Multiple sequence alignment - TraesCS2D01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G382300 chr2D 100.000 3463 0 0 1 3463 486330492 486333954 0.000000e+00 6396
1 TraesCS2D01G382300 chr2D 90.816 196 10 6 2519 2708 551608713 551608906 4.440000e-64 255
2 TraesCS2D01G382300 chr2B 87.670 1914 125 37 663 2525 571240458 571242311 0.000000e+00 2124
3 TraesCS2D01G382300 chr2B 80.854 632 84 23 2852 3463 448926307 448926921 2.430000e-126 462
4 TraesCS2D01G382300 chr2B 94.619 223 4 2 1 223 571215841 571216055 4.280000e-89 339
5 TraesCS2D01G382300 chr2B 91.739 230 15 2 442 671 571217127 571217352 2.010000e-82 316
6 TraesCS2D01G382300 chr2B 93.407 182 7 3 2525 2701 771215136 771215317 7.370000e-67 265
7 TraesCS2D01G382300 chr2B 91.579 190 10 4 2529 2714 118465813 118465626 1.230000e-64 257
8 TraesCS2D01G382300 chr2A 91.355 775 34 9 1769 2525 631789572 631790331 0.000000e+00 1029
9 TraesCS2D01G382300 chr2A 86.911 955 52 21 769 1683 631788624 631789545 0.000000e+00 1003
10 TraesCS2D01G382300 chr2A 87.654 324 12 6 1 296 631785119 631785442 5.500000e-93 351
11 TraesCS2D01G382300 chr6D 83.173 624 82 16 2852 3463 158982366 158981754 1.820000e-152 549
12 TraesCS2D01G382300 chr4D 83.062 614 90 13 2850 3458 471272682 471273286 2.350000e-151 545
13 TraesCS2D01G382300 chr7B 82.297 627 79 22 2852 3463 7290615 7290006 6.630000e-142 514
14 TraesCS2D01G382300 chr5B 81.629 626 83 21 2850 3463 421558736 421558131 1.120000e-134 490
15 TraesCS2D01G382300 chr5B 81.410 624 82 24 2852 3461 432319367 432319970 2.420000e-131 479
16 TraesCS2D01G382300 chr1B 81.029 622 88 22 2853 3463 648107500 648108102 5.230000e-128 468
17 TraesCS2D01G382300 chr3B 80.031 636 96 21 2846 3463 811826167 811826789 3.170000e-120 442
18 TraesCS2D01G382300 chr5A 80.291 619 93 22 2862 3463 667188318 667187712 1.140000e-119 440
19 TraesCS2D01G382300 chr3D 93.085 188 6 4 2524 2704 486691639 486691452 5.700000e-68 268
20 TraesCS2D01G382300 chr3D 90.640 203 14 3 2513 2710 597833729 597833931 7.370000e-67 265
21 TraesCS2D01G382300 chr1D 91.371 197 12 3 2513 2705 375011903 375012098 7.370000e-67 265
22 TraesCS2D01G382300 chr1D 91.710 193 10 4 2516 2703 470861940 470861749 2.650000e-66 263
23 TraesCS2D01G382300 chr4A 92.818 181 11 2 2526 2704 628419536 628419356 9.530000e-66 261
24 TraesCS2D01G382300 chr5D 92.697 178 11 2 2525 2702 544718932 544719107 4.440000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G382300 chr2D 486330492 486333954 3462 False 6396.000000 6396 100.000 1 3463 1 chr2D.!!$F1 3462
1 TraesCS2D01G382300 chr2B 571240458 571242311 1853 False 2124.000000 2124 87.670 663 2525 1 chr2B.!!$F2 1862
2 TraesCS2D01G382300 chr2B 448926307 448926921 614 False 462.000000 462 80.854 2852 3463 1 chr2B.!!$F1 611
3 TraesCS2D01G382300 chr2B 571215841 571217352 1511 False 327.500000 339 93.179 1 671 2 chr2B.!!$F4 670
4 TraesCS2D01G382300 chr2A 631785119 631790331 5212 False 794.333333 1029 88.640 1 2525 3 chr2A.!!$F1 2524
5 TraesCS2D01G382300 chr6D 158981754 158982366 612 True 549.000000 549 83.173 2852 3463 1 chr6D.!!$R1 611
6 TraesCS2D01G382300 chr4D 471272682 471273286 604 False 545.000000 545 83.062 2850 3458 1 chr4D.!!$F1 608
7 TraesCS2D01G382300 chr7B 7290006 7290615 609 True 514.000000 514 82.297 2852 3463 1 chr7B.!!$R1 611
8 TraesCS2D01G382300 chr5B 421558131 421558736 605 True 490.000000 490 81.629 2850 3463 1 chr5B.!!$R1 613
9 TraesCS2D01G382300 chr5B 432319367 432319970 603 False 479.000000 479 81.410 2852 3461 1 chr5B.!!$F1 609
10 TraesCS2D01G382300 chr1B 648107500 648108102 602 False 468.000000 468 81.029 2853 3463 1 chr1B.!!$F1 610
11 TraesCS2D01G382300 chr3B 811826167 811826789 622 False 442.000000 442 80.031 2846 3463 1 chr3B.!!$F1 617
12 TraesCS2D01G382300 chr5A 667187712 667188318 606 True 440.000000 440 80.291 2862 3463 1 chr5A.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 4071 0.103208 CCTGTCAGCACGATACCCTC 59.897 60.0 0.00 0.0 0.00 4.3 F
1600 5115 0.179009 TGGCCATTCATGCTAGCCTC 60.179 55.0 13.29 0.0 44.19 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 5167 0.038166 ACCGTGGAGGATGCATGTTT 59.962 50.0 2.46 0.0 42.44 2.83 R
2750 6303 0.315568 TGCAAATTGTTGGGCCGTAC 59.684 50.0 0.00 0.0 35.10 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 3.995506 AAAGGGCGCGAGATTGGGG 62.996 63.158 12.10 0.00 0.00 4.96
214 220 4.111375 ACAAGATTAGCGTGTGTAGAGG 57.889 45.455 0.00 0.00 37.82 3.69
215 221 2.860735 CAAGATTAGCGTGTGTAGAGGC 59.139 50.000 0.00 0.00 0.00 4.70
217 223 1.409427 GATTAGCGTGTGTAGAGGCCT 59.591 52.381 3.86 3.86 0.00 5.19
218 224 1.263356 TTAGCGTGTGTAGAGGCCTT 58.737 50.000 6.77 0.00 0.00 4.35
275 927 2.608467 AGCTACGTTACGACACTGTC 57.392 50.000 13.03 0.00 0.00 3.51
316 1092 4.628963 TGTTAGAGTTTTCCCCCTGTAC 57.371 45.455 0.00 0.00 0.00 2.90
320 1096 1.144612 AGTTTTCCCCCTGTACCCCC 61.145 60.000 0.00 0.00 0.00 5.40
349 1140 5.411669 GGTGTGTTTAGAACAGGTAATGGAG 59.588 44.000 0.00 0.00 43.10 3.86
370 1161 5.310720 AGTTTTGTTTCAGTGTTGGAGTC 57.689 39.130 0.00 0.00 0.00 3.36
435 1226 4.320935 GCTTCTCTACTCGGATGAAGGATC 60.321 50.000 0.00 0.00 35.86 3.36
440 1231 2.587522 ACTCGGATGAAGGATCGATGA 58.412 47.619 0.54 0.00 30.87 2.92
442 1233 3.384789 ACTCGGATGAAGGATCGATGAAA 59.615 43.478 0.54 0.00 30.87 2.69
443 1234 3.982475 TCGGATGAAGGATCGATGAAAG 58.018 45.455 0.54 0.00 30.87 2.62
444 1235 3.636764 TCGGATGAAGGATCGATGAAAGA 59.363 43.478 0.54 0.00 30.87 2.52
445 1236 4.099419 TCGGATGAAGGATCGATGAAAGAA 59.901 41.667 0.54 0.00 30.87 2.52
446 1237 4.811024 CGGATGAAGGATCGATGAAAGAAA 59.189 41.667 0.54 0.00 30.87 2.52
447 1238 5.294306 CGGATGAAGGATCGATGAAAGAAAA 59.706 40.000 0.54 0.00 30.87 2.29
448 1239 6.510799 CGGATGAAGGATCGATGAAAGAAAAG 60.511 42.308 0.54 0.00 30.87 2.27
449 1240 6.540189 GGATGAAGGATCGATGAAAGAAAAGA 59.460 38.462 0.54 0.00 30.87 2.52
