Multiple sequence alignment - TraesCS2D01G384700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G384700 chr2D 100.000 2300 0 0 1 2300 489573417 489575716 0.000000e+00 4248.0
1 TraesCS2D01G384700 chr2D 90.157 447 28 8 974 1407 489593585 489594028 3.320000e-158 568.0
2 TraesCS2D01G384700 chr2D 89.835 423 29 6 974 1383 489637575 489637996 4.350000e-147 531.0
3 TraesCS2D01G384700 chr2D 94.186 258 12 2 1346 1603 489594046 489594300 7.700000e-105 390.0
4 TraesCS2D01G384700 chr2D 93.989 183 11 0 1606 1788 489594882 489595064 6.260000e-71 278.0
5 TraesCS2D01G384700 chr2D 86.598 194 10 10 814 995 489637356 489637545 1.390000e-47 200.0
6 TraesCS2D01G384700 chr2A 86.550 1026 78 26 814 1822 633228520 633229502 0.000000e+00 1075.0
7 TraesCS2D01G384700 chr2A 90.447 492 30 5 1332 1822 633223428 633223903 1.160000e-177 632.0
8 TraesCS2D01G384700 chr2A 92.265 362 27 1 974 1334 633223007 633223368 1.580000e-141 512.0
9 TraesCS2D01G384700 chr2A 85.714 182 12 8 814 983 633222786 633222965 1.820000e-41 180.0
10 TraesCS2D01G384700 chr7D 88.127 758 69 16 1 748 637148784 637149530 0.000000e+00 881.0
11 TraesCS2D01G384700 chr7D 86.818 751 70 17 1 737 14555362 14554627 0.000000e+00 811.0
12 TraesCS2D01G384700 chr7D 93.213 442 28 2 1859 2299 460078153 460078593 0.000000e+00 649.0
13 TraesCS2D01G384700 chr6D 87.417 755 68 19 1 735 422220934 422220187 0.000000e+00 843.0
14 TraesCS2D01G384700 chr6D 94.595 444 24 0 1857 2300 402864868 402864425 0.000000e+00 688.0
15 TraesCS2D01G384700 chr5A 87.285 755 73 18 1 738 296306700 296305952 0.000000e+00 841.0
16 TraesCS2D01G384700 chr6A 87.200 750 75 14 1 737 479638256 479638997 0.000000e+00 833.0
17 TraesCS2D01G384700 chr6A 94.344 442 25 0 1859 2300 74888453 74888894 0.000000e+00 678.0
18 TraesCS2D01G384700 chr6A 94.118 442 26 0 1859 2300 74902926 74903367 0.000000e+00 673.0
19 TraesCS2D01G384700 chr7A 86.792 742 82 13 1 735 37286865 37286133 0.000000e+00 813.0
20 TraesCS2D01G384700 chr1A 86.587 753 78 16 1 736 34980057 34980803 0.000000e+00 809.0
21 TraesCS2D01G384700 chr1A 86.631 748 78 17 1 736 565140137 565139400 0.000000e+00 808.0
22 TraesCS2D01G384700 chr3D 86.400 750 84 16 1 738 32504324 32505067 0.000000e+00 804.0
23 TraesCS2D01G384700 chr3D 95.701 442 19 0 1859 2300 536275199 536274758 0.000000e+00 712.0
24 TraesCS2D01G384700 chr3D 92.601 446 29 2 1856 2300 478764820 478765262 2.490000e-179 638.0
25 TraesCS2D01G384700 chr4D 94.382 445 25 0 1856 2300 455830432 455830876 0.000000e+00 684.0
26 TraesCS2D01G384700 chr2B 92.766 470 28 5 1394 1857 573187211 573187680 0.000000e+00 675.0
27 TraesCS2D01G384700 chr2B 91.403 442 26 7 983 1415 573186737 573187175 1.520000e-166 595.0
28 TraesCS2D01G384700 chr2B 92.663 368 25 2 1026 1393 573184027 573184392 1.560000e-146 529.0
29 TraesCS2D01G384700 chr2B 91.081 370 20 2 974 1330 573198208 573198577 2.660000e-134 488.0
30 TraesCS2D01G384700 chr2B 91.961 311 13 5 1520 1822 573198887 573199193 2.110000e-115 425.0
31 TraesCS2D01G384700 chr2B 90.816 294 21 6 1335 1623 573184407 573184699 2.770000e-104 388.0
32 TraesCS2D01G384700 chr2B 90.805 261 20 3 738 994 573182202 573182462 1.690000e-91 346.0
33 TraesCS2D01G384700 chr2B 88.770 187 11 6 814 995 573186515 573186696 1.070000e-53 220.0
34 TraesCS2D01G384700 chr2B 89.011 182 12 6 820 995 573183747 573183926 3.850000e-53 219.0
35 TraesCS2D01G384700 chr2B 87.766 188 15 6 814 995 573197993 573198178 1.790000e-51 213.0
36 TraesCS2D01G384700 chr2B 92.308 52 3 1 981 1031 573182500 573182551 3.170000e-09 73.1
37 TraesCS2D01G384700 chr2B 90.566 53 4 1 974 1025 573183956 573184008 4.100000e-08 69.4
38 TraesCS2D01G384700 chr3B 93.213 442 30 0 1859 2300 498438285 498438726 0.000000e+00 651.0
39 TraesCS2D01G384700 chr1D 93.197 441 30 0 1859 2299 45410829 45411269 0.000000e+00 649.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G384700 chr2D 489573417 489575716 2299 False 4248.000000 4248 100.000000 1 2300 1 chr2D.!!$F1 2299
1 TraesCS2D01G384700 chr2D 489593585 489595064 1479 False 412.000000 568 92.777333 974 1788 3 chr2D.!!$F2 814
2 TraesCS2D01G384700 chr2D 489637356 489637996 640 False 365.500000 531 88.216500 814 1383 2 chr2D.!!$F3 569
3 TraesCS2D01G384700 chr2A 633228520 633229502 982 False 1075.000000 1075 86.550000 814 1822 1 chr2A.!!$F1 1008
4 TraesCS2D01G384700 chr2A 633222786 633223903 1117 False 441.333333 632 89.475333 814 1822 3 chr2A.!!$F2 1008
5 TraesCS2D01G384700 chr7D 637148784 637149530 746 False 881.000000 881 88.127000 1 748 1 chr7D.!!$F2 747
6 TraesCS2D01G384700 chr7D 14554627 14555362 735 True 811.000000 811 86.818000 1 737 1 chr7D.!!$R1 736
7 TraesCS2D01G384700 chr6D 422220187 422220934 747 True 843.000000 843 87.417000 1 735 1 chr6D.!!$R2 734
8 TraesCS2D01G384700 chr5A 296305952 296306700 748 True 841.000000 841 87.285000 1 738 1 chr5A.!!$R1 737
9 TraesCS2D01G384700 chr6A 479638256 479638997 741 False 833.000000 833 87.200000 1 737 1 chr6A.!!$F3 736
10 TraesCS2D01G384700 chr7A 37286133 37286865 732 True 813.000000 813 86.792000 1 735 1 chr7A.!!$R1 734
11 TraesCS2D01G384700 chr1A 34980057 34980803 746 False 809.000000 809 86.587000 1 736 1 chr1A.!!$F1 735
12 TraesCS2D01G384700 chr1A 565139400 565140137 737 True 808.000000 808 86.631000 1 736 1 chr1A.!!$R1 735
13 TraesCS2D01G384700 chr3D 32504324 32505067 743 False 804.000000 804 86.400000 1 738 1 chr3D.!!$F1 737
14 TraesCS2D01G384700 chr2B 573197993 573199193 1200 False 375.333333 488 90.269333 814 1822 3 chr2B.!!$F2 1008
15 TraesCS2D01G384700 chr2B 573182202 573187680 5478 False 346.055556 675 91.012000 738 1857 9 chr2B.!!$F1 1119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 818 0.108019 CCCCGGTCCAAATAGGCTAC 59.892 60.0 0.0 0.0 37.29 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 7353 0.103208 AATCTCCTCGACGACATGGC 59.897 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 100 1.469335 TTCGTTTCCGAGGAGGCACT 61.469 55.000 0.00 0.00 45.24 4.40
107 112 2.031163 GGCACTGCCGTGACTCTT 59.969 61.111 12.93 0.00 46.01 2.85
164 169 2.839202 GTGACTCTCGCGAAAGAAAC 57.161 50.000 17.91 9.82 0.00 2.78
475 504 1.281656 CGGAAGCAAAACCGTGACC 59.718 57.895 0.00 0.00 43.53 4.02
480 509 1.595929 GCAAAACCGTGACCCTCGA 60.596 57.895 0.00 0.00 0.00 4.04
484 513 0.317479 AAACCGTGACCCTCGAGAAG 59.683 55.000 15.71 7.49 0.00 2.85
493 529 3.145228 CCTCGAGAAGGGAAACAGC 57.855 57.895 15.71 0.00 42.03 4.40
740 794 5.611796 TCGTTAACTAGTTGCTCTCGTTA 57.388 39.130 18.56 0.00 34.60 3.18
741 795 5.625251 TCGTTAACTAGTTGCTCTCGTTAG 58.375 41.667 18.56 0.00 36.28 2.34
743 797 5.855395 CGTTAACTAGTTGCTCTCGTTAGTT 59.145 40.000 18.56 0.00 36.28 2.24
744 798 6.183359 CGTTAACTAGTTGCTCTCGTTAGTTG 60.183 42.308 18.56 0.00 36.28 3.16
764 818 0.108019 CCCCGGTCCAAATAGGCTAC 59.892 60.000 0.00 0.00 37.29 3.58
776 830 4.379174 GGCTACGTATGGGCCATG 57.621 61.111 29.14 15.60 44.69 3.66
810 864 2.722201 GGCCGTCGAACTCCATCCT 61.722 63.158 0.00 0.00 0.00 3.24
817 871 3.718815 GTCGAACTCCATCCTACAATCC 58.281 50.000 0.00 0.00 0.00 3.01
