0.00 46.30 5.69
2287 2571 2.124570 CCATGCGGGTTGGAGGAG 60.125 66.667 0.00 0.00 36.26 3.69
2288 2572 2.124570 CATGCGGGTTGGAGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
2289 2573 4.115199 ATGCGGGTTGGAGGAGGC 62.115 66.667 0.00 0.00 0.00 4.70
2291 2575 4.344865 GCGGGTTGGAGGAGGCAA 62.345 66.667 0.00 0.00 0.00 4.52
2292 2576 2.359975 CGGGTTGGAGGAGGCAAC 60.360 66.667 0.00 0.00 0.00 4.17
2293 2577 2.359975 GGGTTGGAGGAGGCAACG 60.360 66.667 0.00 0.00 46.39 4.10
2294 2578 2.359975 GGTTGGAGGAGGCAACGG 60.360 66.667 0.00 0.00 46.39 4.44
2295 2579 2.430367 GTTGGAGGAGGCAACGGT 59.570 61.111 0.00 0.00 46.39 4.83
2296 2580 1.671379 GTTGGAGGAGGCAACGGTC 60.671 63.158 0.00 0.00 46.39 4.79
2297 2581 3.234630 TTGGAGGAGGCAACGGTCG 62.235 63.158 0.00 0.00 46.39 4.79
2298 2582 3.692406 GGAGGAGGCAACGGTCGT 61.692 66.667 0.00 0.00 46.39 4.34
2299 2583 2.126031 GAGGAGGCAACGGTCGTC 60.126 66.667 0.00 0.00 46.39 4.20
2300 2584 3.644399 GAGGAGGCAACGGTCGTCC 62.644 68.421 0.00 4.18 46.39 4.79
2310 2594 2.742372 GGTCGTCCGCATTGCACT 60.742 61.111 9.69 0.00 0.00 4.40
2311 2595 2.740714 GGTCGTCCGCATTGCACTC 61.741 63.158 9.69 0.00 0.00 3.51
2312 2596 2.434185 TCGTCCGCATTGCACTCC 60.434 61.111 9.69 0.00 0.00 3.85
2313 2597 3.853330 CGTCCGCATTGCACTCCG 61.853 66.667 9.69 1.28 0.00 4.63
2314 2598 4.166011 GTCCGCATTGCACTCCGC 62.166 66.667 9.69 0.00 42.89 5.54
2319 2603 3.869272 CATTGCACTCCGCCGCTC 61.869 66.667 0.00 0.00 41.33 5.03
2367 2651 2.053282 GGATCTATCCAACGCGACTC 57.947 55.000 15.93 0.00 46.38 3.36
2368 2652 1.336056 GGATCTATCCAACGCGACTCC 60.336 57.143 15.93 1.07 46.38 3.85
2369 2653 1.337071 GATCTATCCAACGCGACTCCA 59.663 52.381 15.93 0.00 0.00 3.86
2370 2654 1.399714 TCTATCCAACGCGACTCCAT 58.600 50.000 15.93 0.00 0.00 3.41
2371 2655 2.578786 TCTATCCAACGCGACTCCATA 58.421 47.619 15.93 1.19 0.00 2.74
2372 2656 2.552743 TCTATCCAACGCGACTCCATAG 59.447 50.000 15.93 11.33 0.00 2.23
2373 2657 0.249489 ATCCAACGCGACTCCATAGC 60.249 55.000 15.93 0.00 0.00 2.97
2379 2663 2.353607 CGACTCCATAGCGTCGGC 60.354 66.667 4.09 0.00 46.61 5.54
2390 2674 2.739287 CGTCGGCTTAACGGGCAA 60.739 61.111 0.00 0.00 36.51 4.52
2391 2675 2.104253 CGTCGGCTTAACGGGCAAT 61.104 57.895 0.00 0.00 36.51 3.56
2392 2676 1.641123 CGTCGGCTTAACGGGCAATT 61.641 55.000 0.00 0.00 36.51 2.32
2393 2677 0.179174 GTCGGCTTAACGGGCAATTG 60.179 55.000 0.00 0.00 0.00 2.32
2394 2678 0.321741 TCGGCTTAACGGGCAATTGA 60.322 50.000 10.34 0.00 0.00 2.57
2395 2679 0.523966 CGGCTTAACGGGCAATTGAA 59.476 50.000 10.34 0.00 0.00 2.69
2396 2680 1.134175 CGGCTTAACGGGCAATTGAAT 59.866 47.619 10.34 0.00 0.00 2.57
2397 2681 2.794631 CGGCTTAACGGGCAATTGAATC 60.795 50.000 10.34 0.00 0.00 2.52
2398 2682 2.481276 GGCTTAACGGGCAATTGAATCC 60.481 50.000 10.34 6.25 0.00 3.01
2399 2683 2.427095 GCTTAACGGGCAATTGAATCCT 59.573 45.455 10.34 0.00 0.00 3.24
2400 2684 3.489229 GCTTAACGGGCAATTGAATCCTC 60.489 47.826 10.34 0.00 0.00 3.71
2401 2685 2.514458 AACGGGCAATTGAATCCTCT 57.486 45.000 10.34 0.00 0.00 3.69
2402 2686 1.755179 ACGGGCAATTGAATCCTCTG 58.245 50.000 10.34 0.00 0.00 3.35
2403 2687 1.027357 CGGGCAATTGAATCCTCTGG 58.973 55.000 10.34 0.00 0.00 3.86
2416 2700 3.626996 CTCTGGGGTTGATGCGGCA 62.627 63.158 4.58 4.58 0.00 5.69
2440 2724 1.228552 GGTGGCTGCAAAGGAGGAA 60.229 57.895 0.50 0.00 0.00 3.36
2442 2726 0.538287 GTGGCTGCAAAGGAGGAAGT 60.538 55.000 0.50 0.00 0.00 3.01
2459 2743 3.863543 TCATCCGCGCACGCATTG 61.864 61.111 16.04 8.90 42.06 2.82
2475 2759 2.183504 TTGCGAAGAAGCGGCAACA 61.184 52.632 1.45 0.00 41.34 3.33
2478 2762 1.493311 CGAAGAAGCGGCAACAGAC 59.507 57.895 1.45 0.00 0.00 3.51
2485 2769 2.544359 CGGCAACAGACGAACACG 59.456 61.111 0.00 0.00 35.21 4.49
2519 2803 3.077556 AGCAGAATCGGGCGGTCT 61.078 61.111 0.00 0.00 34.54 3.85
2538 2822 3.654143 TGCCATGGCTGGACTGCT 61.654 61.111 35.53 0.00 46.37 4.24
2542 2826 1.630126 CCATGGCTGGACTGCTACCT 61.630 60.000 0.00 0.00 46.37 3.08
2561 2845 3.390175 CTAAGGAGGAGAAGGAGGACA 57.610 52.381 0.00 0.00 0.00 4.02
2562 2846 2.723530 AAGGAGGAGAAGGAGGACAA 57.276 50.000 0.00 0.00 0.00 3.18
2564 2848 1.150135 AGGAGGAGAAGGAGGACAACA 59.850 52.381 0.00 0.00 0.00 3.33
2572 2856 2.027625 GGAGGACAACAACGGCGAG 61.028 63.158 16.62 8.41 0.00 5.03
2578 2863 2.665185 AACAACGGCGAGGACAGC 60.665 61.111 16.62 0.00 0.00 4.40