450 1241 7.066284 GGATGAAGGATCGATGAAAGAAAAGAA 59.934 37.037 0.54 0.00 30.87 2.52
468 1378 1.750778 GAAGGAGAGGCTCAGACTGAG 59.249 57.143 25.45 25.45 46.90 3.35
469 1379 0.704076 AGGAGAGGCTCAGACTGAGT 59.296 55.000 28.76 13.89 45.94 3.41
481 1391 4.498241 TCAGACTGAGTTCATTTCATCGG 58.502 43.478 0.00 0.00 0.00 4.18
492 1402 2.418368 TTTCATCGGTGGCTTGCTAT 57.582 45.000 0.00 0.00 0.00 2.97
493 1403 3.552132 TTTCATCGGTGGCTTGCTATA 57.448 42.857 0.00 0.00 0.00 1.31
494 1404 2.526304 TCATCGGTGGCTTGCTATAC 57.474 50.000 0.00 0.00 0.00 1.47
495 1405 1.139989 CATCGGTGGCTTGCTATACG 58.860 55.000 0.00 0.00 0.00 3.06
496 1406 1.037493 ATCGGTGGCTTGCTATACGA 58.963 50.000 9.91 9.91 0.00 3.43
508 1418 3.447742 TGCTATACGAACGAGACGACTA 58.552 45.455 0.14 0.00 34.70 2.59
535 1445 6.869388 TGCTTATATATTGCACGGTTCGATTA 59.131 34.615 8.44 0.00 0.00 1.75
591 1501 1.001633 ACTTAGCCCACTACACGGTTG 59.998 52.381 0.00 0.00 0.00 3.77
594 1504 1.071814 GCCCACTACACGGTTGGAA 59.928 57.895 0.00 0.00 0.00 3.53
600 2766 1.975680 ACTACACGGTTGGAATCACCT 59.024 47.619 0.00 0.00 39.86 4.00
624 2790 3.619038 CCATCCTTGTACGCTTTCTTCTC 59.381 47.826 0.00 0.00 0.00 2.87
640 2806 4.238514 TCTTCTCTGCTTCTTTACGCTTC 58.761 43.478 0.00 0.00 0.00 3.86
651 2817 0.690762 TTACGCTTCCCTCCTTGCTT 59.309 50.000 0.00 0.00 0.00 3.91
655 2821 0.250901 GCTTCCCTCCTTGCTTGACA 60.251 55.000 0.00 0.00 0.00 3.58
678 4071 0.103208 CCTGTCAGCACGATACCCTC 59.897 60.000 0.00 0.00 0.00 4.30
682 4075 1.103803 TCAGCACGATACCCTCTGAC 58.896 55.000 0.00 0.00 0.00 3.51
683 4076 0.817654 CAGCACGATACCCTCTGACA 59.182 55.000 0.00 0.00 0.00 3.58
684 4077 0.818296 AGCACGATACCCTCTGACAC 59.182 55.000 0.00 0.00 0.00 3.67
685 4078 0.179108 GCACGATACCCTCTGACACC 60.179 60.000 0.00 0.00 0.00 4.16
686 4079 1.475403 CACGATACCCTCTGACACCT 58.525 55.000 0.00 0.00 0.00 4.00
687 4080 1.405821 CACGATACCCTCTGACACCTC 59.594 57.143 0.00 0.00 0.00 3.85
689 4082 1.950909 CGATACCCTCTGACACCTCTC 59.049 57.143 0.00 0.00 0.00 3.20
690 4083 1.950909 GATACCCTCTGACACCTCTCG 59.049 57.143 0.00 0.00 0.00 4.04
698 4091 4.262079 CCTCTGACACCTCTCGTTTACTTT 60.262 45.833 0.00 0.00 0.00 2.66
731 4124 2.781595 AAACCAGCGGTGCCGTCTAG 62.782 60.000 9.63 5.86 42.09 2.43
784 4241 2.028484 TCGTGAACGAGTGCCACC 59.972 61.111 0.50 0.00 44.22 4.61
790 4247 0.736053 GAACGAGTGCCACCACAAAA 59.264 50.000 0.00 0.00 44.53 2.44
861 4318 2.430921 CGGACGAGTCAGCACACC 60.431 66.667 5.55 0.00 0.00 4.16
862 4319 2.430921 GGACGAGTCAGCACACCG 60.431 66.667 5.55 0.00 0.00 4.94
870 4327 1.021390 GTCAGCACACCGATCCCTTG 61.021 60.000 0.00 0.00 0.00 3.61
1001 4476 3.010420 GCCAGAGAATTTACTCACCCAC 58.990 50.000 0.00 0.00 39.14 4.61
1002 4477 3.559171 GCCAGAGAATTTACTCACCCACA 60.559 47.826 0.00 0.00 39.14 4.17
1003 4478 4.003648 CCAGAGAATTTACTCACCCACAC 58.996 47.826 0.00 0.00 39.14 3.82
1004 4479 4.504864 CCAGAGAATTTACTCACCCACACA 60.505 45.833 0.00 0.00 39.14 3.72
1005 4480 4.452455 CAGAGAATTTACTCACCCACACAC 59.548 45.833 0.00 0.00 39.14 3.82
1006 4481 4.102524 AGAGAATTTACTCACCCACACACA 59.897 41.667 0.00 0.00 39.14 3.72
1007 4482 4.134563 AGAATTTACTCACCCACACACAC 58.865 43.478 0.00 0.00 0.00 3.82
1008 4483 2.335316 TTTACTCACCCACACACACC 57.665 50.000 0.00 0.00 0.00 4.16
1012 4487 2.518349 CACCCACACACACCCACC 60.518 66.667 0.00 0.00 0.00 4.61
1025 4500 1.145900 ACCCACCCACCATTGATCCA 61.146 55.000 0.00 0.00 0.00 3.41
1210 4700 2.996621 CTGTGGGTGATTCTTCTTCGAC 59.003 50.000 0.00 0.00 0.00 4.20
1223 4713 4.402793 TCTTCTTCGACTATTCTTCCCCTG 59.597 45.833 0.00 0.00 0.00 4.45
1224 4714 3.709587 TCTTCGACTATTCTTCCCCTGT 58.290 45.455 0.00 0.00 0.00 4.00
1225 4715 3.447586 TCTTCGACTATTCTTCCCCTGTG 59.552 47.826 0.00 0.00 0.00 3.66
1226 4716 2.108168 TCGACTATTCTTCCCCTGTGG 58.892 52.381 0.00 0.00 0.00 4.17
1227 4717 1.473434 CGACTATTCTTCCCCTGTGGC 60.473 57.143 0.00 0.00 0.00 5.01
1228 4718 1.840635 GACTATTCTTCCCCTGTGGCT 59.159 52.381 0.00 0.00 0.00 4.75
1450 4940 6.820152 AGGTAAACTTTCAGTTACGTCAGTTT 59.180 34.615 0.00 0.00 37.47 2.66
1457 4948 7.332678 ACTTTCAGTTACGTCAGTTTTACTGTT 59.667 33.333 6.71 0.00 46.03 3.16
1522 5037 1.199789 TGAGCAGCCAGTAAAATTGCG 59.800 47.619 0.00 0.00 39.63 4.85
1571 5086 1.191944 CAACATGATCGTCTCCGTCG 58.808 55.000 0.00 0.00 35.01 5.12
1574 5089 0.658368 CATGATCGTCTCCGTCGTCT 59.342 55.000 0.00 0.00 35.01 4.18
1582 5097 0.456142 TCTCCGTCGTCTTCGCAATG 60.456 55.000 0.00 0.00 36.96 2.82
1584 5099 2.395690 CGTCGTCTTCGCAATGGC 59.604 61.111 0.00 0.00 36.96 4.40
1588 5103 0.676466 TCGTCTTCGCAATGGCCATT 60.676 50.000 25.73 25.73 36.38 3.16
1592 5107 1.406180 TCTTCGCAATGGCCATTCATG 59.594 47.619 28.42 19.11 36.38 3.07
1596 5111 1.335597 CGCAATGGCCATTCATGCTAG 60.336 52.381 29.23 18.51 36.38 3.42
1600 5115 0.179009 TGGCCATTCATGCTAGCCTC 60.179 55.000 13.29 0.00 44.19 4.70
1628 5143 4.202253 ACACAACTCTGCATGTAAGTCTCA 60.202 41.667 0.00 0.00 0.00 3.27
1629 5144 4.751600 CACAACTCTGCATGTAAGTCTCAA 59.248 41.667 0.00 0.00 0.00 3.02
1652 5167 7.659799 TCAAAAATGGTCAGAATTAACTCGAGA 59.340 33.333 21.68 0.00 0.00 4.04
1655 5170 6.969828 ATGGTCAGAATTAACTCGAGAAAC 57.030 37.500 21.68 3.19 0.00 2.78
1656 5171 5.849510 TGGTCAGAATTAACTCGAGAAACA 58.150 37.500 21.68 0.00 0.00 2.83
1657 5172 6.464222 TGGTCAGAATTAACTCGAGAAACAT 58.536 36.000 21.68 5.86 0.00 2.71
1658 5173 6.368791 TGGTCAGAATTAACTCGAGAAACATG 59.631 38.462 21.68 11.72 0.00 3.21
1686 5201 4.195334 GGTCCCCGGCTGATGCAT 62.195 66.667 0.00 0.00 41.91 3.96
1687 5202 2.818169 GGTCCCCGGCTGATGCATA 61.818 63.158 0.00 0.00 41.91 3.14
1688 5203 1.598130 GTCCCCGGCTGATGCATAC 60.598 63.158 0.00 0.00 41.91 2.39
1689 5204 2.069430 TCCCCGGCTGATGCATACA 61.069 57.895 0.00 0.00 41.91 2.29
1690 5205 1.598962 CCCCGGCTGATGCATACAG 60.599 63.158 16.98 16.98 41.91 2.74
1704 5219 4.713824 GCATACAGCATACCCTATCGTA 57.286 45.455 0.00 0.00 44.79 3.43
