Multiple sequence alignment - TraesCS2D01G383500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G383500 chr2D 100.000 5473 0 0 1 5473 488060502 488055030 0.000000e+00 10107.0
1 TraesCS2D01G383500 chr2D 80.621 676 93 25 1978 2629 486390956 486391617 6.370000e-134 488.0
2 TraesCS2D01G383500 chr2D 79.830 704 96 27 1978 2646 487593961 487593269 6.420000e-129 472.0
3 TraesCS2D01G383500 chr2D 79.173 701 95 23 1975 2646 487724727 487724049 6.510000e-119 438.0
4 TraesCS2D01G383500 chr2D 83.043 460 37 15 4240 4659 486392346 486392804 4.000000e-101 379.0
5 TraesCS2D01G383500 chr2D 86.319 307 39 3 3891 4196 486392037 486392341 1.140000e-86 331.0
6 TraesCS2D01G383500 chr2D 82.353 357 36 14 889 1219 486390297 486390652 8.970000e-73 285.0
7 TraesCS2D01G383500 chr2D 79.830 352 33 15 889 1220 487934904 487934571 7.140000e-54 222.0
8 TraesCS2D01G383500 chr2D 88.701 177 20 0 1665 1841 487934465 487934289 3.320000e-52 217.0
9 TraesCS2D01G383500 chr2D 84.951 206 23 5 1645 1846 487594209 487594008 9.300000e-48 202.0
10 TraesCS2D01G383500 chr2D 86.628 172 23 0 3351 3522 487723876 487723705 2.010000e-44 191.0
11 TraesCS2D01G383500 chr2D 82.857 175 27 2 3351 3522 487593096 487592922 2.640000e-33 154.0
12 TraesCS2D01G383500 chr2D 83.607 122 10 5 3137 3249 486391650 486391770 7.500000e-19 106.0
13 TraesCS2D01G383500 chr2D 87.912 91 7 1 3163 3249 487724004 487723914 2.700000e-18 104.0
14 TraesCS2D01G383500 chr2D 86.747 83 7 1 3171 3249 487593216 487593134 7.550000e-14 89.8
15 TraesCS2D01G383500 chr2A 94.884 1818 54 12 3686 5473 632593149 632591341 0.000000e+00 2806.0
16 TraesCS2D01G383500 chr2A 93.123 1425 77 16 2203 3618 632594783 632593371 0.000000e+00 2069.0
17 TraesCS2D01G383500 chr2A 94.925 670 28 4 1537 2205 632595605 632594941 0.000000e+00 1044.0
18 TraesCS2D01G383500 chr2A 85.955 890 61 26 697 1558 632596665 632595812 0.000000e+00 893.0
19 TraesCS2D01G383500 chr2A 80.746 831 79 36 3875 4659 631856869 631857664 1.710000e-159 573.0
20 TraesCS2D01G383500 chr2A 79.548 753 98 32 1926 2629 631855700 631856445 2.290000e-133 486.0
21 TraesCS2D01G383500 chr2A 78.921 797 105 36 3891 4659 46337033 46337794 2.960000e-132 483.0
22 TraesCS2D01G383500 chr2A 80.420 429 64 13 2232 2652 46336250 46336666 5.320000e-80 309.0
23 TraesCS2D01G383500 chr2A 85.083 181 22 4 3351 3527 46336801 46336980 4.360000e-41 180.0
24 TraesCS2D01G383500 chr2A 91.176 102 9 0 1121 1222 632589375 632589274 7.390000e-29 139.0
25 TraesCS2D01G383500 chr2A 93.421 76 3 1 3619 3692 632593262 632593187 1.610000e-20 111.0
26 TraesCS2D01G383500 chr2B 93.139 1268 57 13 3716 4974 572323012 572321766 0.000000e+00 1832.0
27 TraesCS2D01G383500 chr2B 91.205 830 33 15 1396 2205 572325510 572324701 0.000000e+00 1092.0
28 TraesCS2D01G383500 chr2B 84.434 1105 76 39 314 1355 572326680 572325609 0.000000e+00 1000.0
29 TraesCS2D01G383500 chr2B 91.761 704 39 11 2918 3618 572323842 572323155 0.000000e+00 961.0
30 TraesCS2D01G383500 chr2B 89.684 727 35 13 2203 2911 572324578 572323874 0.000000e+00 891.0
31 TraesCS2D01G383500 chr2B 81.618 680 92 19 1975 2627 572179537 572178864 2.900000e-147 532.0
32 TraesCS2D01G383500 chr2B 80.854 679 91 25 1978 2629 571346154 571346820 1.060000e-136 497.0
33 TraesCS2D01G383500 chr2B 84.292 452 37 16 4240 4659 571347586 571348035 1.420000e-110 411.0
34 TraesCS2D01G383500 chr2B 86.544 327 37 4 3875 4196 571347257 571347581 2.430000e-93 353.0
35 TraesCS2D01G383500 chr2B 78.893 488 58 18 4240 4685 572312380 572311896 6.940000e-74 289.0
36 TraesCS2D01G383500 chr2B 89.604 202 16 3 1647 1846 572314052 572313854 9.100000e-63 252.0
37 TraesCS2D01G383500 chr2B 87.805 205 19 4 1645 1846 572179784 572179583 9.170000e-58 235.0
38 TraesCS2D01G383500 chr2B 80.000 350 37 19 889 1219 571345487 571345822 1.530000e-55 228.0
39 TraesCS2D01G383500 chr2B 84.821 224 27 2 1006 1222 572180071 572179848 9.230000e-53 219.0
40 TraesCS2D01G383500 chr2B 85.876 177 20 3 3351 3523 571347048 571347223 3.370000e-42 183.0
41 TraesCS2D01G383500 chr2B 83.429 175 26 2 3351 3522 572178669 572178495 5.670000e-35 159.0
42 TraesCS2D01G383500 chr2B 81.818 121 14 3 3137 3249 572178827 572178707 1.620000e-15 95.3
43 TraesCS2D01G383500 chr2B 85.393 89 8 5 888 974 572314376 572314291 2.720000e-13 87.9
44 TraesCS2D01G383500 chr2B 88.889 63 7 0 4561 4623 548939676 548939614 1.630000e-10 78.7
45 TraesCS2D01G383500 chr2B 94.000 50 3 0 3619 3668 572323063 572323014 5.880000e-10 76.8
46 TraesCS2D01G383500 chr3D 78.822 798 106 34 3891 4659 16449401 16450164 3.830000e-131 479.0
47 TraesCS2D01G383500 chr3D 93.976 83 5 0 3351 3433 16449221 16449139 5.760000e-25 126.0
48 TraesCS2D01G383500 chr3D 100.000 31 0 0 3686 3716 142484638 142484608 2.130000e-04 58.4
49 TraesCS2D01G383500 chr7D 81.944 432 55 14 2232 2652 446551622 446551203 1.460000e-90 344.0
50 TraesCS2D01G383500 chr7D 86.645 307 35 4 3891 4196 446550836 446550535 8.780000e-88 335.0
51 TraesCS2D01G383500 chr7D 87.097 186 18 5 3351 3531 446551068 446550884 7.190000e-49 206.0
52 TraesCS2D01G383500 chr4B 85.032 314 34 9 3891 4196 16787481 16787789 1.910000e-79 307.0
53 TraesCS2D01G383500 chr4B 87.013 77 10 0 115 191 520387617 520387693 2.720000e-13 87.9
54 TraesCS2D01G383500 chr7A 80.465 215 26 7 1 199 497650441 497650655 3.420000e-32 150.0
55 TraesCS2D01G383500 chr7A 83.784 148 11 5 4241 4376 321636011 321635865 1.600000e-25 128.0
56 TraesCS2D01G383500 chr6B 78.049 246 26 10 1 230 140408870 140409103 4.450000e-26 130.0
57 TraesCS2D01G383500 chr6B 78.049 246 26 5 1 230 140430025 140430258 4.450000e-26 130.0
58 TraesCS2D01G383500 chr6B 77.642 246 27 10 1 230 140446627 140446860 2.070000e-24 124.0
59 TraesCS2D01G383500 chr6B 77.236 246 28 5 1 230 140419506 140419739 9.630000e-23 119.0
60 TraesCS2D01G383500 chr3B 82.237 152 17 1 79 230 650918580 650918721 7.440000e-24 122.0
61 TraesCS2D01G383500 chr5B 89.610 77 8 0 115 191 482293152 482293076 1.250000e-16 99.0
62 TraesCS2D01G383500 chr5B 86.250 80 11 0 110 189 532590898 532590819 2.720000e-13 87.9
63 TraesCS2D01G383500 chr3A 95.161 62 2 1 5281 5342 17824087 17824027 4.510000e-16 97.1
64 TraesCS2D01G383500 chr3A 80.000 125 18 6 5352 5473 509880326 509880206 9.770000e-13 86.1
65 TraesCS2D01G383500 chr7B 83.333 96 16 0 110 205 599416474 599416569 7.550000e-14 89.8
66 TraesCS2D01G383500 chr7B 85.526 76 11 0 115 190 642533532 642533457 4.540000e-11 80.5
67 TraesCS2D01G383500 chr6A 87.931 58 6 1 84 141 506421315 506421371 3.540000e-07 67.6
68 TraesCS2D01G383500 chr5A 89.796 49 5 0 36 84 454824297 454824345 4.580000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G383500 chr2D 488055030 488060502 5472 True 10107.000000 10107 100.000000 1 5473 1 chr2D.!!$R1 5472
1 TraesCS2D01G383500 chr2D 486390297 486392804 2507 False 317.800000 488 83.188600 889 4659 5 chr2D.!!$F1 3770
2 TraesCS2D01G383500 chr2D 487723705 487724727 1022 True 244.333333 438 84.571000 1975 3522 3 chr2D.!!$R3 1547
3 TraesCS2D01G383500 chr2D 487592922 487594209 1287 True 229.450000 472 83.596250 1645 3522 4 chr2D.!!$R2 1877