2595 2880 2.664825 GCTCCAGCTCGATCCCTAT 58.335 57.895 0.00 0.00 38.21 2.57
2599 2884 0.668706 CCAGCTCGATCCCTATTGCG 60.669 60.000 0.00 0.00 0.00 4.85
2609 2894 0.174845 CCCTATTGCGTCTTCGACCA 59.825 55.000 0.00 0.00 39.71 4.02
2610 2895 1.404986 CCCTATTGCGTCTTCGACCAA 60.405 52.381 0.00 0.00 39.71 3.67
2622 2907 0.742505 TCGACCAATACTTCCGCGAT 59.257 50.000 8.23 0.00 0.00 4.58
2628 2913 3.057734 CCAATACTTCCGCGATAAGGAC 58.942 50.000 20.47 0.00 37.53 3.85
2635 2920 1.226859 CGCGATAAGGACGGCAAGA 60.227 57.895 0.00 0.00 0.00 3.02
2637 2922 1.491505 GCGATAAGGACGGCAAGAGC 61.492 60.000 0.00 0.00 41.10 4.09
2640 2925 1.961180 ATAAGGACGGCAAGAGCGCT 61.961 55.000 11.27 11.27 43.41 5.92
2647 2932 3.130160 GCAAGAGCGCTGGGAAGG 61.130 66.667 18.48 0.00 0.00 3.46
2671 4576 0.759346 GGGTAGCCGTGGATGATCTT 59.241 55.000 0.00 0.00 0.00 2.40
2672 4577 1.270358 GGGTAGCCGTGGATGATCTTC 60.270 57.143 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 1.696314 ATCCCATGCCCGTACCCTT 60.696 57.895 0.00 0.00 0.00 3.95
297 327 6.872920 ACAACAACACATCCTAAACAACAAT 58.127 32.000 0.00 0.00 0.00 2.71
387 455 9.398170 ACATTAATTTGAGCATCGCATTATTAC 57.602 29.630 0.00 0.00 38.61 1.89
396 464 9.162793 GTCTGAATAACATTAATTTGAGCATCG 57.837 33.333 0.00 0.00 38.61 3.84
420 488 4.885325 ACCACGGATAAAAATACCCATGTC 59.115 41.667 0.00 0.00 0.00 3.06
508 579 5.389520 TCCATTTGAACTTACCCATCACAA 58.610 37.500 0.00 0.00 0.00 3.33
509 580 4.991776 TCCATTTGAACTTACCCATCACA 58.008 39.130 0.00 0.00 0.00 3.58
531 602 7.018550 TGGAGCTATCCCATAACTTTATCCATT 59.981 37.037 0.00 0.00 46.04 3.16
536 607 6.505344 TGGATGGAGCTATCCCATAACTTTAT 59.495 38.462 12.16 0.00 46.04 1.40
542 613 4.178339 ACATGGATGGAGCTATCCCATAA 58.822 43.478 12.16 2.49 46.04 1.90
549 620 4.018960 GGGTATGAACATGGATGGAGCTAT 60.019 45.833 0.00 0.00 0.00 2.97
605 676 0.748005 CACGGGGAGCGGATTTTCAT 60.748 55.000 0.00 0.00 0.00 2.57
606 677 1.376683 CACGGGGAGCGGATTTTCA 60.377 57.895 0.00 0.00 0.00 2.69
618 689 0.677842 GTATACAGGTAGGCACGGGG 59.322 60.000 0.00 0.00 0.00 5.73
770 872 1.216710 GAGGAGACTTGACCGCCAG 59.783 63.158 0.00 0.00 44.43 4.85
850 962 0.033642 TGTTTCGGGATGTACACGCA 59.966 50.000 0.00 0.00 45.95 5.24
866 978 6.015519 ACACATAGTACATGCCACATTTTGTT 60.016 34.615 0.00 0.00 0.00 2.83
903 1021 4.717233 ATAGACAGGAGATGATCATCGC 57.283 45.455 26.05 26.05 42.48 4.58
904 1022 6.092092 GTCAATAGACAGGAGATGATCATCG 58.908 44.000 26.09 16.16 44.34 3.84
908 1026 5.279406 CCTGGTCAATAGACAGGAGATGATC 60.279 48.000 3.95 0.00 46.80 2.92
909 1027 4.592351 CCTGGTCAATAGACAGGAGATGAT 59.408 45.833 3.95 0.00 46.80 2.45
913 1032 3.366396 GTCCTGGTCAATAGACAGGAGA 58.634 50.000 12.50 0.00 44.85 3.71
957 1076 6.597672 TGTATTTGGATGGTGTACTGATGAAC 59.402 38.462 0.00 0.00 0.00 3.18
983 1103 0.824109 CATGTAGGAGCTGGGACGAA 59.176 55.000 0.00 0.00 0.00 3.85
1215 1335 4.603989 TCACATCACCAAATGCATTTGT 57.396 36.364 37.23 26.79 44.21 2.83
1216 1336 5.926214 TTTCACATCACCAAATGCATTTG 57.074 34.783 35.14 35.14 45.04 2.32
1222 1502 4.992319 AGCAACATTTCACATCACCAAATG 59.008 37.500 0.00 0.00 41.40 2.32
1228 1508 3.482786 GACGAGCAACATTTCACATCAC 58.517 45.455 0.00 0.00 0.00 3.06
1384 1667 3.580319 GGGTGCCACCAACTCCCT 61.580 66.667 17.22 0.00 41.02 4.20
1386 1669 2.034221 GAGGGTGCCACCAACTCC 59.966 66.667 17.22 0.00 41.02 3.85
1393 1676 2.781595 ATCAACGACGAGGGTGCCAC 62.782 60.000 0.00 0.00 0.00 5.01
1394 1677 2.107041 AATCAACGACGAGGGTGCCA 62.107 55.000 0.00 0.00 0.00 4.92
1432 1715 0.539438 TCTGCCATTTCCAAACCGCT 60.539 50.000 0.00 0.00 0.00 5.52
1451 1734 2.749044 CAGCGCCATGTCCAAGCT 60.749 61.111 2.29 0.00 38.90 3.74
1455 1738 3.233259 TTCGTCAGCGCCATGTCCA 62.233 57.895 2.29 0.00 38.14 4.02
1679 1962 2.090760 GGCGGGAGTATACTACTAGCC 58.909 57.143 27.33 27.33 42.42 3.93
1688 1971 2.291209 TATGGAACGGCGGGAGTATA 57.709 50.000 13.24 0.38 0.00 1.47
1689 1972 1.640917 ATATGGAACGGCGGGAGTAT 58.359 50.000 13.24 1.40 0.00 2.12
1690 1973 1.416243 AATATGGAACGGCGGGAGTA 58.584 50.000 13.24 0.00 0.00 2.59
1691 1974 1.069668 GTAATATGGAACGGCGGGAGT 59.930 52.381 13.24 0.00 0.00 3.85
1692 1975 1.343465 AGTAATATGGAACGGCGGGAG 59.657 52.381 13.24 0.00 0.00 4.30
1693 1976 1.342174 GAGTAATATGGAACGGCGGGA 59.658 52.381 13.24 0.00 0.00 5.14
1694 1977 1.792006 GAGTAATATGGAACGGCGGG 58.208 55.000 13.24 0.00 0.00 6.13
1695 1978 1.269413 ACGAGTAATATGGAACGGCGG 60.269 52.381 13.24 0.00 0.00 6.13