1705 5220 5.263968 GCATACAGCATACCCTATCGTAT 57.736 43.478 0.00 0.00 44.79 3.06
1708 5223 4.436242 ACAGCATACCCTATCGTATTCG 57.564 45.455 0.00 0.00 38.55 3.34
1709 5224 9.483725 GCATACAGCATACCCTATCGTATTCGA 62.484 44.444 0.00 0.00 46.30 3.71
1732 5247 7.907214 GACATTTTGTCAAGTAGGAGTATGT 57.093 36.000 2.85 0.00 46.22 2.29
1733 5248 8.997621 GACATTTTGTCAAGTAGGAGTATGTA 57.002 34.615 2.85 0.00 46.22 2.29
1734 5249 9.601217 GACATTTTGTCAAGTAGGAGTATGTAT 57.399 33.333 2.85 0.00 46.22 2.29
1735 5250 9.383519 ACATTTTGTCAAGTAGGAGTATGTATG 57.616 33.333 0.00 0.00 0.00 2.39
1736 5251 8.830580 CATTTTGTCAAGTAGGAGTATGTATGG 58.169 37.037 0.00 0.00 0.00 2.74
1737 5252 5.531122 TGTCAAGTAGGAGTATGTATGGC 57.469 43.478 0.00 0.00 0.00 4.40
1738 5253 4.959839 TGTCAAGTAGGAGTATGTATGGCA 59.040 41.667 0.00 0.00 0.00 4.92
1739 5254 5.423931 TGTCAAGTAGGAGTATGTATGGCAA 59.576 40.000 0.00 0.00 0.00 4.52
1740 5255 5.986135 GTCAAGTAGGAGTATGTATGGCAAG 59.014 44.000 0.00 0.00 0.00 4.01
1741 5256 5.661312 TCAAGTAGGAGTATGTATGGCAAGT 59.339 40.000 0.00 0.00 0.00 3.16
1742 5257 6.156256 TCAAGTAGGAGTATGTATGGCAAGTT 59.844 38.462 0.00 0.00 0.00 2.66
1743 5258 7.343574 TCAAGTAGGAGTATGTATGGCAAGTTA 59.656 37.037 0.00 0.00 0.00 2.24
1752 5267 9.855021 AGTATGTATGGCAAGTTAAATTTTCAC 57.145 29.630 0.00 0.00 0.00 3.18
1755 5270 7.375053 TGTATGGCAAGTTAAATTTTCACCTC 58.625 34.615 0.00 0.00 0.00 3.85
1765 5280 9.918630 AGTTAAATTTTCACCTCATCTTTCATG 57.081 29.630 0.00 0.00 0.00 3.07
1805 5320 0.824109 TACCATCTCTGCTGTTCCCG 59.176 55.000 0.00 0.00 0.00 5.14
1863 5378 0.455464 CGACACCGCGACTTATGACA 60.455 55.000 8.23 0.00 0.00 3.58
1878 5393 1.946984 TGACACCGAGGGAAGGTATT 58.053 50.000 0.00 0.00 40.59 1.89
1886 5401 4.081254 ACCGAGGGAAGGTATTTAACTGAC 60.081 45.833 0.00 0.00 40.80 3.51
1899 5414 9.059260 GGTATTTAACTGACCAAACACTTTCTA 57.941 33.333 0.00 0.00 33.16 2.10
1918 5433 8.648693 ACTTTCTACCAGTAGTGTTAAGAATGT 58.351 33.333 13.70 13.70 34.84 2.71
1920 5435 8.827177 TTCTACCAGTAGTGTTAAGAATGTTG 57.173 34.615 4.81 0.00 34.84 3.33
1941 5456 4.758688 TGTGTGATCTGCTAGTTACATGG 58.241 43.478 0.00 0.00 0.00 3.66
1948 5463 1.436983 GCTAGTTACATGGCCGGCAC 61.437 60.000 30.85 16.91 0.00 5.01
2067 5584 0.612229 CCGGGAGATCTGGATGATGG 59.388 60.000 0.00 0.00 44.90 3.51
2072 5589 0.975135 AGATCTGGATGATGGCCGAG 59.025 55.000 0.00 0.00 35.14 4.63
2093 5610 3.118454 CAACGGCAGGCGAACGAT 61.118 61.111 25.17 0.00 0.00 3.73
2099 5616 1.643832 GCAGGCGAACGATCCATTC 59.356 57.895 0.00 0.00 0.00 2.67
2172 5689 2.420687 GCTCCATTCTCTCGGGTGAAAT 60.421 50.000 3.56 0.00 0.00 2.17
2188 5709 4.262164 GGTGAAATGGCAGAAATGTGTTCT 60.262 41.667 0.00 0.00 0.00 3.01
2189 5710 5.048083 GGTGAAATGGCAGAAATGTGTTCTA 60.048 40.000 0.00 0.00 0.00 2.10
2190 5711 6.446318 GTGAAATGGCAGAAATGTGTTCTAA 58.554 36.000 0.00 0.00 0.00 2.10
2191 5712 7.092716 GTGAAATGGCAGAAATGTGTTCTAAT 58.907 34.615 0.00 0.00 0.00 1.73
2273 5794 0.541392 TGTACATGCTCGCCAAGGAT 59.459 50.000 0.00 0.00 36.29 3.24
2324 5845 2.178521 CGCTGCTTCGACGGTAGT 59.821 61.111 0.00 0.00 0.00 2.73
2391 5913 1.915614 GCAGTAGCATGCAACGCTGT 61.916 55.000 21.98 7.98 45.77 4.40
2458 6001 5.376625 GCCTCATGTATTCCTACCATGAAA 58.623 41.667 0.00 0.00 31.27 2.69
2511 6064 5.560966 AGAAACACAGTCGTTTTCAATGT 57.439 34.783 0.00 0.00 39.17 2.71
2513 6066 5.799936 AGAAACACAGTCGTTTTCAATGTTG 59.200 36.000 0.00 0.00 39.17 3.33
2525 6078 9.959775 TCGTTTTCAATGTTGATTTTAAACAAC 57.040 25.926 12.46 12.46 40.69 3.32
2541 6094 9.615295 TTTTAAACAACAGTTTGTCTAACTCAC 57.385 29.630 4.02 0.00 45.69 3.51
2542 6095 6.811253 AAACAACAGTTTGTCTAACTCACA 57.189 33.333 0.00 0.00 45.69 3.58
2543 6096 7.391148 AAACAACAGTTTGTCTAACTCACAT 57.609 32.000 0.00 0.00 45.69 3.21
2544 6097 6.604735 ACAACAGTTTGTCTAACTCACATC 57.395 37.500 0.00 0.00 45.29 3.06
2545 6098 6.349300 ACAACAGTTTGTCTAACTCACATCT 58.651 36.000 0.00 0.00 45.29 2.90
2546 6099 7.497595 ACAACAGTTTGTCTAACTCACATCTA 58.502 34.615 0.00 0.00 45.29 1.98
2547 6100 7.653713 ACAACAGTTTGTCTAACTCACATCTAG 59.346 37.037 0.00 0.00 45.29 2.43
2548 6101 7.526142 ACAGTTTGTCTAACTCACATCTAGA 57.474 36.000 0.00 0.00 45.29 2.43
2549 6102 8.128322 ACAGTTTGTCTAACTCACATCTAGAT 57.872 34.615 0.00 0.00 45.29 1.98
2550 6103 8.031864 ACAGTTTGTCTAACTCACATCTAGATG 58.968 37.037 27.63 27.63 45.29 2.90
2551 6104 8.128322 AGTTTGTCTAACTCACATCTAGATGT 57.872 34.615 28.95 28.95 43.67 3.06
2552 6105 8.589338 AGTTTGTCTAACTCACATCTAGATGTT 58.411 33.333 31.39 20.91 45.14 2.71
2553 6106 9.209175 GTTTGTCTAACTCACATCTAGATGTTT 57.791 33.333 31.39 24.94 40.45 2.83
2577 6130 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
2578 6131 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
2579 6132 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
2580 6133 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
2581 6134 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
2582 6135 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
2583 6136 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
2584 6137 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
2585 6138 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
2586 6139 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
2587 6140 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
2588 6141 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
2589 6142 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
2590 6143 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
2591 6144 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
2594 6147 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
2595 6148 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
2596 6149 7.458409 AAGCTCCCACAAATATATAATGCAG 57.542 36.000 0.00 0.00 0.00 4.41