877 931 2.522638 CGCCAAGAACCGATACCGC 61.523 63.158 0.00 0.00 0.00 5.68
878 932 2.178235 GCCAAGAACCGATACCGCC 61.178 63.158 0.00 0.00 0.00 6.13
891 959 4.109675 CCGCCCCGAGGTTCCATT 62.110 66.667 0.00 0.00 34.57 3.16
894 962 0.179029 CGCCCCGAGGTTCCATTTAT 60.179 55.000 0.00 0.00 34.57 1.40
948 2480 5.010012 ACCACTTTGCGAGATTTTCTGATTT 59.990 36.000 0.00 0.00 0.00 2.17
966 2502 4.956700 TGATTTGAGACCTAGATCCGTCTT 59.043 41.667 8.61 0.00 39.44 3.01
1156 5530 2.747855 CCAAGGCCAAGACGGAGC 60.748 66.667 5.01 0.00 36.56 4.70
1157 5531 3.121030 CAAGGCCAAGACGGAGCG 61.121 66.667 5.01 0.00 36.56 5.03
1383 5763 9.742144 GGTAGTAATTGATGGACTCTAGAGATA 57.258 37.037 26.57 11.66 0.00 1.98
1495 5953 6.294473 AGAGATAGATCGCAAATCCATGTTT 58.706 36.000 0.00 0.00 0.00 2.83
1542 6187 3.463944 TCTCTTTGGAAACAGACGAACC 58.536 45.455 0.00 0.00 44.54 3.62
1593 6238 3.257873 TGTTGCATATTTGACCCCAGTTG 59.742 43.478 0.00 0.00 0.00 3.16
1615 6841 3.704061 GAGTAGACAGAGCTTCCCAATCT 59.296 47.826 0.00 0.00 0.00 2.40
1658 6884 4.442706 AGTAGGGTCGATGCATTTTACAG 58.557 43.478 0.00 0.00 0.00 2.74
1747 6983 8.096621 TCTATATATCCAACAAGGGAACAACA 57.903 34.615 0.00 0.00 41.12 3.33
1768 7004 6.048732 ACAAAAACCTCCTGTGTTCATTTT 57.951 33.333 0.00 0.00 0.00 1.82
1773 7009 3.256631 ACCTCCTGTGTTCATTTTCATGC 59.743 43.478 0.00 0.00 0.00 4.06
1797 7033 4.684703 CGTAATCAGTCCAAAGAAGAACGT 59.315 41.667 0.00 0.00 0.00 3.99
1828 7066 3.135348 CCAGCTATTGTGGGATTGAGAGA 59.865 47.826 0.00 0.00 0.00 3.10
1830 7068 3.135530 AGCTATTGTGGGATTGAGAGACC 59.864 47.826 0.00 0.00 0.00 3.85
1857 7095 3.583840 GCATTTGCCTGCAGAGCATCTA 61.584 50.000 24.38 15.73 41.87 1.98
1858 7096 4.861202 GCATTTGCCTGCAGAGCATCTAT 61.861 47.826 24.38 16.86 41.87 1.98
1859 7097 6.290345 GCATTTGCCTGCAGAGCATCTATT 62.290 45.833 24.38 8.88 41.87 1.73
1875 7113 9.909644 GAGCATCTATTGAAAATATGAGCAATT 57.090 29.630 0.00 0.00 33.45 2.32
1884 7122 8.854979 TGAAAATATGAGCAATTTACCGAATG 57.145 30.769 0.00 0.00 0.00 2.67
1885 7123 8.681806 TGAAAATATGAGCAATTTACCGAATGA 58.318 29.630 0.00 0.00 0.00 2.57
1886 7124 9.683069 GAAAATATGAGCAATTTACCGAATGAT 57.317 29.630 0.00 0.00 0.00 2.45
1917 7155 7.772332 AACAGAAATACTAGATAAAGCACGG 57.228 36.000 0.00 0.00 0.00 4.94
1918 7156 6.875076 ACAGAAATACTAGATAAAGCACGGT 58.125 36.000 0.00 0.00 0.00 4.83
1919 7157 7.328737 ACAGAAATACTAGATAAAGCACGGTT 58.671 34.615 0.00 0.00 0.00 4.44
1920 7158 8.472413 ACAGAAATACTAGATAAAGCACGGTTA 58.528 33.333 0.00 0.00 0.00 2.85
1921 7159 8.969267 CAGAAATACTAGATAAAGCACGGTTAG 58.031 37.037 0.00 0.00 0.00 2.34
1922 7160 8.693625 AGAAATACTAGATAAAGCACGGTTAGT 58.306 33.333 0.00 0.00 0.00 2.24
1923 7161 9.956720 GAAATACTAGATAAAGCACGGTTAGTA 57.043 33.333 0.00 0.00 0.00 1.82
1927 7165 7.592051 ACTAGATAAAGCACGGTTAGTATAGC 58.408 38.462 0.00 0.00 0.00 2.97
1928 7166 6.401047 AGATAAAGCACGGTTAGTATAGCA 57.599 37.500 0.00 0.00 0.00 3.49
1929 7167 6.448006 AGATAAAGCACGGTTAGTATAGCAG 58.552 40.000 0.00 0.00 0.00 4.24
1930 7168 4.467198 AAAGCACGGTTAGTATAGCAGT 57.533 40.909 0.00 0.00 29.35 4.40
1931 7169 3.438297 AGCACGGTTAGTATAGCAGTG 57.562 47.619 0.00 0.87 46.94 3.66
1933 7171 4.099573 AAGCACGGTTAGTATAGCAGTGAT 59.900 41.667 7.80 0.00 46.49 3.06
1934 7172 5.301045 AAGCACGGTTAGTATAGCAGTGATA 59.699 40.000 7.80 0.00 44.26 2.15
1935 7173 6.183360 AAGCACGGTTAGTATAGCAGTGATAA 60.183 38.462 7.80 0.00 44.26 1.75
1936 7174 7.632028 AAGCACGGTTAGTATAGCAGTGATAAA 60.632 37.037 7.80 0.00 44.26 1.40
1938 7176 7.998753 ACGGTTAGTATAGCAGTGATAAAAC 57.001 36.000 0.00 0.00 28.16 2.43
1939 7177 7.549839 ACGGTTAGTATAGCAGTGATAAAACA 58.450 34.615 0.00 0.00 28.16 2.83
1940 7178 8.036575 ACGGTTAGTATAGCAGTGATAAAACAA 58.963 33.333 0.00 0.00 28.16 2.83
1941 7179 8.875803 CGGTTAGTATAGCAGTGATAAAACAAA 58.124 33.333 0.00 0.00 0.00 2.83
1947 7185 9.173939 GTATAGCAGTGATAAAACAAATCATGC 57.826 33.333 0.00 10.08 37.71 4.06
1948 7186 5.097529 AGCAGTGATAAAACAAATCATGCG 58.902 37.500 0.00 0.00 39.78 4.73
1949 7187 5.094812 GCAGTGATAAAACAAATCATGCGA 58.905 37.500 0.00 0.00 35.87 5.10
1950 7188 5.745294 GCAGTGATAAAACAAATCATGCGAT 59.255 36.000 0.00 0.00 35.87 4.58
1951 7189 6.254157 GCAGTGATAAAACAAATCATGCGATT 59.746 34.615 0.00 0.00 43.94 3.34
1962 7200 5.885230 AATCATGCGATTTGACAAAGAGA 57.115 34.783 6.77 0.00 38.80 3.10
1963 7201 5.885230 ATCATGCGATTTGACAAAGAGAA 57.115 34.783 6.77 0.00 0.00 2.87
1964 7202 5.287170 TCATGCGATTTGACAAAGAGAAG 57.713 39.130 6.77 0.00 0.00 2.85
1965 7203 4.154737 TCATGCGATTTGACAAAGAGAAGG 59.845 41.667 6.77 0.00 0.00 3.46
1966 7204 3.476552 TGCGATTTGACAAAGAGAAGGT 58.523 40.909 6.77 0.00 0.00 3.50
1967 7205 4.637276 TGCGATTTGACAAAGAGAAGGTA 58.363 39.130 6.77 0.00 0.00 3.08
1968 7206 5.060506 TGCGATTTGACAAAGAGAAGGTAA 58.939 37.500 6.77 0.00 0.00 2.85
1969 7207 5.529430 TGCGATTTGACAAAGAGAAGGTAAA 59.471 36.000 6.77 0.00 0.00 2.01
1970 7208 5.851703 GCGATTTGACAAAGAGAAGGTAAAC 59.148 40.000 6.77 0.00 0.00 2.01
1971 7209 6.512741 GCGATTTGACAAAGAGAAGGTAAACA 60.513 38.462 6.77 0.00 0.00 2.83
1972 7210 7.414436 CGATTTGACAAAGAGAAGGTAAACAA 58.586 34.615 6.77 0.00 0.00 2.83
1973 7211 7.376072 CGATTTGACAAAGAGAAGGTAAACAAC 59.624 37.037 6.77 0.00 0.00 3.32
1974 7212 7.455641 TTTGACAAAGAGAAGGTAAACAACA 57.544 32.000 0.00 0.00 0.00 3.33
1975 7213 7.639113 TTGACAAAGAGAAGGTAAACAACAT 57.361 32.000 0.00 0.00 0.00 2.71
1976 7214 7.259290 TGACAAAGAGAAGGTAAACAACATC 57.741 36.000 0.00 0.00 0.00 3.06
1977 7215 7.054124 TGACAAAGAGAAGGTAAACAACATCT 58.946 34.615 0.00 0.00 0.00 2.90
1978 7216 7.012327 TGACAAAGAGAAGGTAAACAACATCTG 59.988 37.037 0.00 0.00 0.00 2.90
1979 7217 5.948992 AAGAGAAGGTAAACAACATCTGC 57.051 39.130 0.00 0.00 0.00 4.26
1980 7218 4.973168 AGAGAAGGTAAACAACATCTGCA 58.027 39.130 0.00 0.00 0.00 4.41
1981 7219 5.564550 AGAGAAGGTAAACAACATCTGCAT 58.435 37.500 0.00 0.00 0.00 3.96
1982 7220 6.711277 AGAGAAGGTAAACAACATCTGCATA 58.289 36.000 0.00 0.00 0.00 3.14
1983 7221 7.341805 AGAGAAGGTAAACAACATCTGCATAT 58.658 34.615 0.00 0.00 0.00 1.78
1984 7222 8.486210 AGAGAAGGTAAACAACATCTGCATATA 58.514 33.333 0.00 0.00 0.00 0.86
1985 7223 9.277783 GAGAAGGTAAACAACATCTGCATATAT 57.722 33.333 0.00 0.00 0.00 0.86
1986 7224 9.060347 AGAAGGTAAACAACATCTGCATATATG 57.940 33.333 8.45 8.45 0.00 1.78
1987 7225 8.978874 AAGGTAAACAACATCTGCATATATGA 57.021 30.769 17.10 1.24 0.00 2.15
1988 7226 8.978874 AGGTAAACAACATCTGCATATATGAA 57.021 30.769 17.10 4.90 0.00 2.57
1989 7227 8.840321 AGGTAAACAACATCTGCATATATGAAC 58.160 33.333 17.10 0.19 0.00 3.18
1990 7228 8.840321 GGTAAACAACATCTGCATATATGAACT 58.160 33.333 17.10 0.00 0.00 3.01
1993 7231 9.836864 AAACAACATCTGCATATATGAACTAGA 57.163 29.630 17.10 12.79 0.00 2.43
1994 7232 9.836864 AACAACATCTGCATATATGAACTAGAA 57.163 29.630 17.10 0.00 0.00 2.10
1995 7233 9.265901 ACAACATCTGCATATATGAACTAGAAC 57.734 33.333 17.10 0.00 0.00 3.01
1996 7234 8.715998 CAACATCTGCATATATGAACTAGAACC 58.284 37.037 17.10 0.00 0.00 3.62
1997 7235 7.093354 ACATCTGCATATATGAACTAGAACCG 58.907 38.462 17.10 8.79 0.00 4.44