1696 1979 2.049228 GACGAGTAATATGGAACGGCG 58.951 52.381 4.80 4.80 0.00 6.46
1697 1980 2.401351 GGACGAGTAATATGGAACGGC 58.599 52.381 0.00 0.00 0.00 5.68
1698 1981 2.626743 AGGGACGAGTAATATGGAACGG 59.373 50.000 0.00 0.00 0.00 4.44
1699 1982 5.443185 TTAGGGACGAGTAATATGGAACG 57.557 43.478 0.00 0.00 0.00 3.95
1700 1983 9.939802 ATAATTTAGGGACGAGTAATATGGAAC 57.060 33.333 0.00 0.00 0.00 3.62
1712 1995 9.467258 CGTTGATTTAGTATAATTTAGGGACGA 57.533 33.333 0.00 0.00 0.00 4.20
1713 1996 9.467258 TCGTTGATTTAGTATAATTTAGGGACG 57.533 33.333 0.00 0.00 0.00 4.79
1730 2013 9.763465 CCGTTTTATATTACTTGTCGTTGATTT 57.237 29.630 0.00 0.00 0.00 2.17
1731 2014 9.153721 TCCGTTTTATATTACTTGTCGTTGATT 57.846 29.630 0.00 0.00 0.00 2.57
1732 2015 8.706492 TCCGTTTTATATTACTTGTCGTTGAT 57.294 30.769 0.00 0.00 0.00 2.57
1733 2016 7.276218 CCTCCGTTTTATATTACTTGTCGTTGA 59.724 37.037 0.00 0.00 0.00 3.18
1734 2017 7.396419 CCTCCGTTTTATATTACTTGTCGTTG 58.604 38.462 0.00 0.00 0.00 4.10
1735 2018 6.536224 CCCTCCGTTTTATATTACTTGTCGTT 59.464 38.462 0.00 0.00 0.00 3.85
1736 2019 6.044682 CCCTCCGTTTTATATTACTTGTCGT 58.955 40.000 0.00 0.00 0.00 4.34
1737 2020 6.275335 TCCCTCCGTTTTATATTACTTGTCG 58.725 40.000 0.00 0.00 0.00 4.35
1738 2021 7.270779 ACTCCCTCCGTTTTATATTACTTGTC 58.729 38.462 0.00 0.00 0.00 3.18
1739 2022 7.191593 ACTCCCTCCGTTTTATATTACTTGT 57.808 36.000 0.00 0.00 0.00 3.16
1740 2023 9.774413 AATACTCCCTCCGTTTTATATTACTTG 57.226 33.333 0.00 0.00 0.00 3.16
1742 2025 9.993454 GAAATACTCCCTCCGTTTTATATTACT 57.007 33.333 0.00 0.00 0.00 2.24
1743 2026 9.212641 GGAAATACTCCCTCCGTTTTATATTAC 57.787 37.037 0.00 0.00 38.44 1.89
1744 2027 9.162733 AGGAAATACTCCCTCCGTTTTATATTA 57.837 33.333 0.00 0.00 46.81 0.98
1745 2028 8.042286 AGGAAATACTCCCTCCGTTTTATATT 57.958 34.615 0.00 0.00 46.81 1.28
1746 2029 7.628501 AGGAAATACTCCCTCCGTTTTATAT 57.371 36.000 0.00 0.00 46.81 0.86
1747 2030 8.551682 TTAGGAAATACTCCCTCCGTTTTATA 57.448 34.615 0.00 0.00 46.81 0.98
1748 2031 5.970501 AGGAAATACTCCCTCCGTTTTAT 57.029 39.130 0.00 0.00 46.81 1.40
1749 2032 6.126968 CCTTAGGAAATACTCCCTCCGTTTTA 60.127 42.308 0.00 0.00 46.81 1.52
1750 2033 5.338953 CCTTAGGAAATACTCCCTCCGTTTT 60.339 44.000 0.00 0.00 46.81 2.43
1751 2034 4.163649 CCTTAGGAAATACTCCCTCCGTTT 59.836 45.833 0.00 0.00 46.81 3.60
1752 2035 3.710165 CCTTAGGAAATACTCCCTCCGTT 59.290 47.826 0.00 0.00 46.81 4.44
1753 2036 3.052338 TCCTTAGGAAATACTCCCTCCGT 60.052 47.826 0.00 0.00 46.81 4.69
1754 2037 3.573695 TCCTTAGGAAATACTCCCTCCG 58.426 50.000 0.00 0.00 46.81 4.63
1755 2038 7.680739 AGATTATCCTTAGGAAATACTCCCTCC 59.319 40.741 4.56 0.00 46.81 4.30
1756 2039 8.673456 AGATTATCCTTAGGAAATACTCCCTC 57.327 38.462 4.56 0.00 46.81 4.30
1757 2040 9.467030 AAAGATTATCCTTAGGAAATACTCCCT 57.533 33.333 4.56 0.00 46.81 4.20
1758 2041 9.727859 GAAAGATTATCCTTAGGAAATACTCCC 57.272 37.037 4.56 0.00 46.81 4.30
1821 2104 9.859427 ACGTCATACAATTGAAATGAATCAAAT 57.141 25.926 21.55 8.19 42.22 2.32
1827 2110 9.103861 TGCTATACGTCATACAATTGAAATGAA 57.896 29.630 21.55 12.23 31.77 2.57
1828 2111 8.655651 TGCTATACGTCATACAATTGAAATGA 57.344 30.769 13.59 16.55 0.00 2.57
1829 2112 9.715123 TTTGCTATACGTCATACAATTGAAATG 57.285 29.630 13.59 14.59 0.00 2.32
1830 2113 9.935682 CTTTGCTATACGTCATACAATTGAAAT 57.064 29.630 13.59 2.25 0.00 2.17
1831 2114 9.157104 TCTTTGCTATACGTCATACAATTGAAA 57.843 29.630 13.59 0.00 0.00 2.69
1832 2115 8.710835 TCTTTGCTATACGTCATACAATTGAA 57.289 30.769 13.59 0.00 0.00 2.69
1833 2116 8.710835 TTCTTTGCTATACGTCATACAATTGA 57.289 30.769 13.59 0.00 0.00 2.57
1834 2117 9.767684 TTTTCTTTGCTATACGTCATACAATTG 57.232 29.630 3.24 3.24 0.00 2.32
1836 2119 9.935682 CATTTTCTTTGCTATACGTCATACAAT 57.064 29.630 0.00 0.00 0.00 2.71
1837 2120 9.157104 TCATTTTCTTTGCTATACGTCATACAA 57.843 29.630 0.00 0.00 0.00 2.41
1838 2121 8.710835 TCATTTTCTTTGCTATACGTCATACA 57.289 30.769 0.00 0.00 0.00 2.29
1839 2122 9.031360 TCTCATTTTCTTTGCTATACGTCATAC 57.969 33.333 0.00 0.00 0.00 2.39
1840 2123 9.594478 TTCTCATTTTCTTTGCTATACGTCATA 57.406 29.630 0.00 0.00 0.00 2.15
1841 2124 8.492673 TTCTCATTTTCTTTGCTATACGTCAT 57.507 30.769 0.00 0.00 0.00 3.06
1842 2125 7.899178 TTCTCATTTTCTTTGCTATACGTCA 57.101 32.000 0.00 0.00 0.00 4.35
1843 2126 8.391106 ACATTCTCATTTTCTTTGCTATACGTC 58.609 33.333 0.00 0.00 0.00 4.34