4 TraesCS2D01G383500 chr2D 487934289 487934904 615 True 219.500000 222 84.265500 889 1841 2 chr2D.!!$R4 952
5 TraesCS2D01G383500 chr2A 632589274 632596665 7391 True 1177.000000 2806 92.247333 697 5473 6 chr2A.!!$R1 4776
6 TraesCS2D01G383500 chr2A 631855700 631857664 1964 False 529.500000 573 80.147000 1926 4659 2 chr2A.!!$F2 2733
7 TraesCS2D01G383500 chr2A 46336250 46337794 1544 False 324.000000 483 81.474667 2232 4659 3 chr2A.!!$F1 2427
8 TraesCS2D01G383500 chr2B 572321766 572326680 4914 True 975.466667 1832 90.703833 314 4974 6 chr2B.!!$R4 4660
9 TraesCS2D01G383500 chr2B 571345487 571348035 2548 False 334.400000 497 83.513200 889 4659 5 chr2B.!!$F1 3770
10 TraesCS2D01G383500 chr2B 572178495 572180071 1576 True 248.060000 532 83.898200 1006 3522 5 chr2B.!!$R2 2516
11 TraesCS2D01G383500 chr2B 572311896 572314376 2480 True 209.633333 289 84.630000 888 4685 3 chr2B.!!$R3 3797
12 TraesCS2D01G383500 chr3D 16449401 16450164 763 False 479.000000 479 78.822000 3891 4659 1 chr3D.!!$F1 768
13 TraesCS2D01G383500 chr7D 446550535 446551622 1087 True 295.000000 344 85.228667 2232 4196 3 chr7D.!!$R1 1964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.036022 AGCTCTGTTCCTGGCTTGTC 59.964 55.0 0.0 0.0 0.00 3.18 F
359 360 0.038618 TGGTGAGAATGACGTGGACG 60.039 55.0 0.0 0.0 46.33 4.79 F
689 728 0.108520 GTCACAGCCGAAATCCCGTA 60.109 55.0 0.0 0.0 0.00 4.02 F
1389 1573 0.038166 TGAAAAGCCCCAGCCAGTAG 59.962 55.0 0.0 0.0 41.25 2.57 F
1390 1574 0.328258 GAAAAGCCCCAGCCAGTAGA 59.672 55.0 0.0 0.0 41.25 2.59 F
3008 3774 0.106708 GCGATCATTGGCTACCTGGA 59.893 55.0 0.0 0.0 0.00 3.86 F
3684 4628 0.629058 AATTACGCCCTCCAACCCAT 59.371 50.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1555 0.328258 TCTACTGGCTGGGGCTTTTC 59.672 55.000 0.0 0.0 38.73 2.29 R
1372 1556 0.329596 CTCTACTGGCTGGGGCTTTT 59.670 55.000 0.0 0.0 38.73 2.27 R
1663 2095 0.669318 CACACATCGGCCTGTACGTT 60.669 55.000 0.0 0.0 0.00 3.99 R
2974 3740 3.009026 TGATCGCAATAACACATGCAGT 58.991 40.909 0.0 0.0 42.68 4.40 R
3098 3864 3.055530 AGCTGATACTTCCCAACAGTCAG 60.056 47.826 0.0 0.0 35.82 3.51 R
4202 5264 0.607489 AAGGCGAGCAACAGCAGAAT 60.607 50.000 0.0 0.0 34.54 2.40 R
5103 6265 0.599204 TCCTTGAAACAGCGACCGAC 60.599 55.000 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.274067 CCTACCAAAGCCCAACGC 58.726 61.111 0.00 0.00 37.98 4.84
18 19 2.686816 CCTACCAAAGCCCAACGCG 61.687 63.158 3.53 3.53 44.76 6.01
19 20 1.669760 CTACCAAAGCCCAACGCGA 60.670 57.895 15.93 0.00 44.76 5.87
20 21 1.227883 TACCAAAGCCCAACGCGAA 60.228 52.632 15.93 0.00 44.76 4.70
21 22 0.818445 TACCAAAGCCCAACGCGAAA 60.818 50.000 15.93 0.00 44.76 3.46
22 23 1.066587 CCAAAGCCCAACGCGAAAA 59.933 52.632 15.93 0.00 44.76 2.29
23 24 0.528684 CCAAAGCCCAACGCGAAAAA 60.529 50.000 15.93 0.00 44.76 1.94
24 25 0.574922 CAAAGCCCAACGCGAAAAAC 59.425 50.000 15.93 0.00 44.76 2.43
25 26 0.528901 AAAGCCCAACGCGAAAAACC 60.529 50.000 15.93 0.00 44.76 3.27
26 27 1.388837 AAGCCCAACGCGAAAAACCT 61.389 50.000 15.93 0.00 44.76 3.50
27 28 0.535553 AGCCCAACGCGAAAAACCTA 60.536 50.000 15.93 0.00 44.76 3.08
28 29 0.109919 GCCCAACGCGAAAAACCTAG 60.110 55.000 15.93 0.00 0.00 3.02
29 30 0.519961 CCCAACGCGAAAAACCTAGG 59.480 55.000 15.93 7.41 0.00 3.02
30 31 0.109919 CCAACGCGAAAAACCTAGGC 60.110 55.000 15.93 0.00 0.00 3.93
31 32 0.109919 CAACGCGAAAAACCTAGGCC 60.110 55.000 15.93 0.00 0.00 5.19
32 33 1.239296 AACGCGAAAAACCTAGGCCC 61.239 55.000 15.93 0.00 0.00 5.80
33 34 2.746803 CGCGAAAAACCTAGGCCCG 61.747 63.158 9.30 6.59 0.00 6.13
34 35 1.376295 GCGAAAAACCTAGGCCCGA 60.376 57.895 9.30 0.00 0.00 5.14
35 36 1.366854 GCGAAAAACCTAGGCCCGAG 61.367 60.000 9.30 0.00 0.00 4.63
36 37 1.366854 CGAAAAACCTAGGCCCGAGC 61.367 60.000 9.30 0.00 38.76 5.03
49 50 2.905880 CGAGCCCGACCCGACTAT 60.906 66.667 0.00 0.00 38.22 2.12
50 51 2.905807 CGAGCCCGACCCGACTATC 61.906 68.421 0.00 0.00 38.22 2.08
51 52 2.905807 GAGCCCGACCCGACTATCG 61.906 68.421 0.00 0.00 40.07 2.92
63 64 3.765505 CGACTATCGGGCGTAAAAATC 57.234 47.619 0.00 0.00 42.39 2.17
64 65 3.117794 CGACTATCGGGCGTAAAAATCA 58.882 45.455 0.00 0.00 42.39 2.57
65 66 3.552699 CGACTATCGGGCGTAAAAATCAA 59.447 43.478 0.00 0.00 42.39 2.57
66 67 4.317839 CGACTATCGGGCGTAAAAATCAAG 60.318 45.833 0.00 0.00 42.39 3.02
67 68 2.844122 ATCGGGCGTAAAAATCAAGC 57.156 45.000 0.00 0.00 0.00 4.01
68 69 0.806241 TCGGGCGTAAAAATCAAGCC 59.194 50.000 0.00 0.00 46.51 4.35
71 72 2.734276 GGCGTAAAAATCAAGCCCAA 57.266 45.000 0.00 0.00 41.81 4.12
72 73 2.606108 GGCGTAAAAATCAAGCCCAAG 58.394 47.619 0.00 0.00 41.81 3.61
73 74 1.992667 GCGTAAAAATCAAGCCCAAGC 59.007 47.619 0.00 0.00 40.32 4.01
74 75 2.606108 CGTAAAAATCAAGCCCAAGCC 58.394 47.619 0.00 0.00 41.25 4.35
75 76 2.673893 CGTAAAAATCAAGCCCAAGCCC 60.674 50.000 0.00 0.00 41.25 5.19
76 77 0.321346 AAAAATCAAGCCCAAGCCCG 59.679 50.000 0.00 0.00 41.25 6.13
77 78 0.541764 AAAATCAAGCCCAAGCCCGA 60.542 50.000 0.00 0.00 41.25 5.14
78 79 1.250840 AAATCAAGCCCAAGCCCGAC 61.251 55.000 0.00 0.00 41.25 4.79
79 80 3.645268 ATCAAGCCCAAGCCCGACC 62.645 63.158 0.00 0.00 41.25 4.79
109 110 2.353573 GGCCGGGCCTCTTTGTTA 59.646 61.111 30.86 0.00 46.69 2.41
110 111 1.303806 GGCCGGGCCTCTTTGTTAA 60.304 57.895 30.86 0.00 46.69 2.01
111 112 0.896479 GGCCGGGCCTCTTTGTTAAA 60.896 55.000 30.86 0.00 46.69 1.52
112 113 0.242825 GCCGGGCCTCTTTGTTAAAC 59.757 55.000 8.12 0.00 0.00 2.01
113 114 1.905637 CCGGGCCTCTTTGTTAAACT 58.094 50.000 0.84 0.00 0.00 2.66
114 115 1.539827 CCGGGCCTCTTTGTTAAACTG 59.460 52.381 0.84 0.00 0.00 3.16
115 116 1.068541 CGGGCCTCTTTGTTAAACTGC 60.069 52.381 0.84 0.00 0.00 4.40
116 117 1.960689 GGGCCTCTTTGTTAAACTGCA 59.039 47.619 0.84 0.00 0.00 4.41
117 118 2.364002 GGGCCTCTTTGTTAAACTGCAA 59.636 45.455 0.84 0.00 0.00 4.08
118 119 3.181470 GGGCCTCTTTGTTAAACTGCAAA 60.181 43.478 0.84 0.00 34.05 3.68
119 120 4.503123 GGGCCTCTTTGTTAAACTGCAAAT 60.503 41.667 0.84 0.00 34.60 2.32
120 121 5.279256 GGGCCTCTTTGTTAAACTGCAAATA 60.279 40.000 0.84 0.00 34.60 1.40
121 122 6.398095 GGCCTCTTTGTTAAACTGCAAATAT 58.602 36.000 0.00 0.00 34.60 1.28
122 123 6.311200 GGCCTCTTTGTTAAACTGCAAATATG 59.689 38.462 0.00 0.00 34.60 1.78
123 124 7.090173 GCCTCTTTGTTAAACTGCAAATATGA 58.910 34.615 0.00 0.00 34.60 2.15
124 125 7.761249 GCCTCTTTGTTAAACTGCAAATATGAT 59.239 33.333 0.00 0.00 34.60 2.45
125 126 9.079833 CCTCTTTGTTAAACTGCAAATATGATG 57.920 33.333 0.00 0.00 34.60 3.07
126 127 8.984891 TCTTTGTTAAACTGCAAATATGATGG 57.015 30.769 0.00 0.00 34.60 3.51
127 128 8.034215 TCTTTGTTAAACTGCAAATATGATGGG 58.966 33.333 0.00 0.00 34.60 4.00
128 129 5.659463 TGTTAAACTGCAAATATGATGGGC 58.341 37.500 0.00 0.00 0.00 5.36
129 130 3.825143 AAACTGCAAATATGATGGGCC 57.175 42.857 0.00 0.00 0.00 5.80
130 131 1.708341 ACTGCAAATATGATGGGCCC 58.292 50.000 17.59 17.59 0.00 5.80
131 132 1.063038 ACTGCAAATATGATGGGCCCA 60.063 47.619 30.92 30.92 0.00 5.36
132 133 2.040939 CTGCAAATATGATGGGCCCAA 58.959 47.619 32.58 15.08 0.00 4.12
133 134 2.036733 CTGCAAATATGATGGGCCCAAG 59.963 50.000 32.58 13.98 0.00 3.61
134 135 1.270465 GCAAATATGATGGGCCCAAGC 60.270 52.381 32.58 24.34 38.76 4.01
