Multiple sequence alignment - TraesCS2D01G384800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G384800 chr2D 100.000 2711 0 0 1 2711 489592513 489595223 0.000000e+00 5007.0
1 TraesCS2D01G384800 chr2D 93.202 662 31 10 844 1496 489637341 489637997 0.000000e+00 961.0
2 TraesCS2D01G384800 chr2D 90.157 447 28 8 1073 1516 489574390 489574823 3.920000e-158 568.0
3 TraesCS2D01G384800 chr2D 89.318 337 25 5 366 701 489636508 489636834 1.940000e-111 412.0
4 TraesCS2D01G384800 chr2D 94.186 258 12 2 1534 1788 489574762 489575019 9.100000e-105 390.0
5 TraesCS2D01G384800 chr2D 93.989 183 11 0 2370 2552 489575022 489575204 7.390000e-71 278.0
6 TraesCS2D01G384800 chr2D 89.744 195 17 3 288 480 489592621 489592814 2.080000e-61 246.0
7 TraesCS2D01G384800 chr2D 95.425 153 7 0 2559 2711 489638434 489638586 7.500000e-61 244.0
8 TraesCS2D01G384800 chr2D 91.429 70 6 0 1534 1603 489593970 489594039 2.220000e-16 97.1
9 TraesCS2D01G384800 chr2D 91.429 70 6 0 1458 1527 489594046 489594115 2.220000e-16 97.1
10 TraesCS2D01G384800 chr2D 82.828 99 9 7 1694 1788 489638157 489638251 6.220000e-12 82.4
11 TraesCS2D01G384800 chr2B 88.961 1078 72 25 748 1788 573183612 573184679 0.000000e+00 1288.0
12 TraesCS2D01G384800 chr2B 89.368 950 56 23 850 1788 573186506 573187421 0.000000e+00 1153.0
13 TraesCS2D01G384800 chr2B 91.987 599 37 8 850 1442 573197984 573198577 0.000000e+00 830.0
14 TraesCS2D01G384800 chr2B 89.594 394 36 5 298 689 573197361 573197751 1.870000e-136 496.0
15 TraesCS2D01G384800 chr2B 89.114 395 35 8 298 689 573185884 573186273 4.060000e-133 484.0
16 TraesCS2D01G384800 chr2B 88.767 365 16 13 2370 2711 573198972 573199334 8.970000e-115 424.0
17 TraesCS2D01G384800 chr2B 89.811 265 18 8 879 1141 573182304 573182561 5.590000e-87 331.0
18 TraesCS2D01G384800 chr2B 91.667 192 12 3 2372 2559 573187426 573187617 2.070000e-66 263.0
19 TraesCS2D01G384800 chr2B 96.471 85 0 2 1705 1788 573198887 573198969 1.310000e-28 137.0
20 TraesCS2D01G384800 chr2A 89.617 915 49 20 847 1747 633222774 633223656 0.000000e+00 1122.0
21 TraesCS2D01G384800 chr2A 91.048 458 23 7 1073 1525 633228680 633229124 1.070000e-168 603.0
22 TraesCS2D01G384800 chr2A 90.102 394 33 6 298 688 633227946 633228336 8.660000e-140 507.0
23 TraesCS2D01G384800 chr2A 88.547 358 25 4 2370 2711 633223687 633224044 1.160000e-113 420.0
24 TraesCS2D01G384800 chr2A 88.154 363 20 8 2370 2711 633229283 633229643 6.990000e-111 411.0
25 TraesCS2D01G384800 chr2A 85.323 402 51 7 1975 2371 118664872 118665270 2.510000e-110 409.0
26 TraesCS2D01G384800 chr2A 88.991 218 13 7 831 1042 633228489 633228701 2.680000e-65 259.0
27 TraesCS2D01G384800 chr2A 78.333 180 26 12 1613 1788 633229110 633229280 1.330000e-18 104.0
28 TraesCS2D01G384800 chr2A 85.897 78 11 0 1450 1527 633223435 633223512 1.730000e-12 84.2
29 TraesCS2D01G384800 chr2A 100.000 30 0 0 1759 1788 633223655 633223684 3.770000e-04 56.5
30 TraesCS2D01G384800 chr5D 85.608 403 50 7 1974 2372 409448494 409448096 1.500000e-112 416.0
31 TraesCS2D01G384800 chr5D 86.111 324 39 6 1974 2294 7021689 7021369 7.190000e-91 344.0
32 TraesCS2D01G384800 chr5D 83.422 374 51 10 1974 2341 306251714 306251346 1.200000e-88 337.0
33 TraesCS2D01G384800 chr5D 96.364 55 2 0 1920 1974 503253351 503253297 1.030000e-14 91.6
34 TraesCS2D01G384800 chr5D 94.737 57 2 1 1920 1975 196431474 196431418 1.340000e-13 87.9
35 TraesCS2D01G384800 chr6A 83.247 388 55 8 1992 2371 16407439 16407824 5.560000e-92 348.0
36 TraesCS2D01G384800 chr6A 94.737 57 2 1 1920 1975 408775103 408775047 1.340000e-13 87.9
37 TraesCS2D01G384800 chr3D 82.915 398 50 15 1974 2366 548716534 548716150 2.580000e-90 342.0
38 TraesCS2D01G384800 chrUn 82.500 400 59 9 1974 2369 316984599 316984991 9.300000e-90 340.0
39 TraesCS2D01G384800 chrUn 82.500 400 59 9 1974 2369 346550978 346550586 9.300000e-90 340.0
40 TraesCS2D01G384800 chrUn 96.491 57 1 1 1920 1975 115198635 115198691 2.870000e-15 93.5
41 TraesCS2D01G384800 chrUn 94.737 57 2 1 1920 1975 371790985 371790929 1.340000e-13 87.9
42 TraesCS2D01G384800 chr5B 81.931 404 54 17 1974 2370 647969244 647968853 9.360000e-85 324.0
43 TraesCS2D01G384800 chr5B 80.965 373 58 9 301 665 388679441 388679808 1.590000e-72 283.0
44 TraesCS2D01G384800 chr1B 79.553 313 48 14 374 678 687669446 687669750 2.740000e-50 209.0
45 TraesCS2D01G384800 chr1B 80.349 229 38 7 452 677 575139652 575139428 1.670000e-37 167.0
46 TraesCS2D01G384800 chr5A 78.655 342 49 22 348 677 459547010 459546681 3.540000e-49 206.0
47 TraesCS2D01G384800 chr5A 96.491 57 1 1 1920 1975 482023442 482023498 2.870000e-15 93.5
48 TraesCS2D01G384800 chr3B 81.328 241 32 10 413 651 422010554 422010783 1.660000e-42 183.0
49 TraesCS2D01G384800 chr3B 96.491 57 1 1 1920 1975 201554852 201554908 2.870000e-15 93.5
50 TraesCS2D01G384800 chr7B 96.491 57 1 1 1920 1975 105211422 105211366 2.870000e-15 93.5
51 TraesCS2D01G384800 chr1D 96.491 57 1 1 1920 1975 13104039 13103983 2.870000e-15 93.5
52 TraesCS2D01G384800 chr1D 95.349 43 1 1 788 829 451979458 451979500 1.740000e-07 67.6
53 TraesCS2D01G384800 chr6B 91.304 69 3 3 767 833 603893871 603893938 1.030000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G384800 chr2D 489592513 489595223 2710 False 1361.80 5007 93.150500 1 2711 4 chr2D.!!$F2 2710
1 TraesCS2D01G384800 chr2D 489636508 489638586 2078 False 424.85 961 90.193250 366 2711 4 chr2D.!!$F3 2345
2 TraesCS2D01G384800 chr2D 489574390 489575204 814 False 412.00 568 92.777333 1073 2552 3 chr2D.!!$F1 1479
3 TraesCS2D01G384800 chr2B 573182304 573187617 5313 False 703.80 1288 89.784200 298 2559 5 chr2B.!!$F1 2261
4 TraesCS2D01G384800 chr2B 573197361 573199334 1973 False 471.75 830 91.704750 298 2711 4 chr2B.!!$F2 2413
5 TraesCS2D01G384800 chr2A 633222774 633229643 6869 False 396.30 1122 88.965444 298 2711 9 chr2A.!!$F2 2413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 7752 0.509929 GTCCGTAACCACTTTGCGAC 59.49 55.0 0.0 0.0 45.33 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 8944 0.106318 GGCCTCCATGGAGCTTCAAT 60.106 55.0 32.97 0.0 40.69 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.953667 TGGCAATAAACATTTCTTGCACA 58.046 34.783 21.68 16.13 46.06 4.57
26 27 5.409214 GGCAATAAACATTTCTTGCACACAT 59.591 36.000 21.68 0.00 46.06 3.21
27 28 6.073112 GGCAATAAACATTTCTTGCACACATT 60.073 34.615 21.68 0.00 46.06 2.71
28 29 6.793203 GCAATAAACATTTCTTGCACACATTG 59.207 34.615 17.66 5.06 44.63 2.82
29 30 7.518689 GCAATAAACATTTCTTGCACACATTGT 60.519 33.333 17.66 0.00 44.63 2.71
30 31 8.976471 CAATAAACATTTCTTGCACACATTGTA 58.024 29.630 0.00 0.00 0.00 2.41
32 33 5.512753 ACATTTCTTGCACACATTGTACA 57.487 34.783 0.00 0.00 0.00 2.90
33 34 6.088016 ACATTTCTTGCACACATTGTACAT 57.912 33.333 0.00 0.00 0.00 2.29
