Multiple sequence alignment - TraesCS2D01G383100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G383100 chr2D 100.000 3740 0 0 1 3740 487359812 487363551 0.000000e+00 6907.0
1 TraesCS2D01G383100 chr2D 91.370 1518 94 15 1077 2577 18303136 18304633 0.000000e+00 2043.0
2 TraesCS2D01G383100 chr2D 92.120 368 16 9 2663 3029 503448583 503448228 1.200000e-139 507.0
3 TraesCS2D01G383100 chr2D 95.736 258 7 3 818 1072 477990592 477990848 2.690000e-111 412.0
4 TraesCS2D01G383100 chr2D 94.677 263 13 1 817 1078 503448227 503448489 1.250000e-109 407.0
5 TraesCS2D01G383100 chr2D 94.961 258 11 1 817 1072 477992136 477991879 1.620000e-108 403.0
6 TraesCS2D01G383100 chr2D 94.615 260 13 1 818 1076 503449850 503449591 5.820000e-108 401.0
7 TraesCS2D01G383100 chr2D 96.739 92 3 0 2591 2682 22206117 22206026 1.800000e-33 154.0
8 TraesCS2D01G383100 chr2D 94.565 92 5 0 2591 2682 503449296 503449205 3.890000e-30 143.0
9 TraesCS2D01G383100 chr2A 93.113 1510 89 7 1077 2577 19446933 19448436 0.000000e+00 2198.0
10 TraesCS2D01G383100 chr2A 82.927 738 58 21 3030 3738 632473312 632474010 1.490000e-168 603.0
11 TraesCS2D01G383100 chr2A 82.184 696 51 29 1 643 632498021 632498696 7.110000e-147 531.0
12 TraesCS2D01G383100 chr2A 84.797 467 37 14 3165 3600 632500813 632501276 4.430000e-119 438.0
13 TraesCS2D01G383100 chr2A 85.096 208 24 7 141 345 632472140 632472343 4.900000e-49 206.0
14 TraesCS2D01G383100 chr2A 83.262 233 30 9 589 816 632473091 632473319 4.900000e-49 206.0
15 TraesCS2D01G383100 chr2A 87.209 172 9 5 645 816 632500481 632500639 2.290000e-42 183.0
16 TraesCS2D01G383100 chr2A 84.516 155 16 4 448 594 632472381 632472535 3.010000e-31 147.0
17 TraesCS2D01G383100 chr2A 86.111 144 8 3 3 146 632471222 632471353 1.080000e-30 145.0
18 TraesCS2D01G383100 chr2A 87.963 108 6 1 3042 3142 632500642 632500749 1.820000e-23 121.0
19 TraesCS2D01G383100 chr2A 89.655 87 9 0 2596 2682 24066644 24066558 1.100000e-20 111.0
20 TraesCS2D01G383100 chr2A 92.208 77 4 2 3663 3738 632501286 632501361 1.420000e-19 108.0
21 TraesCS2D01G383100 chr2B 88.292 1546 109 34 1077 2577 30429699 30431217 0.000000e+00 1786.0
22 TraesCS2D01G383100 chr2B 88.592 561 31 12 3211 3738 572111578 572112138 0.000000e+00 651.0
23 TraesCS2D01G383100 chr2B 83.303 551 32 19 1 531 572111022 572111532 1.580000e-123 453.0
24 TraesCS2D01G383100 chr2B 100.000 37 0 0 1 37 572105492 572105528 6.700000e-08 69.4
25 TraesCS2D01G383100 chr5A 82.368 777 87 28 1751 2487 119031159 119031925 6.820000e-177 630.0
26 TraesCS2D01G383100 chr5A 96.970 99 2 1 2663 2760 461850478 461850576 8.310000e-37 165.0
27 TraesCS2D01G383100 chr4B 82.239 777 88 25 1751 2487 334214436 334213670 3.170000e-175 625.0
28 TraesCS2D01G383100 chr1D 93.548 372 13 9 2663 3030 46225 46589 9.140000e-151 544.0
29 TraesCS2D01G383100 chr1D 93.688 301 11 6 2730 3029 44843 44550 9.530000e-121 444.0
30 TraesCS2D01G383100 chr1D 93.609 266 9 3 818 1080 46588 46328 1.260000e-104 390.0
31 TraesCS2D01G383100 chr5D 94.706 340 10 6 2691 3029 378329129 378328797 4.280000e-144 521.0
32 TraesCS2D01G383100 chr5D 92.169 332 16 8 2707 3032 378331906 378332233 9.460000e-126 460.0
33 TraesCS2D01G383100 chr5D 93.609 266 14 2 818 1080 378332229 378331964 9.740000e-106 394.0
34 TraesCS2D01G383100 chr5D 91.873 283 14 4 816 1095 378328795 378329071 1.630000e-103 387.0
35 TraesCS2D01G383100 chr5D 97.980 99 1 1 2663 2760 360972506 360972604 1.790000e-38 171.0
36 TraesCS2D01G383100 chr5D 98.795 83 1 0 2691 2773 559441963 559442045 8.370000e-32 148.0
37 TraesCS2D01G383100 chr5D 98.246 57 1 0 2623 2679 513661241 513661185 2.380000e-17 100.0
38 TraesCS2D01G383100 chrUn 81.193 654 106 9 1078 1729 16338284 16337646 9.270000e-141 510.0
39 TraesCS2D01G383100 chrUn 80.580 448 61 14 1287 1729 16378485 16378911 4.660000e-84 322.0
40 TraesCS2D01G383100 chrUn 85.590 229 30 1 1725 1950 16379526 16379754 1.740000e-58 237.0
41 TraesCS2D01G383100 chrUn 90.476 84 8 0 2596 2679 277922455 277922538 1.100000e-20 111.0
42 TraesCS2D01G383100 chrUn 89.655 87 9 0 2596 2682 325845306 325845220 1.100000e-20 111.0
43 TraesCS2D01G383100 chr3D 94.604 278 8 2 2759 3029 588866768 588867045 1.240000e-114 424.0
44 TraesCS2D01G383100 chr3D 93.633 267 9 4 816 1080 588867047 588866787 3.500000e-105 392.0
45 TraesCS2D01G383100 chr3D 88.785 321 19 14 2722 3029 500206889 500207205 9.810000e-101 377.0
46 TraesCS2D01G383100 chr3D 95.455 44 2 0 2595 2638 539485623 539485580 1.860000e-08 71.3
47 TraesCS2D01G383100 chr6D 95.720 257 9 2 818 1072 276587647 276587903 2.690000e-111 412.0
48 TraesCS2D01G383100 chr6D 91.844 282 14 4 2759 3033 415403202 415403481 5.860000e-103 385.0
49 TraesCS2D01G383100 chr6D 97.753 89 2 0 2591 2679 340107216 340107304 1.800000e-33 154.0
50 TraesCS2D01G383100 chr7D 93.165 278 12 2 2759 3029 160657021 160657298 5.820000e-108 401.0
51 TraesCS2D01G383100 chr4D 83.796 432 38 15 2076 2482 478731751 478732175 7.580000e-102 381.0
52 TraesCS2D01G383100 chr1B 81.859 441 45 17 2037 2452 635817006 635816576 4.630000e-89 339.0
53 TraesCS2D01G383100 chr5B 94.949 99 4 1 2663 2760 426519793 426519891 1.800000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G383100 chr2D 487359812 487363551 3739 False 6907.000000 6907 100.000000 1 3740 1 chr2D.!!$F3 3739
1 TraesCS2D01G383100 chr2D 18303136 18304633 1497 False 2043.000000 2043 91.370000 1077 2577 1 chr2D.!!$F1 1500
2 TraesCS2D01G383100 chr2D 503448228 503449850 1622 True 350.333333 507 93.766667 818 3029 3 chr2D.!!$R3 2211
3 TraesCS2D01G383100 chr2A 19446933 19448436 1503 False 2198.000000 2198 93.113000 1077 2577 1 chr2A.!!$F1 1500
4 TraesCS2D01G383100 chr2A 632498021 632501361 3340 False 276.200000 531 86.872200 1 3738 5 chr2A.!!$F3 3737
5 TraesCS2D01G383100 chr2A 632471222 632474010 2788 False 261.400000 603 84.382400 3 3738 5 chr2A.!!$F2 3735
6 TraesCS2D01G383100 chr2B 30429699 30431217 1518 False 1786.000000 1786 88.292000 1077 2577 1 chr2B.!!$F1 1500
7 TraesCS2D01G383100 chr2B 572111022 572112138 1116 False 552.000000 651 85.947500 1 3738 2 chr2B.!!$F3 3737
8 TraesCS2D01G383100 chr5A 119031159 119031925 766 False 630.000000 630 82.368000 1751 2487 1 chr5A.!!$F1 736