170 171 2.424956 CCATCAGGCTCAAAAACTAGGC 59.575 50.000 0.00 0.00 38.50 3.93
171 172 2.200373 TCAGGCTCAAAAACTAGGCC 57.800 50.000 0.00 0.00 42.74 5.19
172 173 1.177401 CAGGCTCAAAAACTAGGCCC 58.823 55.000 0.00 0.00 43.36 5.80
173 174 0.777446 AGGCTCAAAAACTAGGCCCA 59.223 50.000 0.00 0.00 43.36 5.36
174 175 1.146982 AGGCTCAAAAACTAGGCCCAA 59.853 47.619 0.00 0.00 43.36 4.12
175 176 1.546029 GGCTCAAAAACTAGGCCCAAG 59.454 52.381 0.00 0.00 37.12 3.61
176 177 1.067565 GCTCAAAAACTAGGCCCAAGC 60.068 52.381 0.00 0.00 38.76 4.01
206 207 4.016706 CAAGGACGGGTCGGGCTT 62.017 66.667 0.00 0.00 0.00 4.35
207 208 3.246880 AAGGACGGGTCGGGCTTT 61.247 61.111 0.00 0.00 0.00 3.51
208 209 2.826003 AAGGACGGGTCGGGCTTTT 61.826 57.895 0.00 0.00 0.00 2.27
209 210 2.281970 GGACGGGTCGGGCTTTTT 60.282 61.111 0.00 0.00 0.00 1.94
244 245 2.427753 GGCAGGAATAGCCCGGAG 59.572 66.667 0.73 0.00 46.50 4.63
245 246 2.281139 GCAGGAATAGCCCGGAGC 60.281 66.667 0.73 4.57 44.25 4.70
246 247 2.427753 CAGGAATAGCCCGGAGCC 59.572 66.667 0.73 0.00 45.47 4.70
247 248 2.143419 CAGGAATAGCCCGGAGCCT 61.143 63.158 0.73 0.00 45.47 4.58
248 249 1.839296 AGGAATAGCCCGGAGCCTC 60.839 63.158 0.73 2.02 45.47 4.70
249 250 2.744377 GAATAGCCCGGAGCCTCC 59.256 66.667 0.73 0.00 45.47 4.30
250 251 2.040884 AATAGCCCGGAGCCTCCA 60.041 61.111 12.13 0.00 45.47 3.86
251 252 2.384653 GAATAGCCCGGAGCCTCCAC 62.385 65.000 12.13 0.00 45.47 4.02
258 259 4.035102 GGAGCCTCCACCCCACAC 62.035 72.222 5.69 0.00 36.28 3.82
259 260 2.930562 GAGCCTCCACCCCACACT 60.931 66.667 0.00 0.00 0.00 3.55
260 261 2.930562 AGCCTCCACCCCACACTC 60.931 66.667 0.00 0.00 0.00 3.51
261 262 3.249189 GCCTCCACCCCACACTCA 61.249 66.667 0.00 0.00 0.00 3.41
262 263 2.750350 CCTCCACCCCACACTCAC 59.250 66.667 0.00 0.00 0.00 3.51
263 264 2.750350 CTCCACCCCACACTCACC 59.250 66.667 0.00 0.00 0.00 4.02
264 265 2.040359 TCCACCCCACACTCACCA 60.040 61.111 0.00 0.00 0.00 4.17
265 266 2.113139 CCACCCCACACTCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
266 267 2.113139 CACCCCACACTCACCACC 59.887 66.667 0.00 0.00 0.00 4.61
267 268 3.556306 ACCCCACACTCACCACCG 61.556 66.667 0.00 0.00 0.00 4.94
284 285 4.400961 GCCCGCAGCTCTGTTCCT 62.401 66.667 0.00 0.00 38.99 3.36
285 286 2.435586 CCCGCAGCTCTGTTCCTG 60.436 66.667 0.00 0.00 0.00 3.86
286 287 2.435586 CCGCAGCTCTGTTCCTGG 60.436 66.667 0.00 0.00 0.00 4.45
287 288 3.123620 CGCAGCTCTGTTCCTGGC 61.124 66.667 0.00 0.00 0.00 4.85
288 289 2.350514 GCAGCTCTGTTCCTGGCT 59.649 61.111 0.00 0.00 35.23 4.75
289 290 1.303155 GCAGCTCTGTTCCTGGCTT 60.303 57.895 0.00 0.00 32.30 4.35
290 291 1.584380 GCAGCTCTGTTCCTGGCTTG 61.584 60.000 0.00 0.00 32.30 4.01
291 292 0.250640 CAGCTCTGTTCCTGGCTTGT 60.251 55.000 0.00 0.00 32.30 3.16
292 293 0.036022 AGCTCTGTTCCTGGCTTGTC 59.964 55.000 0.00 0.00 0.00 3.18
293 294 0.957888 GCTCTGTTCCTGGCTTGTCC 60.958 60.000 0.00 0.00 0.00 4.02
294 295 0.322008 CTCTGTTCCTGGCTTGTCCC 60.322 60.000 0.00 0.00 0.00 4.46
295 296 1.059584 TCTGTTCCTGGCTTGTCCCA 61.060 55.000 0.00 0.00 0.00 4.37
296 297 0.178992 CTGTTCCTGGCTTGTCCCAA 60.179 55.000 0.00 0.00 33.73 4.12
297 298 0.260230 TGTTCCTGGCTTGTCCCAAA 59.740 50.000 0.00 0.00 33.73 3.28
298 299 0.961753 GTTCCTGGCTTGTCCCAAAG 59.038 55.000 0.00 0.00 33.73 2.77
299 300 0.850100 TTCCTGGCTTGTCCCAAAGA 59.150 50.000 0.00 0.00 33.73 2.52
300 301 0.110486 TCCTGGCTTGTCCCAAAGAC 59.890 55.000 0.00 0.00 46.51 3.01
359 360 0.038618 TGGTGAGAATGACGTGGACG 60.039 55.000 0.00 0.00 46.33 4.79
371 372 2.280524 TGGACGGCGTGAAACTGG 60.281 61.111 21.19 0.00 31.75 4.00
401 423 4.334118 TGCAGTGCAGCACCCGAT 62.334 61.111 22.41 0.00 40.11 4.18
407 429 1.202580 AGTGCAGCACCCGATATCTTC 60.203 52.381 22.41 0.00 34.49 2.87
412 434 1.134521 AGCACCCGATATCTTCGCAAA 60.135 47.619 0.34 0.00 46.71 3.68
413 435 1.003866 GCACCCGATATCTTCGCAAAC 60.004 52.381 0.34 0.00 46.71 2.93
414 436 2.276201 CACCCGATATCTTCGCAAACA 58.724 47.619 0.34 0.00 46.71 2.83
419 441 4.970003 CCCGATATCTTCGCAAACATTTTC 59.030 41.667 0.34 0.00 46.71 2.29
420 442 5.220854 CCCGATATCTTCGCAAACATTTTCT 60.221 40.000 0.34 0.00 46.71 2.52
421 443 5.904080 CCGATATCTTCGCAAACATTTTCTC 59.096 40.000 0.34 0.00 46.71 2.87
422 444 6.238211 CCGATATCTTCGCAAACATTTTCTCT 60.238 38.462 0.34 0.00 46.71 3.10
439 461 3.321497 TCTCTTCTTTTCGCTGAGAAGC 58.679 45.455 13.34 0.00 45.33 3.86
440 462 3.062763 CTCTTCTTTTCGCTGAGAAGCA 58.937 45.455 13.34 5.64 45.33 3.91
452 474 1.002366 GAGAAGCATGTTCGCGTCAT 58.998 50.000 5.77 9.83 42.06 3.06
453 475 0.723414 AGAAGCATGTTCGCGTCATG 59.277 50.000 28.16 28.16 42.06 3.07
466 488 4.350441 TCATGCGTCACGGCGTCA 62.350 61.111 10.85 5.39 35.06 4.35
491 513 2.609491 CGAGTTGATCACGTTTCCCTCA 60.609 50.000 0.00 0.00 0.00 3.86
494 516 2.163818 TGATCACGTTTCCCTCACAC 57.836 50.000 0.00 0.00 0.00 3.82
505 540 1.347707 TCCCTCACACCATCTCAACAC 59.652 52.381 0.00 0.00 0.00 3.32
514 549 3.879295 CACCATCTCAACACACAAAGTCT 59.121 43.478 0.00 0.00 0.00 3.24
515 550 3.879295 ACCATCTCAACACACAAAGTCTG 59.121 43.478 0.00 0.00 0.00 3.51
587 626 0.388520 GAAACAATGGCGTGGGAAGC 60.389 55.000 0.00 0.00 0.00 3.86
591 630 1.173043 CAATGGCGTGGGAAGCTTTA 58.827 50.000 0.00 0.00 34.52 1.85
600 639 2.062636 TGGGAAGCTTTACAGACCCTT 58.937 47.619 17.10 0.00 38.28 3.95
601 640 2.039879 TGGGAAGCTTTACAGACCCTTC 59.960 50.000 17.10 0.00 38.28 3.46
681 720 1.597854 CTGCTTGGTCACAGCCGAA 60.598 57.895 0.00 0.00 0.00 4.30
682 721 1.153066 TGCTTGGTCACAGCCGAAA 60.153 52.632 0.00 0.00 0.00 3.46
683 722 0.537143 TGCTTGGTCACAGCCGAAAT 60.537 50.000 0.00 0.00 0.00 2.17
684 723 0.169009 GCTTGGTCACAGCCGAAATC 59.831 55.000 0.00 0.00 0.00 2.17
685 724 0.804989 CTTGGTCACAGCCGAAATCC 59.195 55.000 0.00 0.00 0.00 3.01
686 725 0.608035 TTGGTCACAGCCGAAATCCC 60.608 55.000 0.00 0.00 0.00 3.85
687 726 2.106683 GGTCACAGCCGAAATCCCG 61.107 63.158 0.00 0.00 0.00 5.14
688 727 1.375523 GTCACAGCCGAAATCCCGT 60.376 57.895 0.00 0.00 0.00 5.28
689 728 0.108520 GTCACAGCCGAAATCCCGTA 60.109 55.000 0.00 0.00 0.00 4.02
690 729 0.174845 TCACAGCCGAAATCCCGTAG 59.825 55.000 0.00 0.00 0.00 3.51
712 751 3.726517 CCACGGCACCTTTCAGCG 61.727 66.667 0.00 0.00 0.00 5.18
715 754 3.793144 CGGCACCTTTCAGCGAGC 61.793 66.667 0.00 0.00 0.00 5.03
731 770 4.133796 GCCCAGGCGTGCATTTCC 62.134 66.667 0.00 0.00 0.00 3.13
733 772 2.274645 CCCAGGCGTGCATTTCCAA 61.275 57.895 0.00 0.00 0.00 3.53
761 800 2.126110 CGGGAAATTTGCCCACGC 60.126 61.111 21.63 2.33 46.36 5.34
771 810 4.776647 GCCCACGCCACGCAAATC 62.777 66.667 0.00 0.00 0.00 2.17
773 812 4.459331 CCACGCCACGCAAATCCG 62.459 66.667 0.00 0.00 0.00 4.18
774 813 3.418913 CACGCCACGCAAATCCGA 61.419 61.111 0.00 0.00 0.00 4.55
775 814 3.419759 ACGCCACGCAAATCCGAC 61.420 61.111 0.00 0.00 0.00 4.79
776 815 4.499023 CGCCACGCAAATCCGACG 62.499 66.667 0.00 0.00 0.00 5.12
954 998 2.478709 CGATCGCACTTTACTCTCTGCT 60.479 50.000 0.26 0.00 0.00 4.24
961 1005 4.388469 GCACTTTACTCTCTGCTTTCTCTG 59.612 45.833 0.00 0.00 0.00 3.35
962 1006 5.537188 CACTTTACTCTCTGCTTTCTCTGT 58.463 41.667 0.00 0.00 0.00 3.41
966 1010 3.495331 ACTCTCTGCTTTCTCTGTCTCA 58.505 45.455 0.00 0.00 0.00 3.27