35 36 6.985645 ACATTTCTTGCACACATTGTACATTT 59.014 30.769 0.00 0.00 0.00 2.32
36 37 7.495279 ACATTTCTTGCACACATTGTACATTTT 59.505 29.630 0.00 0.00 0.00 1.82
37 38 7.840342 TTTCTTGCACACATTGTACATTTTT 57.160 28.000 0.00 0.00 0.00 1.94
221 222 9.793252 AATACTTGATGAGCATTTTTCATACAC 57.207 29.630 0.00 0.00 35.50 2.90
222 223 7.218228 ACTTGATGAGCATTTTTCATACACA 57.782 32.000 0.00 0.00 35.50 3.72
225 226 8.468720 TTGATGAGCATTTTTCATACACATTG 57.531 30.769 0.00 0.00 35.50 2.82
227 228 8.738106 TGATGAGCATTTTTCATACACATTGTA 58.262 29.630 0.00 0.00 37.24 2.41
228 229 9.740239 GATGAGCATTTTTCATACACATTGTAT 57.260 29.630 0.00 0.00 43.81 2.29
230 231 9.926158 TGAGCATTTTTCATACACATTGTATTT 57.074 25.926 0.00 0.00 40.40 1.40
232 233 9.709495 AGCATTTTTCATACACATTGTATTTGT 57.291 25.926 0.00 0.00 40.40 2.83
387 6771 9.487790 TTTGGCCTTTTTAAAATACTTGATGAG 57.512 29.630 3.32 0.00 0.00 2.90
465 6851 9.974980 AACCTTTTTATGTACACATTTAACAGG 57.025 29.630 0.00 14.36 37.76 4.00
477 6863 6.701400 ACACATTTAACAGGTTTCAAATGCTC 59.299 34.615 15.29 0.00 40.43 4.26
701 7089 1.305219 ACTGGTGTGTGTGTGTGTGC 61.305 55.000 0.00 0.00 0.00 4.57
703 7091 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
704 7092 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
762 7475 4.469469 AAGAAACTCCCCTCAAAATGGA 57.531 40.909 0.00 0.00 0.00 3.41
786 7499 1.536073 CCCAGTCTCGTGCTCCTCAA 61.536 60.000 0.00 0.00 0.00 3.02
897 7657 1.676529 TCTCATCGACCACTCGGAATC 59.323 52.381 0.00 0.00 40.58 2.52
924 7688 3.214123 CCGATACCGTGCCGAGGA 61.214 66.667 0.00 0.00 0.00 3.71
926 7690 2.728817 GATACCGTGCCGAGGAGG 59.271 66.667 0.00 0.00 44.97 4.30
933 7701 1.153349 GTGCCGAGGAGGTTCCATC 60.153 63.158 0.00 0.00 43.70 3.51
940 7708 4.681781 GCCGAGGAGGTTCCATCATATATG 60.682 50.000 6.36 6.36 43.70 1.78
983 7752 0.509929 GTCCGTAACCACTTTGCGAC 59.490 55.000 0.00 0.00 45.33 5.19
1152 7926 4.742201 GACGCAGAAGCCGGAGCA 62.742 66.667 5.05 0.00 43.56 4.26
1272 8046 2.436824 GGCCAAGAAGGAGGACGC 60.437 66.667 0.00 0.00 41.22 5.19
1414 8188 1.738099 AGCTCGGTCACGTTGATGC 60.738 57.895 0.00 0.00 41.85 3.91
1426 8200 1.838112 GTTGATGCCACCTCCAATCA 58.162 50.000 0.00 0.00 0.00 2.57
1435 8209 2.290896 CCACCTCCAATCAAGGCAGTAA 60.291 50.000 0.00 0.00 37.42 2.24
1436 8210 3.624777 CACCTCCAATCAAGGCAGTAAT 58.375 45.455 0.00 0.00 37.42 1.89
1442 8216 2.246719 ATCAAGGCAGTAATCCTCGC 57.753 50.000 0.00 0.00 32.45 5.03
1505 8284 5.300539 TGGACTCTAGAGATGTATTGCTCAC 59.699 44.000 26.57 5.12 33.62 3.51
1522 8301 5.233225 TGCTCACAGAAAAGTGTAGAGATG 58.767 41.667 0.00 0.00 40.37 2.90
1526 8305 7.009999 GCTCACAGAAAAGTGTAGAGATGTATG 59.990 40.741 0.00 0.00 40.37 2.39
1532 8311 2.968574 AGTGTAGAGATGTATGGCCTGG 59.031 50.000 3.32 0.00 0.00 4.45
1548 8327 2.586792 GGCATCTTGTCGAGGGCT 59.413 61.111 0.00 0.00 44.53 5.19
1549 8328 1.817099 GGCATCTTGTCGAGGGCTG 60.817 63.158 0.00 0.00 44.53 4.85
1550 8329 1.078848 GCATCTTGTCGAGGGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
1551 8330 0.175760 GCATCTTGTCGAGGGCTGTA 59.824 55.000 0.00 0.00 0.00 2.74
1552 8331 1.405526 GCATCTTGTCGAGGGCTGTAA 60.406 52.381 0.00 0.00 0.00 2.41
1553 8332 2.743183 GCATCTTGTCGAGGGCTGTAAT 60.743 50.000 0.00 0.00 0.00 1.89
1554 8333 3.535561 CATCTTGTCGAGGGCTGTAATT 58.464 45.455 0.00 0.00 0.00 1.40
1555 8334 2.972625 TCTTGTCGAGGGCTGTAATTG 58.027 47.619 0.00 0.00 0.00 2.32
1556 8335 2.565391 TCTTGTCGAGGGCTGTAATTGA 59.435 45.455 0.00 0.00 0.00 2.57
1557 8336 3.197766 TCTTGTCGAGGGCTGTAATTGAT 59.802 43.478 0.00 0.00 0.00 2.57
1558 8337 2.905075 TGTCGAGGGCTGTAATTGATG 58.095 47.619 0.00 0.00 0.00 3.07
1559 8338 2.213499 GTCGAGGGCTGTAATTGATGG 58.787 52.381 0.00 0.00 0.00 3.51
1560 8339 2.115427 TCGAGGGCTGTAATTGATGGA 58.885 47.619 0.00 0.00 0.00 3.41
1565 8344 3.118112 AGGGCTGTAATTGATGGACTCTG 60.118 47.826 0.00 0.00 0.00 3.35
1667 8446 7.153217 TGTAACGAAGTGTAGAGATTGATCA 57.847 36.000 0.00 0.00 45.00 2.92
1788 8764 2.249139 GACCCCAGTTCAGTAGACAGT 58.751 52.381 0.00 0.00 0.00 3.55
1790 8766 1.338200 CCCCAGTTCAGTAGACAGTGC 60.338 57.143 0.00 0.00 0.00 4.40
1791 8767 1.344438 CCCAGTTCAGTAGACAGTGCA 59.656 52.381 0.00 0.00 0.00 4.57
1792 8768 2.224281 CCCAGTTCAGTAGACAGTGCAA 60.224 50.000 0.00 0.00 0.00 4.08
1793 8769 3.466836 CCAGTTCAGTAGACAGTGCAAA 58.533 45.455 0.00 0.00 0.00 3.68
1794 8770 3.876914 CCAGTTCAGTAGACAGTGCAAAA 59.123 43.478 0.00 0.00 0.00 2.44
1795 8771 4.516698 CCAGTTCAGTAGACAGTGCAAAAT 59.483 41.667 0.00 0.00 0.00 1.82
1796 8772 5.446709 CAGTTCAGTAGACAGTGCAAAATG 58.553 41.667 0.00 0.00 0.00 2.32
1797 8773 4.023707 AGTTCAGTAGACAGTGCAAAATGC 60.024 41.667 0.00 0.00 45.29 3.56
1817 8793 2.753296 CAAAATTGCTTTTCGAGGCCA 58.247 42.857 5.01 0.00 32.21 5.36
1818 8794 2.730550 AAATTGCTTTTCGAGGCCAG 57.269 45.000 5.01 0.00 0.00 4.85
1819 8795 1.909700 AATTGCTTTTCGAGGCCAGA 58.090 45.000 5.01 0.00 0.00 3.86
1820 8796 1.457346 ATTGCTTTTCGAGGCCAGAG 58.543 50.000 5.01 0.00 0.00 3.35
1821 8797 0.108585 TTGCTTTTCGAGGCCAGAGT 59.891 50.000 5.01 0.00 0.00 3.24
1822 8798 0.108585 TGCTTTTCGAGGCCAGAGTT 59.891 50.000 5.01 0.00 0.00 3.01
1823 8799 1.346395 TGCTTTTCGAGGCCAGAGTTA 59.654 47.619 5.01 0.00 0.00 2.24
1824 8800 2.224426 TGCTTTTCGAGGCCAGAGTTAA 60.224 45.455 5.01 0.00 0.00 2.01
1825 8801 3.010420 GCTTTTCGAGGCCAGAGTTAAT 58.990 45.455 5.01 0.00 0.00 1.40
1826 8802 3.440522 GCTTTTCGAGGCCAGAGTTAATT 59.559 43.478 5.01 0.00 0.00 1.40
1827 8803 4.082733 GCTTTTCGAGGCCAGAGTTAATTT 60.083 41.667 5.01 0.00 0.00 1.82
1828 8804 5.622770 TTTTCGAGGCCAGAGTTAATTTC 57.377 39.130 5.01 0.00 0.00 2.17
1829 8805 3.261981 TCGAGGCCAGAGTTAATTTCC 57.738 47.619 5.01 0.00 0.00 3.13
1830 8806 2.838202 TCGAGGCCAGAGTTAATTTCCT 59.162 45.455 5.01 0.00 0.00 3.36
1831 8807 3.263425 TCGAGGCCAGAGTTAATTTCCTT 59.737 43.478 5.01 0.00 0.00 3.36
1832 8808 4.010349 CGAGGCCAGAGTTAATTTCCTTT 58.990 43.478 5.01 0.00 0.00 3.11
1833 8809 4.459337 CGAGGCCAGAGTTAATTTCCTTTT 59.541 41.667 5.01 0.00 0.00 2.27
1834 8810 5.619981 CGAGGCCAGAGTTAATTTCCTTTTG 60.620 44.000 5.01 0.00 0.00 2.44
1835 8811 5.147767 AGGCCAGAGTTAATTTCCTTTTGT 58.852 37.500 5.01 0.00 0.00 2.83
1836 8812 6.311735 AGGCCAGAGTTAATTTCCTTTTGTA 58.688 36.000 5.01 0.00 0.00 2.41
1837 8813 6.434340 AGGCCAGAGTTAATTTCCTTTTGTAG 59.566 38.462 5.01 0.00 0.00 2.74
1838 8814 6.433093 GGCCAGAGTTAATTTCCTTTTGTAGA 59.567 38.462 0.00 0.00 0.00 2.59
1839 8815 7.122799 GGCCAGAGTTAATTTCCTTTTGTAGAT 59.877 37.037 0.00 0.00 0.00 1.98
1840 8816 8.184848 GCCAGAGTTAATTTCCTTTTGTAGATC 58.815 37.037 0.00 0.00 0.00 2.75
1841 8817 8.678199 CCAGAGTTAATTTCCTTTTGTAGATCC 58.322 37.037 0.00 0.00 0.00 3.36
1842 8818 9.454859 CAGAGTTAATTTCCTTTTGTAGATCCT 57.545 33.333 0.00 0.00 0.00 3.24
1857 8833 9.938280 TTTGTAGATCCTTTTCTAATTCTTCGA 57.062 29.630 0.00 0.00 30.25 3.71