9 TraesCS2D01G383100 chr4B 334213670 334214436 766 True 625.000000 625 82.239000 1751 2487 1 chr4B.!!$R1 736
10 TraesCS2D01G383100 chr1D 44550 46588 2038 True 417.000000 444 93.648500 818 3029 2 chr1D.!!$R1 2211
11 TraesCS2D01G383100 chr5D 378328797 378332229 3432 True 457.500000 521 94.157500 818 3029 2 chr5D.!!$R2 2211
12 TraesCS2D01G383100 chr5D 378328795 378332233 3438 False 423.500000 460 92.021000 816 3032 2 chr5D.!!$F3 2216
13 TraesCS2D01G383100 chrUn 16337646 16338284 638 True 510.000000 510 81.193000 1078 1729 1 chrUn.!!$R1 651
14 TraesCS2D01G383100 chrUn 16378485 16379754 1269 False 279.500000 322 83.085000 1287 1950 2 chrUn.!!$F2 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 1451 0.029967 TGATGATCTCTCGCACTCGC 59.970 55.0 0.0 0.0 35.26 5.03 F
1792 7579 0.035458 GGAGTGTGACCCTGTTCCTG 59.965 60.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 7596 0.472471 TGACCCGCTCAGGTTTCTTT 59.528 50.0 0.00 0.0 41.42 2.52 R
3569 11715 0.108898 CTCTCTGGTGCGTCTCCAAG 60.109 60.0 3.03 4.2 34.35 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 32 8.080417 ACAGATTGACATTTCAAATGACAAGAG 58.920 33.333 25.16 20.04 45.01 2.85
31 34 8.295288 AGATTGACATTTCAAATGACAAGAGAC 58.705 33.333 25.16 17.89 45.01 3.36
32 35 6.940831 TGACATTTCAAATGACAAGAGACA 57.059 33.333 17.30 1.75 0.00 3.41
33 36 6.962686 TGACATTTCAAATGACAAGAGACAG 58.037 36.000 17.30 0.00 0.00 3.51
34 37 6.767423 TGACATTTCAAATGACAAGAGACAGA 59.233 34.615 17.30 0.00 0.00 3.41
35 38 7.446319 TGACATTTCAAATGACAAGAGACAGAT 59.554 33.333 17.30 0.00 0.00 2.90
36 39 7.814642 ACATTTCAAATGACAAGAGACAGATC 58.185 34.615 17.30 0.00 0.00 2.75
72 75 0.735978 CTCGCACACGCCAACATAGA 60.736 55.000 0.00 0.00 39.84 1.98
73 76 0.735978 TCGCACACGCCAACATAGAG 60.736 55.000 0.00 0.00 39.84 2.43
155 954 0.945813 TTGGCTTAAACAACGACGGG 59.054 50.000 0.00 0.00 0.00 5.28
259 1058 1.740380 CGCCATGTCGATCTGGAGTTT 60.740 52.381 17.65 0.00 34.24 2.66
269 1068 1.334160 TCTGGAGTTTAGGTGCGTCA 58.666 50.000 0.00 0.00 0.00 4.35
309 1116 7.042119 CCCACCATAAACAAAACAAAGTTGATC 60.042 37.037 0.00 0.00 0.00 2.92
345 1152 2.574955 GGTGTCCTGCTCGACCACT 61.575 63.158 1.95 0.00 31.35 4.00
346 1153 1.367840 GTGTCCTGCTCGACCACTT 59.632 57.895 1.95 0.00 31.35 3.16
347 1154 0.667792 GTGTCCTGCTCGACCACTTC 60.668 60.000 1.95 0.00 31.35 3.01
352 1159 4.452733 GCTCGACCACTTCCCCCG 62.453 72.222 0.00 0.00 0.00 5.73
353 1160 4.452733 CTCGACCACTTCCCCCGC 62.453 72.222 0.00 0.00 0.00 6.13
355 1162 4.760047 CGACCACTTCCCCCGCTG 62.760 72.222 0.00 0.00 0.00 5.18
356 1163 4.410400 GACCACTTCCCCCGCTGG 62.410 72.222 0.00 0.00 0.00 4.85
387 1194 3.752704 GCCCGTTGCACTTGGTAA 58.247 55.556 0.00 0.00 40.77 2.85
388 1195 1.284715 GCCCGTTGCACTTGGTAAC 59.715 57.895 0.00 0.00 40.77 2.50
389 1196 1.448922 GCCCGTTGCACTTGGTAACA 61.449 55.000 0.00 0.00 41.59 2.41
390 1197 2.755775 GCCCGTTGCACTTGGTAACAT 61.756 52.381 0.00 0.00 44.17 2.71
391 1198 4.579926 GCCCGTTGCACTTGGTAACATC 62.580 54.545 0.00 0.00 44.17 3.06
404 1211 5.733620 TGGTAACATCCTACGAGTTTTCT 57.266 39.130 0.00 0.00 46.17 2.52
405 1212 6.839124 TGGTAACATCCTACGAGTTTTCTA 57.161 37.500 0.00 0.00 46.17 2.10
406 1213 7.230849 TGGTAACATCCTACGAGTTTTCTAA 57.769 36.000 0.00 0.00 46.17 2.10
407 1214 7.844009 TGGTAACATCCTACGAGTTTTCTAAT 58.156 34.615 0.00 0.00 46.17 1.73
408 1215 7.762615 TGGTAACATCCTACGAGTTTTCTAATG 59.237 37.037 0.00 0.00 46.17 1.90
409 1216 6.663944 AACATCCTACGAGTTTTCTAATGC 57.336 37.500 0.00 0.00 0.00 3.56
410 1217 4.804139 ACATCCTACGAGTTTTCTAATGCG 59.196 41.667 0.00 0.00 0.00 4.73
411 1218 3.184541 TCCTACGAGTTTTCTAATGCGC 58.815 45.455 0.00 0.00 0.00 6.09
412 1219 3.119245 TCCTACGAGTTTTCTAATGCGCT 60.119 43.478 9.73 0.00 0.00 5.92
413 1220 3.000322 CCTACGAGTTTTCTAATGCGCTG 60.000 47.826 9.73 0.00 0.00 5.18
414 1221 1.128692 ACGAGTTTTCTAATGCGCTGC 59.871 47.619 9.73 0.00 0.00 5.25
415 1222 1.128507 CGAGTTTTCTAATGCGCTGCA 59.871 47.619 9.73 5.73 44.86 4.41
416 1223 2.509870 GAGTTTTCTAATGCGCTGCAC 58.490 47.619 9.73 0.00 43.04 4.57
417 1224 1.879380 AGTTTTCTAATGCGCTGCACA 59.121 42.857 9.73 0.00 43.04 4.57
418 1225 1.978782 GTTTTCTAATGCGCTGCACAC 59.021 47.619 9.73 0.00 43.04 3.82
419 1226 0.165727 TTTCTAATGCGCTGCACACG 59.834 50.000 9.73 0.03 43.04 4.49
420 1227 0.669012 TTCTAATGCGCTGCACACGA 60.669 50.000 9.73 0.67 43.04 4.35
421 1228 1.078201 TCTAATGCGCTGCACACGAG 61.078 55.000 9.73 0.00 43.04 4.18
422 1229 2.622722 CTAATGCGCTGCACACGAGC 62.623 60.000 9.73 0.90 43.04 5.03
429 1236 3.279116 TGCACACGAGCAGCCAAC 61.279 61.111 0.00 0.00 40.11 3.77
430 1237 3.279116 GCACACGAGCAGCCAACA 61.279 61.111 0.00 0.00 0.00 3.33
431 1238 2.941333 CACACGAGCAGCCAACAG 59.059 61.111 0.00 0.00 0.00 3.16
432 1239 1.595109 CACACGAGCAGCCAACAGA 60.595 57.895 0.00 0.00 0.00 3.41
433 1240 1.595382 ACACGAGCAGCCAACAGAC 60.595 57.895 0.00 0.00 0.00 3.51
434 1241 1.595109 CACGAGCAGCCAACAGACA 60.595 57.895 0.00 0.00 0.00 3.41
435 1242 1.301244 ACGAGCAGCCAACAGACAG 60.301 57.895 0.00 0.00 0.00 3.51
436 1243 2.031516 CGAGCAGCCAACAGACAGG 61.032 63.158 0.00 0.00 0.00 4.00
437 1244 1.072159 GAGCAGCCAACAGACAGGT 59.928 57.895 0.00 0.00 0.00 4.00
438 1245 1.228063 AGCAGCCAACAGACAGGTG 60.228 57.895 0.00 0.00 33.56 4.00
439 1246 1.227943 GCAGCCAACAGACAGGTGA 60.228 57.895 0.00 0.00 36.95 4.02
440 1247 1.233285 GCAGCCAACAGACAGGTGAG 61.233 60.000 0.00 0.00 36.95 3.51
441 1248 1.072159 AGCCAACAGACAGGTGAGC 59.928 57.895 0.00 0.00 36.95 4.26
442 1249 1.227943 GCCAACAGACAGGTGAGCA 60.228 57.895 0.00 0.00 36.95 4.26
443 1250 1.233285 GCCAACAGACAGGTGAGCAG 61.233 60.000 0.00 0.00 36.95 4.24
444 1251 0.604780 CCAACAGACAGGTGAGCAGG 60.605 60.000 0.00 0.00 36.95 4.85
445 1252 0.394192 CAACAGACAGGTGAGCAGGA 59.606 55.000 0.00 0.00 36.95 3.86
446 1253 1.002888 CAACAGACAGGTGAGCAGGAT 59.997 52.381 0.00 0.00 36.95 3.24
447 1254 0.901124 ACAGACAGGTGAGCAGGATC 59.099 55.000 0.00 0.00 0.00 3.36
448 1255 1.193323 CAGACAGGTGAGCAGGATCT 58.807 55.000 0.00 0.00 0.00 2.75
449 1256 2.291865 ACAGACAGGTGAGCAGGATCTA 60.292 50.000 0.00 0.00 0.00 1.98
450 1257 2.100584 CAGACAGGTGAGCAGGATCTAC 59.899 54.545 0.00 0.00 0.00 2.59
451 1258 1.410882 GACAGGTGAGCAGGATCTACC 59.589 57.143 0.00 0.00 39.35 3.18