1844 2127 8.268850 ACATTCTCATTTTCTTTGCTATACGT 57.731 30.769 0.00 0.00 0.00 3.57
1845 2128 9.638300 GTACATTCTCATTTTCTTTGCTATACG 57.362 33.333 0.00 0.00 0.00 3.06
1846 2129 9.638300 CGTACATTCTCATTTTCTTTGCTATAC 57.362 33.333 0.00 0.00 0.00 1.47
1847 2130 9.378551 ACGTACATTCTCATTTTCTTTGCTATA 57.621 29.630 0.00 0.00 0.00 1.31
1848 2131 8.177663 CACGTACATTCTCATTTTCTTTGCTAT 58.822 33.333 0.00 0.00 0.00 2.97
1849 2132 7.386573 TCACGTACATTCTCATTTTCTTTGCTA 59.613 33.333 0.00 0.00 0.00 3.49
1850 2133 6.204688 TCACGTACATTCTCATTTTCTTTGCT 59.795 34.615 0.00 0.00 0.00 3.91
1851 2134 6.370593 TCACGTACATTCTCATTTTCTTTGC 58.629 36.000 0.00 0.00 0.00 3.68
1854 2137 8.665685 GGTTATCACGTACATTCTCATTTTCTT 58.334 33.333 0.00 0.00 0.00 2.52
1855 2138 7.280205 GGGTTATCACGTACATTCTCATTTTCT 59.720 37.037 0.00 0.00 0.00 2.52
1856 2139 7.280205 AGGGTTATCACGTACATTCTCATTTTC 59.720 37.037 0.00 0.00 0.00 2.29
1857 2140 7.065803 CAGGGTTATCACGTACATTCTCATTTT 59.934 37.037 0.00 0.00 0.00 1.82
1858 2141 6.538742 CAGGGTTATCACGTACATTCTCATTT 59.461 38.462 0.00 0.00 0.00 2.32
1859 2142 6.049149 CAGGGTTATCACGTACATTCTCATT 58.951 40.000 0.00 0.00 0.00 2.57
1860 2143 5.362717 TCAGGGTTATCACGTACATTCTCAT 59.637 40.000 0.00 0.00 0.00 2.90
1861 2144 4.707934 TCAGGGTTATCACGTACATTCTCA 59.292 41.667 0.00 0.00 0.00 3.27
1862 2145 5.258456 TCAGGGTTATCACGTACATTCTC 57.742 43.478 0.00 0.00 0.00 2.87
1863 2146 5.871396 ATCAGGGTTATCACGTACATTCT 57.129 39.130 0.00 0.00 0.00 2.40
1864 2147 6.715464 CAAATCAGGGTTATCACGTACATTC 58.285 40.000 0.00 0.00 0.00 2.67
1865 2148 5.065988 GCAAATCAGGGTTATCACGTACATT 59.934 40.000 0.00 0.00 0.00 2.71
1866 2149 4.574828 GCAAATCAGGGTTATCACGTACAT 59.425 41.667 0.00 0.00 0.00 2.29
1867 2150 3.936453 GCAAATCAGGGTTATCACGTACA 59.064 43.478 0.00 0.00 0.00 2.90
1868 2151 3.936453 TGCAAATCAGGGTTATCACGTAC 59.064 43.478 0.00 0.00 0.00 3.67
1869 2152 3.936453 GTGCAAATCAGGGTTATCACGTA 59.064 43.478 0.00 0.00 0.00 3.57
1870 2153 2.747446 GTGCAAATCAGGGTTATCACGT 59.253 45.455 0.00 0.00 0.00 4.49
1871 2154 2.746904 TGTGCAAATCAGGGTTATCACG 59.253 45.455 0.00 0.00 0.00 4.35
1872 2155 4.989279 ATGTGCAAATCAGGGTTATCAC 57.011 40.909 0.00 0.00 0.00 3.06
1873 2156 7.658525 ATTAATGTGCAAATCAGGGTTATCA 57.341 32.000 0.00 0.00 0.00 2.15
1874 2157 7.981225 ACAATTAATGTGCAAATCAGGGTTATC 59.019 33.333 0.00 0.00 41.93 1.75
1875 2158 7.850193 ACAATTAATGTGCAAATCAGGGTTAT 58.150 30.769 0.00 0.00 41.93 1.89
1876 2159 7.238486 ACAATTAATGTGCAAATCAGGGTTA 57.762 32.000 0.00 0.00 41.93 2.85
1877 2160 6.112927 ACAATTAATGTGCAAATCAGGGTT 57.887 33.333 0.00 0.00 41.93 4.11
1878 2161 5.743636 ACAATTAATGTGCAAATCAGGGT 57.256 34.783 0.00 0.00 41.93 4.34
1879 2162 5.163834 GCAACAATTAATGTGCAAATCAGGG 60.164 40.000 12.00 0.00 42.99 4.45
1880 2163 5.163834 GGCAACAATTAATGTGCAAATCAGG 60.164 40.000 16.50 0.00 42.99 3.86
1881 2164 5.640357 AGGCAACAATTAATGTGCAAATCAG 59.360 36.000 16.50 0.00 42.99 2.90
1882 2165 5.408909 CAGGCAACAATTAATGTGCAAATCA 59.591 36.000 16.50 0.00 42.99 2.57
1883 2166 5.163834 CCAGGCAACAATTAATGTGCAAATC 60.164 40.000 16.50 4.23 42.99 2.17
1884 2167 4.696402 CCAGGCAACAATTAATGTGCAAAT 59.304 37.500 16.50 0.00 42.99 2.32
1885 2168 4.063689 CCAGGCAACAATTAATGTGCAAA 58.936 39.130 16.50 0.00 42.99 3.68
1886 2169 3.556633 CCCAGGCAACAATTAATGTGCAA 60.557 43.478 16.50 0.00 42.99 4.08
1887 2170 2.028294 CCCAGGCAACAATTAATGTGCA 60.028 45.455 16.50 0.00 42.99 4.57
1888 2171 2.233431 TCCCAGGCAACAATTAATGTGC 59.767 45.455 9.47 9.47 42.99 4.57
1889 2172 4.021192 ACTTCCCAGGCAACAATTAATGTG 60.021 41.667 0.00 0.00 42.99 3.21
1890 2173 4.021192 CACTTCCCAGGCAACAATTAATGT 60.021 41.667 0.00 0.00 46.82 2.71
1891 2174 4.497300 CACTTCCCAGGCAACAATTAATG 58.503 43.478 0.00 0.00 41.41 1.90
1892 2175 3.055891 GCACTTCCCAGGCAACAATTAAT 60.056 43.478 0.00 0.00 41.41 1.40
1893 2176 2.298729 GCACTTCCCAGGCAACAATTAA 59.701 45.455 0.00 0.00 41.41 1.40
1894 2177 1.892474 GCACTTCCCAGGCAACAATTA 59.108 47.619 0.00 0.00 41.41 1.40
1895 2178 0.681175 GCACTTCCCAGGCAACAATT 59.319 50.000 0.00 0.00 41.41 2.32
1896 2179 0.178953 AGCACTTCCCAGGCAACAAT 60.179 50.000 0.00 0.00 41.41 2.71
1897 2180 0.396974 AAGCACTTCCCAGGCAACAA 60.397 50.000 0.00 0.00 41.41 2.83
1898 2181 0.476338 TAAGCACTTCCCAGGCAACA 59.524 50.000 0.00 0.00 41.41 3.33
1899 2182 1.541588 CTTAAGCACTTCCCAGGCAAC 59.458 52.381 0.00 0.00 0.00 4.17