1861 8837 7.924940 AGATCCTTTTCTAATTCTTCGATTGC 58.075 34.615 0.00 0.00 0.00 3.56
1862 8838 7.772757 AGATCCTTTTCTAATTCTTCGATTGCT 59.227 33.333 0.00 0.00 0.00 3.91
1863 8839 7.308782 TCCTTTTCTAATTCTTCGATTGCTC 57.691 36.000 0.00 0.00 0.00 4.26
1864 8840 6.316390 TCCTTTTCTAATTCTTCGATTGCTCC 59.684 38.462 0.00 0.00 0.00 4.70
1865 8841 6.317391 CCTTTTCTAATTCTTCGATTGCTCCT 59.683 38.462 0.00 0.00 0.00 3.69
1866 8842 7.148171 CCTTTTCTAATTCTTCGATTGCTCCTT 60.148 37.037 0.00 0.00 0.00 3.36
1867 8843 7.687941 TTTCTAATTCTTCGATTGCTCCTTT 57.312 32.000 0.00 0.00 0.00 3.11
1868 8844 7.687941 TTCTAATTCTTCGATTGCTCCTTTT 57.312 32.000 0.00 0.00 0.00 2.27
1869 8845 7.687941 TCTAATTCTTCGATTGCTCCTTTTT 57.312 32.000 0.00 0.00 0.00 1.94
1907 8883 8.956446 TTTGGGAAATAGAATCTTTTCCTTCT 57.044 30.769 23.25 6.91 46.61 2.85
1908 8884 8.956446 TTGGGAAATAGAATCTTTTCCTTCTT 57.044 30.769 23.25 0.00 46.61 2.52
1909 8885 8.956446 TGGGAAATAGAATCTTTTCCTTCTTT 57.044 30.769 23.25 0.00 46.61 2.52
1910 8886 9.379770 TGGGAAATAGAATCTTTTCCTTCTTTT 57.620 29.630 23.25 4.12 46.61 2.27
1982 8958 8.908786 TTAGTTCTATAATTGAAGCTCCATGG 57.091 34.615 4.97 4.97 0.00 3.66
1983 8959 7.141758 AGTTCTATAATTGAAGCTCCATGGA 57.858 36.000 15.27 15.27 0.00 3.41
1984 8960 7.222872 AGTTCTATAATTGAAGCTCCATGGAG 58.777 38.462 33.73 33.73 44.56 3.86
1985 8961 6.119240 TCTATAATTGAAGCTCCATGGAGG 57.881 41.667 36.92 21.77 42.19 4.30
1986 8962 1.772836 AATTGAAGCTCCATGGAGGC 58.227 50.000 36.92 28.76 42.19 4.70
1987 8963 0.106318 ATTGAAGCTCCATGGAGGCC 60.106 55.000 36.92 23.97 42.19 5.19
1988 8964 1.210204 TTGAAGCTCCATGGAGGCCT 61.210 55.000 36.92 25.64 42.19 5.19
1989 8965 1.148048 GAAGCTCCATGGAGGCCTC 59.852 63.158 36.92 25.59 42.19 4.70
2002 8978 3.339253 GAGGCCTCCAAATGCAAAATT 57.661 42.857 23.19 0.00 0.00 1.82
2003 8979 3.264947 GAGGCCTCCAAATGCAAAATTC 58.735 45.455 23.19 0.00 0.00 2.17
2004 8980 2.638855 AGGCCTCCAAATGCAAAATTCA 59.361 40.909 0.00 0.00 0.00 2.57
2005 8981 3.072768 AGGCCTCCAAATGCAAAATTCAA 59.927 39.130 0.00 0.00 0.00 2.69
2006 8982 3.819902 GGCCTCCAAATGCAAAATTCAAA 59.180 39.130 0.00 0.00 0.00 2.69
2007 8983 4.277921 GGCCTCCAAATGCAAAATTCAAAA 59.722 37.500 0.00 0.00 0.00 2.44
2008 8984 5.047872 GGCCTCCAAATGCAAAATTCAAAAT 60.048 36.000 0.00 0.00 0.00 1.82
2009 8985 6.448852 GCCTCCAAATGCAAAATTCAAAATT 58.551 32.000 0.00 0.00 0.00 1.82
2010 8986 6.583427 GCCTCCAAATGCAAAATTCAAAATTC 59.417 34.615 0.00 0.00 0.00 2.17
2011 8987 6.797995 CCTCCAAATGCAAAATTCAAAATTCG 59.202 34.615 0.00 0.00 0.00 3.34
2012 8988 7.256756 TCCAAATGCAAAATTCAAAATTCGT 57.743 28.000 0.00 0.00 0.00 3.85
2013 8989 7.130917 TCCAAATGCAAAATTCAAAATTCGTG 58.869 30.769 0.00 0.00 0.00 4.35
2014 8990 7.011763 TCCAAATGCAAAATTCAAAATTCGTGA 59.988 29.630 0.00 0.00 0.00 4.35
2015 8991 7.642978 CCAAATGCAAAATTCAAAATTCGTGAA 59.357 29.630 6.91 6.91 39.24 3.18
2016 8992 9.007252 CAAATGCAAAATTCAAAATTCGTGAAA 57.993 25.926 8.20 0.00 38.44 2.69
2017 8993 9.565213 AAATGCAAAATTCAAAATTCGTGAAAA 57.435 22.222 8.20 0.00 38.44 2.29
2018 8994 9.733219 AATGCAAAATTCAAAATTCGTGAAAAT 57.267 22.222 8.20 0.28 38.44 1.82
2019 8995 9.733219 ATGCAAAATTCAAAATTCGTGAAAATT 57.267 22.222 8.20 5.15 38.44 1.82
2020 8996 9.219497 TGCAAAATTCAAAATTCGTGAAAATTC 57.781 25.926 8.20 0.00 38.44 2.17
2021 8997 8.401537 GCAAAATTCAAAATTCGTGAAAATTCG 58.598 29.630 8.20 0.54 38.44 3.34
2022 8998 8.401537 CAAAATTCAAAATTCGTGAAAATTCGC 58.598 29.630 8.20 0.00 38.44 4.70
2023 8999 6.761731 ATTCAAAATTCGTGAAAATTCGCA 57.238 29.167 8.20 0.00 38.44 5.10
2024 9000 6.761731 TTCAAAATTCGTGAAAATTCGCAT 57.238 29.167 7.41 0.00 37.55 4.73
2025 9001 6.761731 TCAAAATTCGTGAAAATTCGCATT 57.238 29.167 7.41 0.00 37.55 3.56
2026 9002 7.171447 TCAAAATTCGTGAAAATTCGCATTT 57.829 28.000 7.41 4.06 37.55 2.32
2027 9003 7.625553 TCAAAATTCGTGAAAATTCGCATTTT 58.374 26.923 5.43 5.43 43.97 1.82
2028 9004 8.119226 TCAAAATTCGTGAAAATTCGCATTTTT 58.881 25.926 7.20 8.81 41.79 1.94
2078 9054 9.941325 AAAATACAGAGATAGATGAAGGCATAG 57.059 33.333 0.00 0.00 34.11 2.23
2079 9055 5.999205 ACAGAGATAGATGAAGGCATAGG 57.001 43.478 0.00 0.00 34.11 2.57
2080 9056 4.776837 ACAGAGATAGATGAAGGCATAGGG 59.223 45.833 0.00 0.00 34.11 3.53
2081 9057 3.774216 AGAGATAGATGAAGGCATAGGGC 59.226 47.826 0.00 0.00 43.74 5.19
2094 9070 4.981806 GCATAGGGCATAAGTGTGAAAA 57.018 40.909 0.00 0.00 43.97 2.29
2095 9071 5.520376 GCATAGGGCATAAGTGTGAAAAT 57.480 39.130 0.00 0.00 43.97 1.82
2096 9072 5.906073 GCATAGGGCATAAGTGTGAAAATT 58.094 37.500 0.00 0.00 43.97 1.82
2097 9073 6.340522 GCATAGGGCATAAGTGTGAAAATTT 58.659 36.000 0.00 0.00 43.97 1.82
2098 9074 6.818142 GCATAGGGCATAAGTGTGAAAATTTT 59.182 34.615 2.28 2.28 43.97 1.82
2099 9075 7.010460 GCATAGGGCATAAGTGTGAAAATTTTC 59.990 37.037 21.60 21.60 43.97 2.29
2100 9076 6.418057 AGGGCATAAGTGTGAAAATTTTCA 57.582 33.333 26.01 26.01 44.31 2.69
2101 9077 6.458210 AGGGCATAAGTGTGAAAATTTTCAG 58.542 36.000 29.34 18.26 46.80 3.02
2102 9078 5.639082 GGGCATAAGTGTGAAAATTTTCAGG 59.361 40.000 29.34 12.58 46.80 3.86
2103 9079 6.454795 GGCATAAGTGTGAAAATTTTCAGGA 58.545 36.000 29.34 18.15 46.80 3.86
2104 9080 6.366061 GGCATAAGTGTGAAAATTTTCAGGAC 59.634 38.462 29.34 26.03 46.80 3.85
2105 9081 6.088085 GCATAAGTGTGAAAATTTTCAGGACG 59.912 38.462 29.34 17.29 46.80 4.79
2106 9082 5.828299 AAGTGTGAAAATTTTCAGGACGA 57.172 34.783 29.34 11.67 46.80 4.20
2107 9083 5.828299 AGTGTGAAAATTTTCAGGACGAA 57.172 34.783 29.34 11.53 46.80 3.85
2108 9084 6.202516 AGTGTGAAAATTTTCAGGACGAAA 57.797 33.333 29.34 6.55 46.80 3.46
2109 9085 6.805713 AGTGTGAAAATTTTCAGGACGAAAT 58.194 32.000 29.34 12.90 46.80 2.17
2110 9086 7.936584 AGTGTGAAAATTTTCAGGACGAAATA 58.063 30.769 29.34 5.19 46.80 1.40
2111 9087 7.860872 AGTGTGAAAATTTTCAGGACGAAATAC 59.139 33.333 29.34 15.97 46.80 1.89
2112 9088 6.853872 TGTGAAAATTTTCAGGACGAAATACG 59.146 34.615 29.34 0.00 46.80 3.06
2113 9089 5.854338 TGAAAATTTTCAGGACGAAATACGC 59.146 36.000 26.01 0.00 43.12 4.42
2114 9090 5.622770 AAATTTTCAGGACGAAATACGCT 57.377 34.783 0.00 0.00 43.12 5.07
2115 9091 4.600012 ATTTTCAGGACGAAATACGCTG 57.400 40.909 0.00 0.00 43.12 5.18
2116 9092 3.306917 TTTCAGGACGAAATACGCTGA 57.693 42.857 0.00 0.00 46.94 4.26
2117 9093 3.306917 TTCAGGACGAAATACGCTGAA 57.693 42.857 0.00 0.00 43.28 3.02
2118 9094 3.306917 TCAGGACGAAATACGCTGAAA 57.693 42.857 0.00 0.00 46.94 2.69
2119 9095 3.857052 TCAGGACGAAATACGCTGAAAT 58.143 40.909 0.00 0.00 46.94 2.17
2120 9096 3.616821 TCAGGACGAAATACGCTGAAATG 59.383 43.478 0.00 0.00 46.94 2.32
2121 9097 3.616821 CAGGACGAAATACGCTGAAATGA 59.383 43.478 0.00 0.00 46.94 2.57
2122 9098 3.865745 AGGACGAAATACGCTGAAATGAG 59.134 43.478 0.00 0.00 46.94 2.90
2123 9099 3.001330 GGACGAAATACGCTGAAATGAGG 59.999 47.826 0.00 0.00 46.94 3.86