1998 7236 6.894339 TCTGCATATATGAACTAGAACCGA 57.106 37.500 17.10 0.00 0.00 4.69
1999 7237 7.284919 TCTGCATATATGAACTAGAACCGAA 57.715 36.000 17.10 0.00 0.00 4.30
2000 7238 7.145985 TCTGCATATATGAACTAGAACCGAAC 58.854 38.462 17.10 0.00 0.00 3.95
2001 7239 6.811954 TGCATATATGAACTAGAACCGAACA 58.188 36.000 17.10 0.00 0.00 3.18
2002 7240 6.700081 TGCATATATGAACTAGAACCGAACAC 59.300 38.462 17.10 0.00 0.00 3.32
2003 7241 6.700081 GCATATATGAACTAGAACCGAACACA 59.300 38.462 17.10 0.00 0.00 3.72
2004 7242 7.385205 GCATATATGAACTAGAACCGAACACAT 59.615 37.037 17.10 0.00 0.00 3.21
2005 7243 8.916654 CATATATGAACTAGAACCGAACACATC 58.083 37.037 6.92 0.00 0.00 3.06
2006 7244 4.866508 TGAACTAGAACCGAACACATCT 57.133 40.909 0.00 0.00 0.00 2.90
2007 7245 5.970317 TGAACTAGAACCGAACACATCTA 57.030 39.130 0.00 0.00 0.00 1.98
2008 7246 5.950883 TGAACTAGAACCGAACACATCTAG 58.049 41.667 0.00 7.03 44.39 2.43
2009 7247 5.708697 TGAACTAGAACCGAACACATCTAGA 59.291 40.000 13.85 0.00 42.48 2.43
2010 7248 6.208007 TGAACTAGAACCGAACACATCTAGAA 59.792 38.462 13.85 0.00 42.48 2.10
2011 7249 5.952033 ACTAGAACCGAACACATCTAGAAC 58.048 41.667 13.85 0.00 42.48 3.01
2012 7250 4.866508 AGAACCGAACACATCTAGAACA 57.133 40.909 0.00 0.00 0.00 3.18
2013 7251 4.810790 AGAACCGAACACATCTAGAACAG 58.189 43.478 0.00 0.00 0.00 3.16
2014 7252 4.523173 AGAACCGAACACATCTAGAACAGA 59.477 41.667 0.00 0.00 37.79 3.41
2015 7253 4.175787 ACCGAACACATCTAGAACAGAC 57.824 45.455 0.00 0.00 35.62 3.51
2016 7254 3.572682 ACCGAACACATCTAGAACAGACA 59.427 43.478 0.00 0.00 35.62 3.41
2017 7255 3.921021 CCGAACACATCTAGAACAGACAC 59.079 47.826 0.00 0.00 35.62 3.67
2018 7256 4.321304 CCGAACACATCTAGAACAGACACT 60.321 45.833 0.00 0.00 35.62 3.55
2019 7257 5.106277 CCGAACACATCTAGAACAGACACTA 60.106 44.000 0.00 0.00 35.62 2.74
2020 7258 6.024664 CGAACACATCTAGAACAGACACTAG 58.975 44.000 0.00 0.00 35.62 2.57
2021 7259 6.128254 CGAACACATCTAGAACAGACACTAGA 60.128 42.308 0.00 0.00 45.58 2.43
2022 7260 6.751514 ACACATCTAGAACAGACACTAGAG 57.248 41.667 0.00 0.00 45.01 2.43
2023 7261 5.124776 ACACATCTAGAACAGACACTAGAGC 59.875 44.000 0.00 0.00 45.01 4.09
2024 7262 5.124617 CACATCTAGAACAGACACTAGAGCA 59.875 44.000 0.00 0.00 45.01 4.26
2025 7263 5.712446 ACATCTAGAACAGACACTAGAGCAA 59.288 40.000 0.00 0.00 45.01 3.91
2026 7264 5.888691 TCTAGAACAGACACTAGAGCAAG 57.111 43.478 0.00 0.00 39.71 4.01
2027 7265 5.561679 TCTAGAACAGACACTAGAGCAAGA 58.438 41.667 0.00 0.00 39.71 3.02
2028 7266 6.004574 TCTAGAACAGACACTAGAGCAAGAA 58.995 40.000 0.00 0.00 39.71 2.52
2029 7267 5.132897 AGAACAGACACTAGAGCAAGAAG 57.867 43.478 0.00 0.00 0.00 2.85
2030 7268 4.586841 AGAACAGACACTAGAGCAAGAAGT 59.413 41.667 0.00 0.00 0.00 3.01
2031 7269 4.946478 ACAGACACTAGAGCAAGAAGTT 57.054 40.909 0.00 0.00 0.00 2.66
2032 7270 4.626042 ACAGACACTAGAGCAAGAAGTTG 58.374 43.478 0.00 0.00 36.67 3.16
2033 7271 4.100189 ACAGACACTAGAGCAAGAAGTTGT 59.900 41.667 0.00 0.00 35.92 3.32
2034 7272 4.447054 CAGACACTAGAGCAAGAAGTTGTG 59.553 45.833 0.00 0.00 35.92 3.33
2035 7273 4.342378 AGACACTAGAGCAAGAAGTTGTGA 59.658 41.667 0.00 0.00 35.92 3.58
2036 7274 4.372656 ACACTAGAGCAAGAAGTTGTGAC 58.627 43.478 0.00 0.00 35.92 3.67
2037 7275 4.141937 ACACTAGAGCAAGAAGTTGTGACA 60.142 41.667 0.00 0.00 35.92 3.58
2038 7276 4.447054 CACTAGAGCAAGAAGTTGTGACAG 59.553 45.833 0.00 0.00 35.92 3.51
2039 7277 3.827008 AGAGCAAGAAGTTGTGACAGA 57.173 42.857 0.00 0.00 35.92 3.41
2040 7278 4.142609 AGAGCAAGAAGTTGTGACAGAA 57.857 40.909 0.00 0.00 35.92 3.02
2041 7279 3.873952 AGAGCAAGAAGTTGTGACAGAAC 59.126 43.478 7.37 7.37 35.92 3.01
2042 7280 2.945668 AGCAAGAAGTTGTGACAGAACC 59.054 45.455 11.58 0.00 35.92 3.62
2043 7281 2.945668 GCAAGAAGTTGTGACAGAACCT 59.054 45.455 11.58 0.00 35.92 3.50
2044 7282 3.002759 GCAAGAAGTTGTGACAGAACCTC 59.997 47.826 11.58 8.69 35.92 3.85
2045 7283 4.446371 CAAGAAGTTGTGACAGAACCTCT 58.554 43.478 11.58 10.79 0.00 3.69
2046 7284 5.601662 CAAGAAGTTGTGACAGAACCTCTA 58.398 41.667 14.94 0.00 0.00 2.43
2047 7285 5.871396 AGAAGTTGTGACAGAACCTCTAA 57.129 39.130 13.42 0.00 0.00 2.10
2048 7286 6.426646 AGAAGTTGTGACAGAACCTCTAAT 57.573 37.500 13.42 0.00 0.00 1.73
2049 7287 7.540474 AGAAGTTGTGACAGAACCTCTAATA 57.460 36.000 13.42 0.00 0.00 0.98
2050 7288 7.607250 AGAAGTTGTGACAGAACCTCTAATAG 58.393 38.462 13.42 0.00 0.00 1.73
2066 7304 6.896021 TCTAATAGGAAGAGTATGGGAACG 57.104 41.667 0.00 0.00 0.00 3.95
2067 7305 6.371278 TCTAATAGGAAGAGTATGGGAACGT 58.629 40.000 0.00 0.00 0.00 3.99
2068 7306 7.520798 TCTAATAGGAAGAGTATGGGAACGTA 58.479 38.462 0.00 0.00 0.00 3.57
2076 7314 2.476821 GTATGGGAACGTACGGAATGG 58.523 52.381 21.06 0.00 42.54 3.16
2077 7315 0.179468 ATGGGAACGTACGGAATGGG 59.821 55.000 21.06 0.00 0.00 4.00
2078 7316 0.903924 TGGGAACGTACGGAATGGGA 60.904 55.000 21.06 0.00 0.00 4.37
2079 7317 0.179092 GGGAACGTACGGAATGGGAG 60.179 60.000 21.06 0.00 0.00 4.30
2080 7318 0.808847 GGAACGTACGGAATGGGAGC 60.809 60.000 21.06 0.00 0.00 4.70
2081 7319 0.108520 GAACGTACGGAATGGGAGCA 60.109 55.000 21.06 0.00 0.00 4.26
2082 7320 0.108329 AACGTACGGAATGGGAGCAG 60.108 55.000 21.06 0.00 0.00 4.24
2083 7321 0.968901 ACGTACGGAATGGGAGCAGA 60.969 55.000 21.06 0.00 0.00 4.26
2084 7322 0.389391 CGTACGGAATGGGAGCAGAT 59.611 55.000 7.57 0.00 0.00 2.90
2085 7323 1.869754 CGTACGGAATGGGAGCAGATG 60.870 57.143 7.57 0.00 0.00 2.90
2086 7324 0.106708 TACGGAATGGGAGCAGATGC 59.893 55.000 0.00 0.00 42.49 3.91
2087 7325 1.153107 CGGAATGGGAGCAGATGCA 60.153 57.895 7.68 0.00 45.16 3.96
2088 7326 1.442526 CGGAATGGGAGCAGATGCAC 61.443 60.000 7.68 0.06 45.16 4.57
2096 7334 2.846039 GAGCAGATGCACCAATCTTG 57.154 50.000 7.68 0.00 45.16 3.02
2097 7335 1.404391 GAGCAGATGCACCAATCTTGG 59.596 52.381 7.68 7.42 45.89 3.61
2098 7336 1.958549 AGCAGATGCACCAATCTTGGG 60.959 52.381 13.32 3.95 45.24 4.12
2105 7343 4.319133 CCAATCTTGGGGTCGGTG 57.681 61.111 0.73 0.00 44.70 4.94
2106 7344 1.378762 CCAATCTTGGGGTCGGTGT 59.621 57.895 0.73 0.00 44.70 4.16
2107 7345 0.676782 CCAATCTTGGGGTCGGTGTC 60.677 60.000 0.73 0.00 44.70 3.67
2108 7346 0.676782 CAATCTTGGGGTCGGTGTCC 60.677 60.000 0.00 0.00 0.00 4.02
2109 7347 0.840722 AATCTTGGGGTCGGTGTCCT 60.841 55.000 0.00 0.00 0.00 3.85
2110 7348 1.265454 ATCTTGGGGTCGGTGTCCTC 61.265 60.000 0.00 0.00 0.00 3.71
2111 7349 3.296709 CTTGGGGTCGGTGTCCTCG 62.297 68.421 0.00 0.00 0.00 4.63
2114 7352 2.753043 GGGTCGGTGTCCTCGCTA 60.753 66.667 0.00 0.00 0.00 4.26
2115 7353 2.772691 GGGTCGGTGTCCTCGCTAG 61.773 68.421 0.00 0.00 0.00 3.42
2116 7354 2.102553 GTCGGTGTCCTCGCTAGC 59.897 66.667 4.06 4.06 0.00 3.42
2117 7355 3.138798 TCGGTGTCCTCGCTAGCC 61.139 66.667 9.66 0.00 0.00 3.93
2118 7356 3.449227 CGGTGTCCTCGCTAGCCA 61.449 66.667 9.66 0.00 0.00 4.75
2119 7357 2.786495 CGGTGTCCTCGCTAGCCAT 61.786 63.158 9.66 0.00 0.00 4.40
2120 7358 1.227380 GGTGTCCTCGCTAGCCATG 60.227 63.158 9.66 0.00 0.00 3.66
2121 7359 1.517832 GTGTCCTCGCTAGCCATGT 59.482 57.895 9.66 0.00 0.00 3.21
2122 7360 0.528684 GTGTCCTCGCTAGCCATGTC 60.529 60.000 9.66 0.00 0.00 3.06
2123 7361 1.299468 GTCCTCGCTAGCCATGTCG 60.299 63.158 9.66 0.00 0.00 4.35