969 1013 3.505680 TCTCTGCTTTCTCTGTCTCACTC 59.494 47.826 0.00 0.00 0.00 3.51
972 1016 2.298446 TGCTTTCTCTGTCTCACTCTGG 59.702 50.000 0.00 0.00 0.00 3.86
974 1018 2.001076 TTCTCTGTCTCACTCTGGCA 57.999 50.000 0.00 0.00 0.00 4.92
991 1050 2.029073 ACACGCACTGGTTCTCGG 59.971 61.111 0.00 0.00 0.00 4.63
1222 1318 2.279069 CGGCACCAGGTGAGACTCT 61.279 63.158 24.96 0.00 35.23 3.24
1228 1324 1.689273 ACCAGGTGAGACTCTGTTGAC 59.311 52.381 3.68 0.00 0.00 3.18
1274 1370 0.396695 TTAGGGTCTAGGGCGACTGG 60.397 60.000 0.00 0.00 34.38 4.00
1309 1413 2.152016 GGTCAACTTTCCCTTTCCTCG 58.848 52.381 0.00 0.00 0.00 4.63
1310 1414 2.486727 GGTCAACTTTCCCTTTCCTCGT 60.487 50.000 0.00 0.00 0.00 4.18
1355 1539 6.145535 CCATTCTTTGCTCTGTTCTTTGTAC 58.854 40.000 0.00 0.00 0.00 2.90
1357 1541 5.991328 TCTTTGCTCTGTTCTTTGTACTG 57.009 39.130 0.00 0.00 0.00 2.74
1360 1544 6.701841 TCTTTGCTCTGTTCTTTGTACTGTAG 59.298 38.462 0.00 0.00 0.00 2.74
1371 1555 5.753438 TCTTTGTACTGTAGTTGCTCTGTTG 59.247 40.000 0.00 0.00 0.00 3.33
1372 1556 4.929819 TGTACTGTAGTTGCTCTGTTGA 57.070 40.909 0.00 0.00 0.00 3.18
1373 1557 5.270893 TGTACTGTAGTTGCTCTGTTGAA 57.729 39.130 0.00 0.00 0.00 2.69
1374 1558 5.666462 TGTACTGTAGTTGCTCTGTTGAAA 58.334 37.500 0.00 0.00 0.00 2.69
1375 1559 6.110033 TGTACTGTAGTTGCTCTGTTGAAAA 58.890 36.000 0.00 0.00 0.00 2.29
1376 1560 5.741388 ACTGTAGTTGCTCTGTTGAAAAG 57.259 39.130 0.00 0.00 0.00 2.27
1377 1561 4.035675 ACTGTAGTTGCTCTGTTGAAAAGC 59.964 41.667 0.00 0.00 36.56 3.51
1378 1562 3.315191 TGTAGTTGCTCTGTTGAAAAGCC 59.685 43.478 0.00 0.00 35.12 4.35
1379 1563 1.683385 AGTTGCTCTGTTGAAAAGCCC 59.317 47.619 0.00 0.00 35.12 5.19
1380 1564 1.039856 TTGCTCTGTTGAAAAGCCCC 58.960 50.000 0.00 0.00 35.12 5.80
1381 1565 0.106268 TGCTCTGTTGAAAAGCCCCA 60.106 50.000 0.00 0.00 35.12 4.96
1382 1566 0.600057 GCTCTGTTGAAAAGCCCCAG 59.400 55.000 0.00 0.00 0.00 4.45
1383 1567 0.600057 CTCTGTTGAAAAGCCCCAGC 59.400 55.000 0.00 0.00 40.32 4.85
1384 1568 0.827507 TCTGTTGAAAAGCCCCAGCC 60.828 55.000 0.00 0.00 41.25 4.85
1385 1569 1.075674 TGTTGAAAAGCCCCAGCCA 60.076 52.632 0.00 0.00 41.25 4.75
1386 1570 1.114722 TGTTGAAAAGCCCCAGCCAG 61.115 55.000 0.00 0.00 41.25 4.85
1387 1571 1.115326 GTTGAAAAGCCCCAGCCAGT 61.115 55.000 0.00 0.00 41.25 4.00
1388 1572 0.480690 TTGAAAAGCCCCAGCCAGTA 59.519 50.000 0.00 0.00 41.25 2.74
1389 1573 0.038166 TGAAAAGCCCCAGCCAGTAG 59.962 55.000 0.00 0.00 41.25 2.57
1390 1574 0.328258 GAAAAGCCCCAGCCAGTAGA 59.672 55.000 0.00 0.00 41.25 2.59
1391 1575 0.329596 AAAAGCCCCAGCCAGTAGAG 59.670 55.000 0.00 0.00 41.25 2.43
1392 1576 2.203549 AAAGCCCCAGCCAGTAGAGC 62.204 60.000 0.00 0.00 41.25 4.09
1393 1577 3.402681 GCCCCAGCCAGTAGAGCA 61.403 66.667 0.00 0.00 0.00 4.26
1394 1578 2.586792 CCCCAGCCAGTAGAGCAC 59.413 66.667 0.00 0.00 0.00 4.40
1519 1706 0.379669 CTGAGCACCATTGGCGAATC 59.620 55.000 1.54 0.00 36.08 2.52
1622 2053 4.365723 ACAATTCTTTGAGTGCTTGCTTG 58.634 39.130 0.00 0.00 36.64 4.01
1638 2069 1.922570 CTTGCTCATTGCTCAATGGC 58.077 50.000 19.04 19.39 46.08 4.40
1640 2071 2.423446 TGCTCATTGCTCAATGGCTA 57.577 45.000 23.35 14.29 46.08 3.93
1649 2080 2.094675 GCTCAATGGCTATGGTGTTGT 58.905 47.619 0.00 0.00 0.00 3.32
1663 2095 2.032302 GGTGTTGTTTGATGCACGTACA 59.968 45.455 0.00 0.00 33.09 2.90
1875 2337 6.460953 GCTGTGTTCCCTTTAATTCAGACAAA 60.461 38.462 0.00 0.00 0.00 2.83
1904 2380 8.360325 TCTAATAGATTGCGCTTTTTAATCGA 57.640 30.769 9.73 5.81 36.27 3.59
1910 2386 4.678509 TGCGCTTTTTAATCGAAGATGT 57.321 36.364 9.73 0.00 45.12 3.06
1924 2400 7.644986 ATCGAAGATGTATTGCTAGCTTTAC 57.355 36.000 17.23 16.60 45.12 2.01
1942 2418 7.940850 AGCTTTACTGTTGTTTGATGTACAAT 58.059 30.769 0.00 0.00 37.77 2.71
2082 2570 1.218316 GCGGTTACTGGAGGGAGTG 59.782 63.158 0.00 0.00 0.00 3.51
2206 2709 8.506437 TGTTCTCTAGCTGATTTGTTTTGTATG 58.494 33.333 0.00 0.00 0.00 2.39
2389 3087 7.496529 TTTAATCTGATACAGTATGCTTGCC 57.503 36.000 0.00 0.00 42.53 4.52
2681 3419 5.350914 CCTGATCTGTTTTCTGACATCTCAC 59.649 44.000 0.00 0.00 0.00 3.51
2700 3438 6.680810 TCTCACAAACCTGCATCATTTTTAG 58.319 36.000 0.00 0.00 0.00 1.85
2709 3447 7.669427 ACCTGCATCATTTTTAGAATTTGTCA 58.331 30.769 0.00 0.00 0.00 3.58
2771 3509 9.613428 TTAATTAGCTGCATGACTTACATTAGT 57.387 29.630 1.02 0.00 37.07 2.24
2813 3551 5.185442 TGTTTGGATTATTGCTCAATGCTCA 59.815 36.000 5.43 0.00 43.37 4.26
2852 3591 4.796312 CGTTGTTAACCCTCAAAGTTTGTG 59.204 41.667 15.08 12.47 0.00 3.33
2870 3609 7.680730 AGTTTGTGTCTGTAACCTGATATTCT 58.319 34.615 0.00 0.00 0.00 2.40
2974 3740 6.014925 TCACACTAGAAGGCACAACATAAGTA 60.015 38.462 0.00 0.00 0.00 2.24
2975 3741 6.090898 CACACTAGAAGGCACAACATAAGTAC 59.909 42.308 0.00 0.00 0.00 2.73
2976 3742 6.014499 ACACTAGAAGGCACAACATAAGTACT 60.014 38.462 0.00 0.00 0.00 2.73
2977 3743 6.311445 CACTAGAAGGCACAACATAAGTACTG 59.689 42.308 0.00 0.00 0.00 2.74
2978 3744 4.003648 AGAAGGCACAACATAAGTACTGC 58.996 43.478 0.00 0.00 32.28 4.40
2979 3745 3.417069 AGGCACAACATAAGTACTGCA 57.583 42.857 0.00 0.00 33.87 4.41
2983 3749 4.406069 GCACAACATAAGTACTGCATGTG 58.594 43.478 19.02 17.82 37.60 3.21
3007 3773 0.179048 TGCGATCATTGGCTACCTGG 60.179 55.000 0.00 0.00 0.00 4.45
3008 3774 0.106708 GCGATCATTGGCTACCTGGA 59.893 55.000 0.00 0.00 0.00 3.86
3019 3785 5.290493 TGGCTACCTGGATAACACATAAG 57.710 43.478 0.00 0.00 0.00 1.73
3021 3787 4.444306 GGCTACCTGGATAACACATAAGCA 60.444 45.833 0.00 0.00 0.00 3.91
3042 3808 4.801891 CAATTCATAAGTTGCACTGCACT 58.198 39.130 2.26 1.84 38.71 4.40
3066 3832 8.584157 ACTTGCAAATGGTAATAACAAAGATGA 58.416 29.630 0.00 0.00 0.00 2.92
3084 3850 9.017669 CAAAGATGAGCAAATACATTAAGAAGC 57.982 33.333 0.00 0.00 0.00 3.86
3098 3864 6.768381 ACATTAAGAAGCTGACTTAATAGGCC 59.232 38.462 25.19 0.00 43.87 5.19
3101 3867 4.033709 AGAAGCTGACTTAATAGGCCTGA 58.966 43.478 17.99 0.00 35.82 3.86
3103 3869 3.379452 AGCTGACTTAATAGGCCTGACT 58.621 45.455 17.99 1.33 0.00 3.41
3118 3885 3.866651 CCTGACTGTTGGGAAGTATCAG 58.133 50.000 0.00 0.00 0.00 2.90
3119 3886 3.265791 CTGACTGTTGGGAAGTATCAGC 58.734 50.000 0.00 0.00 0.00 4.26
3120 3887 2.906389 TGACTGTTGGGAAGTATCAGCT 59.094 45.455 0.00 0.00 0.00 4.24
3121 3888 4.093743 TGACTGTTGGGAAGTATCAGCTA 58.906 43.478 0.00 0.00 0.00 3.32
3168 3941 1.756430 TTATAACCATGGCGCTTGCA 58.244 45.000 13.04 0.00 41.71 4.08
3179 3956 1.205064 CGCTTGCAGTTCTGAACCG 59.795 57.895 16.48 8.13 0.00 4.44
3267 4086 5.182001 GGTGGTAAGTCTCGAGTACACTTTA 59.818 44.000 19.46 7.60 32.56 1.85
3484 4315 2.022195 CTGGAGGGTGCAATCAATCAG 58.978 52.381 0.00 0.00 0.00 2.90
3541 4372 6.373495 GGGTAAATTCCAGTTCGTTCTATGTT 59.627 38.462 0.00 0.00 0.00 2.71
3565 4396 3.194755 TGCTGCTCAAAATGATGCATCTT 59.805 39.130 26.32 18.05 32.87 2.40
3672 4616 9.989394 GAGTTTTTGAAATGAAACTAATTACGC 57.011 29.630 1.88 0.00 43.88 4.42
3673 4617 8.974408 AGTTTTTGAAATGAAACTAATTACGCC 58.026 29.630 0.05 0.00 42.52 5.68
3674 4618 7.876896 TTTTGAAATGAAACTAATTACGCCC 57.123 32.000 0.00 0.00 0.00 6.13
3675 4619 6.827586 TTGAAATGAAACTAATTACGCCCT 57.172 33.333 0.00 0.00 0.00 5.19
3676 4620 6.431198 TGAAATGAAACTAATTACGCCCTC 57.569 37.500 0.00 0.00 0.00 4.30