1900 2183 1.423541 TCTTAAGCACTTCCCAGGCAA 59.576 47.619 0.00 0.00 0.00 4.52
1901 2184 1.003580 CTCTTAAGCACTTCCCAGGCA 59.996 52.381 0.00 0.00 0.00 4.75
1902 2185 1.743996 CTCTTAAGCACTTCCCAGGC 58.256 55.000 0.00 0.00 0.00 4.85
1914 2197 4.367450 GTCCTGCTGTAGATGCTCTTAAG 58.633 47.826 0.00 0.00 0.00 1.85
1915 2198 3.181486 CGTCCTGCTGTAGATGCTCTTAA 60.181 47.826 0.00 0.00 0.00 1.85
1932 2215 2.832129 TCAGATAAGTTTGAGCCGTCCT 59.168 45.455 0.00 0.00 0.00 3.85
1935 2218 3.432252 CGTTTCAGATAAGTTTGAGCCGT 59.568 43.478 0.00 0.00 0.00 5.68
1938 2221 4.434330 CGGACGTTTCAGATAAGTTTGAGC 60.434 45.833 0.00 0.00 0.00 4.26
1946 2229 1.546923 TCTGCCGGACGTTTCAGATAA 59.453 47.619 5.05 0.00 31.35 1.75
1947 2230 1.179152 TCTGCCGGACGTTTCAGATA 58.821 50.000 5.05 0.00 31.35 1.98
1949 2232 0.389817 CATCTGCCGGACGTTTCAGA 60.390 55.000 5.05 7.78 39.54 3.27
1952 2235 0.931005 GATCATCTGCCGGACGTTTC 59.069 55.000 5.05 0.00 0.00 2.78
2000 2284 1.980232 TTTGAGGCGCCCGTCTAGA 60.980 57.895 26.15 2.89 0.00 2.43
2001 2285 1.810030 GTTTGAGGCGCCCGTCTAG 60.810 63.158 26.15 0.00 0.00 2.43
2002 2286 2.263540 GTTTGAGGCGCCCGTCTA 59.736 61.111 26.15 9.53 0.00 2.59
2020 2304 4.016706 CCCGGACGTTTGAGGCCT 62.017 66.667 3.86 3.86 0.00 5.19
2024 2308 2.027625 GTCAGCCCGGACGTTTGAG 61.028 63.158 0.73 0.00 0.00 3.02
2048 2332 8.772250 CCTCATATTTAGGCTGAATATAAGGGA 58.228 37.037 24.19 16.19 33.75 4.20
2053 2337 6.156256 ACGCCCTCATATTTAGGCTGAATATA 59.844 38.462 20.24 10.69 43.48 0.86
2058 2342 2.037251 GACGCCCTCATATTTAGGCTGA 59.963 50.000 0.00 0.00 43.48 4.26
2063 2347 1.000955 AGCGGACGCCCTCATATTTAG 59.999 52.381 13.63 0.00 43.17 1.85
2072 2356 3.900892 CGACATAGCGGACGCCCT 61.901 66.667 13.63 0.00 43.17 5.19
2080 2364 2.430921 GCCGGATCCGACATAGCG 60.431 66.667 35.42 17.27 42.83 4.26
2081 2365 2.048127 GGCCGGATCCGACATAGC 60.048 66.667 35.42 26.89 42.83 2.97
2082 2366 2.207229 TGGGCCGGATCCGACATAG 61.207 63.158 35.42 18.77 42.83 2.23
2083 2367 2.123208 TGGGCCGGATCCGACATA 60.123 61.111 35.42 13.70 42.83 2.29
2084 2368 3.861797 GTGGGCCGGATCCGACAT 61.862 66.667 35.42 0.00 42.83 3.06
2086 2370 4.832608 GTGTGGGCCGGATCCGAC 62.833 72.222 35.42 24.81 42.83 4.79
2088 2372 4.838152 CAGTGTGGGCCGGATCCG 62.838 72.222 27.65 27.65 39.44 4.18
2089 2373 4.489771 CCAGTGTGGGCCGGATCC 62.490 72.222 5.05 6.46 32.67 3.36
2097 2381 4.704833 CGGGTGAGCCAGTGTGGG 62.705 72.222 0.08 0.00 38.19 4.61
2098 2382 3.625897 TCGGGTGAGCCAGTGTGG 61.626 66.667 0.08 0.00 41.55 4.17
2099 2383 2.357517 GTCGGGTGAGCCAGTGTG 60.358 66.667 0.08 0.00 36.17 3.82
2100 2384 3.626924 GGTCGGGTGAGCCAGTGT 61.627 66.667 0.08 0.00 36.61 3.55
2106 2390 1.696097 ATATGTGGGGTCGGGTGAGC 61.696 60.000 0.00 0.00 41.93 4.26
2107 2391 1.712056 TATATGTGGGGTCGGGTGAG 58.288 55.000 0.00 0.00 0.00 3.51
2108 2392 2.409064 ATATATGTGGGGTCGGGTGA 57.591 50.000 0.00 0.00 0.00 4.02
2109 2393 2.290071 GGAATATATGTGGGGTCGGGTG 60.290 54.545 0.00 0.00 0.00 4.61
2110 2394 1.982958 GGAATATATGTGGGGTCGGGT 59.017 52.381 0.00 0.00 0.00 5.28
2111 2395 1.280998 GGGAATATATGTGGGGTCGGG 59.719 57.143 0.00 0.00 0.00 5.14
2112 2396 1.280998 GGGGAATATATGTGGGGTCGG 59.719 57.143 0.00 0.00 0.00 4.79
2113 2397 2.236395 GAGGGGAATATATGTGGGGTCG 59.764 54.545 0.00 0.00 0.00 4.79
2114 2398 3.256704 TGAGGGGAATATATGTGGGGTC 58.743 50.000 0.00 0.00 0.00 4.46
2115 2399 3.377154 TGAGGGGAATATATGTGGGGT 57.623 47.619 0.00 0.00 0.00 4.95
2116 2400 4.080129 CAGATGAGGGGAATATATGTGGGG 60.080 50.000 0.00 0.00 0.00 4.96
2117 2401 4.627255 GCAGATGAGGGGAATATATGTGGG 60.627 50.000 0.00 0.00 0.00 4.61
2118 2402 4.226846 AGCAGATGAGGGGAATATATGTGG 59.773 45.833 0.00 0.00 0.00 4.17
2119 2403 5.426504 GAGCAGATGAGGGGAATATATGTG 58.573 45.833 0.00 0.00 0.00 3.21
2120 2404 4.161189 CGAGCAGATGAGGGGAATATATGT 59.839 45.833 0.00 0.00 0.00 2.29
2121 2405 4.691175 CGAGCAGATGAGGGGAATATATG 58.309 47.826 0.00 0.00 0.00 1.78
2122 2406 3.133721 GCGAGCAGATGAGGGGAATATAT 59.866 47.826 0.00 0.00 0.00 0.86
2123 2407 2.497675 GCGAGCAGATGAGGGGAATATA 59.502 50.000 0.00 0.00 0.00 0.86
2124 2408 1.277557 GCGAGCAGATGAGGGGAATAT 59.722 52.381 0.00 0.00 0.00 1.28
2125 2409 0.681733 GCGAGCAGATGAGGGGAATA 59.318 55.000 0.00 0.00 0.00 1.75
2126 2410 1.449353 GCGAGCAGATGAGGGGAAT 59.551 57.895 0.00 0.00 0.00 3.01
2127 2411 2.735772 GGCGAGCAGATGAGGGGAA 61.736 63.158 0.00 0.00 0.00 3.97