2124 7362 1.753078 TCCTCGCTAGCCATGTCGT 60.753 57.895 9.66 0.00 0.00 4.34
2125 7363 1.299468 CCTCGCTAGCCATGTCGTC 60.299 63.158 9.66 0.00 0.00 4.20
2126 7364 1.655654 CTCGCTAGCCATGTCGTCG 60.656 63.158 9.66 0.00 0.00 5.12
2127 7365 2.048312 CTCGCTAGCCATGTCGTCGA 62.048 60.000 9.66 0.00 0.00 4.20
2128 7366 1.655654 CGCTAGCCATGTCGTCGAG 60.656 63.158 9.66 0.00 0.00 4.04
2129 7367 1.299468 GCTAGCCATGTCGTCGAGG 60.299 63.158 2.29 0.00 0.00 4.63
2130 7368 1.725557 GCTAGCCATGTCGTCGAGGA 61.726 60.000 2.29 3.17 0.00 3.71
2131 7369 0.309302 CTAGCCATGTCGTCGAGGAG 59.691 60.000 8.30 0.00 0.00 3.69
2132 7370 0.107361 TAGCCATGTCGTCGAGGAGA 60.107 55.000 8.30 7.85 0.00 3.71
2133 7371 0.753479 AGCCATGTCGTCGAGGAGAT 60.753 55.000 11.57 11.57 0.00 2.75
2134 7372 0.103208 GCCATGTCGTCGAGGAGATT 59.897 55.000 14.37 0.00 0.00 2.40
2135 7373 1.845266 CCATGTCGTCGAGGAGATTG 58.155 55.000 14.37 8.27 0.00 2.67
2136 7374 1.135139 CCATGTCGTCGAGGAGATTGT 59.865 52.381 14.37 0.00 0.00 2.71
2137 7375 2.455032 CATGTCGTCGAGGAGATTGTC 58.545 52.381 14.37 0.08 0.00 3.18
2138 7376 0.446616 TGTCGTCGAGGAGATTGTCG 59.553 55.000 8.30 0.00 37.54 4.35
2139 7377 0.725686 GTCGTCGAGGAGATTGTCGA 59.274 55.000 8.30 0.00 42.74 4.20
2142 7380 2.850439 TCGAGGAGATTGTCGACGT 58.150 52.632 11.62 1.47 40.19 4.34
2143 7381 1.162698 TCGAGGAGATTGTCGACGTT 58.837 50.000 11.62 0.00 40.19 3.99
2144 7382 1.135774 TCGAGGAGATTGTCGACGTTG 60.136 52.381 11.62 0.00 40.19 4.10
2145 7383 1.630148 GAGGAGATTGTCGACGTTGG 58.370 55.000 11.62 0.00 0.00 3.77
2146 7384 0.246635 AGGAGATTGTCGACGTTGGG 59.753 55.000 11.62 0.00 0.00 4.12
2147 7385 0.739813 GGAGATTGTCGACGTTGGGG 60.740 60.000 11.62 0.00 0.00 4.96
2148 7386 0.245539 GAGATTGTCGACGTTGGGGA 59.754 55.000 11.62 0.00 0.00 4.81
2149 7387 0.682852 AGATTGTCGACGTTGGGGAA 59.317 50.000 11.62 0.00 0.00 3.97
2150 7388 1.076332 GATTGTCGACGTTGGGGAAG 58.924 55.000 11.62 0.00 0.00 3.46
2151 7389 0.395312 ATTGTCGACGTTGGGGAAGT 59.605 50.000 11.62 0.00 0.00 3.01
2152 7390 1.039068 TTGTCGACGTTGGGGAAGTA 58.961 50.000 11.62 0.00 0.00 2.24
2153 7391 0.599558 TGTCGACGTTGGGGAAGTAG 59.400 55.000 11.62 0.00 0.00 2.57
2154 7392 0.600057 GTCGACGTTGGGGAAGTAGT 59.400 55.000 0.00 0.00 0.00 2.73
2155 7393 0.883833 TCGACGTTGGGGAAGTAGTC 59.116 55.000 2.20 0.00 0.00 2.59
2156 7394 0.455633 CGACGTTGGGGAAGTAGTCG 60.456 60.000 0.00 1.51 43.79 4.18
2157 7395 0.600057 GACGTTGGGGAAGTAGTCGT 59.400 55.000 0.00 0.00 0.00 4.34
2158 7396 0.600057 ACGTTGGGGAAGTAGTCGTC 59.400 55.000 0.00 0.00 0.00 4.20
2159 7397 0.455633 CGTTGGGGAAGTAGTCGTCG 60.456 60.000 0.00 0.00 0.00 5.12
2160 7398 0.108945 GTTGGGGAAGTAGTCGTCGG 60.109 60.000 0.00 0.00 0.00 4.79
2161 7399 0.251297 TTGGGGAAGTAGTCGTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
2162 7400 0.679002 TGGGGAAGTAGTCGTCGGAG 60.679 60.000 0.00 0.00 0.00 4.63
2163 7401 0.679321 GGGGAAGTAGTCGTCGGAGT 60.679 60.000 0.00 0.00 0.00 3.85
2164 7402 0.731994 GGGAAGTAGTCGTCGGAGTC 59.268 60.000 0.00 0.00 0.00 3.36
2165 7403 0.731994 GGAAGTAGTCGTCGGAGTCC 59.268 60.000 0.00 0.00 0.00 3.85
2196 7434 3.808116 TGACGAAGAAGTCAGTAGTCG 57.192 47.619 0.00 0.00 45.18 4.18
2197 7435 2.095869 TGACGAAGAAGTCAGTAGTCGC 60.096 50.000 0.00 0.00 45.18 5.19
2198 7436 1.136029 ACGAAGAAGTCAGTAGTCGCG 60.136 52.381 0.00 0.00 31.89 5.87
2199 7437 1.261097 GAAGAAGTCAGTAGTCGCGC 58.739 55.000 0.00 0.00 0.00 6.86
2200 7438 0.882474 AAGAAGTCAGTAGTCGCGCT 59.118 50.000 5.56 4.52 0.00 5.92
2201 7439 0.169230 AGAAGTCAGTAGTCGCGCTG 59.831 55.000 5.56 2.62 0.00 5.18
2202 7440 0.168348 GAAGTCAGTAGTCGCGCTGA 59.832 55.000 5.56 9.67 39.17 4.26
2203 7441 0.169230 AAGTCAGTAGTCGCGCTGAG 59.831 55.000 13.40 4.10 41.71 3.35
2204 7442 1.870016 GTCAGTAGTCGCGCTGAGC 60.870 63.158 13.40 0.00 41.71 4.26
2215 7453 2.672996 GCTGAGCGCTCCCCAAAA 60.673 61.111 33.23 13.67 35.14 2.44
2216 7454 2.268076 GCTGAGCGCTCCCCAAAAA 61.268 57.895 33.23 12.91 35.14 1.94
2217 7455 1.581447 CTGAGCGCTCCCCAAAAAC 59.419 57.895 33.23 7.51 0.00 2.43
2218 7456 1.866853 CTGAGCGCTCCCCAAAAACC 61.867 60.000 33.23 6.71 0.00 3.27
2219 7457 1.603739 GAGCGCTCCCCAAAAACCT 60.604 57.895 27.22 0.00 0.00 3.50
2220 7458 1.152546 AGCGCTCCCCAAAAACCTT 60.153 52.632 2.64 0.00 0.00 3.50
2221 7459 0.111639 AGCGCTCCCCAAAAACCTTA 59.888 50.000 2.64 0.00 0.00 2.69
2222 7460 1.182667 GCGCTCCCCAAAAACCTTAT 58.817 50.000 0.00 0.00 0.00 1.73
2223 7461 1.134367 GCGCTCCCCAAAAACCTTATC 59.866 52.381 0.00 0.00 0.00 1.75
2224 7462 2.442413 CGCTCCCCAAAAACCTTATCA 58.558 47.619 0.00 0.00 0.00 2.15
2225 7463 2.163613 CGCTCCCCAAAAACCTTATCAC 59.836 50.000 0.00 0.00 0.00 3.06
2226 7464 2.496070 GCTCCCCAAAAACCTTATCACC 59.504 50.000 0.00 0.00 0.00 4.02
2227 7465 3.096852 CTCCCCAAAAACCTTATCACCC 58.903 50.000 0.00 0.00 0.00 4.61
2228 7466 2.725227 TCCCCAAAAACCTTATCACCCT 59.275 45.455 0.00 0.00 0.00 4.34
2229 7467 3.143168 TCCCCAAAAACCTTATCACCCTT 59.857 43.478 0.00 0.00 0.00 3.95
2230 7468 3.513912 CCCCAAAAACCTTATCACCCTTC 59.486 47.826 0.00 0.00 0.00 3.46
2231 7469 4.416516 CCCAAAAACCTTATCACCCTTCT 58.583 43.478 0.00 0.00 0.00 2.85
2232 7470 4.462834 CCCAAAAACCTTATCACCCTTCTC 59.537 45.833 0.00 0.00 0.00 2.87
2233 7471 4.462834 CCAAAAACCTTATCACCCTTCTCC 59.537 45.833 0.00 0.00 0.00 3.71
2234 7472 4.317530 AAAACCTTATCACCCTTCTCCC 57.682 45.455 0.00 0.00 0.00 4.30
2235 7473 1.497161 ACCTTATCACCCTTCTCCCG 58.503 55.000 0.00 0.00 0.00 5.14
2236 7474 1.273666 ACCTTATCACCCTTCTCCCGT 60.274 52.381 0.00 0.00 0.00 5.28
2237 7475 2.023695 ACCTTATCACCCTTCTCCCGTA 60.024 50.000 0.00 0.00 0.00 4.02
2238 7476 2.364647 CCTTATCACCCTTCTCCCGTAC 59.635 54.545 0.00 0.00 0.00 3.67
2239 7477 2.832643 TATCACCCTTCTCCCGTACA 57.167 50.000 0.00 0.00 0.00 2.90
2240 7478 1.486211 ATCACCCTTCTCCCGTACAG 58.514 55.000 0.00 0.00 0.00 2.74
2241 7479 0.613853 TCACCCTTCTCCCGTACAGG 60.614 60.000 0.00 0.00 40.63 4.00
2242 7480 0.613853 CACCCTTCTCCCGTACAGGA 60.614 60.000 0.00 0.00 45.00 3.86
2243 7481 0.614134 ACCCTTCTCCCGTACAGGAC 60.614 60.000 0.00 0.00 45.00 3.85
2244 7482 0.324460 CCCTTCTCCCGTACAGGACT 60.324 60.000 0.00 0.00 45.00 3.85
2245 7483 1.104630 CCTTCTCCCGTACAGGACTC 58.895 60.000 0.00 0.00 45.00 3.36
2246 7484 1.616187 CCTTCTCCCGTACAGGACTCA 60.616 57.143 0.00 0.00 45.00 3.41
2247 7485 2.168496 CTTCTCCCGTACAGGACTCAA 58.832 52.381 0.00 0.00 45.00 3.02
2248 7486 2.297698 TCTCCCGTACAGGACTCAAA 57.702 50.000 0.00 0.00 45.00 2.69
2249 7487 2.600790 TCTCCCGTACAGGACTCAAAA 58.399 47.619 0.00 0.00 45.00 2.44
2250 7488 2.561419 TCTCCCGTACAGGACTCAAAAG 59.439 50.000 0.00 0.00 45.00 2.27
2251 7489 1.621814 TCCCGTACAGGACTCAAAAGG 59.378 52.381 0.00 0.00 45.00 3.11
2252 7490 1.346722 CCCGTACAGGACTCAAAAGGT 59.653 52.381 5.46 0.00 45.00 3.50
2253 7491 2.413837 CCGTACAGGACTCAAAAGGTG 58.586 52.381 0.00 0.00 45.00 4.00
2254 7492 1.798813 CGTACAGGACTCAAAAGGTGC 59.201 52.381 0.00 0.00 0.00 5.01
2255 7493 1.798813 GTACAGGACTCAAAAGGTGCG 59.201 52.381 0.00 0.00 0.00 5.34
2256 7494 0.535102 ACAGGACTCAAAAGGTGCGG 60.535 55.000 0.00 0.00 0.00 5.69