3677 4621 5.355910 TGAAATGAAACTAATTACGCCCTCC 59.644 40.000 0.00 0.00 0.00 4.30
3678 4622 3.985019 TGAAACTAATTACGCCCTCCA 57.015 42.857 0.00 0.00 0.00 3.86
3679 4623 4.289238 TGAAACTAATTACGCCCTCCAA 57.711 40.909 0.00 0.00 0.00 3.53
3680 4624 4.004982 TGAAACTAATTACGCCCTCCAAC 58.995 43.478 0.00 0.00 0.00 3.77
3681 4625 2.704464 ACTAATTACGCCCTCCAACC 57.296 50.000 0.00 0.00 0.00 3.77
3682 4626 1.211212 ACTAATTACGCCCTCCAACCC 59.789 52.381 0.00 0.00 0.00 4.11
3683 4627 1.210967 CTAATTACGCCCTCCAACCCA 59.789 52.381 0.00 0.00 0.00 4.51
3684 4628 0.629058 AATTACGCCCTCCAACCCAT 59.371 50.000 0.00 0.00 0.00 4.00
3685 4629 1.513858 ATTACGCCCTCCAACCCATA 58.486 50.000 0.00 0.00 0.00 2.74
3686 4630 1.513858 TTACGCCCTCCAACCCATAT 58.486 50.000 0.00 0.00 0.00 1.78
3687 4631 1.513858 TACGCCCTCCAACCCATATT 58.486 50.000 0.00 0.00 0.00 1.28
3688 4632 1.513858 ACGCCCTCCAACCCATATTA 58.486 50.000 0.00 0.00 0.00 0.98
3689 4633 1.847737 ACGCCCTCCAACCCATATTAA 59.152 47.619 0.00 0.00 0.00 1.40
3690 4634 2.445525 ACGCCCTCCAACCCATATTAAT 59.554 45.455 0.00 0.00 0.00 1.40
3691 4635 3.117284 ACGCCCTCCAACCCATATTAATT 60.117 43.478 0.00 0.00 0.00 1.40
3692 4636 3.895041 CGCCCTCCAACCCATATTAATTT 59.105 43.478 0.00 0.00 0.00 1.82
3693 4637 4.261994 CGCCCTCCAACCCATATTAATTTG 60.262 45.833 0.00 0.00 0.00 2.32
3694 4638 4.040339 GCCCTCCAACCCATATTAATTTGG 59.960 45.833 15.82 15.82 38.48 3.28
3695 4639 5.463154 CCCTCCAACCCATATTAATTTGGA 58.537 41.667 22.34 18.35 42.73 3.53
3696 4640 6.084060 CCCTCCAACCCATATTAATTTGGAT 58.916 40.000 22.34 6.26 43.67 3.41
3697 4641 6.211384 CCCTCCAACCCATATTAATTTGGATC 59.789 42.308 22.34 0.00 43.67 3.36
3698 4642 6.071952 CCTCCAACCCATATTAATTTGGATCG 60.072 42.308 22.34 10.96 43.67 3.69
3699 4643 5.772672 TCCAACCCATATTAATTTGGATCGG 59.227 40.000 22.34 17.95 40.63 4.18
3700 4644 5.772672 CCAACCCATATTAATTTGGATCGGA 59.227 40.000 22.34 0.00 39.33 4.55
3701 4645 6.071952 CCAACCCATATTAATTTGGATCGGAG 60.072 42.308 22.34 9.78 39.33 4.63
3702 4646 5.570320 ACCCATATTAATTTGGATCGGAGG 58.430 41.667 22.34 9.20 34.81 4.30
3703 4647 4.949856 CCCATATTAATTTGGATCGGAGGG 59.050 45.833 22.34 3.54 34.81 4.30
3704 4648 5.280985 CCCATATTAATTTGGATCGGAGGGA 60.281 44.000 22.34 0.00 34.81 4.20
3705 4649 5.882557 CCATATTAATTTGGATCGGAGGGAG 59.117 44.000 17.39 0.00 34.81 4.30
3706 4650 6.476378 CATATTAATTTGGATCGGAGGGAGT 58.524 40.000 0.00 0.00 0.00 3.85
3707 4651 7.311046 CCATATTAATTTGGATCGGAGGGAGTA 60.311 40.741 17.39 0.00 34.81 2.59
3708 4652 5.961398 TTAATTTGGATCGGAGGGAGTAA 57.039 39.130 0.00 0.00 0.00 2.24
3709 4653 3.840124 ATTTGGATCGGAGGGAGTAAC 57.160 47.619 0.00 0.00 0.00 2.50
3710 4654 2.544844 TTGGATCGGAGGGAGTAACT 57.455 50.000 0.00 0.00 0.00 2.24
3711 4655 2.544844 TGGATCGGAGGGAGTAACTT 57.455 50.000 0.00 0.00 0.00 2.66
3765 4799 2.355132 GCTTCATGGTGCTGAGAAGATG 59.645 50.000 0.00 0.00 39.78 2.90
3766 4800 2.034104 TCATGGTGCTGAGAAGATGC 57.966 50.000 0.00 0.00 0.00 3.91
3789 4823 4.327357 CGGCAACAGTACTCTGAAACTATG 59.673 45.833 5.79 0.00 43.76 2.23
3796 4830 6.154534 ACAGTACTCTGAAACTATGGCATACA 59.845 38.462 2.32 0.00 43.76 2.29
3910 4965 3.436359 CAGTGCTTTGTTTTGCCAACTTT 59.564 39.130 0.00 0.00 0.00 2.66
3911 4966 4.629200 CAGTGCTTTGTTTTGCCAACTTTA 59.371 37.500 0.00 0.00 0.00 1.85
3912 4967 5.294060 CAGTGCTTTGTTTTGCCAACTTTAT 59.706 36.000 0.00 0.00 0.00 1.40
3920 4979 3.921119 TTGCCAACTTTATGTCTGCTG 57.079 42.857 0.00 0.00 0.00 4.41
4084 5143 2.571202 TGGATTTGAAAATGGGCCTTCC 59.429 45.455 4.53 0.00 0.00 3.46
4201 5263 6.638096 TCCATAAATATGCAACACATGGAG 57.362 37.500 13.38 0.00 40.06 3.86
4202 5264 6.363882 TCCATAAATATGCAACACATGGAGA 58.636 36.000 13.38 0.00 40.06 3.71
4236 5298 1.251251 GCCTTCACCATTTGCACTCT 58.749 50.000 0.00 0.00 0.00 3.24
4384 5462 1.314534 TGCAACAATGGCATCTCCGG 61.315 55.000 0.00 0.00 36.11 5.14
4580 5711 2.226330 CAAGAAACCACCCAACGATGA 58.774 47.619 0.00 0.00 0.00 2.92
4618 5749 7.945664 TGTTGGGTTAATCAGTAGTTTATGGTT 59.054 33.333 0.00 0.00 0.00 3.67
4643 5788 4.044426 GCCTTTGTAAGTTTCACTGCAAG 58.956 43.478 0.00 0.00 42.29 4.01
4722 5870 1.652167 GCTCTAGCTTGGCCACTTGC 61.652 60.000 3.88 11.05 38.21 4.01
4727 5875 2.337532 CTTGGCCACTTGCAGCAC 59.662 61.111 3.88 0.00 43.89 4.40
4730 5878 3.677648 GGCCACTTGCAGCACCAG 61.678 66.667 0.00 0.00 43.89 4.00
4779 5927 0.745845 GCGGCTGTGACTTCATCCAT 60.746 55.000 0.00 0.00 0.00 3.41
4814 5962 9.224267 CTTTCTCTTGAGAATCCACAATCTTTA 57.776 33.333 13.04 0.00 0.00 1.85
4888 6036 0.821711 TCCCTTTCCTTGTTGGTGCG 60.822 55.000 0.00 0.00 37.07 5.34
4893 6041 2.285827 TTCCTTGTTGGTGCGTTTTG 57.714 45.000 0.00 0.00 37.07 2.44
5019 6181 4.038642 GGAAGTACTTCAAATGTGGCCAAA 59.961 41.667 31.30 0.15 41.20 3.28
5020 6182 5.452636 GGAAGTACTTCAAATGTGGCCAAAA 60.453 40.000 31.30 0.00 41.20 2.44
5083 6245 1.479021 GGCCGTAGTAGAGGTCTGGAT 60.479 57.143 0.00 0.00 0.00 3.41
5102 6264 0.751277 TTGGTGTGGCAGAGGTTGTG 60.751 55.000 0.00 0.00 0.00 3.33
5103 6265 1.898574 GGTGTGGCAGAGGTTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
5104 6266 1.152963 GTGTGGCAGAGGTTGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
5105 6267 1.148273 TGTGGCAGAGGTTGTGGTC 59.852 57.895 0.00 0.00 0.00 4.02
5205 6367 5.529289 TGGTAAGGAATCATCTAGGACTGT 58.471 41.667 0.00 0.00 0.00 3.55
5374 6536 9.439537 GATTTCTTCTTACTTTGACTTGTTGAC 57.560 33.333 0.00 0.00 0.00 3.18
5375 6537 8.561738 TTTCTTCTTACTTTGACTTGTTGACT 57.438 30.769 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.686816 CGCGTTGGGCTTTGGTAGG 61.687 63.158 0.00 0.00 40.44 3.18
1 2 1.231958 TTCGCGTTGGGCTTTGGTAG 61.232 55.000 5.77 0.00 40.44 3.18
3 4 1.668101 TTTTCGCGTTGGGCTTTGGT 61.668 50.000 5.77 0.00 40.44 3.67
4 5 0.528684 TTTTTCGCGTTGGGCTTTGG 60.529 50.000 5.77 0.00 40.44 3.28
6 7 0.528901 GGTTTTTCGCGTTGGGCTTT 60.529 50.000 5.77 0.00 40.44 3.51
7 8 1.066752 GGTTTTTCGCGTTGGGCTT 59.933 52.632 5.77 0.00 40.44 4.35
8 9 0.535553 TAGGTTTTTCGCGTTGGGCT 60.536 50.000 5.77 0.00 40.44 5.19
9 10 0.109919 CTAGGTTTTTCGCGTTGGGC 60.110 55.000 5.77 0.00 38.69 5.36
10 11 0.519961 CCTAGGTTTTTCGCGTTGGG 59.480 55.000 5.77 0.00 0.00 4.12
11 12 0.109919 GCCTAGGTTTTTCGCGTTGG 60.110 55.000 11.31 0.00 0.00 3.77
12 13 0.109919 GGCCTAGGTTTTTCGCGTTG 60.110 55.000 11.31 0.00 0.00 4.10
13 14 1.239296 GGGCCTAGGTTTTTCGCGTT 61.239 55.000 11.31 0.00 0.00 4.84
14 15 1.673337 GGGCCTAGGTTTTTCGCGT 60.673 57.895 11.31 0.00 0.00 6.01
15 16 2.746803 CGGGCCTAGGTTTTTCGCG 61.747 63.158 11.31 9.40 0.00 5.87
16 17 1.366854 CTCGGGCCTAGGTTTTTCGC 61.367 60.000 11.31 0.33 0.00 4.70
17 18 1.366854 GCTCGGGCCTAGGTTTTTCG 61.367 60.000 11.31 7.70 0.00 3.46
18 19 2.478989 GCTCGGGCCTAGGTTTTTC 58.521 57.895 11.31 0.00 0.00 2.29
19 20 4.736739 GCTCGGGCCTAGGTTTTT 57.263 55.556 11.31 0.00 0.00 1.94
32 33 2.905807 GATAGTCGGGTCGGGCTCG 61.906 68.421 0.00 0.00 43.78 5.03
33 34 2.905807 CGATAGTCGGGTCGGGCTC 61.906 68.421 0.00 0.00 36.00 4.70
34 35 2.905880 CGATAGTCGGGTCGGGCT 60.906 66.667 0.00 0.00 36.00 5.19
43 44 3.117794 TGATTTTTACGCCCGATAGTCG 58.882 45.455 0.00 0.00 40.07 4.18