2128 2412 3.157252 GGCGAGCAGATGAGGGGA 61.157 66.667 0.00 0.00 0.00 4.81
2129 2413 4.598894 CGGCGAGCAGATGAGGGG 62.599 72.222 0.00 0.00 0.00 4.79
2130 2414 4.598894 CCGGCGAGCAGATGAGGG 62.599 72.222 9.30 0.00 0.00 4.30
2131 2415 3.531207 TCCGGCGAGCAGATGAGG 61.531 66.667 9.30 0.00 0.00 3.86
2132 2416 2.279120 GTCCGGCGAGCAGATGAG 60.279 66.667 9.30 0.00 0.00 2.90
2133 2417 3.838271 GGTCCGGCGAGCAGATGA 61.838 66.667 9.30 0.00 36.48 2.92
2134 2418 3.664025 TTGGTCCGGCGAGCAGATG 62.664 63.158 9.30 0.00 46.62 2.90
2135 2419 2.954684 TTTGGTCCGGCGAGCAGAT 61.955 57.895 9.30 0.00 46.62 2.90
2136 2420 3.621805 TTTGGTCCGGCGAGCAGA 61.622 61.111 9.30 2.97 46.62 4.26
2137 2421 3.423154 GTTTGGTCCGGCGAGCAG 61.423 66.667 9.30 0.00 46.62 4.24
2139 2423 2.791501 TAAGGTTTGGTCCGGCGAGC 62.792 60.000 9.30 4.93 37.01 5.03
2140 2424 0.739813 CTAAGGTTTGGTCCGGCGAG 60.740 60.000 9.30 0.00 0.00 5.03
2141 2425 1.294138 CTAAGGTTTGGTCCGGCGA 59.706 57.895 9.30 0.00 0.00 5.54
2142 2426 2.396157 GCTAAGGTTTGGTCCGGCG 61.396 63.158 0.00 0.00 0.00 6.46
2143 2427 2.044555 GGCTAAGGTTTGGTCCGGC 61.045 63.158 0.00 0.00 0.00 6.13
2144 2428 0.958876 GTGGCTAAGGTTTGGTCCGG 60.959 60.000 0.00 0.00 0.00 5.14
2145 2429 0.036306 AGTGGCTAAGGTTTGGTCCG 59.964 55.000 0.00 0.00 0.00 4.79
2146 2430 1.613520 GGAGTGGCTAAGGTTTGGTCC 60.614 57.143 0.00 0.00 0.00 4.46
2147 2431 1.613520 GGGAGTGGCTAAGGTTTGGTC 60.614 57.143 0.00 0.00 0.00 4.02
2148 2432 0.404426 GGGAGTGGCTAAGGTTTGGT 59.596 55.000 0.00 0.00 0.00 3.67
2149 2433 0.323451 GGGGAGTGGCTAAGGTTTGG 60.323 60.000 0.00 0.00 0.00 3.28
2150 2434 0.698818 AGGGGAGTGGCTAAGGTTTG 59.301 55.000 0.00 0.00 0.00 2.93
2151 2435 0.992695 GAGGGGAGTGGCTAAGGTTT 59.007 55.000 0.00 0.00 0.00 3.27
2152 2436 0.914902 GGAGGGGAGTGGCTAAGGTT 60.915 60.000 0.00 0.00 0.00 3.50
2153 2437 1.307084 GGAGGGGAGTGGCTAAGGT 60.307 63.158 0.00 0.00 0.00 3.50
2154 2438 2.435693 CGGAGGGGAGTGGCTAAGG 61.436 68.421 0.00 0.00 0.00 2.69
2155 2439 1.677637 GACGGAGGGGAGTGGCTAAG 61.678 65.000 0.00 0.00 0.00 2.18
2156 2440 1.684734 GACGGAGGGGAGTGGCTAA 60.685 63.158 0.00 0.00 0.00 3.09
2157 2441 2.043248 GACGGAGGGGAGTGGCTA 60.043 66.667 0.00 0.00 0.00 3.93
2158 2442 4.316823 TGACGGAGGGGAGTGGCT 62.317 66.667 0.00 0.00 0.00 4.75
2159 2443 4.083862 GTGACGGAGGGGAGTGGC 62.084 72.222 0.00 0.00 0.00 5.01
2160 2444 3.391382 GGTGACGGAGGGGAGTGG 61.391 72.222 0.00 0.00 0.00 4.00
2161 2445 3.391382 GGGTGACGGAGGGGAGTG 61.391 72.222 0.00 0.00 0.00 3.51
2162 2446 3.477956 TTGGGTGACGGAGGGGAGT 62.478 63.158 0.00 0.00 0.00 3.85
2163 2447 2.606519 TTGGGTGACGGAGGGGAG 60.607 66.667 0.00 0.00 0.00 4.30
2164 2448 2.606519 CTTGGGTGACGGAGGGGA 60.607 66.667 0.00 0.00 0.00 4.81
2165 2449 3.717294 CCTTGGGTGACGGAGGGG 61.717 72.222 0.00 0.00 31.46 4.79
2166 2450 4.410400 GCCTTGGGTGACGGAGGG 62.410 72.222 0.00 0.00 34.61 4.30
2167 2451 4.410400 GGCCTTGGGTGACGGAGG 62.410 72.222 0.00 0.00 36.47 4.30
2168 2452 3.636231 TGGCCTTGGGTGACGGAG 61.636 66.667 3.32 0.00 0.00 4.63
2169 2453 3.948719 GTGGCCTTGGGTGACGGA 61.949 66.667 3.32 0.00 0.00 4.69
2171 2455 3.901797 GAGGTGGCCTTGGGTGACG 62.902 68.421 3.32 0.00 31.76 4.35
2172 2456 2.034221 GAGGTGGCCTTGGGTGAC 59.966 66.667 3.32 0.00 31.76 3.67
2173 2457 3.256960 GGAGGTGGCCTTGGGTGA 61.257 66.667 3.32 0.00 31.76 4.02
2174 2458 4.722700 CGGAGGTGGCCTTGGGTG 62.723 72.222 3.32 0.00 31.76 4.61
2190 2474 2.651232 GACGACCGAAGATCGCCG 60.651 66.667 0.00 9.86 38.82 6.46
2191 2475 1.298488 GAGACGACCGAAGATCGCC 60.298 63.158 0.00 0.00 38.82 5.54
2192 2476 1.298488 GGAGACGACCGAAGATCGC 60.298 63.158 0.00 0.00 38.82 4.58
2212 2496 4.424711 ATCCGTTGCCCGCCATGT 62.425 61.111 0.00 0.00 34.38 3.21
2213 2497 3.585990 GATCCGTTGCCCGCCATG 61.586 66.667 0.00 0.00 34.38 3.66
2214 2498 3.797353 AGATCCGTTGCCCGCCAT 61.797 61.111 0.00 0.00 34.38 4.40
2215 2499 4.776322 CAGATCCGTTGCCCGCCA 62.776 66.667 0.00 0.00 34.38 5.69
2216 2500 4.467084 TCAGATCCGTTGCCCGCC 62.467 66.667 0.00 0.00 34.38 6.13
2217 2501 3.195698 GTCAGATCCGTTGCCCGC 61.196 66.667 0.00 0.00 34.38 6.13
2218 2502 1.519455 GAGTCAGATCCGTTGCCCG 60.519 63.158 0.00 0.00 0.00 6.13
2219 2503 1.153349 GGAGTCAGATCCGTTGCCC 60.153 63.158 0.00 0.00 0.00 5.36
2220 2504 1.153349 GGGAGTCAGATCCGTTGCC 60.153 63.158 0.00 0.00 40.56 4.52