2257 7495 0.535102 CAGGACTCAAAAGGTGCGGT 60.535 55.000 0.00 0.00 0.00 5.68
2258 7496 0.182775 AGGACTCAAAAGGTGCGGTT 59.817 50.000 0.00 0.00 0.00 4.44
2259 7497 0.591659 GGACTCAAAAGGTGCGGTTC 59.408 55.000 0.00 0.00 0.00 3.62
2260 7498 0.591659 GACTCAAAAGGTGCGGTTCC 59.408 55.000 0.00 0.00 0.00 3.62
2261 7499 1.164041 ACTCAAAAGGTGCGGTTCCG 61.164 55.000 6.90 6.90 0.00 4.30
2262 7500 1.852067 CTCAAAAGGTGCGGTTCCGG 61.852 60.000 13.16 0.00 0.00 5.14
2263 7501 1.894756 CAAAAGGTGCGGTTCCGGA 60.895 57.895 13.16 0.00 0.00 5.14
2264 7502 1.599797 AAAAGGTGCGGTTCCGGAG 60.600 57.895 3.34 0.00 0.00 4.63
2276 7514 3.155167 CCGGAGGCCTACTGTCCC 61.155 72.222 14.69 4.41 46.14 4.46
2277 7515 3.528370 CGGAGGCCTACTGTCCCG 61.528 72.222 14.69 13.90 0.00 5.14
2278 7516 2.043248 GGAGGCCTACTGTCCCGA 60.043 66.667 8.12 0.00 0.00 5.14
2279 7517 2.424733 GGAGGCCTACTGTCCCGAC 61.425 68.421 8.12 0.00 0.00 4.79
2280 7518 2.363925 AGGCCTACTGTCCCGACC 60.364 66.667 1.29 0.00 0.00 4.79
2281 7519 2.363925 GGCCTACTGTCCCGACCT 60.364 66.667 0.00 0.00 0.00 3.85
2282 7520 2.722201 GGCCTACTGTCCCGACCTG 61.722 68.421 0.00 0.00 0.00 4.00
2283 7521 2.893398 CCTACTGTCCCGACCTGC 59.107 66.667 0.00 0.00 0.00 4.85
2284 7522 2.490217 CTACTGTCCCGACCTGCG 59.510 66.667 0.00 0.00 40.47 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 100 1.581934 CTTTCACAAGAGTCACGGCA 58.418 50.000 0.00 0.00 30.57 5.69
208 222 0.581529 TTGTGCTTTCGCGAGAGTTG 59.418 50.000 25.34 9.49 43.69 3.16
209 223 0.582005 GTTGTGCTTTCGCGAGAGTT 59.418 50.000 25.34 0.00 43.69 3.01
250 266 0.309922 TTCTTTCGCGAGAGTCACGT 59.690 50.000 24.05 0.00 43.69 4.49
351 376 1.213094 CGCGAGAGTCACGGTTTTGT 61.213 55.000 11.95 0.00 0.00 2.83
400 429 0.958822 GTGCCTGGTGAAAACGGAAT 59.041 50.000 0.00 0.00 0.00 3.01
430 459 1.052287 CATGGTTTTGCTTTCGCGAC 58.948 50.000 9.15 0.00 39.65 5.19
475 504 0.737715 CGCTGTTTCCCTTCTCGAGG 60.738 60.000 13.56 0.00 45.86 4.63
480 509 1.227853 AACGCGCTGTTTCCCTTCT 60.228 52.632 5.73 0.00 37.59 2.85
586 632 6.249893 GCACTCTTTTTCGTCTTTTTAAACGT 59.750 34.615 0.00 0.00 39.78 3.99
598 644 3.768468 TTTTTCCGCACTCTTTTTCGT 57.232 38.095 0.00 0.00 0.00 3.85
740 794 0.034477 CTATTTGGACCGGGGCAACT 60.034 55.000 6.32 0.00 0.00 3.16
741 795 1.035385 CCTATTTGGACCGGGGCAAC 61.035 60.000 6.32 0.00 38.35 4.17
743 797 3.003230 CCTATTTGGACCGGGGCA 58.997 61.111 6.32 0.00 38.35 5.36
744 798 1.702022 TAGCCTATTTGGACCGGGGC 61.702 60.000 6.32 6.14 38.35 5.80
810 864 7.759886 CGTTCTGAAACTCTGAATAGGATTGTA 59.240 37.037 0.00 0.00 36.85 2.41
817 871 4.499183 AGGCGTTCTGAAACTCTGAATAG 58.501 43.478 0.00 0.48 36.85 1.73
877 931 2.105821 TGCTATAAATGGAACCTCGGGG 59.894 50.000 0.00 0.00 38.88 5.73
878 932 3.139077 GTGCTATAAATGGAACCTCGGG 58.861 50.000 0.00 0.00 0.00 5.14
891 959 0.664224 TGACGCGATCGGTGCTATAA 59.336 50.000 15.93 0.00 40.69 0.98
894 962 2.101575 GTGACGCGATCGGTGCTA 59.898 61.111 15.93 0.00 40.69 3.49
948 2480 2.025155 GCAAGACGGATCTAGGTCTCA 58.975 52.381 2.34 0.00 42.42 3.27
1045 2663 2.671070 CTCCACCCGCACCTTCAT 59.329 61.111 0.00 0.00 0.00 2.57
1214 5588 0.320374 GGTCACCGTCTTCACCATGA 59.680 55.000 0.00 0.00 0.00 3.07
1239 5613 0.174845 TCGGCGAGGAATCAAACGAT 59.825 50.000 4.99 0.00 0.00 3.73
1240 5614 0.457853 CTCGGCGAGGAATCAAACGA 60.458 55.000 28.52 0.00 0.00 3.85
1260 5634 1.043673 ACCAGCCGAGGATAGGACAC 61.044 60.000 0.00 0.00 29.15 3.67
1356 5731 7.583625 TCTCTAGAGTCCATCAATTACTACCA 58.416 38.462 19.21 0.00 0.00 3.25
1542 6187 9.996554 TCTGTATAAGTTGATAATACATGGTGG 57.003 33.333 0.00 0.00 35.98 4.61
1593 6238 3.704061 AGATTGGGAAGCTCTGTCTACTC 59.296 47.826 0.00 0.00 0.00 2.59
1615 6841 9.653287 CCTACTCAATCTTACAACATCAAGTTA 57.347 33.333 0.00 0.00 38.74 2.24
1658 6884 7.305474 CCTTCAATGTGTTTTCTGTATGGTAC 58.695 38.462 0.00 0.00 0.00 3.34
1747 6983 6.293004 TGAAAATGAACACAGGAGGTTTTT 57.707 33.333 0.00 0.00 0.00 1.94
1768 7004 3.055458 TCTTTGGACTGATTACGGCATGA 60.055 43.478 0.00 0.00 0.00 3.07
1773 7009 4.091509 CGTTCTTCTTTGGACTGATTACGG 59.908 45.833 0.00 0.00 0.00 4.02
1797 7033 3.584406 CCCACAATAGCTGGAGATATGGA 59.416 47.826 0.00 0.00 0.00 3.41
1828 7066 1.538687 GCAGGCAAATGCAGAAGGGT 61.539 55.000 7.80 0.00 45.77 4.34
1830 7068 4.904466 GCAGGCAAATGCAGAAGG 57.096 55.556 7.80 0.00 45.77 3.46
1858 7096 9.299963 CATTCGGTAAATTGCTCATATTTTCAA 57.700 29.630 0.00 0.00 0.00 2.69
1859 7097 8.681806 TCATTCGGTAAATTGCTCATATTTTCA 58.318 29.630 0.00 0.00 0.00 2.69
1860 7098 9.683069 ATCATTCGGTAAATTGCTCATATTTTC 57.317 29.630 0.00 0.00 0.00 2.29
1891 7129 9.309516 CCGTGCTTTATCTAGTATTTCTGTTAA 57.690 33.333 0.00 0.00 0.00 2.01
1892 7130 8.472413 ACCGTGCTTTATCTAGTATTTCTGTTA 58.528 33.333 0.00 0.00 0.00 2.41
1893 7131 7.328737 ACCGTGCTTTATCTAGTATTTCTGTT 58.671 34.615 0.00 0.00 0.00 3.16
1894 7132 6.875076 ACCGTGCTTTATCTAGTATTTCTGT 58.125 36.000 0.00 0.00 0.00 3.41
1895 7133 7.772332 AACCGTGCTTTATCTAGTATTTCTG 57.228 36.000 0.00 0.00 0.00 3.02
1896 7134 8.693625 ACTAACCGTGCTTTATCTAGTATTTCT 58.306 33.333 0.00 0.00 0.00 2.52
1897 7135 8.868635 ACTAACCGTGCTTTATCTAGTATTTC 57.131 34.615 0.00 0.00 0.00 2.17
1901 7139 8.725148 GCTATACTAACCGTGCTTTATCTAGTA 58.275 37.037 0.00 0.00 0.00 1.82
1902 7140 7.230108 TGCTATACTAACCGTGCTTTATCTAGT 59.770 37.037 0.00 0.00 0.00 2.57
1903 7141 7.591165 TGCTATACTAACCGTGCTTTATCTAG 58.409 38.462 0.00 0.00 0.00 2.43
1904 7142 7.230108 ACTGCTATACTAACCGTGCTTTATCTA 59.770 37.037 0.00 0.00 0.00 1.98
1905 7143 6.040616 ACTGCTATACTAACCGTGCTTTATCT 59.959 38.462 0.00 0.00 0.00 1.98
1906 7144 6.144080 CACTGCTATACTAACCGTGCTTTATC 59.856 42.308 0.00 0.00 0.00 1.75
1907 7145 5.983720 CACTGCTATACTAACCGTGCTTTAT 59.016 40.000 0.00 0.00 0.00 1.40
1908 7146 5.125900 TCACTGCTATACTAACCGTGCTTTA 59.874 40.000 0.00 0.00 0.00 1.85
1909 7147 4.081862 TCACTGCTATACTAACCGTGCTTT 60.082 41.667 0.00 0.00 0.00 3.51
1910 7148 3.446161 TCACTGCTATACTAACCGTGCTT 59.554 43.478 0.00 0.00 0.00 3.91
1911 7149 3.021695 TCACTGCTATACTAACCGTGCT 58.978 45.455 0.00 0.00 0.00 4.40
1912 7150 3.431922 TCACTGCTATACTAACCGTGC 57.568 47.619 0.00 0.00 0.00 5.34
1913 7151 7.490079 TGTTTTATCACTGCTATACTAACCGTG 59.510 37.037 0.00 0.00 0.00 4.94
1914 7152 7.549839 TGTTTTATCACTGCTATACTAACCGT 58.450 34.615 0.00 0.00 0.00 4.83
1915 7153 7.997107 TGTTTTATCACTGCTATACTAACCG 57.003 36.000 0.00 0.00 0.00 4.44
1921 7159 9.173939 GCATGATTTGTTTTATCACTGCTATAC 57.826 33.333 0.00 0.00 35.74 1.47
1922 7160 8.069574 CGCATGATTTGTTTTATCACTGCTATA 58.930 33.333 0.00 0.00 36.06 1.31
1923 7161 6.914215 CGCATGATTTGTTTTATCACTGCTAT 59.086 34.615 0.00 0.00 36.06 2.97
1924 7162 6.093357 TCGCATGATTTGTTTTATCACTGCTA 59.907 34.615 0.00 0.00 36.06 3.49
1925 7163 5.097529 CGCATGATTTGTTTTATCACTGCT 58.902 37.500 0.00 0.00 36.06 4.24
1926 7164 5.094812 TCGCATGATTTGTTTTATCACTGC 58.905 37.500 0.00 0.00 35.03 4.40
1927 7165 7.745022 AATCGCATGATTTGTTTTATCACTG 57.255 32.000 0.00 0.00 42.14 3.66
1940 7178 5.885230 TCTCTTTGTCAAATCGCATGATT 57.115 34.783 0.00 0.00 46.75 2.57