44 45 4.552184 GCTTGATTTTTACGCCCGATAGTC 60.552 45.833 0.00 0.00 0.00 2.59
45 46 3.311596 GCTTGATTTTTACGCCCGATAGT 59.688 43.478 0.00 0.00 0.00 2.12
46 47 3.303791 GGCTTGATTTTTACGCCCGATAG 60.304 47.826 0.00 0.00 34.75 2.08
47 48 2.614983 GGCTTGATTTTTACGCCCGATA 59.385 45.455 0.00 0.00 34.75 2.92
48 49 1.404035 GGCTTGATTTTTACGCCCGAT 59.596 47.619 0.00 0.00 34.75 4.18
49 50 0.806241 GGCTTGATTTTTACGCCCGA 59.194 50.000 0.00 0.00 34.75 5.14
50 51 3.322526 GGCTTGATTTTTACGCCCG 57.677 52.632 0.00 0.00 34.75 6.13
52 53 2.606108 CTTGGGCTTGATTTTTACGCC 58.394 47.619 0.00 0.00 39.98 5.68
53 54 1.992667 GCTTGGGCTTGATTTTTACGC 59.007 47.619 0.00 0.00 35.22 4.42
54 55 2.606108 GGCTTGGGCTTGATTTTTACG 58.394 47.619 0.00 0.00 38.73 3.18
55 56 2.673893 CGGGCTTGGGCTTGATTTTTAC 60.674 50.000 0.00 0.00 38.73 2.01
56 57 1.548269 CGGGCTTGGGCTTGATTTTTA 59.452 47.619 0.00 0.00 38.73 1.52
57 58 0.321346 CGGGCTTGGGCTTGATTTTT 59.679 50.000 0.00 0.00 38.73 1.94
58 59 0.541764 TCGGGCTTGGGCTTGATTTT 60.542 50.000 0.00 0.00 38.73 1.82
59 60 1.076549 TCGGGCTTGGGCTTGATTT 59.923 52.632 0.00 0.00 38.73 2.17
60 61 1.678970 GTCGGGCTTGGGCTTGATT 60.679 57.895 0.00 0.00 38.73 2.57
61 62 2.044946 GTCGGGCTTGGGCTTGAT 60.045 61.111 0.00 0.00 38.73 2.57
62 63 4.344865 GGTCGGGCTTGGGCTTGA 62.345 66.667 0.00 0.00 38.73 3.02
67 68 4.856801 CGATGGGTCGGGCTTGGG 62.857 72.222 0.00 0.00 44.00 4.12
93 94 0.242825 GTTTAACAAAGAGGCCCGGC 59.757 55.000 0.00 0.00 0.00 6.13
94 95 1.539827 CAGTTTAACAAAGAGGCCCGG 59.460 52.381 0.00 0.00 0.00 5.73
95 96 1.068541 GCAGTTTAACAAAGAGGCCCG 60.069 52.381 0.00 0.00 0.00 6.13
96 97 1.960689 TGCAGTTTAACAAAGAGGCCC 59.039 47.619 0.00 0.00 0.00 5.80
97 98 3.726291 TTGCAGTTTAACAAAGAGGCC 57.274 42.857 0.00 0.00 0.00 5.19
98 99 7.090173 TCATATTTGCAGTTTAACAAAGAGGC 58.910 34.615 0.00 0.00 39.01 4.70
99 100 9.079833 CATCATATTTGCAGTTTAACAAAGAGG 57.920 33.333 0.00 0.00 39.01 3.69
100 101 9.079833 CCATCATATTTGCAGTTTAACAAAGAG 57.920 33.333 0.00 0.00 39.01 2.85
101 102 8.034215 CCCATCATATTTGCAGTTTAACAAAGA 58.966 33.333 0.00 0.00 39.01 2.52
102 103 7.201548 GCCCATCATATTTGCAGTTTAACAAAG 60.202 37.037 0.00 0.00 39.01 2.77
103 104 6.593382 GCCCATCATATTTGCAGTTTAACAAA 59.407 34.615 0.00 0.00 39.87 2.83
104 105 6.105333 GCCCATCATATTTGCAGTTTAACAA 58.895 36.000 0.00 0.00 0.00 2.83
105 106 5.395103 GGCCCATCATATTTGCAGTTTAACA 60.395 40.000 0.00 0.00 0.00 2.41
106 107 5.049828 GGCCCATCATATTTGCAGTTTAAC 58.950 41.667 0.00 0.00 0.00 2.01
107 108 4.100808 GGGCCCATCATATTTGCAGTTTAA 59.899 41.667 19.95 0.00 0.00 1.52
108 109 3.640967 GGGCCCATCATATTTGCAGTTTA 59.359 43.478 19.95 0.00 0.00 2.01
109 110 2.435437 GGGCCCATCATATTTGCAGTTT 59.565 45.455 19.95 0.00 0.00 2.66
110 111 2.041701 GGGCCCATCATATTTGCAGTT 58.958 47.619 19.95 0.00 0.00 3.16
111 112 1.063038 TGGGCCCATCATATTTGCAGT 60.063 47.619 24.45 0.00 0.00 4.40
112 113 1.707106 TGGGCCCATCATATTTGCAG 58.293 50.000 24.45 0.00 0.00 4.41
113 114 2.040939 CTTGGGCCCATCATATTTGCA 58.959 47.619 29.23 5.08 0.00 4.08
114 115 1.270465 GCTTGGGCCCATCATATTTGC 60.270 52.381 29.23 15.38 0.00 3.68
115 116 2.825861 GCTTGGGCCCATCATATTTG 57.174 50.000 29.23 9.50 0.00 2.32
149 150 2.424956 GCCTAGTTTTTGAGCCTGATGG 59.575 50.000 0.00 0.00 0.00 3.51
150 151 2.424956 GGCCTAGTTTTTGAGCCTGATG 59.575 50.000 0.00 0.00 40.57 3.07
151 152 2.621668 GGGCCTAGTTTTTGAGCCTGAT 60.622 50.000 0.84 0.00 43.36 2.90
152 153 1.271926 GGGCCTAGTTTTTGAGCCTGA 60.272 52.381 0.84 0.00 43.36 3.86
153 154 1.177401 GGGCCTAGTTTTTGAGCCTG 58.823 55.000 0.84 0.00 43.36 4.85
154 155 0.777446 TGGGCCTAGTTTTTGAGCCT 59.223 50.000 4.53 0.00 43.36 4.58
155 156 1.546029 CTTGGGCCTAGTTTTTGAGCC 59.454 52.381 4.53 0.00 43.09 4.70
156 157 1.067565 GCTTGGGCCTAGTTTTTGAGC 60.068 52.381 16.33 0.00 0.00 4.26
189 190 3.546714 AAAGCCCGACCCGTCCTTG 62.547 63.158 0.00 0.00 0.00 3.61
190 191 2.347691 AAAAAGCCCGACCCGTCCTT 62.348 55.000 0.00 0.00 0.00 3.36
191 192 2.826003 AAAAAGCCCGACCCGTCCT 61.826 57.895 0.00 0.00 0.00 3.85
192 193 2.281970 AAAAAGCCCGACCCGTCC 60.282 61.111 0.00 0.00 0.00 4.79
228 229 2.281139 GCTCCGGGCTATTCCTGC 60.281 66.667 0.00 0.00 40.05 4.85
229 230 2.143419 AGGCTCCGGGCTATTCCTG 61.143 63.158 13.58 0.00 46.85 3.86
230 231 2.287251 AGGCTCCGGGCTATTCCT 59.713 61.111 13.58 3.62 46.85 3.36
241 242 4.035102 GTGTGGGGTGGAGGCTCC 62.035 72.222 26.95 26.95 36.96 4.70
242 243 2.930562 AGTGTGGGGTGGAGGCTC 60.931 66.667 5.78 5.78 0.00 4.70
243 244 2.930562 GAGTGTGGGGTGGAGGCT 60.931 66.667 0.00 0.00 0.00 4.58
244 245 3.249189 TGAGTGTGGGGTGGAGGC 61.249 66.667 0.00 0.00 0.00 4.70
245 246 2.750350 GTGAGTGTGGGGTGGAGG 59.250 66.667 0.00 0.00 0.00 4.30
246 247 2.146724 TGGTGAGTGTGGGGTGGAG 61.147 63.158 0.00 0.00 0.00 3.86
247 248 2.040359 TGGTGAGTGTGGGGTGGA 60.040 61.111 0.00 0.00 0.00 4.02
248 249 2.113139 GTGGTGAGTGTGGGGTGG 59.887 66.667 0.00 0.00 0.00 4.61
249 250 2.113139 GGTGGTGAGTGTGGGGTG 59.887 66.667 0.00 0.00 0.00 4.61
250 251 3.556306 CGGTGGTGAGTGTGGGGT 61.556 66.667 0.00 0.00 0.00 4.95
267 268 4.400961 AGGAACAGAGCTGCGGGC 62.401 66.667 0.00 0.00 42.19 6.13
268 269 2.435586 CAGGAACAGAGCTGCGGG 60.436 66.667 0.00 0.00 0.00 6.13
269 270 2.435586 CCAGGAACAGAGCTGCGG 60.436 66.667 0.00 0.00 0.00 5.69
270 271 3.123620 GCCAGGAACAGAGCTGCG 61.124 66.667 0.00 0.00 0.00 5.18
271 272 1.303155 AAGCCAGGAACAGAGCTGC 60.303 57.895 0.00 0.00 35.30 5.25
272 273 0.250640 ACAAGCCAGGAACAGAGCTG 60.251 55.000 0.00 0.00 35.30 4.24
273 274 0.036022 GACAAGCCAGGAACAGAGCT 59.964 55.000 0.00 0.00 37.10 4.09
274 275 0.957888 GGACAAGCCAGGAACAGAGC 60.958 60.000 0.00 0.00 36.34 4.09
275 276 0.322008 GGGACAAGCCAGGAACAGAG 60.322 60.000 0.00 0.00 38.95 3.35
276 277 1.059584 TGGGACAAGCCAGGAACAGA 61.060 55.000 0.00 0.00 38.95 3.41
277 278 1.455849 TGGGACAAGCCAGGAACAG 59.544 57.895 0.00 0.00 38.95 3.16
278 279 3.667476 TGGGACAAGCCAGGAACA 58.333 55.556 0.00 0.00 38.95 3.18
289 290 2.029964 GTCGCCGTCTTTGGGACA 59.970 61.111 0.00 0.00 44.70 4.02
290 291 3.110178 CGTCGCCGTCTTTGGGAC 61.110 66.667 0.00 0.00 40.96 4.46
291 292 3.296836 TCGTCGCCGTCTTTGGGA 61.297 61.111 0.00 0.00 35.01 4.37
292 293 3.110178 GTCGTCGCCGTCTTTGGG 61.110 66.667 0.00 0.00 35.01 4.12
293 294 3.110178 GGTCGTCGCCGTCTTTGG 61.110 66.667 0.00 0.00 35.01 3.28
294 295 2.355363 TGGTCGTCGCCGTCTTTG 60.355 61.111 0.00 0.00 35.01 2.77
295 296 2.049433 CTGGTCGTCGCCGTCTTT 60.049 61.111 0.00 0.00 35.01 2.52
296 297 4.719369 GCTGGTCGTCGCCGTCTT 62.719 66.667 0.00 0.00 35.01 3.01
325 326 4.404691 CCAGGAACAGGTTGAGCC 57.595 61.111 0.00 0.00 37.58 4.70
339 340 1.714794 GTCCACGTCATTCTCACCAG 58.285 55.000 0.00 0.00 0.00 4.00
359 360 2.117941 GACTGTGCCAGTTTCACGCC 62.118 60.000 8.90 0.00 45.44 5.68
365 366 0.471617 AGCTGAGACTGTGCCAGTTT 59.528 50.000 8.90 4.08 45.44 2.66
371 372 1.301558 ACTGCAGCTGAGACTGTGC 60.302 57.895 20.43 0.00 39.96 4.57
401 423 7.672983 AGAAGAGAAAATGTTTGCGAAGATA 57.327 32.000 0.00 0.00 0.00 1.98
407 429 5.608206 GCGAAAAGAAGAGAAAATGTTTGCG 60.608 40.000 0.00 0.00 34.83 4.85
412 434 5.760253 TCTCAGCGAAAAGAAGAGAAAATGT 59.240 36.000 0.00 0.00 32.83 2.71