2597 6150 5.416952 AGCTCCCACAAATATATAATGCAGC 59.583 40.000 0.00 0.00 0.00 5.25
2598 6151 5.183713 GCTCCCACAAATATATAATGCAGCA 59.816 40.000 0.00 0.00 0.00 4.41
2599 6152 6.294675 GCTCCCACAAATATATAATGCAGCAA 60.295 38.462 0.00 0.00 0.00 3.91
2600 6153 6.980593 TCCCACAAATATATAATGCAGCAAC 58.019 36.000 0.00 0.00 0.00 4.17
2601 6154 6.548993 TCCCACAAATATATAATGCAGCAACA 59.451 34.615 0.00 0.00 0.00 3.33
2602 6155 7.069208 TCCCACAAATATATAATGCAGCAACAA 59.931 33.333 0.00 0.00 0.00 2.83
2603 6156 7.710044 CCCACAAATATATAATGCAGCAACAAA 59.290 33.333 0.00 0.00 0.00 2.83
2604 6157 9.096160 CCACAAATATATAATGCAGCAACAAAA 57.904 29.630 0.00 0.00 0.00 2.44
2656 6209 9.330063 CACAAATAAAGTGGATATCAGCTTAGA 57.670 33.333 4.83 1.36 33.43 2.10
2660 6213 9.499479 AATAAAGTGGATATCAGCTTAGATGTG 57.501 33.333 4.83 0.00 0.00 3.21
2661 6214 6.737720 AAGTGGATATCAGCTTAGATGTGA 57.262 37.500 4.83 0.00 0.00 3.58
2662 6215 6.095432 AGTGGATATCAGCTTAGATGTGAC 57.905 41.667 4.83 0.00 0.00 3.67
2663 6216 5.600069 AGTGGATATCAGCTTAGATGTGACA 59.400 40.000 4.83 0.00 0.00 3.58
2664 6217 6.269538 AGTGGATATCAGCTTAGATGTGACAT 59.730 38.462 0.00 0.00 0.00 3.06
2665 6218 7.452813 AGTGGATATCAGCTTAGATGTGACATA 59.547 37.037 4.83 0.00 0.00 2.29
2666 6219 8.090831 GTGGATATCAGCTTAGATGTGACATAA 58.909 37.037 4.83 0.00 0.00 1.90
2667 6220 8.090831 TGGATATCAGCTTAGATGTGACATAAC 58.909 37.037 4.83 0.00 0.00 1.89
2668 6221 8.310382 GGATATCAGCTTAGATGTGACATAACT 58.690 37.037 4.83 0.00 0.00 2.24
2690 6243 8.948401 AACTATGTCATATCTAGATGTGTCCT 57.052 34.615 23.88 15.89 32.61 3.85
2692 6245 9.679661 ACTATGTCATATCTAGATGTGTCCTAG 57.320 37.037 23.88 23.41 35.97 3.02
2693 6246 9.898152 CTATGTCATATCTAGATGTGTCCTAGA 57.102 37.037 23.88 8.33 44.50 2.43
2694 6247 7.987750 TGTCATATCTAGATGTGTCCTAGAC 57.012 40.000 23.88 15.91 43.57 2.59
2695 6248 7.518188 TGTCATATCTAGATGTGTCCTAGACA 58.482 38.462 23.88 17.81 43.57 3.41
2696 6249 7.663493 TGTCATATCTAGATGTGTCCTAGACAG 59.337 40.741 23.88 0.73 43.57 3.51
2697 6250 7.880713 GTCATATCTAGATGTGTCCTAGACAGA 59.119 40.741 23.88 0.00 43.57 3.41
2698 6251 7.880713 TCATATCTAGATGTGTCCTAGACAGAC 59.119 40.741 23.88 0.00 43.57 3.51
2699 6252 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
2700 6253 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
2701 6254 2.313342 AGATGTGTCCTAGACAGACCCT 59.687 50.000 0.00 0.00 43.57 4.34
2702 6255 2.696526 TGTGTCCTAGACAGACCCTT 57.303 50.000 0.00 0.00 43.57 3.95
2703 6256 2.972348 TGTGTCCTAGACAGACCCTTT 58.028 47.619 0.00 0.00 43.57 3.11
2704 6257 4.122337 TGTGTCCTAGACAGACCCTTTA 57.878 45.455 0.00 0.00 43.57 1.85
2705 6258 4.485875 TGTGTCCTAGACAGACCCTTTAA 58.514 43.478 0.00 0.00 43.57 1.52
2706 6259 4.903049 TGTGTCCTAGACAGACCCTTTAAA 59.097 41.667 0.00 0.00 43.57 1.52
2707 6260 5.221581 TGTGTCCTAGACAGACCCTTTAAAC 60.222 44.000 0.00 0.00 43.57 2.01
2708 6261 4.903049 TGTCCTAGACAGACCCTTTAAACA 59.097 41.667 0.00 0.00 37.67 2.83
2709 6262 5.367352 TGTCCTAGACAGACCCTTTAAACAA 59.633 40.000 0.00 0.00 37.67 2.83
2710 6263 6.043938 TGTCCTAGACAGACCCTTTAAACAAT 59.956 38.462 0.00 0.00 37.67 2.71
2711 6264 7.236019 TGTCCTAGACAGACCCTTTAAACAATA 59.764 37.037 0.00 0.00 37.67 1.90
2712 6265 8.098912 GTCCTAGACAGACCCTTTAAACAATAA 58.901 37.037 0.00 0.00 32.09 1.40
2713 6266 8.319146 TCCTAGACAGACCCTTTAAACAATAAG 58.681 37.037 0.00 0.00 0.00 1.73
2714 6267 7.553044 CCTAGACAGACCCTTTAAACAATAAGG 59.447 40.741 0.00 0.00 40.50 2.69
2715 6268 5.710567 AGACAGACCCTTTAAACAATAAGGC 59.289 40.000 0.00 0.00 39.68 4.35
2716 6269 5.641155 ACAGACCCTTTAAACAATAAGGCT 58.359 37.500 0.00 0.00 39.68 4.58
2717 6270 5.476945 ACAGACCCTTTAAACAATAAGGCTG 59.523 40.000 0.00 0.00 39.68 4.85
2718 6271 5.710099 CAGACCCTTTAAACAATAAGGCTGA 59.290 40.000 0.00 0.00 39.68 4.26
2719 6272 5.946377 AGACCCTTTAAACAATAAGGCTGAG 59.054 40.000 0.00 0.00 39.68 3.35
2720 6273 5.887754 ACCCTTTAAACAATAAGGCTGAGA 58.112 37.500 0.00 0.00 39.68 3.27
2721 6274 5.710567 ACCCTTTAAACAATAAGGCTGAGAC 59.289 40.000 0.00 0.00 39.68 3.36
2722 6275 5.946377 CCCTTTAAACAATAAGGCTGAGACT 59.054 40.000 0.00 0.00 39.68 3.24
2723 6276 6.127897 CCCTTTAAACAATAAGGCTGAGACTG 60.128 42.308 0.00 0.00 39.68 3.51
2724 6277 6.655003 CCTTTAAACAATAAGGCTGAGACTGA 59.345 38.462 0.00 0.00 34.96 3.41
2725 6278 7.337942 CCTTTAAACAATAAGGCTGAGACTGAT 59.662 37.037 0.00 0.00 34.96 2.90
2726 6279 8.635765 TTTAAACAATAAGGCTGAGACTGATT 57.364 30.769 0.00 0.00 0.00 2.57
2727 6280 6.506500 AAACAATAAGGCTGAGACTGATTG 57.493 37.500 21.52 21.52 0.00 2.67
2728 6281 3.944015 ACAATAAGGCTGAGACTGATTGC 59.056 43.478 22.77 0.00 0.00 3.56
2729 6282 3.920231 ATAAGGCTGAGACTGATTGCA 57.080 42.857 0.00 0.00 0.00 4.08
2730 6283 2.803030 AAGGCTGAGACTGATTGCAT 57.197 45.000 0.00 0.00 0.00 3.96
2731 6284 2.039818 AGGCTGAGACTGATTGCATG 57.960 50.000 0.00 0.00 0.00 4.06
2732 6285 1.022735 GGCTGAGACTGATTGCATGG 58.977 55.000 0.00 0.00 0.00 3.66
2733 6286 1.407851 GGCTGAGACTGATTGCATGGA 60.408 52.381 0.00 0.00 0.00 3.41
2734 6287 2.362736 GCTGAGACTGATTGCATGGAA 58.637 47.619 0.79 0.79 0.00 3.53
2735 6288 2.950309 GCTGAGACTGATTGCATGGAAT 59.050 45.455 12.76 12.76 0.00 3.01
2736 6289 3.380637 GCTGAGACTGATTGCATGGAATT 59.619 43.478 14.12 0.00 0.00 2.17
2737 6290 4.733815 GCTGAGACTGATTGCATGGAATTG 60.734 45.833 14.12 12.06 0.00 2.32
2738 6291 3.129813 TGAGACTGATTGCATGGAATTGC 59.870 43.478 14.12 2.90 43.07 3.56
2739 6292 2.429610 AGACTGATTGCATGGAATTGCC 59.570 45.455 14.12 2.18 42.06 4.52
2740 6293 1.135527 ACTGATTGCATGGAATTGCCG 59.864 47.619 14.12 5.70 42.06 5.69
2741 6294 0.179105 TGATTGCATGGAATTGCCGC 60.179 50.000 14.12 1.45 42.06 6.53
2742 6295 1.210545 GATTGCATGGAATTGCCGCG 61.211 55.000 14.12 0.00 42.06 6.46
2743 6296 2.632136 ATTGCATGGAATTGCCGCGG 62.632 55.000 24.05 24.05 42.06 6.46
2744 6297 4.573950 GCATGGAATTGCCGCGGG 62.574 66.667 29.38 8.95 40.66 6.13