2124 9100 2.351726 ACGAAATACGCTGAAATGAGGC 59.648 45.455 0.00 0.00 46.94 4.70
2125 9101 2.609459 CGAAATACGCTGAAATGAGGCT 59.391 45.455 0.00 0.00 34.51 4.58
2126 9102 3.302740 CGAAATACGCTGAAATGAGGCTC 60.303 47.826 7.79 7.79 34.51 4.70
2127 9103 3.550437 AATACGCTGAAATGAGGCTCT 57.450 42.857 16.72 0.00 0.00 4.09
2128 9104 2.299993 TACGCTGAAATGAGGCTCTG 57.700 50.000 16.72 0.57 0.00 3.35
2129 9105 1.023513 ACGCTGAAATGAGGCTCTGC 61.024 55.000 16.72 9.09 34.29 4.26
2130 9106 1.022982 CGCTGAAATGAGGCTCTGCA 61.023 55.000 16.72 7.43 36.59 4.41
2131 9107 1.171308 GCTGAAATGAGGCTCTGCAA 58.829 50.000 16.72 0.00 36.74 4.08
2132 9108 1.542915 GCTGAAATGAGGCTCTGCAAA 59.457 47.619 16.72 0.00 36.74 3.68
2133 9109 2.029649 GCTGAAATGAGGCTCTGCAAAA 60.030 45.455 16.72 0.00 36.74 2.44
2134 9110 3.553508 GCTGAAATGAGGCTCTGCAAAAA 60.554 43.478 16.72 0.00 36.74 1.94
2153 9129 5.372343 AAAAAGACAAATCTGGGGCTTTT 57.628 34.783 0.00 0.00 35.69 2.27
2154 9130 6.493189 AAAAAGACAAATCTGGGGCTTTTA 57.507 33.333 5.72 0.00 34.38 1.52
2155 9131 6.493189 AAAAGACAAATCTGGGGCTTTTAA 57.507 33.333 3.55 0.00 34.04 1.52
2156 9132 5.468540 AAGACAAATCTGGGGCTTTTAAC 57.531 39.130 0.00 0.00 34.48 2.01
2157 9133 4.479158 AGACAAATCTGGGGCTTTTAACA 58.521 39.130 0.00 0.00 32.29 2.41
2158 9134 4.280929 AGACAAATCTGGGGCTTTTAACAC 59.719 41.667 0.00 0.00 32.29 3.32
2159 9135 3.964031 ACAAATCTGGGGCTTTTAACACA 59.036 39.130 0.00 0.00 0.00 3.72
2160 9136 4.592778 ACAAATCTGGGGCTTTTAACACAT 59.407 37.500 0.00 0.00 0.00 3.21
2161 9137 4.806640 AATCTGGGGCTTTTAACACATG 57.193 40.909 0.00 0.00 0.00 3.21
2162 9138 3.517296 TCTGGGGCTTTTAACACATGA 57.483 42.857 0.00 0.00 0.00 3.07
2163 9139 4.046286 TCTGGGGCTTTTAACACATGAT 57.954 40.909 0.00 0.00 0.00 2.45
2164 9140 5.186256 TCTGGGGCTTTTAACACATGATA 57.814 39.130 0.00 0.00 0.00 2.15
2165 9141 4.947388 TCTGGGGCTTTTAACACATGATAC 59.053 41.667 0.00 0.00 0.00 2.24
2166 9142 4.929479 TGGGGCTTTTAACACATGATACT 58.071 39.130 0.00 0.00 0.00 2.12
2167 9143 6.068461 TGGGGCTTTTAACACATGATACTA 57.932 37.500 0.00 0.00 0.00 1.82
2168 9144 6.668645 TGGGGCTTTTAACACATGATACTAT 58.331 36.000 0.00 0.00 0.00 2.12
2169 9145 7.122715 TGGGGCTTTTAACACATGATACTATT 58.877 34.615 0.00 0.00 0.00 1.73
2170 9146 7.284489 TGGGGCTTTTAACACATGATACTATTC 59.716 37.037 0.00 0.00 0.00 1.75
2171 9147 7.284489 GGGGCTTTTAACACATGATACTATTCA 59.716 37.037 0.00 0.00 0.00 2.57
2172 9148 8.850156 GGGCTTTTAACACATGATACTATTCAT 58.150 33.333 0.00 0.00 36.79 2.57
2173 9149 9.884465 GGCTTTTAACACATGATACTATTCATC 57.116 33.333 0.00 0.00 34.09 2.92
2180 9156 8.883954 ACACATGATACTATTCATCTTCACAG 57.116 34.615 0.00 0.00 34.09 3.66
2181 9157 8.699130 ACACATGATACTATTCATCTTCACAGA 58.301 33.333 0.00 0.00 34.09 3.41
2182 9158 8.976471 CACATGATACTATTCATCTTCACAGAC 58.024 37.037 0.00 0.00 34.09 3.51
2183 9159 8.922237 ACATGATACTATTCATCTTCACAGACT 58.078 33.333 0.00 0.00 34.09 3.24
2190 9166 9.030452 ACTATTCATCTTCACAGACTAAGAACT 57.970 33.333 0.00 0.00 35.47 3.01
2191 9167 9.868277 CTATTCATCTTCACAGACTAAGAACTT 57.132 33.333 0.00 0.00 35.47 2.66
2192 9168 7.953158 TTCATCTTCACAGACTAAGAACTTG 57.047 36.000 0.00 0.00 35.47 3.16
2193 9169 7.055667 TCATCTTCACAGACTAAGAACTTGT 57.944 36.000 0.00 0.00 35.47 3.16
2194 9170 7.148641 TCATCTTCACAGACTAAGAACTTGTC 58.851 38.462 0.00 0.00 35.47 3.18
2195 9171 6.716934 TCTTCACAGACTAAGAACTTGTCT 57.283 37.500 11.07 11.07 41.15 3.41
2197 9173 7.556844 TCTTCACAGACTAAGAACTTGTCTTT 58.443 34.615 12.94 7.74 44.64 2.52
2198 9174 8.041323 TCTTCACAGACTAAGAACTTGTCTTTT 58.959 33.333 12.94 5.40 44.64 2.27
2199 9175 8.561738 TTCACAGACTAAGAACTTGTCTTTTT 57.438 30.769 12.94 3.83 44.64 1.94
2220 9196 7.946918 TTTTTATACAGATCGCATTTCAACG 57.053 32.000 0.00 0.00 0.00 4.10
2221 9197 6.656314 TTTATACAGATCGCATTTCAACGT 57.344 33.333 0.00 0.00 0.00 3.99
2222 9198 7.758613 TTTATACAGATCGCATTTCAACGTA 57.241 32.000 0.00 0.00 0.00 3.57
2223 9199 7.940178 TTATACAGATCGCATTTCAACGTAT 57.060 32.000 0.00 0.00 0.00 3.06
2224 9200 6.844696 ATACAGATCGCATTTCAACGTATT 57.155 33.333 0.00 0.00 0.00 1.89
2225 9201 5.545658 ACAGATCGCATTTCAACGTATTT 57.454 34.783 0.00 0.00 0.00 1.40
2226 9202 5.560148 ACAGATCGCATTTCAACGTATTTC 58.440 37.500 0.00 0.00 0.00 2.17
2227 9203 5.121611 ACAGATCGCATTTCAACGTATTTCA 59.878 36.000 0.00 0.00 0.00 2.69
2228 9204 6.183360 ACAGATCGCATTTCAACGTATTTCAT 60.183 34.615 0.00 0.00 0.00 2.57
2229 9205 6.355405 CAGATCGCATTTCAACGTATTTCATC 59.645 38.462 0.00 0.00 0.00 2.92
2230 9206 4.904116 TCGCATTTCAACGTATTTCATCC 58.096 39.130 0.00 0.00 0.00 3.51
2231 9207 4.634004 TCGCATTTCAACGTATTTCATCCT 59.366 37.500 0.00 0.00 0.00 3.24
2232 9208 5.813157 TCGCATTTCAACGTATTTCATCCTA 59.187 36.000 0.00 0.00 0.00 2.94
2233 9209 6.314152 TCGCATTTCAACGTATTTCATCCTAA 59.686 34.615 0.00 0.00 0.00 2.69
2234 9210 6.964370 CGCATTTCAACGTATTTCATCCTAAA 59.036 34.615 0.00 0.00 0.00 1.85
2235 9211 7.483375 CGCATTTCAACGTATTTCATCCTAAAA 59.517 33.333 0.00 0.00 0.00 1.52
2236 9212 9.301153 GCATTTCAACGTATTTCATCCTAAAAT 57.699 29.630 0.00 0.00 0.00 1.82
2251 9227 8.962679 TCATCCTAAAATTTTACACACATACCC 58.037 33.333 6.54 0.00 0.00 3.69
2252 9228 7.706100 TCCTAAAATTTTACACACATACCCC 57.294 36.000 6.54 0.00 0.00 4.95
2253 9229 7.471890 TCCTAAAATTTTACACACATACCCCT 58.528 34.615 6.54 0.00 0.00 4.79
2254 9230 7.612633 TCCTAAAATTTTACACACATACCCCTC 59.387 37.037 6.54 0.00 0.00 4.30
2255 9231 7.394923 CCTAAAATTTTACACACATACCCCTCA 59.605 37.037 6.54 0.00 0.00 3.86
2256 9232 6.584185 AAATTTTACACACATACCCCTCAC 57.416 37.500 0.00 0.00 0.00 3.51
2257 9233 4.708576 TTTTACACACATACCCCTCACA 57.291 40.909 0.00 0.00 0.00 3.58
2258 9234 4.919774 TTTACACACATACCCCTCACAT 57.080 40.909 0.00 0.00 0.00 3.21
2259 9235 4.481368 TTACACACATACCCCTCACATC 57.519 45.455 0.00 0.00 0.00 3.06
2260 9236 1.559682 ACACACATACCCCTCACATCC 59.440 52.381 0.00 0.00 0.00 3.51
2261 9237 1.839994 CACACATACCCCTCACATCCT 59.160 52.381 0.00 0.00 0.00 3.24
2262 9238 2.239654 CACACATACCCCTCACATCCTT 59.760 50.000 0.00 0.00 0.00 3.36
2263 9239 2.239654 ACACATACCCCTCACATCCTTG 59.760 50.000 0.00 0.00 0.00 3.61
2264 9240 2.239654 CACATACCCCTCACATCCTTGT 59.760 50.000 0.00 0.00 36.15 3.16
2265 9241 2.919602 ACATACCCCTCACATCCTTGTT 59.080 45.455 0.00 0.00 32.34 2.83
2266 9242 3.333680 ACATACCCCTCACATCCTTGTTT 59.666 43.478 0.00 0.00 32.34 2.83
2267 9243 4.538490 ACATACCCCTCACATCCTTGTTTA 59.462 41.667 0.00 0.00 32.34 2.01
2268 9244 3.434940 ACCCCTCACATCCTTGTTTAC 57.565 47.619 0.00 0.00 32.34 2.01
2269 9245 2.986728 ACCCCTCACATCCTTGTTTACT 59.013 45.455 0.00 0.00 32.34 2.24
2270 9246 3.397955 ACCCCTCACATCCTTGTTTACTT 59.602 43.478 0.00 0.00 32.34 2.24
2271 9247 3.758554 CCCCTCACATCCTTGTTTACTTG 59.241 47.826 0.00 0.00 32.34 3.16
2272 9248 4.398319 CCCTCACATCCTTGTTTACTTGT 58.602 43.478 0.00 0.00 32.34 3.16