452 1259 1.273267 ACAGGTGAGCAGGATCTACCA 60.273 52.381 0.00 0.00 42.04 3.25
453 1260 2.045524 CAGGTGAGCAGGATCTACCAT 58.954 52.381 0.00 0.00 42.04 3.55
454 1261 2.045524 AGGTGAGCAGGATCTACCATG 58.954 52.381 0.00 0.00 42.04 3.66
455 1262 1.071385 GGTGAGCAGGATCTACCATGG 59.929 57.143 11.19 11.19 42.04 3.66
456 1263 1.071385 GTGAGCAGGATCTACCATGGG 59.929 57.143 18.09 0.00 42.04 4.00
457 1264 0.036022 GAGCAGGATCTACCATGGGC 59.964 60.000 18.09 6.98 42.04 5.36
458 1265 1.302033 GCAGGATCTACCATGGGCG 60.302 63.158 18.09 6.44 42.04 6.13
459 1266 1.372683 CAGGATCTACCATGGGCGG 59.627 63.158 18.09 5.61 42.04 6.13
460 1267 1.074471 AGGATCTACCATGGGCGGT 60.074 57.895 18.09 1.75 43.46 5.68
461 1268 1.122019 AGGATCTACCATGGGCGGTC 61.122 60.000 18.09 11.76 40.67 4.79
462 1269 1.006102 GATCTACCATGGGCGGTCG 60.006 63.158 18.09 0.00 40.67 4.79
463 1270 1.456892 ATCTACCATGGGCGGTCGA 60.457 57.895 18.09 3.15 40.67 4.20
464 1271 1.464376 ATCTACCATGGGCGGTCGAG 61.464 60.000 18.09 1.58 40.67 4.04
465 1272 2.043752 TACCATGGGCGGTCGAGA 60.044 61.111 18.09 0.00 40.67 4.04
466 1273 2.076622 CTACCATGGGCGGTCGAGAG 62.077 65.000 18.09 0.00 40.67 3.20
467 1274 4.899239 CCATGGGCGGTCGAGAGC 62.899 72.222 2.85 3.64 0.00 4.09
485 1292 4.170723 CGAACTCGGGAGCTTGTC 57.829 61.111 0.00 0.00 35.37 3.18
486 1293 1.801913 CGAACTCGGGAGCTTGTCG 60.802 63.158 0.00 0.00 35.37 4.35
487 1294 1.585006 GAACTCGGGAGCTTGTCGA 59.415 57.895 0.00 6.77 0.00 4.20
488 1295 0.733223 GAACTCGGGAGCTTGTCGAC 60.733 60.000 9.11 9.11 0.00 4.20
489 1296 1.179814 AACTCGGGAGCTTGTCGACT 61.180 55.000 17.92 0.00 0.00 4.18
490 1297 1.179814 ACTCGGGAGCTTGTCGACTT 61.180 55.000 17.92 0.00 0.00 3.01
491 1298 0.734253 CTCGGGAGCTTGTCGACTTG 60.734 60.000 17.92 10.33 0.00 3.16
492 1299 1.006102 CGGGAGCTTGTCGACTTGT 60.006 57.895 17.92 0.00 0.00 3.16
493 1300 1.009389 CGGGAGCTTGTCGACTTGTC 61.009 60.000 17.92 8.03 0.00 3.18
494 1301 0.033504 GGGAGCTTGTCGACTTGTCA 59.966 55.000 17.92 0.00 0.00 3.58
495 1302 1.423395 GGAGCTTGTCGACTTGTCAG 58.577 55.000 17.92 6.07 0.00 3.51
496 1303 0.787183 GAGCTTGTCGACTTGTCAGC 59.213 55.000 17.92 14.94 0.00 4.26
497 1304 0.390860 AGCTTGTCGACTTGTCAGCT 59.609 50.000 17.92 16.77 0.00 4.24
498 1305 0.510359 GCTTGTCGACTTGTCAGCTG 59.490 55.000 17.92 7.63 0.00 4.24
499 1306 0.510359 CTTGTCGACTTGTCAGCTGC 59.490 55.000 17.92 4.92 0.00 5.25
500 1307 0.880278 TTGTCGACTTGTCAGCTGCC 60.880 55.000 17.92 0.00 0.00 4.85
501 1308 2.049156 TCGACTTGTCAGCTGCCG 60.049 61.111 9.47 5.57 0.00 5.69
502 1309 3.782244 CGACTTGTCAGCTGCCGC 61.782 66.667 9.47 2.18 0.00 6.53
503 1310 2.666190 GACTTGTCAGCTGCCGCA 60.666 61.111 9.47 5.07 39.10 5.69
504 1311 2.033141 ACTTGTCAGCTGCCGCAT 59.967 55.556 9.47 0.00 39.10 4.73
505 1312 2.249557 GACTTGTCAGCTGCCGCATG 62.250 60.000 9.47 11.93 39.10 4.06
506 1313 3.678717 CTTGTCAGCTGCCGCATGC 62.679 63.158 9.47 7.91 39.10 4.06
515 1322 3.913573 GCCGCATGCACTACGACG 61.914 66.667 19.57 0.00 40.77 5.12
516 1323 3.254654 CCGCATGCACTACGACGG 61.255 66.667 19.57 3.89 0.00 4.79
517 1324 2.202557 CGCATGCACTACGACGGA 60.203 61.111 19.57 0.00 0.00 4.69
518 1325 2.224217 CGCATGCACTACGACGGAG 61.224 63.158 19.57 5.27 0.00 4.63
542 1349 3.406361 CACGACACGGCAGCACTC 61.406 66.667 0.00 0.00 0.00 3.51
543 1350 4.664677 ACGACACGGCAGCACTCC 62.665 66.667 0.00 0.00 0.00 3.85
552 1359 4.421515 CAGCACTCCCCTGCCCTG 62.422 72.222 0.00 0.00 37.96 4.45
591 1398 2.410060 CGTATACGCCGGCTGTGA 59.590 61.111 26.68 13.29 0.00 3.58
592 1399 1.942712 CGTATACGCCGGCTGTGAC 60.943 63.158 26.68 21.60 0.00 3.67
593 1400 1.436336 GTATACGCCGGCTGTGACT 59.564 57.895 26.68 14.53 0.00 3.41
594 1401 0.664761 GTATACGCCGGCTGTGACTA 59.335 55.000 26.68 13.64 0.00 2.59
595 1402 0.664761 TATACGCCGGCTGTGACTAC 59.335 55.000 26.68 0.00 0.00 2.73
596 1403 1.035932 ATACGCCGGCTGTGACTACT 61.036 55.000 26.68 2.89 0.00 2.57
597 1404 1.929806 TACGCCGGCTGTGACTACTG 61.930 60.000 26.68 7.01 0.00 2.74
598 1405 2.125512 GCCGGCTGTGACTACTGG 60.126 66.667 22.15 0.00 0.00 4.00
599 1406 2.579201 CCGGCTGTGACTACTGGG 59.421 66.667 0.00 0.00 0.00 4.45
600 1407 2.125512 CGGCTGTGACTACTGGGC 60.126 66.667 0.00 0.00 0.00 5.36
601 1408 2.650116 CGGCTGTGACTACTGGGCT 61.650 63.158 0.00 0.00 0.00 5.19
602 1409 1.320344 CGGCTGTGACTACTGGGCTA 61.320 60.000 0.00 0.00 0.00 3.93
603 1410 0.902531 GGCTGTGACTACTGGGCTAA 59.097 55.000 0.00 0.00 0.00 3.09
604 1411 1.486726 GGCTGTGACTACTGGGCTAAT 59.513 52.381 0.00 0.00 0.00 1.73
605 1412 2.555199 GCTGTGACTACTGGGCTAATG 58.445 52.381 0.00 0.00 0.00 1.90
606 1413 2.743183 GCTGTGACTACTGGGCTAATGG 60.743 54.545 0.00 0.00 0.00 3.16
607 1414 2.501723 CTGTGACTACTGGGCTAATGGT 59.498 50.000 0.00 0.00 0.00 3.55
608 1415 3.704566 CTGTGACTACTGGGCTAATGGTA 59.295 47.826 0.00 0.00 0.00 3.25
609 1416 3.704566 TGTGACTACTGGGCTAATGGTAG 59.295 47.826 0.00 0.00 38.01 3.18
618 1425 2.420058 GCTAATGGTAGCCAGTGGTT 57.580 50.000 11.74 7.53 46.10 3.67
619 1426 2.289565 GCTAATGGTAGCCAGTGGTTC 58.710 52.381 11.74 1.50 46.10 3.62
620 1427 2.550978 CTAATGGTAGCCAGTGGTTCG 58.449 52.381 11.74 0.00 36.75 3.95
621 1428 0.676782 AATGGTAGCCAGTGGTTCGC 60.677 55.000 11.74 1.44 36.75 4.70
622 1429 1.553690 ATGGTAGCCAGTGGTTCGCT 61.554 55.000 11.74 3.83 36.75 4.93
623 1430 0.901114 TGGTAGCCAGTGGTTCGCTA 60.901 55.000 11.74 2.76 34.03 4.26
624 1431 0.248289 GGTAGCCAGTGGTTCGCTAA 59.752 55.000 11.74 0.00 36.88 3.09
625 1432 1.134491 GGTAGCCAGTGGTTCGCTAAT 60.134 52.381 11.74 0.00 36.88 1.73
626 1433 1.933853 GTAGCCAGTGGTTCGCTAATG 59.066 52.381 11.74 0.00 36.88 1.90
627 1434 0.613260 AGCCAGTGGTTCGCTAATGA 59.387 50.000 11.74 0.00 0.00 2.57
628 1435 1.210478 AGCCAGTGGTTCGCTAATGAT 59.790 47.619 11.74 0.00 0.00 2.45
629 1436 1.331756 GCCAGTGGTTCGCTAATGATG 59.668 52.381 11.74 0.00 0.00 3.07
630 1437 2.905075 CCAGTGGTTCGCTAATGATGA 58.095 47.619 0.00 0.00 0.00 2.92
631 1438 3.470709 CCAGTGGTTCGCTAATGATGAT 58.529 45.455 0.00 0.00 0.00 2.45
632 1439 3.496130 CCAGTGGTTCGCTAATGATGATC 59.504 47.826 0.00 0.00 0.00 2.92
633 1440 4.375272 CAGTGGTTCGCTAATGATGATCT 58.625 43.478 0.00 0.00 0.00 2.75
634 1441 4.447054 CAGTGGTTCGCTAATGATGATCTC 59.553 45.833 0.00 0.00 0.00 2.75