2221 2505 0.741221 GTGGGAGTCAGATCCGTTGC 60.741 60.000 0.00 0.00 40.56 4.17
2222 2506 0.108138 GGTGGGAGTCAGATCCGTTG 60.108 60.000 0.00 0.00 40.56 4.10
2223 2507 0.544357 TGGTGGGAGTCAGATCCGTT 60.544 55.000 0.00 0.00 40.56 4.44
2224 2508 0.972983 CTGGTGGGAGTCAGATCCGT 60.973 60.000 0.00 0.00 40.56 4.69
2225 2509 0.972983 ACTGGTGGGAGTCAGATCCG 60.973 60.000 0.00 0.00 40.56 4.18
2226 2510 0.827368 GACTGGTGGGAGTCAGATCC 59.173 60.000 0.00 0.00 41.84 3.36
2227 2511 0.827368 GGACTGGTGGGAGTCAGATC 59.173 60.000 0.00 0.00 43.70 2.75
2228 2512 0.972983 CGGACTGGTGGGAGTCAGAT 60.973 60.000 0.00 0.00 43.70 2.90
2229 2513 1.606601 CGGACTGGTGGGAGTCAGA 60.607 63.158 0.00 0.00 43.70 3.27
2230 2514 2.650116 CCGGACTGGTGGGAGTCAG 61.650 68.421 0.00 0.00 43.70 3.51
2231 2515 2.455960 ATCCGGACTGGTGGGAGTCA 62.456 60.000 6.12 0.00 43.70 3.41
2232 2516 1.677637 GATCCGGACTGGTGGGAGTC 61.678 65.000 6.12 0.00 41.55 3.36
2233 2517 1.686110 GATCCGGACTGGTGGGAGT 60.686 63.158 6.12 0.00 39.52 3.85
2234 2518 2.435693 GGATCCGGACTGGTGGGAG 61.436 68.421 6.12 0.00 39.52 4.30
2235 2519 2.365105 GGATCCGGACTGGTGGGA 60.365 66.667 6.12 0.00 39.52 4.37
2236 2520 3.849951 CGGATCCGGACTGGTGGG 61.850 72.222 26.95 0.00 39.52 4.61
2237 2521 4.530857 GCGGATCCGGACTGGTGG 62.531 72.222 33.98 4.66 40.19 4.61
2238 2522 4.873129 CGCGGATCCGGACTGGTG 62.873 72.222 33.98 8.73 40.19 4.17
2240 2524 4.570663 GTCGCGGATCCGGACTGG 62.571 72.222 33.98 7.01 40.19 4.00
2241 2525 3.518998 AGTCGCGGATCCGGACTG 61.519 66.667 36.55 20.04 43.11 3.51
2242 2526 3.518998 CAGTCGCGGATCCGGACT 61.519 66.667 34.09 34.09 44.41 3.85
2243 2527 4.570663 CCAGTCGCGGATCCGGAC 62.571 72.222 31.82 31.82 40.19 4.79
2247 2531 4.530857 CACCCCAGTCGCGGATCC 62.531 72.222 6.13 0.00 0.00 3.36
2248 2532 3.718210 GACACCCCAGTCGCGGATC 62.718 68.421 6.13 0.00 0.00 3.36
2249 2533 3.771160 GACACCCCAGTCGCGGAT 61.771 66.667 6.13 0.00 0.00 4.18
2251 2535 4.082523 ATGACACCCCAGTCGCGG 62.083 66.667 6.13 0.00 41.41 6.46
2252 2536 2.509336 GATGACACCCCAGTCGCG 60.509 66.667 0.00 0.00 41.41 5.87
2253 2537 2.125106 GGATGACACCCCAGTCGC 60.125 66.667 0.00 0.00 41.41 5.19
2254 2538 2.584608 GGGATGACACCCCAGTCG 59.415 66.667 0.00 0.00 43.81 4.18
2270 2554 2.124570 CTCCTCCAACCCGCATGG 60.125 66.667 0.00 0.00 39.41 3.66
2271 2555 2.124570 CCTCCTCCAACCCGCATG 60.125 66.667 0.00 0.00 0.00 4.06
2272 2556 4.115199 GCCTCCTCCAACCCGCAT 62.115 66.667 0.00 0.00 0.00 4.73
2274 2558 4.344865 TTGCCTCCTCCAACCCGC 62.345 66.667 0.00 0.00 0.00 6.13
2275 2559 2.359975 GTTGCCTCCTCCAACCCG 60.360 66.667 0.00 0.00 37.25 5.28
2276 2560 2.359975 CGTTGCCTCCTCCAACCC 60.360 66.667 0.00 0.00 39.42 4.11
2277 2561 2.359975 CCGTTGCCTCCTCCAACC 60.360 66.667 0.00 0.00 39.42 3.77
2278 2562 1.671379 GACCGTTGCCTCCTCCAAC 60.671 63.158 0.00 0.00 39.26 3.77
2279 2563 2.747686 GACCGTTGCCTCCTCCAA 59.252 61.111 0.00 0.00 0.00 3.53
2280 2564 3.691342 CGACCGTTGCCTCCTCCA 61.691 66.667 0.00 0.00 0.00 3.86
2281 2565 3.644399 GACGACCGTTGCCTCCTCC 62.644 68.421 0.00 0.00 0.00 4.30
2282 2566 2.126031 GACGACCGTTGCCTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
2283 2567 3.692406 GGACGACCGTTGCCTCCT 61.692 66.667 0.00 0.00 0.00 3.69
2293 2577 2.740714 GAGTGCAATGCGGACGACC 61.741 63.158 0.00 0.00 41.69 4.79
2294 2578 2.740714 GGAGTGCAATGCGGACGAC 61.741 63.158 0.00 0.00 41.69 4.34
2295 2579 2.434185 GGAGTGCAATGCGGACGA 60.434 61.111 0.00 0.00 41.69 4.20
2296 2580 3.853330 CGGAGTGCAATGCGGACG 61.853 66.667 20.64 0.00 41.69 4.79
2297 2581 4.166011 GCGGAGTGCAATGCGGAC 62.166 66.667 28.35 9.99 45.45 4.79
2338 2622 2.493907 GGATAGATCCTGCCGTCGGC 62.494 65.000 29.52 29.52 43.73 5.54
2339 2623 1.587054 GGATAGATCCTGCCGTCGG 59.413 63.158 6.99 6.99 43.73 4.79
2349 2633 1.337071 TGGAGTCGCGTTGGATAGATC 59.663 52.381 5.77 0.00 0.00 2.75
2350 2634 1.399714 TGGAGTCGCGTTGGATAGAT 58.600 50.000 5.77 0.00 0.00 1.98
2351 2635 1.399714 ATGGAGTCGCGTTGGATAGA 58.600 50.000 5.77 0.00 0.00 1.98
2352 2636 2.922758 GCTATGGAGTCGCGTTGGATAG 60.923 54.545 5.77 8.09 0.00 2.08
2353 2637 1.000607 GCTATGGAGTCGCGTTGGATA 60.001 52.381 5.77 0.00 0.00 2.59
2354 2638 0.249489 GCTATGGAGTCGCGTTGGAT 60.249 55.000 5.77 0.00 0.00 3.41
2355 2639 1.141019 GCTATGGAGTCGCGTTGGA 59.859 57.895 5.77 0.00 0.00 3.53
2356 2640 2.230940 CGCTATGGAGTCGCGTTGG 61.231 63.158 5.77 0.00 41.78 3.77