2745 6298 3.140141 CATGGAATTGCCGCGGGT 61.140 61.111 29.38 0.00 40.66 5.28
2746 6299 2.362375 ATGGAATTGCCGCGGGTT 60.362 55.556 29.38 0.00 40.66 4.11
2747 6300 2.709883 ATGGAATTGCCGCGGGTTG 61.710 57.895 29.38 0.38 40.66 3.77
2748 6301 3.059386 GGAATTGCCGCGGGTTGA 61.059 61.111 29.38 0.00 0.00 3.18
2749 6302 2.485122 GAATTGCCGCGGGTTGAG 59.515 61.111 29.38 0.00 0.00 3.02
2750 6303 3.051392 GAATTGCCGCGGGTTGAGG 62.051 63.158 29.38 0.00 41.15 3.86
2751 6304 3.860930 AATTGCCGCGGGTTGAGGT 62.861 57.895 29.38 0.00 40.18 3.85
2752 6305 2.472414 AATTGCCGCGGGTTGAGGTA 62.472 55.000 29.38 0.00 40.18 3.08
2753 6306 3.887335 TTGCCGCGGGTTGAGGTAC 62.887 63.158 29.38 7.00 40.18 3.34
2755 6308 4.807039 CCGCGGGTTGAGGTACGG 62.807 72.222 20.10 0.00 31.96 4.02
2758 6311 4.462280 CGGGTTGAGGTACGGCCC 62.462 72.222 0.00 0.00 38.26 5.80
2759 6312 3.324108 GGGTTGAGGTACGGCCCA 61.324 66.667 0.00 0.00 39.13 5.36
2760 6313 2.751688 GGTTGAGGTACGGCCCAA 59.248 61.111 0.00 0.00 38.26 4.12
2761 6314 1.673337 GGTTGAGGTACGGCCCAAC 60.673 63.158 10.76 10.76 42.52 3.77
2762 6315 1.071814 GTTGAGGTACGGCCCAACA 59.928 57.895 13.46 7.58 42.66 3.33
2763 6316 0.535553 GTTGAGGTACGGCCCAACAA 60.536 55.000 13.46 11.42 42.66 2.83
2764 6317 0.402504 TTGAGGTACGGCCCAACAAT 59.597 50.000 0.00 0.00 38.26 2.71
2765 6318 0.402504 TGAGGTACGGCCCAACAATT 59.597 50.000 0.00 0.00 38.26 2.32
2766 6319 1.202952 TGAGGTACGGCCCAACAATTT 60.203 47.619 0.00 0.00 38.26 1.82
2767 6320 1.201414 GAGGTACGGCCCAACAATTTG 59.799 52.381 0.00 0.00 38.26 2.32
2768 6321 0.389296 GGTACGGCCCAACAATTTGC 60.389 55.000 0.00 0.00 0.00 3.68
2769 6322 0.315568 GTACGGCCCAACAATTTGCA 59.684 50.000 0.00 0.00 0.00 4.08
2770 6323 1.067213 GTACGGCCCAACAATTTGCAT 60.067 47.619 0.00 0.00 0.00 3.96
2771 6324 0.396060 ACGGCCCAACAATTTGCATT 59.604 45.000 0.00 0.00 0.00 3.56
2772 6325 1.077915 CGGCCCAACAATTTGCATTC 58.922 50.000 0.00 0.00 0.00 2.67
2773 6326 1.338011 CGGCCCAACAATTTGCATTCT 60.338 47.619 0.00 0.00 0.00 2.40
2774 6327 2.349590 GGCCCAACAATTTGCATTCTC 58.650 47.619 0.00 0.00 0.00 2.87
2775 6328 2.027837 GGCCCAACAATTTGCATTCTCT 60.028 45.455 0.00 0.00 0.00 3.10
2776 6329 2.997986 GCCCAACAATTTGCATTCTCTG 59.002 45.455 0.00 0.00 0.00 3.35
2777 6330 3.306225 GCCCAACAATTTGCATTCTCTGA 60.306 43.478 0.00 0.00 0.00 3.27
2778 6331 4.800249 GCCCAACAATTTGCATTCTCTGAA 60.800 41.667 0.00 0.00 0.00 3.02
2779 6332 5.299148 CCCAACAATTTGCATTCTCTGAAA 58.701 37.500 0.00 0.00 0.00 2.69
2780 6333 5.178067 CCCAACAATTTGCATTCTCTGAAAC 59.822 40.000 0.00 0.00 0.00 2.78
2781 6334 5.987347 CCAACAATTTGCATTCTCTGAAACT 59.013 36.000 0.00 0.00 0.00 2.66
2782 6335 6.145048 CCAACAATTTGCATTCTCTGAAACTC 59.855 38.462 0.00 0.00 0.00 3.01
2783 6336 5.776744 ACAATTTGCATTCTCTGAAACTCC 58.223 37.500 0.00 0.00 0.00 3.85
2784 6337 5.302568 ACAATTTGCATTCTCTGAAACTCCA 59.697 36.000 0.00 0.00 0.00 3.86
2785 6338 5.640189 ATTTGCATTCTCTGAAACTCCAG 57.360 39.130 0.00 0.00 35.55 3.86
2786 6339 4.356405 TTGCATTCTCTGAAACTCCAGA 57.644 40.909 0.00 0.00 40.57 3.86
2787 6340 4.356405 TGCATTCTCTGAAACTCCAGAA 57.644 40.909 0.00 0.00 42.05 3.02
2788 6341 4.321718 TGCATTCTCTGAAACTCCAGAAG 58.678 43.478 0.00 0.00 42.05 2.85
2789 6342 3.688673 GCATTCTCTGAAACTCCAGAAGG 59.311 47.826 0.00 0.00 42.05 3.46
2790 6343 4.564406 GCATTCTCTGAAACTCCAGAAGGA 60.564 45.833 0.00 0.00 42.05 3.36
2798 6351 3.293821 TCCAGAAGGAGGACCCCA 58.706 61.111 2.29 0.00 39.61 4.96
2799 6352 1.229529 TCCAGAAGGAGGACCCCAC 60.230 63.158 2.29 0.00 39.61 4.61
2800 6353 1.538876 CCAGAAGGAGGACCCCACA 60.539 63.158 2.29 0.00 36.89 4.17
2801 6354 0.916358 CCAGAAGGAGGACCCCACAT 60.916 60.000 2.29 0.00 36.89 3.21
2802 6355 1.625228 CCAGAAGGAGGACCCCACATA 60.625 57.143 2.29 0.00 36.89 2.29
2803 6356 1.486726 CAGAAGGAGGACCCCACATAC 59.513 57.143 2.29 0.00 36.73 2.39
2804 6357 1.366435 AGAAGGAGGACCCCACATACT 59.634 52.381 2.29 0.00 36.73 2.12
2805 6358 2.197465 GAAGGAGGACCCCACATACTT 58.803 52.381 2.29 0.00 36.73 2.24
2806 6359 2.361085 AGGAGGACCCCACATACTTT 57.639 50.000 2.29 0.00 36.73 2.66
2807 6360 2.644151 AGGAGGACCCCACATACTTTT 58.356 47.619 2.29 0.00 36.73 2.27
2808 6361 2.993863 AGGAGGACCCCACATACTTTTT 59.006 45.455 2.29 0.00 36.73 1.94
2838 6391 2.159382 ACGAAGTTAGGCCATGTTTGG 58.841 47.619 5.01 0.00 37.78 3.28
2839 6392 2.159382 CGAAGTTAGGCCATGTTTGGT 58.841 47.619 5.01 0.00 45.57 3.67
2840 6393 3.244630 ACGAAGTTAGGCCATGTTTGGTA 60.245 43.478 5.01 0.00 41.96 3.25
2841 6394 3.126343 CGAAGTTAGGCCATGTTTGGTAC 59.874 47.826 5.01 0.00 45.57 3.34
2842 6395 3.799432 AGTTAGGCCATGTTTGGTACA 57.201 42.857 5.01 0.00 45.57 2.90
2880 6433 1.250328 TTAACGAGCACTCCTTCGGA 58.750 50.000 0.00 0.00 0.00 4.55
2889 6442 1.298014 CTCCTTCGGAAGCCTTGCT 59.702 57.895 12.29 0.00 42.56 3.91
2892 6445 0.250513 CCTTCGGAAGCCTTGCTACT 59.749 55.000 12.29 0.00 38.25 2.57
2893 6446 1.339151 CCTTCGGAAGCCTTGCTACTT 60.339 52.381 12.29 0.00 38.25 2.24
2897 6450 2.151202 CGGAAGCCTTGCTACTTTCAA 58.849 47.619 0.00 0.00 38.25 2.69
2904 6457 2.869801 CCTTGCTACTTTCAACGTCACA 59.130 45.455 0.00 0.00 0.00 3.58
2915 6468 4.505217 CGTCACATGGCGCGCTTC 62.505 66.667 32.29 16.28 35.94 3.86
2968 6522 4.744631 CACTCCCTCCGAATTTTGTTTTTG 59.255 41.667 0.00 0.00 0.00 2.44
3037 6594 1.941975 TCGGGGTTTTTCTGACGTTTC 59.058 47.619 0.00 0.00 0.00 2.78
3057 6614 2.845363 GGTTTTCACCGGTCTTCCTA 57.155 50.000 2.59 0.00 31.60 2.94
3065 6622 4.131596 TCACCGGTCTTCCTAAACTTTTG 58.868 43.478 2.59 0.00 0.00 2.44
3071 6629 5.077564 GGTCTTCCTAAACTTTTGGACCAT 58.922 41.667 4.37 0.00 40.89 3.55
3167 6735 2.966309 GCGAGAGGCACGGTTTTGG 61.966 63.158 0.00 0.00 42.87 3.28
3244 6826 2.559698 TTCCTTCATCGAAAGGCACA 57.440 45.000 10.53 0.00 44.66 4.57
3245 6827 2.787473 TCCTTCATCGAAAGGCACAT 57.213 45.000 10.53 0.00 44.66 3.21
3257 6839 1.327303 AGGCACATTTTTGCTTCCGA 58.673 45.000 0.00 0.00 42.56 4.55