635 1442 4.343526 AGTGGTTCGCTAATGATGATCTCT 59.656 41.667 0.00 0.00 0.00 3.10
636 1443 4.683781 GTGGTTCGCTAATGATGATCTCTC 59.316 45.833 0.00 0.00 0.00 3.20
637 1444 3.917380 GGTTCGCTAATGATGATCTCTCG 59.083 47.826 0.00 0.00 0.00 4.04
638 1445 3.208915 TCGCTAATGATGATCTCTCGC 57.791 47.619 0.00 0.00 0.00 5.03
639 1446 2.554032 TCGCTAATGATGATCTCTCGCA 59.446 45.455 0.00 0.00 0.00 5.10
640 1447 2.660715 CGCTAATGATGATCTCTCGCAC 59.339 50.000 0.00 0.00 0.00 5.34
641 1448 3.611293 CGCTAATGATGATCTCTCGCACT 60.611 47.826 0.00 0.00 0.00 4.40
642 1449 3.919804 GCTAATGATGATCTCTCGCACTC 59.080 47.826 0.00 0.00 0.00 3.51
643 1450 2.702898 ATGATGATCTCTCGCACTCG 57.297 50.000 0.00 0.00 0.00 4.18
644 1451 0.029967 TGATGATCTCTCGCACTCGC 59.970 55.000 0.00 0.00 35.26 5.03
667 1474 2.985847 GCGGCTCCCACTTGCTTT 60.986 61.111 0.00 0.00 0.00 3.51
668 1475 2.956987 CGGCTCCCACTTGCTTTG 59.043 61.111 0.00 0.00 0.00 2.77
669 1476 2.653115 GGCTCCCACTTGCTTTGC 59.347 61.111 0.00 0.00 0.00 3.68
670 1477 2.653115 GCTCCCACTTGCTTTGCC 59.347 61.111 0.00 0.00 0.00 4.52
671 1478 2.956987 CTCCCACTTGCTTTGCCG 59.043 61.111 0.00 0.00 0.00 5.69
672 1479 1.600636 CTCCCACTTGCTTTGCCGA 60.601 57.895 0.00 0.00 0.00 5.54
673 1480 0.962356 CTCCCACTTGCTTTGCCGAT 60.962 55.000 0.00 0.00 0.00 4.18
674 1481 1.213537 CCCACTTGCTTTGCCGATG 59.786 57.895 0.00 0.00 0.00 3.84
675 1482 1.213537 CCACTTGCTTTGCCGATGG 59.786 57.895 0.00 0.00 0.00 3.51
676 1483 1.526575 CCACTTGCTTTGCCGATGGT 61.527 55.000 0.00 0.00 0.00 3.55
677 1484 0.387622 CACTTGCTTTGCCGATGGTG 60.388 55.000 0.00 0.00 0.00 4.17
678 1485 1.444895 CTTGCTTTGCCGATGGTGC 60.445 57.895 0.00 0.00 0.00 5.01
679 1486 2.144833 CTTGCTTTGCCGATGGTGCA 62.145 55.000 0.00 0.00 36.84 4.57
680 1487 2.126346 GCTTTGCCGATGGTGCAC 60.126 61.111 8.80 8.80 38.72 4.57
681 1488 2.568090 CTTTGCCGATGGTGCACC 59.432 61.111 29.67 29.67 38.72 5.01
682 1489 3.326889 CTTTGCCGATGGTGCACCG 62.327 63.158 30.07 18.23 38.72 4.94
703 1510 4.796231 CGGGAGAGAACGGCCGTG 62.796 72.222 34.95 13.15 0.00 4.94
732 1539 2.096596 GCTAGTGCTACTCCGACGT 58.903 57.895 0.00 0.00 36.03 4.34
733 1540 1.293924 GCTAGTGCTACTCCGACGTA 58.706 55.000 0.00 0.00 36.03 3.57
734 1541 1.004079 GCTAGTGCTACTCCGACGTAC 60.004 57.143 0.00 0.00 36.03 3.67
735 1542 2.548875 CTAGTGCTACTCCGACGTACT 58.451 52.381 0.00 0.00 0.00 2.73
736 1543 1.367659 AGTGCTACTCCGACGTACTC 58.632 55.000 0.00 0.00 0.00 2.59
737 1544 1.066286 AGTGCTACTCCGACGTACTCT 60.066 52.381 0.00 0.00 0.00 3.24
738 1545 2.167281 AGTGCTACTCCGACGTACTCTA 59.833 50.000 0.00 0.00 0.00 2.43
739 1546 2.283884 GTGCTACTCCGACGTACTCTAC 59.716 54.545 0.00 0.00 0.00 2.59
740 1547 2.167281 TGCTACTCCGACGTACTCTACT 59.833 50.000 0.00 0.00 0.00 2.57
741 1548 2.794350 GCTACTCCGACGTACTCTACTC 59.206 54.545 0.00 0.00 0.00 2.59
742 1549 3.490761 GCTACTCCGACGTACTCTACTCT 60.491 52.174 0.00 0.00 0.00 3.24
743 1550 2.891112 ACTCCGACGTACTCTACTCTG 58.109 52.381 0.00 0.00 0.00 3.35
744 1551 1.593933 CTCCGACGTACTCTACTCTGC 59.406 57.143 0.00 0.00 0.00 4.26
745 1552 1.206610 TCCGACGTACTCTACTCTGCT 59.793 52.381 0.00 0.00 0.00 4.24
746 1553 1.593933 CCGACGTACTCTACTCTGCTC 59.406 57.143 0.00 0.00 0.00 4.26
747 1554 1.255859 CGACGTACTCTACTCTGCTCG 59.744 57.143 0.00 0.00 0.00 5.03
748 1555 1.004715 GACGTACTCTACTCTGCTCGC 60.005 57.143 0.00 0.00 0.00 5.03
749 1556 1.292061 CGTACTCTACTCTGCTCGCT 58.708 55.000 0.00 0.00 0.00 4.93
750 1557 1.004398 CGTACTCTACTCTGCTCGCTG 60.004 57.143 0.00 0.00 0.00 5.18
751 1558 1.018148 TACTCTACTCTGCTCGCTGC 58.982 55.000 0.00 0.00 43.25 5.25
752 1559 1.065600 CTCTACTCTGCTCGCTGCC 59.934 63.158 0.00 0.00 42.00 4.85
753 1560 1.379176 TCTACTCTGCTCGCTGCCT 60.379 57.895 0.00 0.00 42.00 4.75
754 1561 1.226916 CTACTCTGCTCGCTGCCTG 60.227 63.158 0.00 0.00 42.00 4.85
755 1562 3.362399 TACTCTGCTCGCTGCCTGC 62.362 63.158 4.83 4.83 42.00 4.85
765 1572 4.711949 CTGCCTGCCTCGGTTGCT 62.712 66.667 0.00 0.00 0.00 3.91
769 1576 4.711949 CTGCCTCGGTTGCTGCCT 62.712 66.667 0.00 0.00 0.00 4.75
770 1577 4.704833 TGCCTCGGTTGCTGCCTC 62.705 66.667 0.00 0.00 0.00 4.70
772 1579 4.785453 CCTCGGTTGCTGCCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
775 1582 4.077184 CGGTTGCTGCCTCCCGTA 62.077 66.667 11.94 0.00 35.78 4.02
776 1583 2.125106 GGTTGCTGCCTCCCGTAG 60.125 66.667 0.00 0.00 0.00 3.51
777 1584 2.663196 GTTGCTGCCTCCCGTAGT 59.337 61.111 0.00 0.00 0.00 2.73
778 1585 1.448013 GTTGCTGCCTCCCGTAGTC 60.448 63.158 0.00 0.00 0.00 2.59
779 1586 2.656069 TTGCTGCCTCCCGTAGTCC 61.656 63.158 0.00 0.00 0.00 3.85
780 1587 3.851128 GCTGCCTCCCGTAGTCCC 61.851 72.222 0.00 0.00 0.00 4.46
781 1588 3.528370 CTGCCTCCCGTAGTCCCG 61.528 72.222 0.00 0.00 0.00 5.14
788 1595 3.834799 CCGTAGTCCCGCCCACTC 61.835 72.222 0.00 0.00 0.00 3.51
789 1596 3.834799 CGTAGTCCCGCCCACTCC 61.835 72.222 0.00 0.00 0.00 3.85
790 1597 3.834799 GTAGTCCCGCCCACTCCG 61.835 72.222 0.00 0.00 0.00 4.63
791 1598 4.371417 TAGTCCCGCCCACTCCGT 62.371 66.667 0.00 0.00 0.00 4.69
797 1604 4.016706 CGCCCACTCCGTCCCTTT 62.017 66.667 0.00 0.00 0.00 3.11
798 1605 2.046217 GCCCACTCCGTCCCTTTC 60.046 66.667 0.00 0.00 0.00 2.62
799 1606 2.593956 GCCCACTCCGTCCCTTTCT 61.594 63.158 0.00 0.00 0.00 2.52
800 1607 1.262640 GCCCACTCCGTCCCTTTCTA 61.263 60.000 0.00 0.00 0.00 2.10
801 1608 0.535797 CCCACTCCGTCCCTTTCTAC 59.464 60.000 0.00 0.00 0.00 2.59
802 1609 0.535797 CCACTCCGTCCCTTTCTACC 59.464 60.000 0.00 0.00 0.00 3.18
803 1610 0.172803 CACTCCGTCCCTTTCTACCG 59.827 60.000 0.00 0.00 0.00 4.02
804 1611 0.038744 ACTCCGTCCCTTTCTACCGA 59.961 55.000 0.00 0.00 0.00 4.69
805 1612 0.455005 CTCCGTCCCTTTCTACCGAC 59.545 60.000 0.00 0.00 0.00 4.79
806 1613 0.967380 TCCGTCCCTTTCTACCGACC 60.967 60.000 0.00 0.00 0.00 4.79
807 1614 0.969409 CCGTCCCTTTCTACCGACCT 60.969 60.000 0.00 0.00 0.00 3.85
808 1615 0.455005 CGTCCCTTTCTACCGACCTC 59.545 60.000 0.00 0.00 0.00 3.85
809 1616 0.822811 GTCCCTTTCTACCGACCTCC 59.177 60.000 0.00 0.00 0.00 4.30
810 1617 0.325016 TCCCTTTCTACCGACCTCCC 60.325 60.000 0.00 0.00 0.00 4.30
811 1618 1.673808 CCCTTTCTACCGACCTCCCG 61.674 65.000 0.00 0.00 0.00 5.14
812 1619 1.141234 CTTTCTACCGACCTCCCGC 59.859 63.158 0.00 0.00 0.00 6.13
813 1620 1.304713 TTTCTACCGACCTCCCGCT 60.305 57.895 0.00 0.00 0.00 5.52