2273 9249 5.514136 CCCCTCACATCCTTGTTTACTTGTA 60.514 44.000 0.00 0.00 32.34 2.41
2274 9250 5.411669 CCCTCACATCCTTGTTTACTTGTAC 59.588 44.000 0.00 0.00 32.34 2.90
2275 9251 5.995282 CCTCACATCCTTGTTTACTTGTACA 59.005 40.000 0.00 0.00 32.34 2.90
2276 9252 6.485313 CCTCACATCCTTGTTTACTTGTACAA 59.515 38.462 8.28 8.28 32.34 2.41
2277 9253 7.174946 CCTCACATCCTTGTTTACTTGTACAAT 59.825 37.037 9.13 2.49 34.10 2.71
2278 9254 8.094798 TCACATCCTTGTTTACTTGTACAATC 57.905 34.615 9.13 0.00 34.10 2.67
2279 9255 7.936847 TCACATCCTTGTTTACTTGTACAATCT 59.063 33.333 9.13 0.00 34.10 2.40
2280 9256 9.214957 CACATCCTTGTTTACTTGTACAATCTA 57.785 33.333 9.13 0.00 34.10 1.98
2281 9257 9.959721 ACATCCTTGTTTACTTGTACAATCTAT 57.040 29.630 9.13 0.00 34.10 1.98
2344 9320 3.448469 AAAAACCGGCCTCCATGAA 57.552 47.368 0.00 0.00 0.00 2.57
2345 9321 1.256812 AAAAACCGGCCTCCATGAAG 58.743 50.000 0.00 0.00 0.00 3.02
2346 9322 0.611896 AAAACCGGCCTCCATGAAGG 60.612 55.000 0.00 0.00 39.62 3.46
2352 9328 3.634202 CCTCCATGAAGGCCGAGA 58.366 61.111 0.00 0.00 37.29 4.04
2353 9329 1.445095 CCTCCATGAAGGCCGAGAG 59.555 63.158 0.00 0.00 37.29 3.20
2354 9330 1.227497 CTCCATGAAGGCCGAGAGC 60.227 63.158 0.00 0.00 42.60 4.09
2363 9339 2.861006 GCCGAGAGCCAAAACGAC 59.139 61.111 0.00 0.00 34.35 4.34
2364 9340 1.959226 GCCGAGAGCCAAAACGACA 60.959 57.895 0.00 0.00 34.35 4.35
2365 9341 1.298859 GCCGAGAGCCAAAACGACAT 61.299 55.000 0.00 0.00 34.35 3.06
2366 9342 1.156736 CCGAGAGCCAAAACGACATT 58.843 50.000 0.00 0.00 0.00 2.71
2367 9343 1.128692 CCGAGAGCCAAAACGACATTC 59.871 52.381 0.00 0.00 0.00 2.67
2368 9344 2.069273 CGAGAGCCAAAACGACATTCT 58.931 47.619 0.00 0.00 0.00 2.40
2478 9471 1.886222 GCTACAACCACCAATGCTCCA 60.886 52.381 0.00 0.00 0.00 3.86
2539 9554 3.220940 TCCTGTGTTCATTTGCATGTCA 58.779 40.909 0.00 0.00 0.00 3.58
2552 9567 5.565592 TTGCATGTCATAATCAGTCCAAC 57.434 39.130 0.00 0.00 0.00 3.77
2553 9568 4.587891 TGCATGTCATAATCAGTCCAACA 58.412 39.130 0.00 0.00 0.00 3.33
2626 9657 1.227497 CATCTCCCTCAGCGCCTTC 60.227 63.158 2.29 0.00 0.00 3.46
2675 9706 1.893919 GACAAGGGAAGCGCTCTCCT 61.894 60.000 26.83 24.39 0.00 3.69
2685 9716 1.023513 GCGCTCTCCTTGACATGCTT 61.024 55.000 0.00 0.00 0.00 3.91
2701 9732 4.081198 ACATGCTTGAGGTTTTTGGTTTCA 60.081 37.500 6.60 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.977505 GTACAATGTGTGCAAGAAATGTTTATT 58.022 29.630 0.00 0.00 33.03 1.40
7 8 7.484140 TGTACAATGTGTGCAAGAAATGTTTA 58.516 30.769 0.00 0.00 39.94 2.01
8 9 6.336566 TGTACAATGTGTGCAAGAAATGTTT 58.663 32.000 0.00 0.00 39.94 2.83
9 10 5.900425 TGTACAATGTGTGCAAGAAATGTT 58.100 33.333 0.00 0.00 39.94 2.71
13 14 7.840342 AAAAATGTACAATGTGTGCAAGAAA 57.160 28.000 0.00 0.00 45.54 2.52
195 196 9.793252 GTGTATGAAAAATGCTCATCAAGTATT 57.207 29.630 0.00 0.00 41.49 1.89
196 197 8.959548 TGTGTATGAAAAATGCTCATCAAGTAT 58.040 29.630 0.00 0.00 35.21 2.12
197 198 8.334263 TGTGTATGAAAAATGCTCATCAAGTA 57.666 30.769 0.00 0.00 35.21 2.24
198 199 7.218228 TGTGTATGAAAAATGCTCATCAAGT 57.782 32.000 0.00 0.00 35.21 3.16
200 201 8.089597 ACAATGTGTATGAAAAATGCTCATCAA 58.910 29.630 0.00 0.00 35.21 2.57
201 202 7.604549 ACAATGTGTATGAAAAATGCTCATCA 58.395 30.769 0.00 0.00 35.21 3.07
202 203 9.740239 ATACAATGTGTATGAAAAATGCTCATC 57.260 29.630 0.00 0.00 41.62 2.92
204 205 9.926158 AAATACAATGTGTATGAAAAATGCTCA 57.074 25.926 0.00 0.00 42.29 4.26
206 207 9.709495 ACAAATACAATGTGTATGAAAAATGCT 57.291 25.926 0.00 0.00 42.29 3.79
271 272 8.564574 GGATTTGAGAACTGTTAAATGTGTACA 58.435 33.333 4.88 0.00 0.00 2.90
272 273 8.784043 AGGATTTGAGAACTGTTAAATGTGTAC 58.216 33.333 4.88 0.00 0.00 2.90
273 274 8.918202 AGGATTTGAGAACTGTTAAATGTGTA 57.082 30.769 4.88 0.00 0.00 2.90
275 276 8.103948 AGAGGATTTGAGAACTGTTAAATGTG 57.896 34.615 4.88 0.00 0.00 3.21
276 277 9.220767 GTAGAGGATTTGAGAACTGTTAAATGT 57.779 33.333 4.88 0.00 0.00 2.71
277 278 9.219603 TGTAGAGGATTTGAGAACTGTTAAATG 57.780 33.333 4.88 0.00 0.00 2.32
278 279 9.965902 ATGTAGAGGATTTGAGAACTGTTAAAT 57.034 29.630 0.00 0.00 0.00 1.40
279 280 9.793259 AATGTAGAGGATTTGAGAACTGTTAAA 57.207 29.630 0.00 0.00 0.00 1.52
283 284 9.965902 AATAAATGTAGAGGATTTGAGAACTGT 57.034 29.630 0.00 0.00 0.00 3.55
364 6748 7.096551 TGCTCATCAAGTATTTTAAAAAGGCC 58.903 34.615 4.44 0.00 0.00 5.19
541 6929 8.969121 TGTGTATGAAAAATGTTGATCATGTC 57.031 30.769 0.00 0.00 36.81 3.06
708 7096 4.000557 CTCCACACACACACGCGC 62.001 66.667 5.73 0.00 0.00 6.86
709 7097 1.425267 TTTCTCCACACACACACGCG 61.425 55.000 3.53 3.53 0.00 6.01
710 7098 0.730265 TTTTCTCCACACACACACGC 59.270 50.000 0.00 0.00 0.00 5.34
711 7099 2.006888 ACTTTTCTCCACACACACACG 58.993 47.619 0.00 0.00 0.00 4.49
712 7100 5.554822 TTTACTTTTCTCCACACACACAC 57.445 39.130 0.00 0.00 0.00 3.82
713 7101 6.576662 TTTTTACTTTTCTCCACACACACA 57.423 33.333 0.00 0.00 0.00 3.72
740 7138 4.588951 GTCCATTTTGAGGGGAGTTTCTTT 59.411 41.667 0.00 0.00 0.00 2.52
743 7141 2.826128 GGTCCATTTTGAGGGGAGTTTC 59.174 50.000 0.00 0.00 0.00 2.78
762 7475 4.008933 GCACGAGACTGGGCTGGT 62.009 66.667 0.00 0.00 0.00 4.00
789 7502 2.711922 CGAGACGTAGGGCAGCCTT 61.712 63.158 12.43 6.28 0.00 4.35
897 7657 2.515290 GGTATCGGTTTGGCGGGG 60.515 66.667 0.00 0.00 0.00 5.73
924 7688 4.330250 GTGCTGCATATATGATGGAACCT 58.670 43.478 17.10 0.00 0.00 3.50
926 7690 3.125829 CGGTGCTGCATATATGATGGAAC 59.874 47.826 17.10 10.24 0.00 3.62
933 7701 1.325640 GCGATCGGTGCTGCATATATG 59.674 52.381 18.30 8.45 0.00 1.78
968 7737 4.675114 CAGAAAATGTCGCAAAGTGGTTAC 59.325 41.667 0.00 0.00 0.00 2.50
969 7738 4.576873 TCAGAAAATGTCGCAAAGTGGTTA 59.423 37.500 0.00 0.00 0.00 2.85
983 7752 6.644592 GGATCTAGGTCTCGAATCAGAAAATG 59.355 42.308 2.34 0.00 0.00 2.32
1049 7819 3.047877 CACCAAGGGAACGCCGAC 61.048 66.667 0.00 0.00 33.83 4.79
1272 8046 3.771160 CCACCTTCCCCTCGACGG 61.771 72.222 0.00 0.00 35.96 4.79
1356 8130 0.387202 ACATCTCGGCGAGGAATCAG 59.613 55.000 33.93 19.57 0.00 2.90
1414 8188 0.038744 ACTGCCTTGATTGGAGGTGG 59.961 55.000 0.00 0.00 36.63 4.61
1426 8200 2.029828 CGATAGCGAGGATTACTGCCTT 60.030 50.000 0.00 0.00 40.82 4.35
1435 8209 1.600663 CGAGCAAACGATAGCGAGGAT 60.601 52.381 7.69 0.00 41.64 3.24
1436 8210 0.248498 CGAGCAAACGATAGCGAGGA 60.248 55.000 7.69 0.00 41.64 3.71
1442 8216 3.859961 ACAAGATGTCGAGCAAACGATAG 59.140 43.478 0.00 0.00 43.93 2.08
1505 8284 5.525378 GGCCATACATCTCTACACTTTTCTG 59.475 44.000 0.00 0.00 0.00 3.02
1522 8301 1.312815 GACAAGATGCCAGGCCATAC 58.687 55.000 9.64 0.00 0.00 2.39
1526 8305 1.817099 CTCGACAAGATGCCAGGCC 60.817 63.158 9.64 0.00 0.00 5.19
1532 8311 0.175760 TACAGCCCTCGACAAGATGC 59.824 55.000 0.00 0.00 0.00 3.91
1548 8327 5.426509 ACATCTCCAGAGTCCATCAATTACA 59.573 40.000 0.00 0.00 0.00 2.41
1549 8328 5.923204 ACATCTCCAGAGTCCATCAATTAC 58.077 41.667 0.00 0.00 0.00 1.89