3266 6848 1.909700 TTTGCTTCCGAGAAAGGCAT 58.090 45.000 0.00 0.00 0.00 4.40
3370 6957 1.228657 GGTTTTGCTTCCGCGAGAGT 61.229 55.000 8.23 0.00 39.65 3.24
3386 6973 1.134521 AGAGTCACGGTTGTGCTTTCA 60.135 47.619 0.00 0.00 46.01 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.971695 CCCTTTTGTCGGTGCCTCC 60.972 63.158 0.00 0.00 0.00 4.30
118 119 3.742882 TGCAGATTTCATAGCATAGCGAC 59.257 43.478 0.00 0.00 31.05 5.19
208 214 3.637297 CCGTAACGAAGGCCTCTAC 57.363 57.895 5.23 4.96 0.00 2.59
320 1096 0.108963 TGTTCTAAACACACCCCGGG 59.891 55.000 15.80 15.80 36.25 5.73
322 1098 1.202722 ACCTGTTCTAAACACACCCCG 60.203 52.381 0.00 0.00 36.25 5.73
323 1099 2.651382 ACCTGTTCTAAACACACCCC 57.349 50.000 0.00 0.00 36.25 4.95
324 1100 4.457949 CCATTACCTGTTCTAAACACACCC 59.542 45.833 0.00 0.00 36.25 4.61
325 1101 5.310451 TCCATTACCTGTTCTAAACACACC 58.690 41.667 0.00 0.00 36.25 4.16
326 1102 5.995897 ACTCCATTACCTGTTCTAAACACAC 59.004 40.000 0.00 0.00 36.25 3.82
349 1140 5.095490 CAGACTCCAACACTGAAACAAAAC 58.905 41.667 0.00 0.00 34.07 2.43
370 1161 2.496817 GCGGCTAGGAGGTGACAG 59.503 66.667 0.00 0.00 0.00 3.51
435 1226 4.094146 GCCTCTCCTTCTTTTCTTTCATCG 59.906 45.833 0.00 0.00 0.00 3.84
440 1231 4.349342 TCTGAGCCTCTCCTTCTTTTCTTT 59.651 41.667 0.00 0.00 0.00 2.52
442 1233 3.260632 GTCTGAGCCTCTCCTTCTTTTCT 59.739 47.826 0.00 0.00 0.00 2.52
443 1234 3.260632 AGTCTGAGCCTCTCCTTCTTTTC 59.739 47.826 0.00 0.00 0.00 2.29
444 1235 3.007831 CAGTCTGAGCCTCTCCTTCTTTT 59.992 47.826 0.00 0.00 0.00 2.27
445 1236 2.566724 CAGTCTGAGCCTCTCCTTCTTT 59.433 50.000 0.00 0.00 0.00 2.52
446 1237 2.178580 CAGTCTGAGCCTCTCCTTCTT 58.821 52.381 0.00 0.00 0.00 2.52
447 1238 1.357420 TCAGTCTGAGCCTCTCCTTCT 59.643 52.381 0.00 0.00 0.00 2.85
448 1239 1.750778 CTCAGTCTGAGCCTCTCCTTC 59.249 57.143 16.81 0.00 37.72 3.46
449 1240 1.851304 CTCAGTCTGAGCCTCTCCTT 58.149 55.000 16.81 0.00 37.72 3.36
450 1241 3.594453 CTCAGTCTGAGCCTCTCCT 57.406 57.895 16.81 0.00 37.72 3.69
468 1378 2.867429 CAAGCCACCGATGAAATGAAC 58.133 47.619 0.00 0.00 0.00 3.18
469 1379 1.202114 GCAAGCCACCGATGAAATGAA 59.798 47.619 0.00 0.00 0.00 2.57
481 1391 1.852895 CTCGTTCGTATAGCAAGCCAC 59.147 52.381 0.00 0.00 0.00 5.01
492 1402 2.674852 AGCAATAGTCGTCTCGTTCGTA 59.325 45.455 0.00 0.00 0.00 3.43
493 1403 1.467734 AGCAATAGTCGTCTCGTTCGT 59.532 47.619 0.00 0.00 0.00 3.85
494 1404 2.175530 AGCAATAGTCGTCTCGTTCG 57.824 50.000 0.00 0.00 0.00 3.95
495 1405 9.557338 AATATATAAGCAATAGTCGTCTCGTTC 57.443 33.333 0.00 0.00 0.00 3.95
496 1406 9.343103 CAATATATAAGCAATAGTCGTCTCGTT 57.657 33.333 0.00 0.00 0.00 3.85
508 1418 5.699001 TCGAACCGTGCAATATATAAGCAAT 59.301 36.000 12.72 2.16 40.35 3.56
591 1501 1.341383 ACAAGGATGGCAGGTGATTCC 60.341 52.381 0.00 0.00 0.00 3.01
594 1504 1.134401 CGTACAAGGATGGCAGGTGAT 60.134 52.381 0.00 0.00 0.00 3.06
600 2766 1.003118 AGAAAGCGTACAAGGATGGCA 59.997 47.619 0.00 0.00 0.00 4.92
624 2790 2.003301 GAGGGAAGCGTAAAGAAGCAG 58.997 52.381 0.00 0.00 35.48 4.24
640 2806 0.322008 GAGGTGTCAAGCAAGGAGGG 60.322 60.000 0.00 0.00 0.00 4.30
655 2821 0.818296 GTATCGTGCTGACAGGAGGT 59.182 55.000 15.09 6.74 43.43 3.85
678 4071 4.318831 GCAAAAGTAAACGAGAGGTGTCAG 60.319 45.833 0.00 0.00 0.00 3.51
682 4075 2.096417 CCGCAAAAGTAAACGAGAGGTG 60.096 50.000 0.00 0.00 0.00 4.00
683 4076 2.140717 CCGCAAAAGTAAACGAGAGGT 58.859 47.619 0.00 0.00 0.00 3.85
684 4077 1.463444 CCCGCAAAAGTAAACGAGAGG 59.537 52.381 0.00 0.00 0.00 3.69
685 4078 2.157085 GTCCCGCAAAAGTAAACGAGAG 59.843 50.000 0.00 0.00 0.00 3.20
686 4079 2.137523 GTCCCGCAAAAGTAAACGAGA 58.862 47.619 0.00 0.00 0.00 4.04
687 4080 1.136446 CGTCCCGCAAAAGTAAACGAG 60.136 52.381 0.00 0.00 0.00 4.18
689 4082 0.110554 CCGTCCCGCAAAAGTAAACG 60.111 55.000 0.00 0.00 0.00 3.60
690 4083 0.239082 CCCGTCCCGCAAAAGTAAAC 59.761 55.000 0.00 0.00 0.00 2.01
761 4159 0.640768 GCACTCGTTCACGACATAGC 59.359 55.000 0.00 0.00 44.22 2.97
784 4241 1.276415 CAAACGTGGTGGCTTTTGTG 58.724 50.000 0.00 0.00 0.00 3.33
843 4300 3.106407 GTGTGCTGACTCGTCCGC 61.106 66.667 6.53 6.53 39.75 5.54
949 4420 4.584518 TATACGGGGCGAGGGCGA 62.585 66.667 0.00 0.00 41.24 5.54
950 4421 3.569049 CTTATACGGGGCGAGGGCG 62.569 68.421 0.00 0.00 41.24 6.13
951 4422 1.751349 TTCTTATACGGGGCGAGGGC 61.751 60.000 0.00 0.00 38.90 5.19
952 4423 0.317479 CTTCTTATACGGGGCGAGGG 59.683 60.000 0.00 0.00 0.00 4.30
953 4424 1.269998 CTCTTCTTATACGGGGCGAGG 59.730 57.143 0.00 0.00 0.00 4.63
954 4425 1.336056 GCTCTTCTTATACGGGGCGAG 60.336 57.143 0.00 0.00 0.00 5.03
955 4426 0.672342 GCTCTTCTTATACGGGGCGA 59.328 55.000 0.00 0.00 0.00 5.54
956 4427 0.387929 TGCTCTTCTTATACGGGGCG 59.612 55.000 0.00 0.00 0.00 6.13
957 4428 1.687123 TCTGCTCTTCTTATACGGGGC 59.313 52.381 0.00 0.00 0.00 5.80
958 4429 3.243907 CCTTCTGCTCTTCTTATACGGGG 60.244 52.174 0.00 0.00 0.00 5.73
959 4430 3.800604 GCCTTCTGCTCTTCTTATACGGG 60.801 52.174 0.00 0.00 36.87 5.28
960 4431 3.385577 GCCTTCTGCTCTTCTTATACGG 58.614 50.000 0.00 0.00 36.87 4.02
1001 4476 1.152567 AATGGTGGGTGGGTGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
1002 4477 1.152567 CAATGGTGGGTGGGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
1003 4478 0.251742 ATCAATGGTGGGTGGGTGTG 60.252 55.000 0.00 0.00 0.00 3.82
1004 4479 0.039618 GATCAATGGTGGGTGGGTGT 59.960 55.000 0.00 0.00 0.00 4.16
1005 4480 0.684153 GGATCAATGGTGGGTGGGTG 60.684 60.000 0.00 0.00 0.00 4.61
1006 4481 1.145900 TGGATCAATGGTGGGTGGGT 61.146 55.000 0.00 0.00 0.00 4.51
1007 4482 0.262580 ATGGATCAATGGTGGGTGGG 59.737 55.000 0.00 0.00 0.00 4.61
1008 4483 1.696063 GATGGATCAATGGTGGGTGG 58.304 55.000 0.00 0.00 0.00 4.61
1012 4487 0.466007 TGCGGATGGATCAATGGTGG 60.466 55.000 0.00 0.00 0.00 4.61
1071 4548 3.008517 TTGCCTCCTCCGCCATGA 61.009 61.111 0.00 0.00 0.00 3.07
1210 4700 1.748591 GCAGCCACAGGGGAAGAATAG 60.749 57.143 0.00 0.00 40.01 1.73