814 1621 1.318158 TTTCTACCGACCTCCCGCTC 61.318 60.000 0.00 0.00 0.00 5.03
837 1644 4.876107 CCCGAGTTAATTGCACAGAAGTAT 59.124 41.667 0.00 0.00 0.00 2.12
840 1647 6.258727 CCGAGTTAATTGCACAGAAGTATCAT 59.741 38.462 0.00 0.00 0.00 2.45
886 1693 7.450124 TTGGTACCACGATTGCTAATTTTTA 57.550 32.000 16.04 0.00 0.00 1.52
894 1701 6.740905 CACGATTGCTAATTTTTACGTGTCAT 59.259 34.615 0.00 0.00 42.67 3.06
901 1708 8.516234 TGCTAATTTTTACGTGTCATTACCAAT 58.484 29.630 0.00 0.00 0.00 3.16
937 1744 6.398234 TTTTGCAAATAGGTCTAAACTGCA 57.602 33.333 13.65 7.48 36.60 4.41
1129 2019 1.153823 GCCTACGCGCTCTTCTTCA 60.154 57.895 5.73 0.00 0.00 3.02
1396 5551 3.509137 TTCGTGGGTGAGGTGCGTC 62.509 63.158 0.00 0.00 0.00 5.19
1498 5879 2.343758 TGCCGTTGCAGAGTCTCC 59.656 61.111 0.00 0.00 44.23 3.71
1499 5880 2.811317 GCCGTTGCAGAGTCTCCG 60.811 66.667 0.00 0.00 37.47 4.63
1602 6035 3.902881 AATGTGGTCTGTGAGGATCTC 57.097 47.619 0.00 0.00 34.92 2.75
1606 6039 2.093764 GTGGTCTGTGAGGATCTCAAGG 60.094 54.545 0.00 0.00 42.46 3.61
1607 6040 1.134551 GGTCTGTGAGGATCTCAAGGC 60.135 57.143 0.00 2.23 42.46 4.35
1609 6042 2.235898 GTCTGTGAGGATCTCAAGGCTT 59.764 50.000 0.00 0.00 42.46 4.35
1752 7539 5.420739 AGAGAGAAAGGGATTCAGTAGTGAC 59.579 44.000 0.00 0.00 40.72 3.67
1792 7579 0.035458 GGAGTGTGACCCTGTTCCTG 59.965 60.000 0.00 0.00 0.00 3.86
1809 7596 0.607217 CTGTGTCAGCAATGGAGGCA 60.607 55.000 0.00 0.00 0.00 4.75
1855 7643 3.935203 GCCACATTCTTCGATTTCTCAGA 59.065 43.478 0.00 0.00 0.00 3.27
1888 7676 2.577563 TGGGAATCTGGCAATCTGAAGA 59.422 45.455 0.00 0.00 0.00 2.87
1957 7835 2.450476 AGGAATCATTCAAGGGTGTGC 58.550 47.619 0.00 0.00 0.00 4.57
2008 7893 1.333619 GCGACCAAAAGCAGAGTCAAA 59.666 47.619 0.00 0.00 0.00 2.69
2053 7946 1.000274 ACCGAAAACAATTGCCAGAGC 60.000 47.619 5.05 0.00 40.48 4.09
2155 8425 0.673985 CGCCTCCATTATCGGTGAGA 59.326 55.000 0.00 0.00 0.00 3.27
2927 10765 8.876790 GTTTATACGCAGTTTAGACCTATTTGT 58.123 33.333 0.00 0.00 37.78 2.83
3029 11012 5.001232 TGGTACTTCTGTGCAATTAACTCC 58.999 41.667 0.00 0.00 0.00 3.85
3032 11015 2.107950 TCTGTGCAATTAACTCCCCG 57.892 50.000 0.00 0.00 0.00 5.73
3034 11017 0.037590 TGTGCAATTAACTCCCCGCT 59.962 50.000 0.00 0.00 0.00 5.52
3035 11018 0.733150 GTGCAATTAACTCCCCGCTC 59.267 55.000 0.00 0.00 0.00 5.03
3036 11019 0.393808 TGCAATTAACTCCCCGCTCC 60.394 55.000 0.00 0.00 0.00 4.70
3070 11124 2.749865 CCCGGTTGTACGCATGCAG 61.750 63.158 19.57 12.98 0.00 4.41
3134 11196 3.194116 TGTAATCTTTCTACCGAGCCGTT 59.806 43.478 0.00 0.00 0.00 4.44
3152 11220 1.194772 GTTGCTGTAGGCTTGAACGTC 59.805 52.381 0.00 0.00 42.39 4.34
3176 11279 2.639751 CGTGCTTTCTACAACTTGTGC 58.360 47.619 4.57 0.00 0.00 4.57
3219 11336 3.181520 CGACGTGAAAAATCACCTCATCC 60.182 47.826 0.00 0.00 37.33 3.51
3266 11389 1.953686 TCCAACTGGCAAAAGTACAGC 59.046 47.619 0.00 0.00 35.70 4.40
3288 11411 3.250744 GACGTTTCGGTTCATCTCATCA 58.749 45.455 0.00 0.00 0.00 3.07
3312 11435 3.195002 CGCGGTGCATTCGGACAT 61.195 61.111 12.98 0.00 34.61 3.06
3340 11464 1.344837 CATGTCCGACGTGCATTCG 59.655 57.895 7.80 12.46 36.20 3.34
3374 11511 0.179161 CTCTCTACACGCACCGGAAG 60.179 60.000 9.46 0.15 0.00 3.46
3394 11531 2.183300 GCCGATACGTGTGCCTCA 59.817 61.111 0.00 0.00 0.00 3.86
3472 11616 1.066358 ACGGAGCACTAGGTAAAAGGC 60.066 52.381 0.00 0.00 0.00 4.35
3476 11620 1.207329 AGCACTAGGTAAAAGGCGAGG 59.793 52.381 0.00 0.00 0.00 4.63
3650 11800 4.814294 CCACGCCCGGAGTACTGC 62.814 72.222 0.73 0.73 0.00 4.40
3738 11898 2.174349 GTTTCTGGCAGCGCTTCG 59.826 61.111 7.50 0.00 0.00 3.79
3739 11899 3.049674 TTTCTGGCAGCGCTTCGG 61.050 61.111 7.50 8.76 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 35 2.034053 GCGTTCTCCTTCAGATCGATCT 59.966 50.000 22.32 22.32 44.14 2.75
33 36 2.034053 AGCGTTCTCCTTCAGATCGATC 59.966 50.000 17.91 17.91 44.14 3.69
34 37 2.028130 AGCGTTCTCCTTCAGATCGAT 58.972 47.619 0.00 0.00 44.14 3.59
35 38 1.402259 GAGCGTTCTCCTTCAGATCGA 59.598 52.381 6.32 0.00 44.14 3.59
36 39 1.833860 GAGCGTTCTCCTTCAGATCG 58.166 55.000 0.00 0.00 44.20 3.69
44 47 2.049063 GTGTGCGAGCGTTCTCCT 60.049 61.111 0.00 0.00 35.94 3.69
155 954 0.034896 TCTTTTCTGCCGAGGTCACC 59.965 55.000 0.00 0.00 0.00 4.02
259 1058 2.900273 GGGCAGATGACGCACCTA 59.100 61.111 0.00 0.00 0.00 3.08
298 1097 6.069440 TGGAAGGATGGATAGATCAACTTTGT 60.069 38.462 0.00 0.00 0.00 2.83
309 1116 2.105477 CACCTGGTGGAAGGATGGATAG 59.895 54.545 19.23 0.00 40.02 2.08
370 1177 1.284715 GTTACCAAGTGCAACGGGC 59.715 57.895 0.00 0.00 45.86 6.13
371 1178 1.199097 GATGTTACCAAGTGCAACGGG 59.801 52.381 0.00 0.00 45.86 5.28
372 1179 1.199097 GGATGTTACCAAGTGCAACGG 59.801 52.381 0.00 0.00 45.86 4.44
373 1180 2.151202 AGGATGTTACCAAGTGCAACG 58.849 47.619 0.00 0.00 45.86 4.10
374 1181 3.124636 CGTAGGATGTTACCAAGTGCAAC 59.875 47.826 0.00 0.00 0.00 4.17
375 1182 3.007074 TCGTAGGATGTTACCAAGTGCAA 59.993 43.478 0.00 0.00 0.00 4.08
376 1183 2.563620 TCGTAGGATGTTACCAAGTGCA 59.436 45.455 0.00 0.00 0.00 4.57
377 1184 3.187700 CTCGTAGGATGTTACCAAGTGC 58.812 50.000 0.00 0.00 0.00 4.40
378 1185 4.451629 ACTCGTAGGATGTTACCAAGTG 57.548 45.455 0.00 0.00 0.00 3.16
379 1186 5.479124 AAACTCGTAGGATGTTACCAAGT 57.521 39.130 0.00 0.00 0.00 3.16
380 1187 6.164176 AGAAAACTCGTAGGATGTTACCAAG 58.836 40.000 0.00 0.00 0.00 3.61
381 1188 6.105397 AGAAAACTCGTAGGATGTTACCAA 57.895 37.500 0.00 0.00 0.00 3.67
382 1189 5.733620 AGAAAACTCGTAGGATGTTACCA 57.266 39.130 0.00 0.00 0.00 3.25
383 1190 7.254353 GCATTAGAAAACTCGTAGGATGTTACC 60.254 40.741 0.00 0.00 0.00 2.85
384 1191 7.514747 CGCATTAGAAAACTCGTAGGATGTTAC 60.515 40.741 0.00 0.00 0.00 2.50
385 1192 6.474427 CGCATTAGAAAACTCGTAGGATGTTA 59.526 38.462 0.00 0.00 0.00 2.41
386 1193 5.291128 CGCATTAGAAAACTCGTAGGATGTT 59.709 40.000 0.00 0.00 0.00 2.71
387 1194 4.804139 CGCATTAGAAAACTCGTAGGATGT 59.196 41.667 0.00 0.00 0.00 3.06
388 1195 4.318121 GCGCATTAGAAAACTCGTAGGATG 60.318 45.833 0.30 0.00 0.00 3.51
389 1196 3.802685 GCGCATTAGAAAACTCGTAGGAT 59.197 43.478 0.30 0.00 0.00 3.24
390 1197 3.119245 AGCGCATTAGAAAACTCGTAGGA 60.119 43.478 11.47 0.00 0.00 2.94
391 1198 3.000322 CAGCGCATTAGAAAACTCGTAGG 60.000 47.826 11.47 0.00 0.00 3.18
392 1199 3.542291 GCAGCGCATTAGAAAACTCGTAG 60.542 47.826 11.47 0.00 0.00 3.51