1941 7179 5.163683 CCTTCTCTTTGTCAAATCGCATGAT 60.164 40.000 0.00 0.00 35.98 2.45
1942 7180 4.154737 CCTTCTCTTTGTCAAATCGCATGA 59.845 41.667 0.00 0.00 0.00 3.07
1943 7181 4.083110 ACCTTCTCTTTGTCAAATCGCATG 60.083 41.667 0.00 0.00 0.00 4.06
1944 7182 4.074970 ACCTTCTCTTTGTCAAATCGCAT 58.925 39.130 0.00 0.00 0.00 4.73
1945 7183 3.476552 ACCTTCTCTTTGTCAAATCGCA 58.523 40.909 0.00 0.00 0.00 5.10
1946 7184 5.607119 TTACCTTCTCTTTGTCAAATCGC 57.393 39.130 0.00 0.00 0.00 4.58
1947 7185 6.954944 TGTTTACCTTCTCTTTGTCAAATCG 58.045 36.000 0.00 0.00 0.00 3.34
1948 7186 8.188139 TGTTGTTTACCTTCTCTTTGTCAAATC 58.812 33.333 0.00 0.00 0.00 2.17
1949 7187 8.062065 TGTTGTTTACCTTCTCTTTGTCAAAT 57.938 30.769 0.00 0.00 0.00 2.32
1950 7188 7.455641 TGTTGTTTACCTTCTCTTTGTCAAA 57.544 32.000 0.00 0.00 0.00 2.69
1951 7189 7.556275 AGATGTTGTTTACCTTCTCTTTGTCAA 59.444 33.333 0.00 0.00 0.00 3.18
1952 7190 7.012327 CAGATGTTGTTTACCTTCTCTTTGTCA 59.988 37.037 0.00 0.00 0.00 3.58
1953 7191 7.355778 CAGATGTTGTTTACCTTCTCTTTGTC 58.644 38.462 0.00 0.00 0.00 3.18
1954 7192 6.238759 GCAGATGTTGTTTACCTTCTCTTTGT 60.239 38.462 0.00 0.00 0.00 2.83
1955 7193 6.145535 GCAGATGTTGTTTACCTTCTCTTTG 58.854 40.000 0.00 0.00 0.00 2.77
1956 7194 5.827797 TGCAGATGTTGTTTACCTTCTCTTT 59.172 36.000 0.00 0.00 0.00 2.52
1957 7195 5.376625 TGCAGATGTTGTTTACCTTCTCTT 58.623 37.500 0.00 0.00 0.00 2.85
1958 7196 4.973168 TGCAGATGTTGTTTACCTTCTCT 58.027 39.130 0.00 0.00 0.00 3.10
1959 7197 5.886960 ATGCAGATGTTGTTTACCTTCTC 57.113 39.130 0.00 0.00 0.00 2.87
1960 7198 9.060347 CATATATGCAGATGTTGTTTACCTTCT 57.940 33.333 3.54 0.00 0.00 2.85
1961 7199 9.056005 TCATATATGCAGATGTTGTTTACCTTC 57.944 33.333 7.92 0.00 0.00 3.46
1962 7200 8.978874 TCATATATGCAGATGTTGTTTACCTT 57.021 30.769 7.92 0.00 0.00 3.50
1963 7201 8.840321 GTTCATATATGCAGATGTTGTTTACCT 58.160 33.333 7.92 0.00 0.00 3.08
1964 7202 8.840321 AGTTCATATATGCAGATGTTGTTTACC 58.160 33.333 7.92 0.00 0.00 2.85
1967 7205 9.836864 TCTAGTTCATATATGCAGATGTTGTTT 57.163 29.630 7.92 0.00 0.00 2.83
1968 7206 9.836864 TTCTAGTTCATATATGCAGATGTTGTT 57.163 29.630 7.92 0.00 0.00 2.83
1969 7207 9.265901 GTTCTAGTTCATATATGCAGATGTTGT 57.734 33.333 7.92 0.00 0.00 3.32
1970 7208 8.715998 GGTTCTAGTTCATATATGCAGATGTTG 58.284 37.037 7.92 2.00 0.00 3.33
1971 7209 7.600375 CGGTTCTAGTTCATATATGCAGATGTT 59.400 37.037 7.92 0.00 0.00 2.71
1972 7210 7.039714 TCGGTTCTAGTTCATATATGCAGATGT 60.040 37.037 7.92 0.00 0.00 3.06
1973 7211 7.315890 TCGGTTCTAGTTCATATATGCAGATG 58.684 38.462 7.92 1.85 0.00 2.90
1974 7212 7.468141 TCGGTTCTAGTTCATATATGCAGAT 57.532 36.000 7.92 0.00 0.00 2.90
1975 7213 6.894339 TCGGTTCTAGTTCATATATGCAGA 57.106 37.500 7.92 5.23 0.00 4.26
1976 7214 6.923508 TGTTCGGTTCTAGTTCATATATGCAG 59.076 38.462 7.92 3.10 0.00 4.41
1977 7215 6.700081 GTGTTCGGTTCTAGTTCATATATGCA 59.300 38.462 7.92 0.00 0.00 3.96
1978 7216 6.700081 TGTGTTCGGTTCTAGTTCATATATGC 59.300 38.462 7.92 0.00 0.00 3.14
1979 7217 8.818141 ATGTGTTCGGTTCTAGTTCATATATG 57.182 34.615 6.36 6.36 0.00 1.78
1980 7218 8.861086 AGATGTGTTCGGTTCTAGTTCATATAT 58.139 33.333 0.00 0.00 0.00 0.86
1981 7219 8.234136 AGATGTGTTCGGTTCTAGTTCATATA 57.766 34.615 0.00 0.00 0.00 0.86
1982 7220 7.113658 AGATGTGTTCGGTTCTAGTTCATAT 57.886 36.000 0.00 0.00 0.00 1.78
1983 7221 6.525578 AGATGTGTTCGGTTCTAGTTCATA 57.474 37.500 0.00 0.00 0.00 2.15
1984 7222 5.407407 AGATGTGTTCGGTTCTAGTTCAT 57.593 39.130 0.00 0.00 0.00 2.57
1985 7223 4.866508 AGATGTGTTCGGTTCTAGTTCA 57.133 40.909 0.00 0.00 0.00 3.18
1986 7224 6.192234 TCTAGATGTGTTCGGTTCTAGTTC 57.808 41.667 0.00 0.00 39.03 3.01
1987 7225 6.015688 TGTTCTAGATGTGTTCGGTTCTAGTT 60.016 38.462 0.00 0.00 39.03 2.24
1988 7226 5.475909 TGTTCTAGATGTGTTCGGTTCTAGT 59.524 40.000 0.00 0.00 39.03 2.57
1989 7227 5.950883 TGTTCTAGATGTGTTCGGTTCTAG 58.049 41.667 0.00 0.00 39.23 2.43
1990 7228 5.708697 TCTGTTCTAGATGTGTTCGGTTCTA 59.291 40.000 0.00 0.00 0.00 2.10
1991 7229 4.523173 TCTGTTCTAGATGTGTTCGGTTCT 59.477 41.667 0.00 0.00 0.00 3.01
1992 7230 4.621886 GTCTGTTCTAGATGTGTTCGGTTC 59.378 45.833 0.00 0.00 37.83 3.62
1993 7231 4.038763 TGTCTGTTCTAGATGTGTTCGGTT 59.961 41.667 0.00 0.00 37.83 4.44
1994 7232 3.572682 TGTCTGTTCTAGATGTGTTCGGT 59.427 43.478 0.00 0.00 37.83 4.69
1995 7233 3.921021 GTGTCTGTTCTAGATGTGTTCGG 59.079 47.826 0.00 0.00 37.83 4.30
1996 7234 4.799678 AGTGTCTGTTCTAGATGTGTTCG 58.200 43.478 0.00 0.00 37.83 3.95
1997 7235 7.147143 TCTAGTGTCTGTTCTAGATGTGTTC 57.853 40.000 0.00 0.00 38.05 3.18
1998 7236 6.349777 GCTCTAGTGTCTGTTCTAGATGTGTT 60.350 42.308 0.00 0.00 40.82 3.32
1999 7237 5.124776 GCTCTAGTGTCTGTTCTAGATGTGT 59.875 44.000 0.00 0.00 40.82 3.72
2000 7238 5.124617 TGCTCTAGTGTCTGTTCTAGATGTG 59.875 44.000 0.00 0.00 40.82 3.21
2001 7239 5.257262 TGCTCTAGTGTCTGTTCTAGATGT 58.743 41.667 0.00 0.00 40.82 3.06
2002 7240 5.826601 TGCTCTAGTGTCTGTTCTAGATG 57.173 43.478 0.00 0.00 40.82 2.90
2003 7241 6.184068 TCTTGCTCTAGTGTCTGTTCTAGAT 58.816 40.000 0.00 0.00 40.82 1.98
2004 7242 5.561679 TCTTGCTCTAGTGTCTGTTCTAGA 58.438 41.667 0.00 0.00 39.84 2.43
2005 7243 5.888691 TCTTGCTCTAGTGTCTGTTCTAG 57.111 43.478 0.00 0.00 36.10 2.43
2006 7244 5.770663 ACTTCTTGCTCTAGTGTCTGTTCTA 59.229 40.000 0.00 0.00 0.00 2.10
2007 7245 4.586841 ACTTCTTGCTCTAGTGTCTGTTCT 59.413 41.667 0.00 0.00 0.00 3.01
2008 7246 4.877282 ACTTCTTGCTCTAGTGTCTGTTC 58.123 43.478 0.00 0.00 0.00 3.18
2009 7247 4.946478 ACTTCTTGCTCTAGTGTCTGTT 57.054 40.909 0.00 0.00 0.00 3.16
2010 7248 4.100189 ACAACTTCTTGCTCTAGTGTCTGT 59.900 41.667 0.00 0.00 0.00 3.41
2011 7249 4.447054 CACAACTTCTTGCTCTAGTGTCTG 59.553 45.833 0.00 0.00 0.00 3.51
2012 7250 4.342378 TCACAACTTCTTGCTCTAGTGTCT 59.658 41.667 0.00 0.00 0.00 3.41
2013 7251 4.446051 GTCACAACTTCTTGCTCTAGTGTC 59.554 45.833 0.00 0.00 0.00 3.67
2014 7252 4.141937 TGTCACAACTTCTTGCTCTAGTGT 60.142 41.667 0.00 0.00 0.00 3.55
2015 7253 4.371786 TGTCACAACTTCTTGCTCTAGTG 58.628 43.478 0.00 0.00 0.00 2.74
2016 7254 4.342378 TCTGTCACAACTTCTTGCTCTAGT 59.658 41.667 0.00 0.00 0.00 2.57
2017 7255 4.876125 TCTGTCACAACTTCTTGCTCTAG 58.124 43.478 0.00 0.00 0.00 2.43
2018 7256 4.937201 TCTGTCACAACTTCTTGCTCTA 57.063 40.909 0.00 0.00 0.00 2.43
2019 7257 3.827008 TCTGTCACAACTTCTTGCTCT 57.173 42.857 0.00 0.00 0.00 4.09
2020 7258 3.002759 GGTTCTGTCACAACTTCTTGCTC 59.997 47.826 0.00 0.00 0.00 4.26
2021 7259 2.945668 GGTTCTGTCACAACTTCTTGCT 59.054 45.455 0.00 0.00 0.00 3.91
2022 7260 2.945668 AGGTTCTGTCACAACTTCTTGC 59.054 45.455 0.00 0.00 0.00 4.01
2023 7261 4.446371 AGAGGTTCTGTCACAACTTCTTG 58.554 43.478 0.56 0.00 36.97 3.02
2024 7262 4.762289 AGAGGTTCTGTCACAACTTCTT 57.238 40.909 0.56 0.00 36.97 2.52
2025 7263 5.871396 TTAGAGGTTCTGTCACAACTTCT 57.129 39.130 9.88 9.88 41.58 2.85
2026 7264 6.814146 CCTATTAGAGGTTCTGTCACAACTTC 59.186 42.308 0.00 0.00 40.98 3.01
2027 7265 6.497259 TCCTATTAGAGGTTCTGTCACAACTT 59.503 38.462 0.00 0.00 46.76 2.66
2028 7266 6.017192 TCCTATTAGAGGTTCTGTCACAACT 58.983 40.000 0.00 0.00 46.76 3.16
2029 7267 6.282199 TCCTATTAGAGGTTCTGTCACAAC 57.718 41.667 0.00 0.00 46.76 3.32