1239 4729 1.436983 GGCCTGTAAGAATTCGCCGG 61.437 60.000 0.00 0.00 34.07 6.13
1365 4855 1.371389 GTCGAAGAAGGCGACGTGT 60.371 57.895 0.00 0.00 46.85 4.49
1522 5037 0.322008 CCCTCAGTCCTGAAACCAGC 60.322 60.000 0.00 0.00 39.39 4.85
1571 5086 0.810648 TGAATGGCCATTGCGAAGAC 59.189 50.000 35.31 18.67 38.85 3.01
1574 5089 0.179105 GCATGAATGGCCATTGCGAA 60.179 50.000 35.31 17.54 38.85 4.70
1582 5097 0.179009 TGAGGCTAGCATGAATGGCC 60.179 55.000 18.24 15.29 42.74 5.36
1584 5099 1.236628 GCTGAGGCTAGCATGAATGG 58.763 55.000 18.24 0.00 43.17 3.16
1596 5111 1.719600 CAGAGTTGTGTAGCTGAGGC 58.280 55.000 0.00 0.00 39.06 4.70
1600 5115 2.420642 ACATGCAGAGTTGTGTAGCTG 58.579 47.619 0.00 0.00 0.00 4.24
1628 5143 7.979444 TCTCGAGTTAATTCTGACCATTTTT 57.021 32.000 13.13 0.00 0.00 1.94
1629 5144 7.979444 TTCTCGAGTTAATTCTGACCATTTT 57.021 32.000 13.13 0.00 0.00 1.82
1652 5167 0.038166 ACCGTGGAGGATGCATGTTT 59.962 50.000 2.46 0.00 42.44 2.83
1655 5170 1.524621 GGACCGTGGAGGATGCATG 60.525 63.158 2.46 0.00 39.99 4.06
1656 5171 2.746375 GGGACCGTGGAGGATGCAT 61.746 63.158 0.00 0.00 39.99 3.96
1657 5172 3.399181 GGGACCGTGGAGGATGCA 61.399 66.667 0.00 0.00 45.00 3.96
1658 5173 4.176752 GGGGACCGTGGAGGATGC 62.177 72.222 0.00 0.00 45.00 3.91
1683 5198 3.594603 ACGATAGGGTATGCTGTATGC 57.405 47.619 0.00 0.00 43.77 3.14
1686 5201 5.247862 TCGAATACGATAGGGTATGCTGTA 58.752 41.667 0.00 0.00 43.81 2.74
1687 5202 4.077108 TCGAATACGATAGGGTATGCTGT 58.923 43.478 0.00 0.00 43.81 4.40
1688 5203 4.696899 TCGAATACGATAGGGTATGCTG 57.303 45.455 0.00 0.00 43.81 4.41
1709 5224 9.383519 CATACATACTCCTACTTGACAAAATGT 57.616 33.333 0.00 0.00 0.00 2.71
1711 5226 7.499232 GCCATACATACTCCTACTTGACAAAAT 59.501 37.037 0.00 0.00 0.00 1.82
1713 5228 6.070481 TGCCATACATACTCCTACTTGACAAA 60.070 38.462 0.00 0.00 0.00 2.83
1715 5230 4.959839 TGCCATACATACTCCTACTTGACA 59.040 41.667 0.00 0.00 0.00 3.58
1716 5231 5.531122 TGCCATACATACTCCTACTTGAC 57.469 43.478 0.00 0.00 0.00 3.18
1717 5232 5.661312 ACTTGCCATACATACTCCTACTTGA 59.339 40.000 0.00 0.00 0.00 3.02
1718 5233 5.918608 ACTTGCCATACATACTCCTACTTG 58.081 41.667 0.00 0.00 0.00 3.16
1719 5234 6.561519 AACTTGCCATACATACTCCTACTT 57.438 37.500 0.00 0.00 0.00 2.24
1721 5236 8.904099 ATTTAACTTGCCATACATACTCCTAC 57.096 34.615 0.00 0.00 0.00 3.18
1722 5237 9.914834 AAATTTAACTTGCCATACATACTCCTA 57.085 29.630 0.00 0.00 0.00 2.94
1723 5238 8.823220 AAATTTAACTTGCCATACATACTCCT 57.177 30.769 0.00 0.00 0.00 3.69
1724 5239 9.516314 GAAAATTTAACTTGCCATACATACTCC 57.484 33.333 0.00 0.00 0.00 3.85
1726 5241 9.855021 GTGAAAATTTAACTTGCCATACATACT 57.145 29.630 0.00 0.00 0.00 2.12
1727 5242 9.083080 GGTGAAAATTTAACTTGCCATACATAC 57.917 33.333 0.00 0.00 0.00 2.39
1728 5243 9.030452 AGGTGAAAATTTAACTTGCCATACATA 57.970 29.630 0.00 0.00 0.00 2.29
1729 5244 7.906327 AGGTGAAAATTTAACTTGCCATACAT 58.094 30.769 0.00 0.00 0.00 2.29
1730 5245 7.014711 TGAGGTGAAAATTTAACTTGCCATACA 59.985 33.333 0.00 0.00 0.00 2.29
1731 5246 7.375053 TGAGGTGAAAATTTAACTTGCCATAC 58.625 34.615 0.00 0.00 0.00 2.39
1732 5247 7.531857 TGAGGTGAAAATTTAACTTGCCATA 57.468 32.000 0.00 0.00 0.00 2.74
1733 5248 6.418057 TGAGGTGAAAATTTAACTTGCCAT 57.582 33.333 0.00 0.00 0.00 4.40
1734 5249 5.860941 TGAGGTGAAAATTTAACTTGCCA 57.139 34.783 0.00 0.00 0.00 4.92
1735 5250 6.691508 AGATGAGGTGAAAATTTAACTTGCC 58.308 36.000 0.00 0.00 0.00 4.52
1736 5251 8.593492 AAAGATGAGGTGAAAATTTAACTTGC 57.407 30.769 0.00 0.00 0.00 4.01
1737 5252 9.748708 TGAAAGATGAGGTGAAAATTTAACTTG 57.251 29.630 0.00 0.00 0.00 3.16
1739 5254 9.918630 CATGAAAGATGAGGTGAAAATTTAACT 57.081 29.630 0.00 0.00 0.00 2.24
1740 5255 9.143631 CCATGAAAGATGAGGTGAAAATTTAAC 57.856 33.333 0.00 0.00 0.00 2.01
1741 5256 7.818930 GCCATGAAAGATGAGGTGAAAATTTAA 59.181 33.333 0.00 0.00 0.00 1.52
1742 5257 7.178983 AGCCATGAAAGATGAGGTGAAAATTTA 59.821 33.333 0.00 0.00 0.00 1.40
1743 5258 6.013984 AGCCATGAAAGATGAGGTGAAAATTT 60.014 34.615 0.00 0.00 0.00 1.82
1752 5267 1.590932 CGGAGCCATGAAAGATGAGG 58.409 55.000 0.00 0.00 0.00 3.86
1755 5270 1.303309 GTCCGGAGCCATGAAAGATG 58.697 55.000 3.06 0.00 0.00 2.90
1805 5320 4.682787 TGTGGATGTTGTCGATGTAGATC 58.317 43.478 0.00 0.00 0.00 2.75
1863 5378 4.081254 GTCAGTTAAATACCTTCCCTCGGT 60.081 45.833 0.00 0.00 38.55 4.69
1878 5393 6.416415 TGGTAGAAAGTGTTTGGTCAGTTAA 58.584 36.000 0.00 0.00 31.72 2.01
1886 5401 5.924475 CACTACTGGTAGAAAGTGTTTGG 57.076 43.478 13.83 0.00 35.66 3.28
1899 5414 6.260050 CACACAACATTCTTAACACTACTGGT 59.740 38.462 0.00 0.00 0.00 4.00
1909 5424 7.161404 ACTAGCAGATCACACAACATTCTTAA 58.839 34.615 0.00 0.00 0.00 1.85
1918 5433 5.178061 CCATGTAACTAGCAGATCACACAA 58.822 41.667 0.00 0.00 0.00 3.33
1920 5435 3.557595 GCCATGTAACTAGCAGATCACAC 59.442 47.826 0.00 0.00 0.00 3.82
1948 5463 5.116528 GCATTCATTCACAATCGCACATATG 59.883 40.000 0.00 0.00 0.00 1.78
1962 5477 7.817478 CGGTATGTACCTATAAGCATTCATTCA 59.183 37.037 7.56 0.00 44.25 2.57
1963 5478 7.277981 CCGGTATGTACCTATAAGCATTCATTC 59.722 40.741 7.56 0.00 44.25 2.67
1964 5479 7.103641 CCGGTATGTACCTATAAGCATTCATT 58.896 38.462 7.56 0.00 44.25 2.57
1965 5480 6.212791 ACCGGTATGTACCTATAAGCATTCAT 59.787 38.462 4.49 0.00 44.25 2.57
1985 5502 0.748450 TGTTCTCGAAGTTCACCGGT 59.252 50.000 0.00 0.00 0.00 5.28
2099 5616 4.390603 TGTAAAACGAAATCAGACCATCCG 59.609 41.667 0.00 0.00 0.00 4.18
2172 5689 8.347004 TCATTAATTAGAACACATTTCTGCCA 57.653 30.769 0.00 0.00 0.00 4.92
2190 5711 9.881773 ACAAGTACCCATGGATTTATCATTAAT 57.118 29.630 15.22 0.00 0.00 1.40
2191 5712 9.707957 AACAAGTACCCATGGATTTATCATTAA 57.292 29.630 15.22 0.00 0.00 1.40
2239 5760 0.807667 GTACAGCAGCATCCACTCCG 60.808 60.000 0.00 0.00 0.00 4.63
2273 5794 1.612442 CGGAAGGTTCCCCTCCTCA 60.612 63.158 3.08 0.00 44.67 3.86
2391 5913 2.582436 GAAGACATTCCGGGCCGA 59.418 61.111 30.79 9.12 0.00 5.54
2458 6001 6.663093 TGATGAAACTGGGCACAACTTATTAT 59.337 34.615 0.00 0.00 0.00 1.28