393 1200 2.347452 GCAGCGCATTAGAAAACTCGTA 59.653 45.455 11.47 0.00 0.00 3.43
394 1201 1.128692 GCAGCGCATTAGAAAACTCGT 59.871 47.619 11.47 0.00 0.00 4.18
395 1202 1.128507 TGCAGCGCATTAGAAAACTCG 59.871 47.619 11.47 0.00 31.71 4.18
396 1203 2.095768 TGTGCAGCGCATTAGAAAACTC 60.096 45.455 11.47 0.00 41.91 3.01
397 1204 1.879380 TGTGCAGCGCATTAGAAAACT 59.121 42.857 11.47 0.00 41.91 2.66
398 1205 1.978782 GTGTGCAGCGCATTAGAAAAC 59.021 47.619 12.82 0.00 41.91 2.43
399 1206 1.399599 CGTGTGCAGCGCATTAGAAAA 60.400 47.619 12.82 0.00 41.91 2.29
400 1207 0.165727 CGTGTGCAGCGCATTAGAAA 59.834 50.000 12.82 0.00 41.91 2.52
401 1208 0.669012 TCGTGTGCAGCGCATTAGAA 60.669 50.000 12.82 0.00 41.91 2.10
402 1209 1.078201 CTCGTGTGCAGCGCATTAGA 61.078 55.000 12.82 11.14 41.91 2.10
403 1210 1.346197 CTCGTGTGCAGCGCATTAG 59.654 57.895 12.82 8.89 41.91 1.73
404 1211 2.739704 GCTCGTGTGCAGCGCATTA 61.740 57.895 12.82 2.43 41.91 1.90
405 1212 4.093952 GCTCGTGTGCAGCGCATT 62.094 61.111 12.82 0.00 41.91 3.56
412 1219 3.279116 GTTGGCTGCTCGTGTGCA 61.279 61.111 0.00 0.00 41.05 4.57
413 1220 3.245948 CTGTTGGCTGCTCGTGTGC 62.246 63.158 0.00 0.00 0.00 4.57
414 1221 1.595109 TCTGTTGGCTGCTCGTGTG 60.595 57.895 0.00 0.00 0.00 3.82
415 1222 1.595382 GTCTGTTGGCTGCTCGTGT 60.595 57.895 0.00 0.00 0.00 4.49
416 1223 1.563435 CTGTCTGTTGGCTGCTCGTG 61.563 60.000 0.00 0.00 0.00 4.35
417 1224 1.301244 CTGTCTGTTGGCTGCTCGT 60.301 57.895 0.00 0.00 0.00 4.18
418 1225 2.031516 CCTGTCTGTTGGCTGCTCG 61.032 63.158 0.00 0.00 0.00 5.03
419 1226 1.072159 ACCTGTCTGTTGGCTGCTC 59.928 57.895 0.00 0.00 0.00 4.26
420 1227 1.228063 CACCTGTCTGTTGGCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
421 1228 1.227943 TCACCTGTCTGTTGGCTGC 60.228 57.895 0.00 0.00 0.00 5.25
422 1229 1.233285 GCTCACCTGTCTGTTGGCTG 61.233 60.000 0.00 0.00 0.00 4.85
423 1230 1.072159 GCTCACCTGTCTGTTGGCT 59.928 57.895 0.00 0.00 0.00 4.75
424 1231 1.227943 TGCTCACCTGTCTGTTGGC 60.228 57.895 0.00 0.00 0.00 4.52
425 1232 0.604780 CCTGCTCACCTGTCTGTTGG 60.605 60.000 0.00 0.00 0.00 3.77
426 1233 0.394192 TCCTGCTCACCTGTCTGTTG 59.606 55.000 0.00 0.00 0.00 3.33
427 1234 1.277557 GATCCTGCTCACCTGTCTGTT 59.722 52.381 0.00 0.00 0.00 3.16
428 1235 0.901124 GATCCTGCTCACCTGTCTGT 59.099 55.000 0.00 0.00 0.00 3.41
429 1236 1.193323 AGATCCTGCTCACCTGTCTG 58.807 55.000 0.00 0.00 0.00 3.51
430 1237 2.383855 GTAGATCCTGCTCACCTGTCT 58.616 52.381 0.00 0.00 0.00 3.41
431 1238 1.410882 GGTAGATCCTGCTCACCTGTC 59.589 57.143 0.00 0.00 0.00 3.51
432 1239 1.273267 TGGTAGATCCTGCTCACCTGT 60.273 52.381 0.00 0.00 37.07 4.00
433 1240 1.489481 TGGTAGATCCTGCTCACCTG 58.511 55.000 0.00 0.00 37.07 4.00
434 1241 2.045524 CATGGTAGATCCTGCTCACCT 58.954 52.381 0.00 0.00 37.07 4.00
435 1242 1.071385 CCATGGTAGATCCTGCTCACC 59.929 57.143 2.57 0.00 37.07 4.02
436 1243 1.071385 CCCATGGTAGATCCTGCTCAC 59.929 57.143 11.73 0.00 37.07 3.51
437 1244 1.427809 CCCATGGTAGATCCTGCTCA 58.572 55.000 11.73 0.00 37.07 4.26
438 1245 0.036022 GCCCATGGTAGATCCTGCTC 59.964 60.000 11.73 0.00 37.07 4.26
439 1246 1.762522 CGCCCATGGTAGATCCTGCT 61.763 60.000 11.73 0.00 37.07 4.24
440 1247 1.302033 CGCCCATGGTAGATCCTGC 60.302 63.158 11.73 3.00 37.07 4.85
441 1248 1.372683 CCGCCCATGGTAGATCCTG 59.627 63.158 11.73 0.00 37.07 3.86
442 1249 1.074471 ACCGCCCATGGTAGATCCT 60.074 57.895 11.73 0.00 41.55 3.24
443 1250 1.371558 GACCGCCCATGGTAGATCC 59.628 63.158 11.73 0.00 44.01 3.36
444 1251 1.006102 CGACCGCCCATGGTAGATC 60.006 63.158 11.73 0.00 44.01 2.75
445 1252 1.456892 TCGACCGCCCATGGTAGAT 60.457 57.895 11.73 0.00 44.01 1.98
446 1253 2.043752 TCGACCGCCCATGGTAGA 60.044 61.111 11.73 0.00 44.01 2.59
447 1254 2.076622 CTCTCGACCGCCCATGGTAG 62.077 65.000 11.73 3.72 44.01 3.18
448 1255 2.043752 TCTCGACCGCCCATGGTA 60.044 61.111 11.73 0.00 44.01 3.25
450 1257 4.899239 GCTCTCGACCGCCCATGG 62.899 72.222 4.14 4.14 0.00 3.66
451 1258 4.899239 GGCTCTCGACCGCCCATG 62.899 72.222 8.67 0.00 40.43 3.66
468 1275 1.801913 CGACAAGCTCCCGAGTTCG 60.802 63.158 0.00 0.00 39.44 3.95
469 1276 0.733223 GTCGACAAGCTCCCGAGTTC 60.733 60.000 11.55 0.00 32.65 3.01
470 1277 1.179814 AGTCGACAAGCTCCCGAGTT 61.180 55.000 19.50 0.00 32.76 3.01
471 1278 1.179814 AAGTCGACAAGCTCCCGAGT 61.180 55.000 19.50 6.18 37.55 4.18
472 1279 0.734253 CAAGTCGACAAGCTCCCGAG 60.734 60.000 19.50 0.00 32.65 4.63
473 1280 1.289066 CAAGTCGACAAGCTCCCGA 59.711 57.895 19.50 0.00 0.00 5.14
474 1281 1.006102 ACAAGTCGACAAGCTCCCG 60.006 57.895 19.50 0.00 0.00 5.14
475 1282 0.033504 TGACAAGTCGACAAGCTCCC 59.966 55.000 19.50 0.59 0.00 4.30
476 1283 1.423395 CTGACAAGTCGACAAGCTCC 58.577 55.000 19.50 2.20 0.00 4.70
477 1284 0.787183 GCTGACAAGTCGACAAGCTC 59.213 55.000 19.50 6.94 0.00 4.09
478 1285 0.390860 AGCTGACAAGTCGACAAGCT 59.609 50.000 19.50 18.63 0.00 3.74
479 1286 0.510359 CAGCTGACAAGTCGACAAGC 59.490 55.000 19.50 16.81 0.00 4.01
480 1287 0.510359 GCAGCTGACAAGTCGACAAG 59.490 55.000 20.43 11.96 0.00 3.16
481 1288 0.880278 GGCAGCTGACAAGTCGACAA 60.880 55.000 20.43 0.00 0.00 3.18
482 1289 1.300931 GGCAGCTGACAAGTCGACA 60.301 57.895 20.43 0.00 0.00 4.35
483 1290 2.375766 CGGCAGCTGACAAGTCGAC 61.376 63.158 22.03 7.70 0.00 4.20
484 1291 2.049156 CGGCAGCTGACAAGTCGA 60.049 61.111 22.03 0.00 0.00 4.20
485 1292 3.782244 GCGGCAGCTGACAAGTCG 61.782 66.667 22.03 5.36 41.01 4.18
486 1293 2.037136 ATGCGGCAGCTGACAAGTC 61.037 57.895 22.03 5.75 45.42 3.01
487 1294 2.033141 ATGCGGCAGCTGACAAGT 59.967 55.556 22.03 0.24 45.42 3.16
488 1295 2.483745 CATGCGGCAGCTGACAAG 59.516 61.111 22.03 5.04 45.42 3.16
489 1296 3.740397 GCATGCGGCAGCTGACAA 61.740 61.111 22.03 7.50 45.42 3.18
498 1305 3.913573 CGTCGTAGTGCATGCGGC 61.914 66.667 14.09 8.63 45.13 6.53
499 1306 3.254654 CCGTCGTAGTGCATGCGG 61.255 66.667 14.09 0.97 37.64 5.69
500 1307 2.202557 TCCGTCGTAGTGCATGCG 60.203 61.111 14.09 0.00 38.51 4.73
501 1308 1.153823 ACTCCGTCGTAGTGCATGC 60.154 57.895 11.82 11.82 0.00 4.06
502 1309 0.109272 ACACTCCGTCGTAGTGCATG 60.109 55.000 16.89 0.00 46.73 4.06
503 1310 0.170561 GACACTCCGTCGTAGTGCAT 59.829 55.000 16.89 0.00 46.73 3.96
504 1311 1.577922 GACACTCCGTCGTAGTGCA 59.422 57.895 16.89 0.00 46.73 4.57