1550 8329 7.862274 ATACATCTCCAGAGTCCATCAATTA 57.138 36.000 0.00 0.00 0.00 1.40
1551 8330 6.760440 ATACATCTCCAGAGTCCATCAATT 57.240 37.500 0.00 0.00 0.00 2.32
1552 8331 6.760440 AATACATCTCCAGAGTCCATCAAT 57.240 37.500 0.00 0.00 0.00 2.57
1553 8332 6.841229 AGTAATACATCTCCAGAGTCCATCAA 59.159 38.462 0.00 0.00 0.00 2.57
1554 8333 6.377080 AGTAATACATCTCCAGAGTCCATCA 58.623 40.000 0.00 0.00 0.00 3.07
1555 8334 6.491745 TGAGTAATACATCTCCAGAGTCCATC 59.508 42.308 0.00 0.00 0.00 3.51
1556 8335 6.377080 TGAGTAATACATCTCCAGAGTCCAT 58.623 40.000 0.00 0.00 0.00 3.41
1557 8336 5.766590 TGAGTAATACATCTCCAGAGTCCA 58.233 41.667 0.00 0.00 0.00 4.02
1558 8337 6.065374 TCTGAGTAATACATCTCCAGAGTCC 58.935 44.000 0.00 0.00 0.00 3.85
1559 8338 6.995686 TCTCTGAGTAATACATCTCCAGAGTC 59.004 42.308 13.87 0.00 37.31 3.36
1560 8339 6.905736 TCTCTGAGTAATACATCTCCAGAGT 58.094 40.000 13.87 0.00 37.31 3.24
1565 8344 8.254508 ACACTTTTCTCTGAGTAATACATCTCC 58.745 37.037 4.32 0.00 0.00 3.71
1667 8446 6.041865 TGGAAGAACATTCAACATGGATTTGT 59.958 34.615 0.00 0.00 0.00 2.83
1797 8773 2.733026 CTGGCCTCGAAAAGCAATTTTG 59.267 45.455 3.32 0.00 34.22 2.44
1798 8774 2.627699 TCTGGCCTCGAAAAGCAATTTT 59.372 40.909 3.32 0.00 0.00 1.82
1799 8775 2.229784 CTCTGGCCTCGAAAAGCAATTT 59.770 45.455 3.32 0.00 0.00 1.82
1800 8776 1.815003 CTCTGGCCTCGAAAAGCAATT 59.185 47.619 3.32 0.00 0.00 2.32
1801 8777 1.271597 ACTCTGGCCTCGAAAAGCAAT 60.272 47.619 3.32 0.00 0.00 3.56
1802 8778 0.108585 ACTCTGGCCTCGAAAAGCAA 59.891 50.000 3.32 0.00 0.00 3.91
1803 8779 0.108585 AACTCTGGCCTCGAAAAGCA 59.891 50.000 3.32 0.00 0.00 3.91
1804 8780 2.094762 TAACTCTGGCCTCGAAAAGC 57.905 50.000 3.32 0.00 0.00 3.51
1805 8781 5.392057 GGAAATTAACTCTGGCCTCGAAAAG 60.392 44.000 3.32 0.00 0.00 2.27
1806 8782 4.457949 GGAAATTAACTCTGGCCTCGAAAA 59.542 41.667 3.32 0.00 0.00 2.29
1807 8783 4.007659 GGAAATTAACTCTGGCCTCGAAA 58.992 43.478 3.32 0.00 0.00 3.46
1808 8784 3.263425 AGGAAATTAACTCTGGCCTCGAA 59.737 43.478 3.32 0.00 0.00 3.71
1809 8785 2.838202 AGGAAATTAACTCTGGCCTCGA 59.162 45.455 3.32 0.00 0.00 4.04
1810 8786 3.268023 AGGAAATTAACTCTGGCCTCG 57.732 47.619 3.32 0.00 0.00 4.63
1811 8787 5.243954 ACAAAAGGAAATTAACTCTGGCCTC 59.756 40.000 3.32 0.00 0.00 4.70
1812 8788 5.147767 ACAAAAGGAAATTAACTCTGGCCT 58.852 37.500 3.32 0.00 0.00 5.19
1813 8789 5.468540 ACAAAAGGAAATTAACTCTGGCC 57.531 39.130 0.00 0.00 0.00 5.36
1814 8790 7.448748 TCTACAAAAGGAAATTAACTCTGGC 57.551 36.000 0.00 0.00 0.00 4.85
1815 8791 8.678199 GGATCTACAAAAGGAAATTAACTCTGG 58.322 37.037 0.00 0.00 0.00 3.86
1816 8792 9.454859 AGGATCTACAAAAGGAAATTAACTCTG 57.545 33.333 0.00 0.00 0.00 3.35
1831 8807 9.938280 TCGAAGAATTAGAAAAGGATCTACAAA 57.062 29.630 0.00 0.00 31.78 2.83
1835 8811 9.046296 GCAATCGAAGAATTAGAAAAGGATCTA 57.954 33.333 0.00 0.00 43.58 1.98
1836 8812 7.772757 AGCAATCGAAGAATTAGAAAAGGATCT 59.227 33.333 0.00 0.00 43.58 2.75
1837 8813 7.924940 AGCAATCGAAGAATTAGAAAAGGATC 58.075 34.615 0.00 0.00 43.58 3.36
1838 8814 7.012799 GGAGCAATCGAAGAATTAGAAAAGGAT 59.987 37.037 0.00 0.00 43.58 3.24
1839 8815 6.316390 GGAGCAATCGAAGAATTAGAAAAGGA 59.684 38.462 0.00 0.00 43.58 3.36
1840 8816 6.317391 AGGAGCAATCGAAGAATTAGAAAAGG 59.683 38.462 0.00 0.00 43.58 3.11
1841 8817 7.313951 AGGAGCAATCGAAGAATTAGAAAAG 57.686 36.000 0.00 0.00 43.58 2.27
1842 8818 7.687941 AAGGAGCAATCGAAGAATTAGAAAA 57.312 32.000 0.00 0.00 43.58 2.29
1843 8819 7.687941 AAAGGAGCAATCGAAGAATTAGAAA 57.312 32.000 0.00 0.00 43.58 2.52
1844 8820 7.687941 AAAAGGAGCAATCGAAGAATTAGAA 57.312 32.000 0.00 0.00 43.58 2.10
1845 8821 7.687941 AAAAAGGAGCAATCGAAGAATTAGA 57.312 32.000 0.00 0.00 43.58 2.10
1956 8932 9.512588 CCATGGAGCTTCAATTATAGAACTAAT 57.487 33.333 5.56 0.00 0.00 1.73
1957 8933 8.713971 TCCATGGAGCTTCAATTATAGAACTAA 58.286 33.333 11.44 0.00 0.00 2.24
1958 8934 8.262601 TCCATGGAGCTTCAATTATAGAACTA 57.737 34.615 11.44 0.00 0.00 2.24
1959 8935 7.141758 TCCATGGAGCTTCAATTATAGAACT 57.858 36.000 11.44 0.00 0.00 3.01
1960 8936 6.429385 CCTCCATGGAGCTTCAATTATAGAAC 59.571 42.308 32.97 0.00 40.69 3.01
1961 8937 6.537355 CCTCCATGGAGCTTCAATTATAGAA 58.463 40.000 32.97 0.00 40.69 2.10
1962 8938 5.513788 GCCTCCATGGAGCTTCAATTATAGA 60.514 44.000 32.97 0.00 40.69 1.98
1963 8939 4.699257 GCCTCCATGGAGCTTCAATTATAG 59.301 45.833 32.97 17.04 40.69 1.31
1964 8940 4.507335 GGCCTCCATGGAGCTTCAATTATA 60.507 45.833 32.97 0.00 40.69 0.98
1965 8941 3.494332 GCCTCCATGGAGCTTCAATTAT 58.506 45.455 32.97 0.00 40.69 1.28
1966 8942 2.423373 GGCCTCCATGGAGCTTCAATTA 60.423 50.000 32.97 0.00 40.69 1.40
1967 8943 1.687368 GGCCTCCATGGAGCTTCAATT 60.687 52.381 32.97 0.00 40.69 2.32
1968 8944 0.106318 GGCCTCCATGGAGCTTCAAT 60.106 55.000 32.97 0.00 40.69 2.57
1969 8945 1.210204 AGGCCTCCATGGAGCTTCAA 61.210 55.000 32.97 1.18 40.69 2.69
1970 8946 1.617536 AGGCCTCCATGGAGCTTCA 60.618 57.895 32.97 0.00 40.69 3.02
1971 8947 1.148048 GAGGCCTCCATGGAGCTTC 59.852 63.158 32.97 27.03 40.69 3.86
1972 8948 3.329093 GAGGCCTCCATGGAGCTT 58.671 61.111 32.97 24.15 40.69 3.74
1982 8958 3.264947 GAATTTTGCATTTGGAGGCCTC 58.735 45.455 25.59 25.59 0.00 4.70
1983 8959 2.638855 TGAATTTTGCATTTGGAGGCCT 59.361 40.909 3.86 3.86 0.00 5.19
1984 8960 3.056588 TGAATTTTGCATTTGGAGGCC 57.943 42.857 0.00 0.00 0.00 5.19
1985 8961 5.435820 TTTTGAATTTTGCATTTGGAGGC 57.564 34.783 0.00 0.00 0.00 4.70
1986 8962 6.797995 CGAATTTTGAATTTTGCATTTGGAGG 59.202 34.615 0.00 0.00 0.00 4.30
1987 8963 7.321746 CACGAATTTTGAATTTTGCATTTGGAG 59.678 33.333 0.00 0.00 0.00 3.86
1988 8964 7.011763 TCACGAATTTTGAATTTTGCATTTGGA 59.988 29.630 0.00 0.00 0.00 3.53
1989 8965 7.130917 TCACGAATTTTGAATTTTGCATTTGG 58.869 30.769 0.00 0.00 0.00 3.28
1990 8966 8.544409 TTCACGAATTTTGAATTTTGCATTTG 57.456 26.923 0.00 0.00 0.00 2.32
1991 8967 9.565213 TTTTCACGAATTTTGAATTTTGCATTT 57.435 22.222 4.72 0.00 33.03 2.32
1992 8968 9.733219 ATTTTCACGAATTTTGAATTTTGCATT 57.267 22.222 4.72 0.00 33.03 3.56
1993 8969 9.733219 AATTTTCACGAATTTTGAATTTTGCAT 57.267 22.222 4.72 0.00 33.03 3.96
1994 8970 9.219497 GAATTTTCACGAATTTTGAATTTTGCA 57.781 25.926 4.72 0.00 33.03 4.08
1995 8971 8.401537 CGAATTTTCACGAATTTTGAATTTTGC 58.598 29.630 4.72 0.00 33.03 3.68
1996 8972 8.401537 GCGAATTTTCACGAATTTTGAATTTTG 58.598 29.630 4.72 6.88 33.03 2.44
1997 8973 8.119226 TGCGAATTTTCACGAATTTTGAATTTT 58.881 25.926 4.72 2.90 33.03 1.82
1998 8974 7.625553 TGCGAATTTTCACGAATTTTGAATTT 58.374 26.923 4.72 3.17 33.03 1.82
1999 8975 7.171447 TGCGAATTTTCACGAATTTTGAATT 57.829 28.000 4.72 0.00 33.03 2.17
2000 8976 6.761731 TGCGAATTTTCACGAATTTTGAAT 57.238 29.167 4.72 0.00 33.03 2.57
2001 8977 6.761731 ATGCGAATTTTCACGAATTTTGAA 57.238 29.167 0.00 0.48 29.75 2.69
2002 8978 6.761731 AATGCGAATTTTCACGAATTTTGA 57.238 29.167 0.00 0.00 34.64 2.69