2030 7268 6.724441 TCTTCCTATTAGAGGTTCTGTCACAA 59.276 38.462 0.00 0.00 46.76 3.33
2031 7269 6.253758 TCTTCCTATTAGAGGTTCTGTCACA 58.746 40.000 0.00 0.00 46.76 3.58
2032 7270 6.378848 ACTCTTCCTATTAGAGGTTCTGTCAC 59.621 42.308 0.00 0.00 46.76 3.67
2033 7271 6.494952 ACTCTTCCTATTAGAGGTTCTGTCA 58.505 40.000 0.00 0.00 46.76 3.58
2034 7272 8.573035 CATACTCTTCCTATTAGAGGTTCTGTC 58.427 40.741 0.00 0.00 46.76 3.51
2035 7273 7.507616 CCATACTCTTCCTATTAGAGGTTCTGT 59.492 40.741 0.00 0.00 46.76 3.41
2036 7274 7.039363 CCCATACTCTTCCTATTAGAGGTTCTG 60.039 44.444 0.00 0.00 46.76 3.02
2037 7275 7.013834 CCCATACTCTTCCTATTAGAGGTTCT 58.986 42.308 0.00 0.00 46.76 3.01
2038 7276 7.011382 TCCCATACTCTTCCTATTAGAGGTTC 58.989 42.308 0.00 0.00 46.76 3.62
2039 7277 6.935036 TCCCATACTCTTCCTATTAGAGGTT 58.065 40.000 0.00 0.00 46.76 3.50
2040 7278 6.547396 TCCCATACTCTTCCTATTAGAGGT 57.453 41.667 0.00 0.00 46.76 3.85
2042 7280 6.490721 ACGTTCCCATACTCTTCCTATTAGAG 59.509 42.308 0.00 0.00 43.78 2.43
2043 7281 6.371278 ACGTTCCCATACTCTTCCTATTAGA 58.629 40.000 0.00 0.00 0.00 2.10
2044 7282 6.651975 ACGTTCCCATACTCTTCCTATTAG 57.348 41.667 0.00 0.00 0.00 1.73
2045 7283 6.205464 CGTACGTTCCCATACTCTTCCTATTA 59.795 42.308 7.22 0.00 0.00 0.98
2046 7284 5.009410 CGTACGTTCCCATACTCTTCCTATT 59.991 44.000 7.22 0.00 0.00 1.73
2047 7285 4.518211 CGTACGTTCCCATACTCTTCCTAT 59.482 45.833 7.22 0.00 0.00 2.57
2048 7286 3.879295 CGTACGTTCCCATACTCTTCCTA 59.121 47.826 7.22 0.00 0.00 2.94
2049 7287 2.686915 CGTACGTTCCCATACTCTTCCT 59.313 50.000 7.22 0.00 0.00 3.36
2050 7288 2.223665 CCGTACGTTCCCATACTCTTCC 60.224 54.545 15.21 0.00 0.00 3.46
2051 7289 2.684881 TCCGTACGTTCCCATACTCTTC 59.315 50.000 15.21 0.00 0.00 2.87
2052 7290 2.726821 TCCGTACGTTCCCATACTCTT 58.273 47.619 15.21 0.00 0.00 2.85
2053 7291 2.425143 TCCGTACGTTCCCATACTCT 57.575 50.000 15.21 0.00 0.00 3.24
2054 7292 3.378339 CATTCCGTACGTTCCCATACTC 58.622 50.000 15.21 0.00 0.00 2.59
2055 7293 2.101917 CCATTCCGTACGTTCCCATACT 59.898 50.000 15.21 0.00 0.00 2.12
2056 7294 2.476821 CCATTCCGTACGTTCCCATAC 58.523 52.381 15.21 0.00 0.00 2.39
2057 7295 1.413445 CCCATTCCGTACGTTCCCATA 59.587 52.381 15.21 0.00 0.00 2.74
2058 7296 0.179468 CCCATTCCGTACGTTCCCAT 59.821 55.000 15.21 0.00 0.00 4.00
2059 7297 0.903924 TCCCATTCCGTACGTTCCCA 60.904 55.000 15.21 0.00 0.00 4.37
2060 7298 0.179092 CTCCCATTCCGTACGTTCCC 60.179 60.000 15.21 0.00 0.00 3.97
2061 7299 0.808847 GCTCCCATTCCGTACGTTCC 60.809 60.000 15.21 0.00 0.00 3.62
2062 7300 0.108520 TGCTCCCATTCCGTACGTTC 60.109 55.000 15.21 0.00 0.00 3.95
2063 7301 0.108329 CTGCTCCCATTCCGTACGTT 60.108 55.000 15.21 0.00 0.00 3.99
2064 7302 0.968901 TCTGCTCCCATTCCGTACGT 60.969 55.000 15.21 0.00 0.00 3.57
2065 7303 0.389391 ATCTGCTCCCATTCCGTACG 59.611 55.000 8.69 8.69 0.00 3.67
2066 7304 1.871080 CATCTGCTCCCATTCCGTAC 58.129 55.000 0.00 0.00 0.00 3.67
2067 7305 0.106708 GCATCTGCTCCCATTCCGTA 59.893 55.000 0.00 0.00 38.21 4.02
2068 7306 1.153086 GCATCTGCTCCCATTCCGT 60.153 57.895 0.00 0.00 38.21 4.69
2069 7307 1.153107 TGCATCTGCTCCCATTCCG 60.153 57.895 3.53 0.00 42.66 4.30
2070 7308 1.105759 GGTGCATCTGCTCCCATTCC 61.106 60.000 11.34 0.00 46.01 3.01
2071 7309 2.412605 GGTGCATCTGCTCCCATTC 58.587 57.895 11.34 0.00 46.01 2.67
2072 7310 4.672251 GGTGCATCTGCTCCCATT 57.328 55.556 11.34 0.00 46.01 3.16
2077 7315 1.404391 CCAAGATTGGTGCATCTGCTC 59.596 52.381 0.00 0.00 43.43 4.26
2078 7316 1.471119 CCAAGATTGGTGCATCTGCT 58.529 50.000 0.00 0.00 43.43 4.24
2089 7327 0.676782 GGACACCGACCCCAAGATTG 60.677 60.000 0.00 0.00 0.00 2.67
2090 7328 0.840722 AGGACACCGACCCCAAGATT 60.841 55.000 0.00 0.00 0.00 2.40
2091 7329 1.229529 AGGACACCGACCCCAAGAT 60.230 57.895 0.00 0.00 0.00 2.40
2092 7330 1.911766 GAGGACACCGACCCCAAGA 60.912 63.158 0.00 0.00 0.00 3.02
2093 7331 2.663196 GAGGACACCGACCCCAAG 59.337 66.667 0.00 0.00 0.00 3.61
2094 7332 3.307906 CGAGGACACCGACCCCAA 61.308 66.667 0.00 0.00 0.00 4.12
2097 7335 2.753043 TAGCGAGGACACCGACCC 60.753 66.667 0.00 0.00 0.00 4.46
2098 7336 2.799371 CTAGCGAGGACACCGACC 59.201 66.667 0.00 0.00 0.00 4.79
2099 7337 2.102553 GCTAGCGAGGACACCGAC 59.897 66.667 0.00 0.00 0.00 4.79
2100 7338 3.138798 GGCTAGCGAGGACACCGA 61.139 66.667 9.00 0.00 0.00 4.69
2101 7339 2.786495 ATGGCTAGCGAGGACACCG 61.786 63.158 9.00 0.00 0.00 4.94
2102 7340 1.227380 CATGGCTAGCGAGGACACC 60.227 63.158 5.36 0.00 0.00 4.16
2103 7341 0.528684 GACATGGCTAGCGAGGACAC 60.529 60.000 18.47 5.49 0.00 3.67
2104 7342 1.816537 GACATGGCTAGCGAGGACA 59.183 57.895 18.47 5.72 0.00 4.02
2105 7343 1.299468 CGACATGGCTAGCGAGGAC 60.299 63.158 18.47 10.91 0.00 3.85
2106 7344 1.725557 GACGACATGGCTAGCGAGGA 61.726 60.000 18.47 0.00 0.00 3.71
2107 7345 1.299468 GACGACATGGCTAGCGAGG 60.299 63.158 9.98 9.98 0.00 4.63
2108 7346 1.655654 CGACGACATGGCTAGCGAG 60.656 63.158 9.00 3.31 0.00 5.03
2109 7347 2.048312 CTCGACGACATGGCTAGCGA 62.048 60.000 9.00 4.95 0.00 4.93
2110 7348 1.655654 CTCGACGACATGGCTAGCG 60.656 63.158 9.00 0.00 0.00 4.26
2111 7349 1.299468 CCTCGACGACATGGCTAGC 60.299 63.158 6.04 6.04 0.00 3.42
2112 7350 0.309302 CTCCTCGACGACATGGCTAG 59.691 60.000 0.00 0.00 0.00 3.42
2113 7351 0.107361 TCTCCTCGACGACATGGCTA 60.107 55.000 0.00 0.00 0.00 3.93
2114 7352 0.753479 ATCTCCTCGACGACATGGCT 60.753 55.000 0.00 0.00 0.00 4.75
2115 7353 0.103208 AATCTCCTCGACGACATGGC 59.897 55.000 0.00 0.00 0.00 4.40
2116 7354 1.135139 ACAATCTCCTCGACGACATGG 59.865 52.381 0.00 0.00 0.00 3.66
2117 7355 2.455032 GACAATCTCCTCGACGACATG 58.545 52.381 0.00 0.00 0.00 3.21
2118 7356 1.064208 CGACAATCTCCTCGACGACAT 59.936 52.381 0.00 0.00 31.24 3.06
2119 7357 0.446616 CGACAATCTCCTCGACGACA 59.553 55.000 0.00 0.00 31.24 4.35
2120 7358 0.725686 TCGACAATCTCCTCGACGAC 59.274 55.000 0.00 0.00 34.04 4.34
2121 7359 0.725686 GTCGACAATCTCCTCGACGA 59.274 55.000 11.55 0.00 46.60 4.20
2122 7360 3.221834 GTCGACAATCTCCTCGACG 57.778 57.895 11.55 0.00 46.60 5.12
2124 7362 1.135774 CAACGTCGACAATCTCCTCGA 60.136 52.381 17.16 0.00 36.58 4.04
2125 7363 1.260206 CAACGTCGACAATCTCCTCG 58.740 55.000 17.16 0.08 0.00 4.63
2126 7364 1.630148 CCAACGTCGACAATCTCCTC 58.370 55.000 17.16 0.00 0.00 3.71
2127 7365 0.246635 CCCAACGTCGACAATCTCCT 59.753 55.000 17.16 0.00 0.00 3.69
2128 7366 0.739813 CCCCAACGTCGACAATCTCC 60.740 60.000 17.16 0.00 0.00 3.71
2129 7367 0.245539 TCCCCAACGTCGACAATCTC 59.754 55.000 17.16 0.00 0.00 2.75
2130 7368 0.682852 TTCCCCAACGTCGACAATCT 59.317 50.000 17.16 0.00 0.00 2.40
2131 7369 1.076332 CTTCCCCAACGTCGACAATC 58.924 55.000 17.16 0.00 0.00 2.67
2132 7370 0.395312 ACTTCCCCAACGTCGACAAT 59.605 50.000 17.16 0.00 0.00 2.71
2133 7371 1.000060 CTACTTCCCCAACGTCGACAA 60.000 52.381 17.16 0.00 0.00 3.18
2134 7372 0.599558 CTACTTCCCCAACGTCGACA 59.400 55.000 17.16 0.00 0.00 4.35
2135 7373 0.600057 ACTACTTCCCCAACGTCGAC 59.400 55.000 5.18 5.18 0.00 4.20
2136 7374 0.883833 GACTACTTCCCCAACGTCGA 59.116 55.000 0.00 0.00 0.00 4.20
2137 7375 0.455633 CGACTACTTCCCCAACGTCG 60.456 60.000 0.00 0.00 38.31 5.12
2138 7376 0.600057 ACGACTACTTCCCCAACGTC 59.400 55.000 0.00 0.00 0.00 4.34