505 1312 1.154073 GGACACTCCGTCGTAGTGC 60.154 63.158 16.89 10.06 46.73 4.40
525 1332 3.406361 GAGTGCTGCCGTGTCGTG 61.406 66.667 0.00 0.00 0.00 4.35
526 1333 4.664677 GGAGTGCTGCCGTGTCGT 62.665 66.667 0.00 0.00 0.00 4.34
535 1342 4.421515 CAGGGCAGGGGAGTGCTG 62.422 72.222 0.00 0.00 43.45 4.41
560 1367 0.799152 TATACGCACGTGCTGGTTCG 60.799 55.000 35.27 22.01 39.32 3.95
561 1368 0.643820 GTATACGCACGTGCTGGTTC 59.356 55.000 35.27 19.68 39.32 3.62
562 1369 1.074319 CGTATACGCACGTGCTGGTT 61.074 55.000 35.27 20.26 39.32 3.67
563 1370 1.515519 CGTATACGCACGTGCTGGT 60.516 57.895 35.27 28.11 39.32 4.00
564 1371 3.295586 CGTATACGCACGTGCTGG 58.704 61.111 35.27 24.15 39.32 4.85
574 1381 1.942712 GTCACAGCCGGCGTATACG 60.943 63.158 23.20 20.87 43.27 3.06
575 1382 0.664761 TAGTCACAGCCGGCGTATAC 59.335 55.000 23.20 20.48 0.00 1.47
576 1383 0.664761 GTAGTCACAGCCGGCGTATA 59.335 55.000 23.20 12.24 0.00 1.47
577 1384 1.035932 AGTAGTCACAGCCGGCGTAT 61.036 55.000 23.20 7.68 0.00 3.06
578 1385 1.676635 AGTAGTCACAGCCGGCGTA 60.677 57.895 23.20 4.69 0.00 4.42
579 1386 2.989824 AGTAGTCACAGCCGGCGT 60.990 61.111 23.20 19.32 0.00 5.68
580 1387 2.507102 CAGTAGTCACAGCCGGCG 60.507 66.667 23.20 18.60 0.00 6.46
581 1388 2.125512 CCAGTAGTCACAGCCGGC 60.126 66.667 21.89 21.89 0.00 6.13
582 1389 2.579201 CCCAGTAGTCACAGCCGG 59.421 66.667 0.00 0.00 0.00 6.13
583 1390 1.320344 TAGCCCAGTAGTCACAGCCG 61.320 60.000 0.00 0.00 0.00 5.52
584 1391 0.902531 TTAGCCCAGTAGTCACAGCC 59.097 55.000 0.00 0.00 0.00 4.85
585 1392 2.555199 CATTAGCCCAGTAGTCACAGC 58.445 52.381 0.00 0.00 0.00 4.40
586 1393 2.501723 ACCATTAGCCCAGTAGTCACAG 59.498 50.000 0.00 0.00 0.00 3.66
587 1394 2.546899 ACCATTAGCCCAGTAGTCACA 58.453 47.619 0.00 0.00 0.00 3.58
588 1395 3.492829 GCTACCATTAGCCCAGTAGTCAC 60.493 52.174 0.00 0.00 44.55 3.67
589 1396 2.698797 GCTACCATTAGCCCAGTAGTCA 59.301 50.000 0.00 0.00 44.55 3.41
590 1397 3.388345 GCTACCATTAGCCCAGTAGTC 57.612 52.381 0.00 0.00 44.55 2.59
600 1407 2.550978 CGAACCACTGGCTACCATTAG 58.449 52.381 0.00 0.00 30.82 1.73
601 1408 1.406341 GCGAACCACTGGCTACCATTA 60.406 52.381 0.00 0.00 30.82 1.90
602 1409 0.676782 GCGAACCACTGGCTACCATT 60.677 55.000 0.00 0.00 30.82 3.16
603 1410 1.078426 GCGAACCACTGGCTACCAT 60.078 57.895 0.00 0.00 30.82 3.55
604 1411 0.901114 TAGCGAACCACTGGCTACCA 60.901 55.000 0.00 0.00 38.19 3.25
605 1412 0.248289 TTAGCGAACCACTGGCTACC 59.752 55.000 0.00 0.00 38.86 3.18
606 1413 1.933853 CATTAGCGAACCACTGGCTAC 59.066 52.381 0.00 0.00 38.86 3.58
607 1414 1.828595 TCATTAGCGAACCACTGGCTA 59.171 47.619 0.00 0.00 38.19 3.93
608 1415 0.613260 TCATTAGCGAACCACTGGCT 59.387 50.000 0.00 0.00 40.68 4.75
609 1416 1.331756 CATCATTAGCGAACCACTGGC 59.668 52.381 0.00 0.00 0.00 4.85
610 1417 2.905075 TCATCATTAGCGAACCACTGG 58.095 47.619 0.00 0.00 0.00 4.00
611 1418 4.375272 AGATCATCATTAGCGAACCACTG 58.625 43.478 0.00 0.00 0.00 3.66
612 1419 4.343526 AGAGATCATCATTAGCGAACCACT 59.656 41.667 0.00 0.00 0.00 4.00
613 1420 4.626042 AGAGATCATCATTAGCGAACCAC 58.374 43.478 0.00 0.00 0.00 4.16
614 1421 4.557496 CGAGAGATCATCATTAGCGAACCA 60.557 45.833 0.00 0.00 0.00 3.67
615 1422 3.917380 CGAGAGATCATCATTAGCGAACC 59.083 47.826 0.00 0.00 0.00 3.62
616 1423 3.363426 GCGAGAGATCATCATTAGCGAAC 59.637 47.826 0.00 0.00 0.00 3.95
617 1424 3.004734 TGCGAGAGATCATCATTAGCGAA 59.995 43.478 0.00 0.00 0.00 4.70
618 1425 2.554032 TGCGAGAGATCATCATTAGCGA 59.446 45.455 0.00 0.00 0.00 4.93
619 1426 2.660715 GTGCGAGAGATCATCATTAGCG 59.339 50.000 0.00 0.00 0.00 4.26
620 1427 3.911868 AGTGCGAGAGATCATCATTAGC 58.088 45.455 0.00 0.00 0.00 3.09
621 1428 4.157649 CGAGTGCGAGAGATCATCATTAG 58.842 47.826 0.00 0.00 40.82 1.73
622 1429 3.610349 GCGAGTGCGAGAGATCATCATTA 60.610 47.826 0.00 0.00 40.82 1.90
623 1430 2.861750 GCGAGTGCGAGAGATCATCATT 60.862 50.000 0.00 0.00 40.82 2.57
624 1431 1.335780 GCGAGTGCGAGAGATCATCAT 60.336 52.381 0.00 0.00 40.82 2.45
625 1432 0.029967 GCGAGTGCGAGAGATCATCA 59.970 55.000 0.00 0.00 40.82 3.07
626 1433 2.794941 GCGAGTGCGAGAGATCATC 58.205 57.895 0.00 0.00 40.82 2.92
650 1457 2.985847 AAAGCAAGTGGGAGCCGC 60.986 61.111 0.00 0.00 0.00 6.53
651 1458 2.956987 CAAAGCAAGTGGGAGCCG 59.043 61.111 0.00 0.00 0.00 5.52
652 1459 2.653115 GCAAAGCAAGTGGGAGCC 59.347 61.111 0.00 0.00 0.00 4.70
653 1460 2.653115 GGCAAAGCAAGTGGGAGC 59.347 61.111 0.00 0.00 0.00 4.70
654 1461 0.962356 ATCGGCAAAGCAAGTGGGAG 60.962 55.000 0.00 0.00 0.00 4.30
655 1462 1.074775 ATCGGCAAAGCAAGTGGGA 59.925 52.632 0.00 0.00 0.00 4.37
656 1463 1.213537 CATCGGCAAAGCAAGTGGG 59.786 57.895 0.00 0.00 0.00 4.61
657 1464 1.213537 CCATCGGCAAAGCAAGTGG 59.786 57.895 0.00 0.00 0.00 4.00
658 1465 0.387622 CACCATCGGCAAAGCAAGTG 60.388 55.000 0.00 0.00 0.00 3.16
659 1466 1.959085 CACCATCGGCAAAGCAAGT 59.041 52.632 0.00 0.00 0.00 3.16
660 1467 1.444895 GCACCATCGGCAAAGCAAG 60.445 57.895 0.00 0.00 0.00 4.01
661 1468 2.198969 TGCACCATCGGCAAAGCAA 61.199 52.632 0.00 0.00 38.54 3.91
662 1469 2.596923 TGCACCATCGGCAAAGCA 60.597 55.556 0.00 0.00 38.54 3.91
663 1470 2.126346 GTGCACCATCGGCAAAGC 60.126 61.111 5.22 0.00 43.91 3.51
664 1471 2.568090 GGTGCACCATCGGCAAAG 59.432 61.111 31.23 0.00 43.91 2.77
665 1472 3.361158 CGGTGCACCATCGGCAAA 61.361 61.111 34.16 0.00 43.91 3.68
686 1493 4.796231 CACGGCCGTTCTCTCCCG 62.796 72.222 32.11 11.33 45.80 5.14
714 1521 1.004079 GTACGTCGGAGTAGCACTAGC 60.004 57.143 0.00 0.00 42.56 3.42
715 1522 2.539274 GAGTACGTCGGAGTAGCACTAG 59.461 54.545 0.00 0.00 0.00 2.57
716 1523 2.167281 AGAGTACGTCGGAGTAGCACTA 59.833 50.000 0.00 0.00 0.00 2.74
717 1524 1.066286 AGAGTACGTCGGAGTAGCACT 60.066 52.381 0.00 0.00 0.00 4.40
718 1525 1.367659 AGAGTACGTCGGAGTAGCAC 58.632 55.000 0.00 0.00 0.00 4.40
719 1526 2.167281 AGTAGAGTACGTCGGAGTAGCA 59.833 50.000 0.00 0.00 0.00 3.49
720 1527 2.794350 GAGTAGAGTACGTCGGAGTAGC 59.206 54.545 0.00 0.00 0.00 3.58
721 1528 4.043750 CAGAGTAGAGTACGTCGGAGTAG 58.956 52.174 0.00 0.00 0.00 2.57
722 1529 3.736433 GCAGAGTAGAGTACGTCGGAGTA 60.736 52.174 0.00 0.00 0.00 2.59
723 1530 2.891112 CAGAGTAGAGTACGTCGGAGT 58.109 52.381 0.00 0.00 0.00 3.85
724 1531 1.593933 GCAGAGTAGAGTACGTCGGAG 59.406 57.143 0.00 0.00 0.00 4.63
725 1532 1.206610 AGCAGAGTAGAGTACGTCGGA 59.793 52.381 0.00 0.00 0.00 4.55