2052 9028 9.941325 CTATGCCTTCATCTATCTCTGTATTTT 57.059 33.333 0.00 0.00 34.22 1.82
2053 9029 8.538701 CCTATGCCTTCATCTATCTCTGTATTT 58.461 37.037 0.00 0.00 34.22 1.40
2054 9030 7.125507 CCCTATGCCTTCATCTATCTCTGTATT 59.874 40.741 0.00 0.00 34.22 1.89
2055 9031 6.610830 CCCTATGCCTTCATCTATCTCTGTAT 59.389 42.308 0.00 0.00 34.22 2.29
2056 9032 5.954752 CCCTATGCCTTCATCTATCTCTGTA 59.045 44.000 0.00 0.00 34.22 2.74
2057 9033 4.776837 CCCTATGCCTTCATCTATCTCTGT 59.223 45.833 0.00 0.00 34.22 3.41
2058 9034 4.382901 GCCCTATGCCTTCATCTATCTCTG 60.383 50.000 0.00 0.00 34.22 3.35
2059 9035 3.774216 GCCCTATGCCTTCATCTATCTCT 59.226 47.826 0.00 0.00 34.22 3.10
2060 9036 3.517100 TGCCCTATGCCTTCATCTATCTC 59.483 47.826 0.00 0.00 40.16 2.75
2061 9037 3.524826 TGCCCTATGCCTTCATCTATCT 58.475 45.455 0.00 0.00 40.16 1.98
2062 9038 3.988976 TGCCCTATGCCTTCATCTATC 57.011 47.619 0.00 0.00 40.16 2.08
2063 9039 5.490357 ACTTATGCCCTATGCCTTCATCTAT 59.510 40.000 0.00 0.00 40.16 1.98
2064 9040 4.846367 ACTTATGCCCTATGCCTTCATCTA 59.154 41.667 0.00 0.00 40.16 1.98
2065 9041 3.654806 ACTTATGCCCTATGCCTTCATCT 59.345 43.478 0.00 0.00 40.16 2.90
2066 9042 3.755378 CACTTATGCCCTATGCCTTCATC 59.245 47.826 0.00 0.00 40.16 2.92
2067 9043 3.139025 ACACTTATGCCCTATGCCTTCAT 59.861 43.478 0.00 0.00 40.16 2.57
2068 9044 2.509548 ACACTTATGCCCTATGCCTTCA 59.490 45.455 0.00 0.00 40.16 3.02
2069 9045 2.880890 CACACTTATGCCCTATGCCTTC 59.119 50.000 0.00 0.00 40.16 3.46
2070 9046 2.509548 TCACACTTATGCCCTATGCCTT 59.490 45.455 0.00 0.00 40.16 4.35
2071 9047 2.126882 TCACACTTATGCCCTATGCCT 58.873 47.619 0.00 0.00 40.16 4.75
2072 9048 2.638480 TCACACTTATGCCCTATGCC 57.362 50.000 0.00 0.00 40.16 4.40
2073 9049 4.981806 TTTTCACACTTATGCCCTATGC 57.018 40.909 0.00 0.00 41.77 3.14
2074 9050 8.034215 TGAAAATTTTCACACTTATGCCCTATG 58.966 33.333 26.01 0.00 41.88 2.23
2075 9051 8.133024 TGAAAATTTTCACACTTATGCCCTAT 57.867 30.769 26.01 0.00 41.88 2.57
2076 9052 7.309744 CCTGAAAATTTTCACACTTATGCCCTA 60.310 37.037 26.01 4.03 41.88 3.53
2077 9053 6.418057 TGAAAATTTTCACACTTATGCCCT 57.582 33.333 26.01 0.00 41.88 5.19
2078 9054 5.639082 CCTGAAAATTTTCACACTTATGCCC 59.361 40.000 26.01 0.64 41.88 5.36
2079 9055 6.366061 GTCCTGAAAATTTTCACACTTATGCC 59.634 38.462 26.01 7.53 41.88 4.40
2080 9056 6.088085 CGTCCTGAAAATTTTCACACTTATGC 59.912 38.462 26.01 11.42 41.88 3.14
2081 9057 7.359595 TCGTCCTGAAAATTTTCACACTTATG 58.640 34.615 26.01 15.69 41.88 1.90
2082 9058 7.504924 TCGTCCTGAAAATTTTCACACTTAT 57.495 32.000 26.01 0.00 41.88 1.73
2083 9059 6.928979 TCGTCCTGAAAATTTTCACACTTA 57.071 33.333 26.01 14.28 41.88 2.24
2084 9060 5.828299 TCGTCCTGAAAATTTTCACACTT 57.172 34.783 26.01 0.00 41.88 3.16
2085 9061 5.828299 TTCGTCCTGAAAATTTTCACACT 57.172 34.783 26.01 0.00 41.88 3.55
2097 9073 3.306917 TTCAGCGTATTTCGTCCTGAA 57.693 42.857 0.00 0.00 42.05 3.02
2098 9074 3.306917 TTTCAGCGTATTTCGTCCTGA 57.693 42.857 0.00 0.00 42.13 3.86
2099 9075 3.616821 TCATTTCAGCGTATTTCGTCCTG 59.383 43.478 0.00 0.00 42.13 3.86
2100 9076 3.857052 TCATTTCAGCGTATTTCGTCCT 58.143 40.909 0.00 0.00 42.13 3.85
2101 9077 3.001330 CCTCATTTCAGCGTATTTCGTCC 59.999 47.826 0.00 0.00 42.13 4.79
2102 9078 3.544244 GCCTCATTTCAGCGTATTTCGTC 60.544 47.826 0.00 0.00 42.13 4.20
2103 9079 2.351726 GCCTCATTTCAGCGTATTTCGT 59.648 45.455 0.00 0.00 42.13 3.85
2104 9080 2.609459 AGCCTCATTTCAGCGTATTTCG 59.391 45.455 0.00 0.00 43.12 3.46
2105 9081 3.873952 AGAGCCTCATTTCAGCGTATTTC 59.126 43.478 0.00 0.00 0.00 2.17
2106 9082 3.624861 CAGAGCCTCATTTCAGCGTATTT 59.375 43.478 0.00 0.00 0.00 1.40
2107 9083 3.201290 CAGAGCCTCATTTCAGCGTATT 58.799 45.455 0.00 0.00 0.00 1.89
2108 9084 2.831333 CAGAGCCTCATTTCAGCGTAT 58.169 47.619 0.00 0.00 0.00 3.06
2109 9085 1.740380 GCAGAGCCTCATTTCAGCGTA 60.740 52.381 0.00 0.00 0.00 4.42
2110 9086 1.023513 GCAGAGCCTCATTTCAGCGT 61.024 55.000 0.00 0.00 0.00 5.07
2111 9087 1.022982 TGCAGAGCCTCATTTCAGCG 61.023 55.000 0.00 0.00 0.00 5.18
2112 9088 1.171308 TTGCAGAGCCTCATTTCAGC 58.829 50.000 0.00 0.00 0.00 4.26
2113 9089 3.928727 TTTTGCAGAGCCTCATTTCAG 57.071 42.857 0.00 0.00 0.00 3.02
2131 9107 5.372343 AAAAGCCCCAGATTTGTCTTTTT 57.628 34.783 0.00 0.00 31.97 1.94
2132 9108 6.126911 TGTTAAAAGCCCCAGATTTGTCTTTT 60.127 34.615 10.61 10.61 37.47 2.27
2133 9109 5.365314 TGTTAAAAGCCCCAGATTTGTCTTT 59.635 36.000 0.00 0.00 30.45 2.52
2134 9110 4.898861 TGTTAAAAGCCCCAGATTTGTCTT 59.101 37.500 0.00 0.00 30.45 3.01
2135 9111 4.280929 GTGTTAAAAGCCCCAGATTTGTCT 59.719 41.667 0.00 0.00 30.45 3.41
2136 9112 4.038642 TGTGTTAAAAGCCCCAGATTTGTC 59.961 41.667 0.00 0.00 30.45 3.18
2137 9113 3.964031 TGTGTTAAAAGCCCCAGATTTGT 59.036 39.130 0.00 0.00 30.45 2.83
2138 9114 4.599047 TGTGTTAAAAGCCCCAGATTTG 57.401 40.909 0.00 0.00 30.45 2.32
2139 9115 4.837860 TCATGTGTTAAAAGCCCCAGATTT 59.162 37.500 0.00 0.00 31.52 2.17
2140 9116 4.415596 TCATGTGTTAAAAGCCCCAGATT 58.584 39.130 0.00 0.00 0.00 2.40
2141 9117 4.046286 TCATGTGTTAAAAGCCCCAGAT 57.954 40.909 0.00 0.00 0.00 2.90
2142 9118 3.517296 TCATGTGTTAAAAGCCCCAGA 57.483 42.857 0.00 0.00 0.00 3.86
2143 9119 4.949856 AGTATCATGTGTTAAAAGCCCCAG 59.050 41.667 0.00 0.00 0.00 4.45
2144 9120 4.929479 AGTATCATGTGTTAAAAGCCCCA 58.071 39.130 0.00 0.00 0.00 4.96
2145 9121 7.284489 TGAATAGTATCATGTGTTAAAAGCCCC 59.716 37.037 0.00 0.00 0.00 5.80
2146 9122 8.220755 TGAATAGTATCATGTGTTAAAAGCCC 57.779 34.615 0.00 0.00 0.00 5.19
2147 9123 9.884465 GATGAATAGTATCATGTGTTAAAAGCC 57.116 33.333 0.00 0.00 40.08 4.35
2154 9130 9.322773 CTGTGAAGATGAATAGTATCATGTGTT 57.677 33.333 0.00 0.00 40.08 3.32
2155 9131 8.699130 TCTGTGAAGATGAATAGTATCATGTGT 58.301 33.333 0.00 0.00 40.08 3.72
2156 9132 8.976471 GTCTGTGAAGATGAATAGTATCATGTG 58.024 37.037 0.00 0.00 40.08 3.21
2157 9133 8.922237 AGTCTGTGAAGATGAATAGTATCATGT 58.078 33.333 0.00 0.00 40.08 3.21
2164 9140 9.030452 AGTTCTTAGTCTGTGAAGATGAATAGT 57.970 33.333 0.00 0.00 31.91 2.12
2165 9141 9.868277 AAGTTCTTAGTCTGTGAAGATGAATAG 57.132 33.333 0.00 0.00 31.91 1.73
2166 9142 9.645059 CAAGTTCTTAGTCTGTGAAGATGAATA 57.355 33.333 0.00 0.00 31.91 1.75
2167 9143 8.153550 ACAAGTTCTTAGTCTGTGAAGATGAAT 58.846 33.333 0.00 0.00 31.91 2.57
2168 9144 7.500992 ACAAGTTCTTAGTCTGTGAAGATGAA 58.499 34.615 0.00 0.00 31.91 2.57
2169 9145 7.014711 AGACAAGTTCTTAGTCTGTGAAGATGA 59.985 37.037 12.86 0.00 40.83 2.92
2170 9146 7.151308 AGACAAGTTCTTAGTCTGTGAAGATG 58.849 38.462 12.86 0.00 40.83 2.90
2171 9147 7.296628 AGACAAGTTCTTAGTCTGTGAAGAT 57.703 36.000 12.86 0.00 40.83 2.40
2172 9148 6.716934 AGACAAGTTCTTAGTCTGTGAAGA 57.283 37.500 12.86 0.00 40.83 2.87
2173 9149 7.778470 AAAGACAAGTTCTTAGTCTGTGAAG 57.222 36.000 13.74 0.00 44.41 3.02
2174 9150 8.561738 AAAAAGACAAGTTCTTAGTCTGTGAA 57.438 30.769 13.74 0.00 44.41 3.18