2357 2641 3.299585 CGCTATGGAGTCGCGTTG 58.700 61.111 5.77 0.00 41.78 4.10
2363 2647 3.121019 AGCCGACGCTATGGAGTC 58.879 61.111 2.77 2.77 46.08 3.36
2373 2657 1.641123 AATTGCCCGTTAAGCCGACG 61.641 55.000 0.00 0.00 40.05 5.12
2374 2658 0.179174 CAATTGCCCGTTAAGCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
2375 2659 0.321741 TCAATTGCCCGTTAAGCCGA 60.322 50.000 0.00 0.00 0.00 5.54
2376 2660 0.523966 TTCAATTGCCCGTTAAGCCG 59.476 50.000 0.00 0.00 0.00 5.52
2377 2661 2.481276 GGATTCAATTGCCCGTTAAGCC 60.481 50.000 0.00 0.00 0.00 4.35
2378 2662 2.427095 AGGATTCAATTGCCCGTTAAGC 59.573 45.455 0.00 0.00 0.00 3.09
2379 2663 3.947834 AGAGGATTCAATTGCCCGTTAAG 59.052 43.478 0.00 0.00 0.00 1.85
2380 2664 3.694072 CAGAGGATTCAATTGCCCGTTAA 59.306 43.478 0.00 0.00 0.00 2.01
2381 2665 3.278574 CAGAGGATTCAATTGCCCGTTA 58.721 45.455 0.00 0.00 0.00 3.18
2382 2666 2.094675 CAGAGGATTCAATTGCCCGTT 58.905 47.619 0.00 0.00 0.00 4.44
2383 2667 1.683011 CCAGAGGATTCAATTGCCCGT 60.683 52.381 0.00 0.00 0.00 5.28
2384 2668 1.027357 CCAGAGGATTCAATTGCCCG 58.973 55.000 0.00 0.00 0.00 6.13
2385 2669 1.406903 CCCAGAGGATTCAATTGCCC 58.593 55.000 0.00 2.00 33.47 5.36
2386 2670 1.342374 ACCCCAGAGGATTCAATTGCC 60.342 52.381 0.00 0.00 39.89 4.52
2387 2671 2.149973 ACCCCAGAGGATTCAATTGC 57.850 50.000 0.00 0.00 39.89 3.56
2388 2672 3.700538 TCAACCCCAGAGGATTCAATTG 58.299 45.455 0.00 0.00 39.89 2.32
2389 2673 4.284178 CATCAACCCCAGAGGATTCAATT 58.716 43.478 0.00 0.00 39.89 2.32
2390 2674 3.907221 CATCAACCCCAGAGGATTCAAT 58.093 45.455 0.00 0.00 39.89 2.57
2391 2675 2.621407 GCATCAACCCCAGAGGATTCAA 60.621 50.000 0.00 0.00 39.89 2.69
2392 2676 1.064463 GCATCAACCCCAGAGGATTCA 60.064 52.381 0.00 0.00 39.89 2.57
2393 2677 1.685148 GCATCAACCCCAGAGGATTC 58.315 55.000 0.00 0.00 39.89 2.52
2394 2678 0.107017 CGCATCAACCCCAGAGGATT 60.107 55.000 0.00 0.00 39.89 3.01
2395 2679 1.528824 CGCATCAACCCCAGAGGAT 59.471 57.895 0.00 0.00 39.89 3.24
2396 2680 2.669133 CCGCATCAACCCCAGAGGA 61.669 63.158 0.00 0.00 39.89 3.71
2397 2681 2.124570 CCGCATCAACCCCAGAGG 60.125 66.667 0.00 0.00 43.78 3.69
2398 2682 2.825836 GCCGCATCAACCCCAGAG 60.826 66.667 0.00 0.00 0.00 3.35
2399 2683 3.626996 CTGCCGCATCAACCCCAGA 62.627 63.158 0.00 0.00 0.00 3.86
2400 2684 3.136123 CTGCCGCATCAACCCCAG 61.136 66.667 0.00 0.00 0.00 4.45
2424 2708 0.250901 GACTTCCTCCTTTGCAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
2432 2716 1.517832 CGCGGATGACTTCCTCCTT 59.482 57.895 0.00 0.00 42.99 3.36
2433 2717 3.082579 GCGCGGATGACTTCCTCCT 62.083 63.158 8.83 0.00 42.99 3.69
2434 2718 2.586357 GCGCGGATGACTTCCTCC 60.586 66.667 8.83 0.00 42.99 4.30
2459 2743 2.174349 CTGTTGCCGCTTCTTCGC 59.826 61.111 0.00 0.00 0.00 4.70
2460 2744 1.493311 GTCTGTTGCCGCTTCTTCG 59.507 57.895 0.00 0.00 0.00 3.79
2467 2751 2.248431 GTGTTCGTCTGTTGCCGC 59.752 61.111 0.00 0.00 0.00 6.53
2468 2752 2.544359 CGTGTTCGTCTGTTGCCG 59.456 61.111 0.00 0.00 0.00 5.69
2469 2753 2.248431 GCGTGTTCGTCTGTTGCC 59.752 61.111 0.00 0.00 39.49 4.52
2473 2757 3.327754 GCGTGCGTGTTCGTCTGT 61.328 61.111 0.00 0.00 39.49 3.41
2530 2814 1.644337 TCCTCCTTAGGTAGCAGTCCA 59.356 52.381 0.00 0.00 44.09 4.02
2538 2822 3.204831 GTCCTCCTTCTCCTCCTTAGGTA 59.795 52.174 0.00 0.00 44.09 3.08
2542 2826 3.181410 TGTTGTCCTCCTTCTCCTCCTTA 60.181 47.826 0.00 0.00 0.00 2.69
2549 2833 1.797025 CCGTTGTTGTCCTCCTTCTC 58.203 55.000 0.00 0.00 0.00 2.87
2561 2845 2.665185 GCTGTCCTCGCCGTTGTT 60.665 61.111 0.00 0.00 0.00 2.83
2562 2846 3.575351 GAGCTGTCCTCGCCGTTGT 62.575 63.158 0.00 0.00 0.00 3.32
2564 2848 4.070552 GGAGCTGTCCTCGCCGTT 62.071 66.667 0.00 0.00 41.71 4.44
2578 2863 1.337635 GCAATAGGGATCGAGCTGGAG 60.338 57.143 4.31 0.00 0.00 3.86
2582 2867 0.315568 GACGCAATAGGGATCGAGCT 59.684 55.000 0.00 0.00 0.00 4.09
2609 2894 3.009301 CGTCCTTATCGCGGAAGTATT 57.991 47.619 6.13 0.00 31.13 1.89
2610 2895 2.701073 CGTCCTTATCGCGGAAGTAT 57.299 50.000 6.13 0.00 31.13 2.12
2622 2907 2.125673 GCGCTCTTGCCGTCCTTA 60.126 61.111 0.00 0.00 35.36 2.69
2630 2915 3.130160 CCTTCCCAGCGCTCTTGC 61.130 66.667 7.13 0.00 0.00 4.01
2635 2920 4.729918 CTTGCCCTTCCCAGCGCT 62.730 66.667 2.64 2.64 0.00 5.92
2640 2925 2.612493 GCTACCCTTGCCCTTCCCA 61.612 63.158 0.00 0.00 0.00 4.37
2647 2932 3.043999 ATCCACGGCTACCCTTGCC 62.044 63.158 0.00 0.00 46.42 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.