726 1533 1.593933 GAGCAGAGTAGAGTACGTCGG 59.406 57.143 0.00 0.00 0.00 4.79
727 1534 1.255859 CGAGCAGAGTAGAGTACGTCG 59.744 57.143 0.00 0.00 0.00 5.12
728 1535 1.004715 GCGAGCAGAGTAGAGTACGTC 60.005 57.143 0.00 0.00 0.00 4.34
729 1536 1.008329 GCGAGCAGAGTAGAGTACGT 58.992 55.000 0.00 0.00 0.00 3.57
730 1537 1.004398 CAGCGAGCAGAGTAGAGTACG 60.004 57.143 0.00 0.00 0.00 3.67
731 1538 1.268335 GCAGCGAGCAGAGTAGAGTAC 60.268 57.143 0.00 0.00 44.79 2.73
732 1539 1.018148 GCAGCGAGCAGAGTAGAGTA 58.982 55.000 0.00 0.00 44.79 2.59
733 1540 1.806568 GCAGCGAGCAGAGTAGAGT 59.193 57.895 0.00 0.00 44.79 3.24
734 1541 4.707988 GCAGCGAGCAGAGTAGAG 57.292 61.111 0.00 0.00 44.79 2.43
748 1555 4.711949 AGCAACCGAGGCAGGCAG 62.712 66.667 0.00 0.00 33.69 4.85
752 1559 4.711949 AGGCAGCAACCGAGGCAG 62.712 66.667 0.00 0.00 33.69 4.85
753 1560 4.704833 GAGGCAGCAACCGAGGCA 62.705 66.667 0.00 0.00 33.69 4.75
755 1562 4.785453 GGGAGGCAGCAACCGAGG 62.785 72.222 0.00 0.00 33.69 4.63
759 1566 2.125106 CTACGGGAGGCAGCAACC 60.125 66.667 0.00 0.00 0.00 3.77
760 1567 1.448013 GACTACGGGAGGCAGCAAC 60.448 63.158 0.00 0.00 30.86 4.17
761 1568 2.656069 GGACTACGGGAGGCAGCAA 61.656 63.158 0.00 0.00 33.03 3.91
762 1569 3.075005 GGACTACGGGAGGCAGCA 61.075 66.667 0.00 0.00 33.03 4.41
763 1570 3.851128 GGGACTACGGGAGGCAGC 61.851 72.222 0.00 0.00 33.03 5.25
764 1571 3.528370 CGGGACTACGGGAGGCAG 61.528 72.222 0.00 0.00 33.03 4.85
771 1578 3.834799 GAGTGGGCGGGACTACGG 61.835 72.222 0.00 0.00 0.00 4.02
772 1579 3.834799 GGAGTGGGCGGGACTACG 61.835 72.222 0.00 0.00 0.00 3.51
773 1580 3.834799 CGGAGTGGGCGGGACTAC 61.835 72.222 0.00 0.00 0.00 2.73
774 1581 4.371417 ACGGAGTGGGCGGGACTA 62.371 66.667 0.00 0.00 42.51 2.59
786 1593 0.455005 GTCGGTAGAAAGGGACGGAG 59.545 60.000 0.00 0.00 0.00 4.63
787 1594 0.967380 GGTCGGTAGAAAGGGACGGA 60.967 60.000 0.00 0.00 0.00 4.69
788 1595 0.969409 AGGTCGGTAGAAAGGGACGG 60.969 60.000 0.00 0.00 0.00 4.79
789 1596 0.455005 GAGGTCGGTAGAAAGGGACG 59.545 60.000 0.00 0.00 0.00 4.79
790 1597 0.822811 GGAGGTCGGTAGAAAGGGAC 59.177 60.000 0.00 0.00 0.00 4.46
791 1598 0.325016 GGGAGGTCGGTAGAAAGGGA 60.325 60.000 0.00 0.00 0.00 4.20
792 1599 1.673808 CGGGAGGTCGGTAGAAAGGG 61.674 65.000 0.00 0.00 0.00 3.95
793 1600 1.814527 CGGGAGGTCGGTAGAAAGG 59.185 63.158 0.00 0.00 0.00 3.11
794 1601 1.141234 GCGGGAGGTCGGTAGAAAG 59.859 63.158 0.00 0.00 0.00 2.62
795 1602 1.304713 AGCGGGAGGTCGGTAGAAA 60.305 57.895 0.00 0.00 39.18 2.52
796 1603 2.357836 AGCGGGAGGTCGGTAGAA 59.642 61.111 0.00 0.00 39.18 2.10
805 1612 1.400530 ATTAACTCGGGAGCGGGAGG 61.401 60.000 0.00 0.00 34.58 4.30
806 1613 0.464452 AATTAACTCGGGAGCGGGAG 59.536 55.000 0.00 0.00 36.36 4.30
807 1614 0.177141 CAATTAACTCGGGAGCGGGA 59.823 55.000 0.00 0.00 0.00 5.14
808 1615 1.436983 GCAATTAACTCGGGAGCGGG 61.437 60.000 0.00 0.00 0.00 6.13
809 1616 0.742990 TGCAATTAACTCGGGAGCGG 60.743 55.000 0.00 0.00 0.00 5.52
810 1617 0.373716 GTGCAATTAACTCGGGAGCG 59.626 55.000 0.00 0.00 0.00 5.03
811 1618 1.398390 CTGTGCAATTAACTCGGGAGC 59.602 52.381 0.00 0.00 0.00 4.70
812 1619 2.972625 TCTGTGCAATTAACTCGGGAG 58.027 47.619 0.00 0.00 0.00 4.30
813 1620 3.244422 ACTTCTGTGCAATTAACTCGGGA 60.244 43.478 0.00 0.00 0.00 5.14
814 1621 3.074412 ACTTCTGTGCAATTAACTCGGG 58.926 45.455 0.00 0.00 0.00 5.14
886 1693 5.428253 AGAGCAATATTGGTAATGACACGT 58.572 37.500 19.59 0.00 39.30 4.49
894 1701 8.965819 TGCAAAAATCTAGAGCAATATTGGTAA 58.034 29.630 19.59 10.40 39.30 2.85
901 1708 9.189156 ACCTATTTGCAAAAATCTAGAGCAATA 57.811 29.630 17.19 8.32 43.71 1.90
1407 5687 7.753531 CTGTTCCAGAAGAAAGCAAGAAGCG 62.754 48.000 0.00 0.00 40.41 4.68
1498 5879 2.481104 GGAAGCAGATCTCTTCTCCACG 60.481 54.545 22.88 2.00 39.75 4.94
1499 5880 2.765699 AGGAAGCAGATCTCTTCTCCAC 59.234 50.000 22.88 13.15 39.75 4.02
1602 6035 3.415457 AAAGAGTCTGGAGAAGCCTTG 57.585 47.619 0.00 0.00 37.63 3.61
1606 6039 6.220726 AGAAGATAAAGAGTCTGGAGAAGC 57.779 41.667 0.00 0.00 0.00 3.86
1607 6040 8.066612 AGAAGAAGATAAAGAGTCTGGAGAAG 57.933 38.462 0.00 0.00 0.00 2.85
1609 6042 7.671819 TGAAGAAGAAGATAAAGAGTCTGGAGA 59.328 37.037 0.00 0.00 0.00 3.71
1752 7539 1.153745 CCTCTTCTCCTCAACCGCG 60.154 63.158 0.00 0.00 0.00 6.46
1792 7579 0.961019 TTTGCCTCCATTGCTGACAC 59.039 50.000 0.00 0.00 0.00 3.67
1809 7596 0.472471 TGACCCGCTCAGGTTTCTTT 59.528 50.000 0.00 0.00 41.42 2.52
1855 7643 4.477249 CCAGATTCCCATTGCCTTATTCT 58.523 43.478 0.00 0.00 0.00 2.40
1957 7835 0.685131 TCCAATGGCATGGCTTCCTG 60.685 55.000 21.08 9.97 40.46 3.86
2008 7893 0.681733 TCTTCTTGAGCGAGCTGGTT 59.318 50.000 0.84 0.00 0.00 3.67
2053 7946 3.196469 TCCTTGACATCTACAAGCTCCTG 59.804 47.826 0.00 0.00 42.03 3.86
2155 8425 4.065281 CGGCGGGTCTTCTTCGGT 62.065 66.667 0.00 0.00 0.00 4.69
2927 10765 8.946085 CAGTACCAACATTGCTCTAGATTTTTA 58.054 33.333 0.00 0.00 0.00 1.52
3029 11012 3.984193 CTTTCAGCCTGGGAGCGGG 62.984 68.421 0.00 0.00 38.01 6.13
3032 11015 2.034687 TGCTTTCAGCCTGGGAGC 59.965 61.111 11.66 11.66 41.51 4.70
3034 11017 2.032528 CGTGCTTTCAGCCTGGGA 59.967 61.111 0.00 0.00 41.51 4.37
3035 11018 3.741476 GCGTGCTTTCAGCCTGGG 61.741 66.667 0.00 0.00 41.51 4.45
3036 11019 3.741476 GGCGTGCTTTCAGCCTGG 61.741 66.667 0.00 0.00 46.83 4.45
3070 11124 1.001406 CTATCCAGATTCCGGGAGCAC 59.999 57.143 0.00 0.00 39.96 4.40
3152 11220 1.512926 AGTTGTAGAAAGCACGCTGG 58.487 50.000 0.00 0.00 0.00 4.85
3162 11230 1.136690 CGCGAGCACAAGTTGTAGAA 58.863 50.000 8.49 0.00 0.00 2.10
3163 11231 2.809181 CGCGAGCACAAGTTGTAGA 58.191 52.632 8.49 0.00 0.00 2.59
3244 11367 3.366374 GCTGTACTTTTGCCAGTTGGATC 60.366 47.826 1.45 0.00 37.39 3.36
3282 11405 1.416373 CACCGCGAGATGATGATGAG 58.584 55.000 8.23 0.00 0.00 2.90
3288 11411 1.217585 CGAATGCACCGCGAGATGAT 61.218 55.000 8.23 0.00 0.00 2.45
3342 11466 1.395045 TAGAGAGGGCAGGCGACATG 61.395 60.000 0.00 0.00 0.00 3.21
3343 11467 1.075970 TAGAGAGGGCAGGCGACAT 60.076 57.895 0.00 0.00 0.00 3.06
3472 11616 1.089112 TGATGCAGATGTTTGCCTCG 58.911 50.000 0.00 0.00 43.43 4.63
3476 11620 2.460918 GCTGATGATGCAGATGTTTGC 58.539 47.619 0.00 0.00 44.33 3.68
3569 11715 0.108898 CTCTCTGGTGCGTCTCCAAG 60.109 60.000 3.03 4.20 34.35 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.