2196 9172 7.523219 ACGTTGAAATGCGATCTGTATAAAAA 58.477 30.769 0.00 0.00 0.00 1.94
2197 9173 7.067532 ACGTTGAAATGCGATCTGTATAAAA 57.932 32.000 0.00 0.00 0.00 1.52
2198 9174 6.656314 ACGTTGAAATGCGATCTGTATAAA 57.344 33.333 0.00 0.00 0.00 1.40
2199 9175 7.940178 ATACGTTGAAATGCGATCTGTATAA 57.060 32.000 0.00 0.00 0.00 0.98
2200 9176 7.940178 AATACGTTGAAATGCGATCTGTATA 57.060 32.000 0.00 0.00 0.00 1.47
2201 9177 6.844696 AATACGTTGAAATGCGATCTGTAT 57.155 33.333 0.00 0.00 0.00 2.29
2202 9178 6.311690 TGAAATACGTTGAAATGCGATCTGTA 59.688 34.615 0.00 0.00 0.00 2.74
2203 9179 5.121611 TGAAATACGTTGAAATGCGATCTGT 59.878 36.000 0.00 0.00 0.00 3.41
2204 9180 5.559227 TGAAATACGTTGAAATGCGATCTG 58.441 37.500 0.00 0.00 0.00 2.90
2205 9181 5.794687 TGAAATACGTTGAAATGCGATCT 57.205 34.783 0.00 0.00 0.00 2.75
2206 9182 5.621228 GGATGAAATACGTTGAAATGCGATC 59.379 40.000 0.00 0.00 0.00 3.69
2207 9183 5.296780 AGGATGAAATACGTTGAAATGCGAT 59.703 36.000 0.00 0.00 26.49 4.58
2208 9184 4.634004 AGGATGAAATACGTTGAAATGCGA 59.366 37.500 0.00 0.00 26.49 5.10
2209 9185 4.908736 AGGATGAAATACGTTGAAATGCG 58.091 39.130 0.00 0.00 26.49 4.73
2210 9186 8.682128 TTTTAGGATGAAATACGTTGAAATGC 57.318 30.769 0.00 0.00 26.49 3.56
2225 9201 8.962679 GGGTATGTGTGTAAAATTTTAGGATGA 58.037 33.333 10.92 0.00 0.00 2.92
2226 9202 8.194769 GGGGTATGTGTGTAAAATTTTAGGATG 58.805 37.037 10.92 0.00 0.00 3.51
2227 9203 8.119891 AGGGGTATGTGTGTAAAATTTTAGGAT 58.880 33.333 10.92 2.63 0.00 3.24
2228 9204 7.471890 AGGGGTATGTGTGTAAAATTTTAGGA 58.528 34.615 10.92 0.00 0.00 2.94
2229 9205 7.394923 TGAGGGGTATGTGTGTAAAATTTTAGG 59.605 37.037 10.92 0.00 0.00 2.69
2230 9206 8.241367 GTGAGGGGTATGTGTGTAAAATTTTAG 58.759 37.037 10.92 0.00 0.00 1.85
2231 9207 7.724506 TGTGAGGGGTATGTGTGTAAAATTTTA 59.275 33.333 6.54 6.54 0.00 1.52
2232 9208 6.551601 TGTGAGGGGTATGTGTGTAAAATTTT 59.448 34.615 8.75 8.75 0.00 1.82
2233 9209 6.071984 TGTGAGGGGTATGTGTGTAAAATTT 58.928 36.000 0.00 0.00 0.00 1.82
2234 9210 5.636123 TGTGAGGGGTATGTGTGTAAAATT 58.364 37.500 0.00 0.00 0.00 1.82
2235 9211 5.249780 TGTGAGGGGTATGTGTGTAAAAT 57.750 39.130 0.00 0.00 0.00 1.82
2236 9212 4.708576 TGTGAGGGGTATGTGTGTAAAA 57.291 40.909 0.00 0.00 0.00 1.52
2237 9213 4.323945 GGATGTGAGGGGTATGTGTGTAAA 60.324 45.833 0.00 0.00 0.00 2.01
2238 9214 3.199071 GGATGTGAGGGGTATGTGTGTAA 59.801 47.826 0.00 0.00 0.00 2.41
2239 9215 2.769663 GGATGTGAGGGGTATGTGTGTA 59.230 50.000 0.00 0.00 0.00 2.90
2240 9216 1.559682 GGATGTGAGGGGTATGTGTGT 59.440 52.381 0.00 0.00 0.00 3.72
2241 9217 1.839994 AGGATGTGAGGGGTATGTGTG 59.160 52.381 0.00 0.00 0.00 3.82
2242 9218 2.239654 CAAGGATGTGAGGGGTATGTGT 59.760 50.000 0.00 0.00 0.00 3.72
2243 9219 2.239654 ACAAGGATGTGAGGGGTATGTG 59.760 50.000 0.00 0.00 38.69 3.21
2244 9220 2.562296 ACAAGGATGTGAGGGGTATGT 58.438 47.619 0.00 0.00 38.69 2.29
2245 9221 3.652057 AACAAGGATGTGAGGGGTATG 57.348 47.619 0.00 0.00 40.46 2.39
2246 9222 4.788617 AGTAAACAAGGATGTGAGGGGTAT 59.211 41.667 0.00 0.00 40.46 2.73
2247 9223 4.172807 AGTAAACAAGGATGTGAGGGGTA 58.827 43.478 0.00 0.00 40.46 3.69
2248 9224 2.986728 AGTAAACAAGGATGTGAGGGGT 59.013 45.455 0.00 0.00 40.46 4.95
2249 9225 3.721087 AGTAAACAAGGATGTGAGGGG 57.279 47.619 0.00 0.00 40.46 4.79
2250 9226 4.398319 ACAAGTAAACAAGGATGTGAGGG 58.602 43.478 0.00 0.00 40.46 4.30
2251 9227 5.995282 TGTACAAGTAAACAAGGATGTGAGG 59.005 40.000 0.00 0.00 40.46 3.86
2252 9228 7.490962 TTGTACAAGTAAACAAGGATGTGAG 57.509 36.000 3.59 0.00 40.46 3.51
2253 9229 7.936847 AGATTGTACAAGTAAACAAGGATGTGA 59.063 33.333 14.65 0.00 40.46 3.58
2254 9230 8.099364 AGATTGTACAAGTAAACAAGGATGTG 57.901 34.615 14.65 0.00 40.46 3.21
2255 9231 9.959721 ATAGATTGTACAAGTAAACAAGGATGT 57.040 29.630 14.65 0.00 43.14 3.06
2326 9302 1.256812 CTTCATGGAGGCCGGTTTTT 58.743 50.000 1.90 0.00 0.00 1.94
2327 9303 0.611896 CCTTCATGGAGGCCGGTTTT 60.612 55.000 7.24 0.00 38.35 2.43
2328 9304 1.000896 CCTTCATGGAGGCCGGTTT 60.001 57.895 7.24 0.00 38.35 3.27
2329 9305 2.677228 CCTTCATGGAGGCCGGTT 59.323 61.111 7.24 0.00 38.35 4.44
2335 9311 1.445095 CTCTCGGCCTTCATGGAGG 59.555 63.158 16.65 16.65 39.93 4.30
2336 9312 1.227497 GCTCTCGGCCTTCATGGAG 60.227 63.158 0.00 0.00 38.35 3.86
2337 9313 2.903357 GCTCTCGGCCTTCATGGA 59.097 61.111 0.00 0.00 38.35 3.41
2346 9322 1.298859 ATGTCGTTTTGGCTCTCGGC 61.299 55.000 0.00 0.00 40.90 5.54
2347 9323 1.128692 GAATGTCGTTTTGGCTCTCGG 59.871 52.381 0.00 0.00 0.00 4.63
2348 9324 2.069273 AGAATGTCGTTTTGGCTCTCG 58.931 47.619 0.00 0.00 0.00 4.04
2349 9325 3.330267 AGAGAATGTCGTTTTGGCTCTC 58.670 45.455 0.00 0.00 0.00 3.20
2350 9326 3.409026 AGAGAATGTCGTTTTGGCTCT 57.591 42.857 0.00 0.00 0.00 4.09
2351 9327 3.748568 AGAAGAGAATGTCGTTTTGGCTC 59.251 43.478 0.00 0.00 0.00 4.70
2352 9328 3.744660 AGAAGAGAATGTCGTTTTGGCT 58.255 40.909 0.00 0.00 0.00 4.75
2353 9329 3.498397 TGAGAAGAGAATGTCGTTTTGGC 59.502 43.478 0.00 0.00 0.00 4.52
2354 9330 5.673337 TTGAGAAGAGAATGTCGTTTTGG 57.327 39.130 0.00 0.00 0.00 3.28
2355 9331 6.011879 CGATTGAGAAGAGAATGTCGTTTTG 58.988 40.000 0.00 0.00 0.00 2.44
2356 9332 5.926542 TCGATTGAGAAGAGAATGTCGTTTT 59.073 36.000 0.00 0.00 0.00 2.43
2357 9333 5.470368 TCGATTGAGAAGAGAATGTCGTTT 58.530 37.500 0.00 0.00 0.00 3.60
2358 9334 5.060662 TCGATTGAGAAGAGAATGTCGTT 57.939 39.130 0.00 0.00 0.00 3.85
2359 9335 4.703645 TCGATTGAGAAGAGAATGTCGT 57.296 40.909 0.00 0.00 0.00 4.34
2360 9336 5.098893 AGTTCGATTGAGAAGAGAATGTCG 58.901 41.667 0.00 0.00 0.00 4.35
2361 9337 6.587990 TCAAGTTCGATTGAGAAGAGAATGTC 59.412 38.462 0.00 0.00 34.31 3.06
2362 9338 6.459066 TCAAGTTCGATTGAGAAGAGAATGT 58.541 36.000 0.00 0.00 34.31 2.71
2363 9339 6.957984 TCAAGTTCGATTGAGAAGAGAATG 57.042 37.500 0.00 0.00 34.31 2.67
2364 9340 7.102346 ACATCAAGTTCGATTGAGAAGAGAAT 58.898 34.615 7.47 0.00 42.20 2.40
2365 9341 6.459066 ACATCAAGTTCGATTGAGAAGAGAA 58.541 36.000 7.47 0.00 42.20 2.87
2366 9342 6.030548 ACATCAAGTTCGATTGAGAAGAGA 57.969 37.500 7.47 0.00 42.20 3.10
2367 9343 6.146837 ACAACATCAAGTTCGATTGAGAAGAG 59.853 38.462 7.47 0.48 42.20 2.85
2368 9344 5.991606 ACAACATCAAGTTCGATTGAGAAGA 59.008 36.000 7.47 0.00 42.20 2.87
2539 9554 9.912634 CACAATAGTTTTTGTTGGACTGATTAT 57.087 29.630 0.00 0.00 37.73 1.28
2552 9567 4.436852 CCGACGATCCCACAATAGTTTTTG 60.437 45.833 0.00 0.00 0.00 2.44
2553 9568 3.687698 CCGACGATCCCACAATAGTTTTT 59.312 43.478 0.00 0.00 0.00 1.94
2602 9633 0.250234 CGCTGAGGGAGATGTTTGGA 59.750 55.000 0.00 0.00 0.00 3.53
2626 9657 2.139484 CAGCCTCCTAGAGCCAGGG 61.139 68.421 0.00 0.00 36.26 4.45
2643 9674 0.461870 CCTTGTCGCCCGATTGATCA 60.462 55.000 0.00 0.00 0.00 2.92
2675 9706 3.450457 ACCAAAAACCTCAAGCATGTCAA 59.550 39.130 0.00 0.00 0.00 3.18
2685 9716 3.702792 TGGACTGAAACCAAAAACCTCA 58.297 40.909 0.00 0.00 34.25 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.