413 435 6.233430 TCTCAGCGAAAAGAAGAGAAAATG 57.767 37.500 0.00 0.00 32.83 2.32
414 436 6.867662 TTCTCAGCGAAAAGAAGAGAAAAT 57.132 33.333 0.00 0.00 41.01 1.82
470 492 1.993370 GAGGGAAACGTGATCAACTCG 59.007 52.381 0.00 0.00 40.62 4.18
491 513 3.620488 ACTTTGTGTGTTGAGATGGTGT 58.380 40.909 0.00 0.00 0.00 4.16
494 516 3.251729 CCAGACTTTGTGTGTTGAGATGG 59.748 47.826 0.00 0.00 0.00 3.51
505 540 6.401153 GCGAAAGATAACTACCAGACTTTGTG 60.401 42.308 0.00 0.00 0.00 3.33
514 549 5.291293 GCTTTTGCGAAAGATAACTACCA 57.709 39.130 27.38 0.00 44.03 3.25
540 577 1.148310 CAAACGGACAGTTCTGCGAT 58.852 50.000 0.00 0.00 43.37 4.58
546 583 2.943653 CGGGCAAACGGACAGTTC 59.056 61.111 0.00 0.00 43.37 3.01
564 603 0.243636 CCCACGCCATTGTTTCTTCC 59.756 55.000 0.00 0.00 0.00 3.46
587 626 3.196685 CAGGAGGAGAAGGGTCTGTAAAG 59.803 52.174 0.00 0.00 32.80 1.85
591 630 0.907230 GCAGGAGGAGAAGGGTCTGT 60.907 60.000 0.00 0.00 32.80 3.41
658 697 1.069765 CTGTGACCAAGCAGGACGT 59.930 57.895 1.83 0.00 41.22 4.34
660 699 1.968540 GGCTGTGACCAAGCAGGAC 60.969 63.158 1.83 0.00 41.22 3.85
662 701 3.052082 CGGCTGTGACCAAGCAGG 61.052 66.667 0.00 0.00 45.67 4.85
663 702 1.165907 TTTCGGCTGTGACCAAGCAG 61.166 55.000 0.00 0.00 35.93 4.24
681 720 3.846955 CGTGGTTTCCTACGGGATT 57.153 52.632 0.00 0.00 41.87 3.01
686 725 2.030958 GGTGCCGTGGTTTCCTACG 61.031 63.158 0.00 0.00 39.83 3.51
687 726 0.250597 AAGGTGCCGTGGTTTCCTAC 60.251 55.000 0.00 0.00 0.00 3.18
688 727 0.475044 AAAGGTGCCGTGGTTTCCTA 59.525 50.000 0.00 0.00 0.00 2.94
689 728 0.822121 GAAAGGTGCCGTGGTTTCCT 60.822 55.000 0.00 0.00 0.00 3.36
690 729 1.104577 TGAAAGGTGCCGTGGTTTCC 61.105 55.000 0.00 0.00 0.00 3.13
691 730 0.310854 CTGAAAGGTGCCGTGGTTTC 59.689 55.000 0.00 0.00 0.00 2.78
692 731 1.734388 GCTGAAAGGTGCCGTGGTTT 61.734 55.000 0.00 0.00 0.00 3.27
695 734 3.726517 CGCTGAAAGGTGCCGTGG 61.727 66.667 0.00 0.00 0.00 4.94
712 751 3.056313 GAAATGCACGCCTGGGCTC 62.056 63.158 10.04 0.00 39.32 4.70
715 754 2.216750 CTTGGAAATGCACGCCTGGG 62.217 60.000 0.00 0.00 0.00 4.45
744 783 2.126110 GCGTGGGCAAATTTCCCG 60.126 61.111 16.28 10.08 46.92 5.14
745 784 2.264480 GGCGTGGGCAAATTTCCC 59.736 61.111 15.15 15.15 44.17 3.97
748 787 2.338257 CGTGGCGTGGGCAAATTT 59.662 55.556 0.00 0.00 40.46 1.82
749 788 4.356442 GCGTGGCGTGGGCAAATT 62.356 61.111 0.00 0.00 40.46 1.82
761 800 3.496131 CCCGTCGGATTTGCGTGG 61.496 66.667 14.39 0.00 0.00 4.94
938 982 4.388469 CAGAGAAAGCAGAGAGTAAAGTGC 59.612 45.833 0.00 0.00 36.10 4.40
944 988 4.457603 GTGAGACAGAGAAAGCAGAGAGTA 59.542 45.833 0.00 0.00 0.00 2.59
954 998 2.036475 GTGCCAGAGTGAGACAGAGAAA 59.964 50.000 0.00 0.00 0.00 2.52
961 1005 2.024319 GCGTGTGCCAGAGTGAGAC 61.024 63.158 0.00 0.00 33.98 3.36
962 1006 2.340078 GCGTGTGCCAGAGTGAGA 59.660 61.111 0.00 0.00 33.98 3.27
966 1010 2.280389 CAGTGCGTGTGCCAGAGT 60.280 61.111 0.00 0.00 41.78 3.24
969 1013 2.896801 GAACCAGTGCGTGTGCCAG 61.897 63.158 0.00 0.00 41.78 4.85
972 1016 2.939022 GAGAACCAGTGCGTGTGC 59.061 61.111 0.00 0.00 43.20 4.57
974 1018 2.029073 CCGAGAACCAGTGCGTGT 59.971 61.111 0.00 0.00 0.00 4.49
1004 1069 2.411290 CACAAACCCACCACGCAC 59.589 61.111 0.00 0.00 0.00 5.34
1096 1179 2.920912 ACCCTTCTCGGTCGGCAA 60.921 61.111 0.00 0.00 0.00 4.52
1274 1370 3.381590 AGTTGACCAAAAGTTTCAGCTCC 59.618 43.478 0.00 0.00 0.00 4.70
1355 1539 4.531332 GCTTTTCAACAGAGCAACTACAG 58.469 43.478 0.00 0.00 36.45 2.74
1357 1541 3.304726 GGGCTTTTCAACAGAGCAACTAC 60.305 47.826 0.00 0.00 38.14 2.73
1360 1544 1.269778 GGGGCTTTTCAACAGAGCAAC 60.270 52.381 0.00 0.00 38.14 4.17
1371 1555 0.328258 TCTACTGGCTGGGGCTTTTC 59.672 55.000 0.00 0.00 38.73 2.29
1372 1556 0.329596 CTCTACTGGCTGGGGCTTTT 59.670 55.000 0.00 0.00 38.73 2.27
1373 1557 1.994463 CTCTACTGGCTGGGGCTTT 59.006 57.895 0.00 0.00 38.73 3.51
1374 1558 2.674220 GCTCTACTGGCTGGGGCTT 61.674 63.158 0.00 0.00 38.73 4.35
1375 1559 3.086600 GCTCTACTGGCTGGGGCT 61.087 66.667 0.00 0.00 38.73 5.19
1376 1560 3.402681 TGCTCTACTGGCTGGGGC 61.403 66.667 0.00 0.00 37.82 5.80
1377 1561 0.687757 TAGTGCTCTACTGGCTGGGG 60.688 60.000 0.00 0.00 40.65 4.96
1378 1562 0.461961 GTAGTGCTCTACTGGCTGGG 59.538 60.000 16.80 0.00 42.15 4.45
1379 1563 1.186200 TGTAGTGCTCTACTGGCTGG 58.814 55.000 22.64 0.00 44.74 4.85
1380 1564 3.533606 ATTGTAGTGCTCTACTGGCTG 57.466 47.619 22.64 0.00 44.74 4.85
1381 1565 3.639094 CCTATTGTAGTGCTCTACTGGCT 59.361 47.826 22.64 10.04 44.74 4.75
1382 1566 3.243907 CCCTATTGTAGTGCTCTACTGGC 60.244 52.174 22.64 1.64 44.74 4.85
1383 1567 4.215908 TCCCTATTGTAGTGCTCTACTGG 58.784 47.826 22.64 18.06 44.74 4.00
1384 1568 7.231722 ACTTATCCCTATTGTAGTGCTCTACTG 59.768 40.741 22.64 12.18 44.74 2.74
1385 1569 7.299134 ACTTATCCCTATTGTAGTGCTCTACT 58.701 38.462 22.64 9.50 44.74 2.57
1386 1570 7.527568 ACTTATCCCTATTGTAGTGCTCTAC 57.472 40.000 17.14 17.14 44.72 2.59
1387 1571 8.446394 ACTACTTATCCCTATTGTAGTGCTCTA 58.554 37.037 0.00 0.00 41.21 2.43
1388 1572 7.299134 ACTACTTATCCCTATTGTAGTGCTCT 58.701 38.462 0.00 0.00 41.21 4.09
1389 1573 7.527568 ACTACTTATCCCTATTGTAGTGCTC 57.472 40.000 0.00 0.00 41.21 4.26
1390 1574 7.916077 AACTACTTATCCCTATTGTAGTGCT 57.084 36.000 0.00 0.00 41.70 4.40
1391 1575 9.694137 CTTAACTACTTATCCCTATTGTAGTGC 57.306 37.037 0.00 0.00 41.70 4.40
1445 1629 3.929610 GCACTTAGACAGGAAGCAAGTAG 59.070 47.826 0.00 0.00 0.00 2.57
1638 2069 3.058293 ACGTGCATCAAACAACACCATAG 60.058 43.478 0.00 0.00 0.00 2.23
1640 2071 1.680735 ACGTGCATCAAACAACACCAT 59.319 42.857 0.00 0.00 0.00 3.55
1663 2095 0.669318 CACACATCGGCCTGTACGTT 60.669 55.000 0.00 0.00 0.00 3.99
1904 2380 7.607991 ACAACAGTAAAGCTAGCAATACATCTT 59.392 33.333 23.63 13.00 0.00 2.40
1910 2386 7.737972 TCAAACAACAGTAAAGCTAGCAATA 57.262 32.000 18.83 6.44 0.00 1.90
1924 2400 4.869215 TGCCATTGTACATCAAACAACAG 58.131 39.130 0.00 0.00 39.51 3.16
1942 2418 3.812609 CACAAGTACACAACAGTATGCCA 59.187 43.478 0.00 0.00 42.53 4.92
2082 2570 3.056821 GGTTTGCTGTTTATCACCTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
2385 3083 6.488769 TTCTAATTAGGGATAAGACGGCAA 57.511 37.500 12.54 0.00 0.00 4.52
2594 3308 9.434275 TCTTCCATCCAAGAAACACTATAGATA 57.566 33.333 6.78 0.00 29.01 1.98
2600 3314 5.513094 CCTGTCTTCCATCCAAGAAACACTA 60.513 44.000 0.00 0.00 34.11 2.74
2681 3419 8.776470 ACAAATTCTAAAAATGATGCAGGTTTG 58.224 29.630 0.00 0.00 0.00 2.93
2709 3447 8.823220 ATAAAGCCATGTAGACATACCTTTTT 57.177 30.769 17.58 11.38 37.22 1.94
2813 3551 5.560966 AACAACGAAAACACTCTCAACAT 57.439 34.783 0.00 0.00 0.00 2.71
2822 3560 4.619437 TGAGGGTTAACAACGAAAACAC 57.381 40.909 8.10 0.00 0.00 3.32
2824 3562 5.643664 ACTTTGAGGGTTAACAACGAAAAC 58.356 37.500 8.10 0.00 0.00 2.43
2830 3569 5.716094 ACACAAACTTTGAGGGTTAACAAC 58.284 37.500 8.10 0.00 0.00 3.32
2852 3591 5.128827 TGGGTCAGAATATCAGGTTACAGAC 59.871 44.000 0.00 0.00 0.00 3.51
2870 3609 8.934023 AAGTAAGAATTTATTGTCTTGGGTCA 57.066 30.769 0.00 0.00 35.69 4.02
2974 3740 3.009026 TGATCGCAATAACACATGCAGT 58.991 40.909 0.00 0.00 42.68 4.40
2975 3741 3.678915 TGATCGCAATAACACATGCAG 57.321 42.857 0.00 0.00 42.68 4.41
2976 3742 4.352887 CAATGATCGCAATAACACATGCA 58.647 39.130 0.00 0.00 42.68 3.96