2139 7377 0.600057 GACGACTACTTCCCCAACGT 59.400 55.000 0.00 0.00 35.31 3.99
2140 7378 0.455633 CGACGACTACTTCCCCAACG 60.456 60.000 0.00 0.00 0.00 4.10
2141 7379 0.108945 CCGACGACTACTTCCCCAAC 60.109 60.000 0.00 0.00 0.00 3.77
2142 7380 0.251297 TCCGACGACTACTTCCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
2143 7381 0.679002 CTCCGACGACTACTTCCCCA 60.679 60.000 0.00 0.00 0.00 4.96
2144 7382 0.679321 ACTCCGACGACTACTTCCCC 60.679 60.000 0.00 0.00 0.00 4.81
2145 7383 0.731994 GACTCCGACGACTACTTCCC 59.268 60.000 0.00 0.00 0.00 3.97
2146 7384 0.731994 GGACTCCGACGACTACTTCC 59.268 60.000 0.00 0.00 0.00 3.46
2171 7409 1.001597 ACTGACTTCTTCGTCACGGAC 60.002 52.381 0.00 0.00 38.89 4.79
2172 7410 1.315690 ACTGACTTCTTCGTCACGGA 58.684 50.000 0.00 0.00 38.89 4.69
2173 7411 2.225963 ACTACTGACTTCTTCGTCACGG 59.774 50.000 0.00 0.00 38.89 4.94
2174 7412 3.480894 GACTACTGACTTCTTCGTCACG 58.519 50.000 0.00 0.00 38.89 4.35
2175 7413 3.480894 CGACTACTGACTTCTTCGTCAC 58.519 50.000 0.00 0.00 38.89 3.67
2176 7414 2.095869 GCGACTACTGACTTCTTCGTCA 60.096 50.000 0.00 0.00 41.33 4.35
2177 7415 2.507866 GCGACTACTGACTTCTTCGTC 58.492 52.381 0.00 0.00 34.52 4.20
2178 7416 1.136029 CGCGACTACTGACTTCTTCGT 60.136 52.381 0.00 0.00 0.00 3.85
2179 7417 1.525596 CGCGACTACTGACTTCTTCG 58.474 55.000 0.00 0.00 0.00 3.79
2180 7418 1.135632 AGCGCGACTACTGACTTCTTC 60.136 52.381 12.10 0.00 0.00 2.87
2181 7419 0.882474 AGCGCGACTACTGACTTCTT 59.118 50.000 12.10 0.00 0.00 2.52
2182 7420 0.169230 CAGCGCGACTACTGACTTCT 59.831 55.000 12.10 0.00 35.90 2.85
2183 7421 0.168348 TCAGCGCGACTACTGACTTC 59.832 55.000 12.10 0.00 37.99 3.01
2184 7422 0.169230 CTCAGCGCGACTACTGACTT 59.831 55.000 12.10 0.00 37.99 3.01
2185 7423 1.797441 CTCAGCGCGACTACTGACT 59.203 57.895 12.10 0.00 37.99 3.41
2186 7424 1.870016 GCTCAGCGCGACTACTGAC 60.870 63.158 12.10 4.47 37.99 3.51
2187 7425 2.485582 GCTCAGCGCGACTACTGA 59.514 61.111 12.10 12.40 40.54 3.41
2199 7437 1.581447 GTTTTTGGGGAGCGCTCAG 59.419 57.895 36.27 0.00 0.00 3.35
2200 7438 1.901464 GGTTTTTGGGGAGCGCTCA 60.901 57.895 36.27 16.57 0.00 4.26
2201 7439 1.179174 AAGGTTTTTGGGGAGCGCTC 61.179 55.000 29.38 29.38 0.00 5.03
2202 7440 0.111639 TAAGGTTTTTGGGGAGCGCT 59.888 50.000 11.27 11.27 0.00 5.92
2203 7441 1.134367 GATAAGGTTTTTGGGGAGCGC 59.866 52.381 0.00 0.00 0.00 5.92
2204 7442 2.163613 GTGATAAGGTTTTTGGGGAGCG 59.836 50.000 0.00 0.00 0.00 5.03
2205 7443 2.496070 GGTGATAAGGTTTTTGGGGAGC 59.504 50.000 0.00 0.00 0.00 4.70
2206 7444 3.096852 GGGTGATAAGGTTTTTGGGGAG 58.903 50.000 0.00 0.00 0.00 4.30
2207 7445 2.725227 AGGGTGATAAGGTTTTTGGGGA 59.275 45.455 0.00 0.00 0.00 4.81
2208 7446 3.184382 AGGGTGATAAGGTTTTTGGGG 57.816 47.619 0.00 0.00 0.00 4.96
2209 7447 4.416516 AGAAGGGTGATAAGGTTTTTGGG 58.583 43.478 0.00 0.00 0.00 4.12
2210 7448 4.462834 GGAGAAGGGTGATAAGGTTTTTGG 59.537 45.833 0.00 0.00 0.00 3.28
2211 7449 4.462834 GGGAGAAGGGTGATAAGGTTTTTG 59.537 45.833 0.00 0.00 0.00 2.44
2212 7450 4.673968 GGGAGAAGGGTGATAAGGTTTTT 58.326 43.478 0.00 0.00 0.00 1.94
2213 7451 3.308188 CGGGAGAAGGGTGATAAGGTTTT 60.308 47.826 0.00 0.00 0.00 2.43
2214 7452 2.238898 CGGGAGAAGGGTGATAAGGTTT 59.761 50.000 0.00 0.00 0.00 3.27
2215 7453 1.838077 CGGGAGAAGGGTGATAAGGTT 59.162 52.381 0.00 0.00 0.00 3.50
2216 7454 1.273666 ACGGGAGAAGGGTGATAAGGT 60.274 52.381 0.00 0.00 0.00 3.50
2217 7455 1.497161 ACGGGAGAAGGGTGATAAGG 58.503 55.000 0.00 0.00 0.00 2.69
2218 7456 3.028850 TGTACGGGAGAAGGGTGATAAG 58.971 50.000 0.00 0.00 0.00 1.73
2219 7457 3.028850 CTGTACGGGAGAAGGGTGATAA 58.971 50.000 0.00 0.00 0.00 1.75
2220 7458 2.662866 CTGTACGGGAGAAGGGTGATA 58.337 52.381 0.00 0.00 0.00 2.15
2221 7459 1.486211 CTGTACGGGAGAAGGGTGAT 58.514 55.000 0.00 0.00 0.00 3.06
2222 7460 0.613853 CCTGTACGGGAGAAGGGTGA 60.614 60.000 16.40 0.00 0.00 4.02
2223 7461 0.613853 TCCTGTACGGGAGAAGGGTG 60.614 60.000 20.03 0.00 32.16 4.61
2224 7462 0.614134 GTCCTGTACGGGAGAAGGGT 60.614 60.000 24.28 0.00 35.87 4.34
2225 7463 0.324460 AGTCCTGTACGGGAGAAGGG 60.324 60.000 24.28 0.00 35.87 3.95
2226 7464 1.104630 GAGTCCTGTACGGGAGAAGG 58.895 60.000 24.28 5.98 35.87 3.46
2227 7465 1.835494 TGAGTCCTGTACGGGAGAAG 58.165 55.000 24.28 0.00 35.87 2.85
2228 7466 2.297698 TTGAGTCCTGTACGGGAGAA 57.702 50.000 24.28 13.72 35.87 2.87
2229 7467 2.297698 TTTGAGTCCTGTACGGGAGA 57.702 50.000 24.28 8.24 35.87 3.71
2230 7468 2.353803 CCTTTTGAGTCCTGTACGGGAG 60.354 54.545 24.28 10.07 35.87 4.30
2231 7469 1.621814 CCTTTTGAGTCCTGTACGGGA 59.378 52.381 20.03 20.03 0.00 5.14
2232 7470 1.346722 ACCTTTTGAGTCCTGTACGGG 59.653 52.381 15.21 15.21 0.00 5.28
2233 7471 2.413837 CACCTTTTGAGTCCTGTACGG 58.586 52.381 0.00 0.00 0.00 4.02
2234 7472 1.798813 GCACCTTTTGAGTCCTGTACG 59.201 52.381 0.00 0.00 0.00 3.67
2235 7473 1.798813 CGCACCTTTTGAGTCCTGTAC 59.201 52.381 0.00 0.00 0.00 2.90
2236 7474 1.270625 CCGCACCTTTTGAGTCCTGTA 60.271 52.381 0.00 0.00 0.00 2.74
2237 7475 0.535102 CCGCACCTTTTGAGTCCTGT 60.535 55.000 0.00 0.00 0.00 4.00
2238 7476 0.535102 ACCGCACCTTTTGAGTCCTG 60.535 55.000 0.00 0.00 0.00 3.86
2239 7477 0.182775 AACCGCACCTTTTGAGTCCT 59.817 50.000 0.00 0.00 0.00 3.85
2240 7478 0.591659 GAACCGCACCTTTTGAGTCC 59.408 55.000 0.00 0.00 0.00 3.85
2241 7479 0.591659 GGAACCGCACCTTTTGAGTC 59.408 55.000 0.00 0.00 0.00 3.36
2242 7480 1.164041 CGGAACCGCACCTTTTGAGT 61.164 55.000 0.00 0.00 0.00 3.41
2243 7481 1.574428 CGGAACCGCACCTTTTGAG 59.426 57.895 0.00 0.00 0.00 3.02
2244 7482 1.894756 CCGGAACCGCACCTTTTGA 60.895 57.895 7.80 0.00 38.24 2.69
2245 7483 1.852067 CTCCGGAACCGCACCTTTTG 61.852 60.000 5.23 0.00 38.24 2.44
2246 7484 1.599797 CTCCGGAACCGCACCTTTT 60.600 57.895 5.23 0.00 38.24 2.27
2247 7485 2.032071 CTCCGGAACCGCACCTTT 59.968 61.111 5.23 0.00 38.24 3.11
2248 7486 4.016706 CCTCCGGAACCGCACCTT 62.017 66.667 5.23 0.00 38.24 3.50
2253 7491 4.525949 GTAGGCCTCCGGAACCGC 62.526 72.222 9.68 12.34 38.24 5.68
2254 7492 2.758737 AGTAGGCCTCCGGAACCG 60.759 66.667 9.68 6.25 39.44 4.44
2255 7493 1.957765 GACAGTAGGCCTCCGGAACC 61.958 65.000 9.68 14.18 0.00 3.62
2256 7494 1.516423 GACAGTAGGCCTCCGGAAC 59.484 63.158 9.68 0.00 0.00 3.62
2257 7495 1.684734 GGACAGTAGGCCTCCGGAA 60.685 63.158 9.68 0.00 0.00 4.30
2258 7496 2.043248 GGACAGTAGGCCTCCGGA 60.043 66.667 9.68 2.93 0.00 5.14
2259 7497 3.155167 GGGACAGTAGGCCTCCGG 61.155 72.222 9.68 0.00 0.00 5.14
2260 7498 3.528370 CGGGACAGTAGGCCTCCG 61.528 72.222 9.68 11.98 0.00 4.63
2261 7499 2.043248 TCGGGACAGTAGGCCTCC 60.043 66.667 9.68 3.29 0.00 4.30
2262 7500 2.424733 GGTCGGGACAGTAGGCCTC 61.425 68.421 9.68 0.21 0.00 4.70
2263 7501 2.363925 GGTCGGGACAGTAGGCCT 60.364 66.667 11.78 11.78 0.00 5.19
2264 7502 2.363925 AGGTCGGGACAGTAGGCC 60.364 66.667 0.00 0.00 0.00 5.19
2265 7503 2.893398 CAGGTCGGGACAGTAGGC 59.107 66.667 0.75 0.00 0.00 3.93
2266 7504 2.893398 GCAGGTCGGGACAGTAGG 59.107 66.667 0.75 0.00 0.00 3.18
2267 7505 2.490217 CGCAGGTCGGGACAGTAG 59.510 66.667 0.75 0.00 33.78 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.