2977 3743 3.732219 CCAATGATCGCAATAACACATGC 59.268 43.478 0.00 0.00 39.17 4.06
2978 3744 3.732219 GCCAATGATCGCAATAACACATG 59.268 43.478 0.00 0.00 0.00 3.21
2979 3745 3.633525 AGCCAATGATCGCAATAACACAT 59.366 39.130 0.00 0.00 0.00 3.21
2983 3749 3.815401 AGGTAGCCAATGATCGCAATAAC 59.185 43.478 0.00 0.00 0.00 1.89
3008 3774 9.520204 GCAACTTATGAATTGCTTATGTGTTAT 57.480 29.630 0.00 0.00 46.21 1.89
3042 3808 7.545265 GCTCATCTTTGTTATTACCATTTGCAA 59.455 33.333 0.00 0.00 0.00 4.08
3066 3832 7.693969 AAGTCAGCTTCTTAATGTATTTGCT 57.306 32.000 0.00 0.00 0.00 3.91
3077 3843 5.661312 TCAGGCCTATTAAGTCAGCTTCTTA 59.339 40.000 3.98 4.57 36.22 2.10
3084 3850 4.744795 ACAGTCAGGCCTATTAAGTCAG 57.255 45.455 3.98 0.00 0.00 3.51
3098 3864 3.055530 AGCTGATACTTCCCAACAGTCAG 60.056 47.826 0.00 0.00 35.82 3.51
3101 3867 4.097418 AGTAGCTGATACTTCCCAACAGT 58.903 43.478 0.00 0.00 42.30 3.55
3103 3869 5.516044 TCTAGTAGCTGATACTTCCCAACA 58.484 41.667 11.20 0.00 42.30 3.33
3119 3886 7.118390 ACTGCTACAACAAAAATGCTCTAGTAG 59.882 37.037 0.00 0.00 0.00 2.57
3120 3887 6.934645 ACTGCTACAACAAAAATGCTCTAGTA 59.065 34.615 0.00 0.00 0.00 1.82
3121 3888 5.765182 ACTGCTACAACAAAAATGCTCTAGT 59.235 36.000 0.00 0.00 0.00 2.57
3168 3941 3.771577 AGGATTGAACGGTTCAGAACT 57.228 42.857 21.47 17.10 41.38 3.01
3179 3956 5.689383 TTCACTGCAAAGTAGGATTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
3267 4086 5.636903 AGATGCCACTAACCAGTATGAAT 57.363 39.130 0.00 0.00 39.69 2.57
3463 4294 1.355381 TGATTGATTGCACCCTCCAGT 59.645 47.619 0.00 0.00 0.00 4.00
3484 4315 8.283992 CACATGAAAAGAATATCAGCATCTCTC 58.716 37.037 0.00 0.00 0.00 3.20
3541 4372 3.388345 TGCATCATTTTGAGCAGCAAA 57.612 38.095 0.00 1.19 44.38 3.68
3555 4386 2.170397 TCCGAGGCTTAAAGATGCATCA 59.830 45.455 27.81 5.22 39.57 3.07
3585 4418 8.015087 TGAGTTATAACACAAAAAGATGCTTCG 58.985 33.333 17.65 0.00 0.00 3.79
3588 4421 9.013229 TCATGAGTTATAACACAAAAAGATGCT 57.987 29.630 17.81 0.00 33.38 3.79
3666 4610 1.513858 TATGGGTTGGAGGGCGTAAT 58.486 50.000 0.00 0.00 0.00 1.89
3667 4611 1.513858 ATATGGGTTGGAGGGCGTAA 58.486 50.000 0.00 0.00 0.00 3.18
3668 4612 1.513858 AATATGGGTTGGAGGGCGTA 58.486 50.000 0.00 0.00 0.00 4.42
3669 4613 1.513858 TAATATGGGTTGGAGGGCGT 58.486 50.000 0.00 0.00 0.00 5.68
3670 4614 2.649531 TTAATATGGGTTGGAGGGCG 57.350 50.000 0.00 0.00 0.00 6.13
3671 4615 4.040339 CCAAATTAATATGGGTTGGAGGGC 59.960 45.833 9.40 0.00 41.05 5.19
3672 4616 5.463154 TCCAAATTAATATGGGTTGGAGGG 58.537 41.667 12.54 0.00 42.12 4.30
3676 4620 6.024552 CCGATCCAAATTAATATGGGTTGG 57.975 41.667 8.88 8.88 43.40 3.77
3677 4621 6.071952 CCTCCGATCCAAATTAATATGGGTTG 60.072 42.308 0.00 0.00 37.31 3.77
3678 4622 6.010219 CCTCCGATCCAAATTAATATGGGTT 58.990 40.000 0.00 0.00 37.31 4.11
3679 4623 5.516591 CCCTCCGATCCAAATTAATATGGGT 60.517 44.000 0.00 0.00 37.31 4.51
3680 4624 4.949856 CCCTCCGATCCAAATTAATATGGG 59.050 45.833 0.00 0.00 37.31 4.00
3681 4625 5.815581 TCCCTCCGATCCAAATTAATATGG 58.184 41.667 0.00 0.00 38.09 2.74
3682 4626 6.476378 ACTCCCTCCGATCCAAATTAATATG 58.524 40.000 0.00 0.00 0.00 1.78
3683 4627 6.704056 ACTCCCTCCGATCCAAATTAATAT 57.296 37.500 0.00 0.00 0.00 1.28
3684 4628 7.291651 AGTTACTCCCTCCGATCCAAATTAATA 59.708 37.037 0.00 0.00 0.00 0.98
3685 4629 6.101296 AGTTACTCCCTCCGATCCAAATTAAT 59.899 38.462 0.00 0.00 0.00 1.40
3686 4630 5.427481 AGTTACTCCCTCCGATCCAAATTAA 59.573 40.000 0.00 0.00 0.00 1.40
3687 4631 4.966805 AGTTACTCCCTCCGATCCAAATTA 59.033 41.667 0.00 0.00 0.00 1.40
3688 4632 3.780850 AGTTACTCCCTCCGATCCAAATT 59.219 43.478 0.00 0.00 0.00 1.82
3689 4633 3.385115 AGTTACTCCCTCCGATCCAAAT 58.615 45.455 0.00 0.00 0.00 2.32
3690 4634 2.829023 AGTTACTCCCTCCGATCCAAA 58.171 47.619 0.00 0.00 0.00 3.28
3691 4635 2.544844 AGTTACTCCCTCCGATCCAA 57.455 50.000 0.00 0.00 0.00 3.53
3692 4636 2.544844 AAGTTACTCCCTCCGATCCA 57.455 50.000 0.00 0.00 0.00 3.41
3693 4637 5.163332 ACAAATAAGTTACTCCCTCCGATCC 60.163 44.000 0.00 0.00 0.00 3.36
3694 4638 5.915175 ACAAATAAGTTACTCCCTCCGATC 58.085 41.667 0.00 0.00 0.00 3.69
3695 4639 5.952347 ACAAATAAGTTACTCCCTCCGAT 57.048 39.130 0.00 0.00 0.00 4.18
3696 4640 5.750352 AACAAATAAGTTACTCCCTCCGA 57.250 39.130 0.00 0.00 0.00 4.55
3697 4641 8.502105 AATTAACAAATAAGTTACTCCCTCCG 57.498 34.615 0.00 0.00 33.96 4.63
3698 4642 9.457436 TGAATTAACAAATAAGTTACTCCCTCC 57.543 33.333 0.00 0.00 33.96 4.30
3765 4799 1.194772 GTTTCAGAGTACTGTTGCCGC 59.805 52.381 0.00 0.00 43.81 6.53
3766 4800 2.755650 AGTTTCAGAGTACTGTTGCCG 58.244 47.619 0.00 0.00 43.81 5.69
3789 4823 1.839424 AGCCCTTCAAGTTGTATGCC 58.161 50.000 2.11 0.00 0.00 4.40
3796 4830 1.143684 TGAGCTCAAGCCCTTCAAGTT 59.856 47.619 15.67 0.00 43.38 2.66
3910 4965 9.082313 TGAGAAGATACATTATCAGCAGACATA 57.918 33.333 0.00 0.00 37.65 2.29
3911 4966 7.871973 GTGAGAAGATACATTATCAGCAGACAT 59.128 37.037 0.00 0.00 37.65 3.06
3912 4967 7.069208 AGTGAGAAGATACATTATCAGCAGACA 59.931 37.037 0.00 0.00 37.65 3.41
4084 5143 2.548904 GCTTCTAGCAGCCTCAATCATG 59.451 50.000 2.57 0.00 41.89 3.07
4201 5263 1.023513 AGGCGAGCAACAGCAGAATC 61.024 55.000 0.00 0.00 34.54 2.52
4202 5264 0.607489 AAGGCGAGCAACAGCAGAAT 60.607 50.000 0.00 0.00 34.54 2.40
4236 5298 2.698797 ACCGGAAACAGAAAGAGTGAGA 59.301 45.455 9.46 0.00 0.00 3.27
4384 5462 2.121538 GCTTCCCTCATTTCGGCCC 61.122 63.158 0.00 0.00 0.00 5.80
4580 5711 2.118076 CCAACACCACATGGGGCT 59.882 61.111 15.93 0.00 44.30 5.19
4674 5822 6.012745 AGAGCTAAAGGAAAATCCACACATT 58.987 36.000 0.00 0.00 39.61 2.71
4675 5823 5.574188 AGAGCTAAAGGAAAATCCACACAT 58.426 37.500 0.00 0.00 39.61 3.21
4722 5870 2.927871 GCCAAATTGCTAACTGGTGCTG 60.928 50.000 0.00 0.00 0.00 4.41
4727 5875 1.273048 TGCAGCCAAATTGCTAACTGG 59.727 47.619 0.00 0.00 40.32 4.00
4730 5878 2.068519 GGTTGCAGCCAAATTGCTAAC 58.931 47.619 15.64 0.00 40.32 2.34
4762 5910 3.350833 AGAAATGGATGAAGTCACAGCC 58.649 45.455 0.00 0.00 45.24 4.85
4814 5962 0.980423 GCTCCAAGGAAGAGACCACT 59.020 55.000 0.00 0.00 32.86 4.00
4888 6036 6.068473 AGTAAGAATCCGGTTGTTCAAAAC 57.932 37.500 0.00 5.15 0.00 2.43
4893 6041 5.293569 CCACATAGTAAGAATCCGGTTGTTC 59.706 44.000 0.00 5.11 0.00 3.18
5019 6181 2.551071 GCTGCCTTCAAGTGTCCTAGTT 60.551 50.000 0.00 0.00 0.00 2.24
5020 6182 1.002544 GCTGCCTTCAAGTGTCCTAGT 59.997 52.381 0.00 0.00 0.00 2.57
5083 6245 0.751277 CACAACCTCTGCCACACCAA 60.751 55.000 0.00 0.00 0.00 3.67
5102 6264 1.566018 CCTTGAAACAGCGACCGACC 61.566 60.000 0.00 0.00 0.00 4.79
5103 6265 0.599204 TCCTTGAAACAGCGACCGAC 60.599 55.000 0.00 0.00 0.00 4.79
5104 6266 0.599204 GTCCTTGAAACAGCGACCGA 60.599 55.000 0.00 0.00 0.00 4.69
5105 6267 1.860078 GTCCTTGAAACAGCGACCG 59.140 57.895 0.00 0.00 0.00 4.79
5135 6297 6.323996 CCTACTGGTCACATAACTCTTCCATA 59.676 42.308 0.00 0.00 0.00 2.74
5140 6302 5.187967 CCTTCCTACTGGTCACATAACTCTT 59.812 44.000 0.00 0.00 34.23 2.85
5225 6387 8.553459 AATTGACGTCATTTCTCTAACTCATT 57.447 30.769 20.80 8.19 0.00 2.57
5374 6536 6.128172 ACGAAATTCCAAGCAAGTCTTCATAG 60.128 38.462 0.00 0.00 31.27 2.23
5375 6537 5.705441 ACGAAATTCCAAGCAAGTCTTCATA 59.295 36.000 0.00 0.00 31.27 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.