2525 6078 8.404889 CATCTAGATGTGAGTTAGACAAACTG 57.595 38.462 22.42 0.00 39.93 3.16
2552 6105 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
2553 6106 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
2554 6107 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
2555 6108 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
2556 6109 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
2557 6110 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
2558 6111 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
2559 6112 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
2560 6113 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
2561 6114 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
2562 6115 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
2563 6116 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
2564 6117 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
2565 6118 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
2568 6121 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
2569 6122 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
2570 6123 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
2571 6124 7.121168 GCTGCATTATATATTTGTGGGAGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
2572 6125 6.071728 GCTGCATTATATATTTGTGGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
2573 6126 5.416952 GCTGCATTATATATTTGTGGGAGCT 59.583 40.000 0.00 0.00 0.00 4.09
2574 6127 5.183713 TGCTGCATTATATATTTGTGGGAGC 59.816 40.000 0.00 0.00 0.00 4.70
2575 6128 6.822667 TGCTGCATTATATATTTGTGGGAG 57.177 37.500 0.00 0.00 0.00 4.30
2576 6129 6.548993 TGTTGCTGCATTATATATTTGTGGGA 59.451 34.615 1.84 0.00 0.00 4.37
2577 6130 6.747125 TGTTGCTGCATTATATATTTGTGGG 58.253 36.000 1.84 0.00 0.00 4.61
2578 6131 8.645730 TTTGTTGCTGCATTATATATTTGTGG 57.354 30.769 1.84 0.00 0.00 4.17
2630 6183 9.330063 TCTAAGCTGATATCCACTTTATTTGTG 57.670 33.333 11.34 0.00 35.39 3.33
2634 6187 9.499479 CACATCTAAGCTGATATCCACTTTATT 57.501 33.333 11.34 0.00 0.00 1.40
2635 6188 8.874156 TCACATCTAAGCTGATATCCACTTTAT 58.126 33.333 11.34 5.21 0.00 1.40
2636 6189 8.144478 GTCACATCTAAGCTGATATCCACTTTA 58.856 37.037 11.34 3.51 0.00 1.85
2637 6190 6.989169 GTCACATCTAAGCTGATATCCACTTT 59.011 38.462 11.34 0.02 0.00 2.66
2638 6191 6.098838 TGTCACATCTAAGCTGATATCCACTT 59.901 38.462 10.98 10.98 0.00 3.16
2639 6192 5.600069 TGTCACATCTAAGCTGATATCCACT 59.400 40.000 0.00 0.00 0.00 4.00
2640 6193 5.847304 TGTCACATCTAAGCTGATATCCAC 58.153 41.667 0.00 0.00 0.00 4.02
2641 6194 6.676990 ATGTCACATCTAAGCTGATATCCA 57.323 37.500 0.00 0.00 0.00 3.41
2642 6195 8.310382 AGTTATGTCACATCTAAGCTGATATCC 58.690 37.037 0.00 0.00 0.00 2.59
2646 6199 8.646004 ACATAGTTATGTCACATCTAAGCTGAT 58.354 33.333 0.00 0.00 42.96 2.90
2647 6200 8.011844 ACATAGTTATGTCACATCTAAGCTGA 57.988 34.615 0.00 0.00 42.96 4.26
2665 6218 8.948401 AGGACACATCTAGATATGACATAGTT 57.052 34.615 17.82 0.00 0.00 2.24
2666 6219 9.679661 CTAGGACACATCTAGATATGACATAGT 57.320 37.037 19.89 5.05 37.08 2.12
2667 6220 9.898152 TCTAGGACACATCTAGATATGACATAG 57.102 37.037 21.26 21.26 38.50 2.23
2668 6221 9.674068 GTCTAGGACACATCTAGATATGACATA 57.326 37.037 17.82 12.01 43.25 2.29
2669 6222 8.166726 TGTCTAGGACACATCTAGATATGACAT 58.833 37.037 17.82 11.49 43.25 3.06
2670 6223 7.518188 TGTCTAGGACACATCTAGATATGACA 58.482 38.462 17.82 7.35 43.25 3.58
2671 6224 7.880713 TCTGTCTAGGACACATCTAGATATGAC 59.119 40.741 17.82 11.19 43.25 3.06
2672 6225 7.880713 GTCTGTCTAGGACACATCTAGATATGA 59.119 40.741 17.82 0.00 43.25 2.15
2673 6226 7.120579 GGTCTGTCTAGGACACATCTAGATATG 59.879 44.444 9.51 9.51 43.25 1.78
2674 6227 7.172342 GGTCTGTCTAGGACACATCTAGATAT 58.828 42.308 4.54 0.00 43.25 1.63
2675 6228 6.466038 GGGTCTGTCTAGGACACATCTAGATA 60.466 46.154 4.54 1.80 43.25 1.98
2676 6229 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
2677 6230 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
2678 6231 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
2679 6232 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
2680 6233 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
2681 6234 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
2682 6235 2.930109 AGGGTCTGTCTAGGACACAT 57.070 50.000 3.18 0.00 39.36 3.21
2683 6236 2.696526 AAGGGTCTGTCTAGGACACA 57.303 50.000 3.18 0.00 39.36 3.72
2684 6237 5.221581 TGTTTAAAGGGTCTGTCTAGGACAC 60.222 44.000 0.00 0.00 37.67 3.67
2685 6238 4.903049 TGTTTAAAGGGTCTGTCTAGGACA 59.097 41.667 0.43 0.43 40.50 4.02
2686 6239 5.479124 TGTTTAAAGGGTCTGTCTAGGAC 57.521 43.478 0.00 0.00 0.00 3.85
2687 6240 6.697641 ATTGTTTAAAGGGTCTGTCTAGGA 57.302 37.500 0.00 0.00 0.00 2.94
2688 6241 7.553044 CCTTATTGTTTAAAGGGTCTGTCTAGG 59.447 40.741 0.00 0.00 38.91 3.02
2689 6242 7.065923 GCCTTATTGTTTAAAGGGTCTGTCTAG 59.934 40.741 3.48 0.00 42.19 2.43
2690 6243 6.882678 GCCTTATTGTTTAAAGGGTCTGTCTA 59.117 38.462 3.48 0.00 42.19 2.59
2691 6244 5.710567 GCCTTATTGTTTAAAGGGTCTGTCT 59.289 40.000 3.48 0.00 42.19 3.41
2692 6245 5.950883 GCCTTATTGTTTAAAGGGTCTGTC 58.049 41.667 3.48 0.00 42.19 3.51
2693 6246 5.977489 GCCTTATTGTTTAAAGGGTCTGT 57.023 39.130 3.48 0.00 42.19 3.41
2698 6251 5.946377 AGTCTCAGCCTTATTGTTTAAAGGG 59.054 40.000 3.48 0.00 42.19 3.95
2699 6252 6.655003 TCAGTCTCAGCCTTATTGTTTAAAGG 59.345 38.462 0.00 0.00 44.32 3.11
2700 6253 7.672983 TCAGTCTCAGCCTTATTGTTTAAAG 57.327 36.000 0.00 0.00 0.00 1.85
2701 6254 8.514594 CAATCAGTCTCAGCCTTATTGTTTAAA 58.485 33.333 0.00 0.00 0.00 1.52
2702 6255 7.362056 GCAATCAGTCTCAGCCTTATTGTTTAA 60.362 37.037 0.00 0.00 30.03 1.52
2703 6256 6.094048 GCAATCAGTCTCAGCCTTATTGTTTA 59.906 38.462 0.00 0.00 30.03 2.01
2704 6257 5.105997 GCAATCAGTCTCAGCCTTATTGTTT 60.106 40.000 0.00 0.00 30.03 2.83
2705 6258 4.397417 GCAATCAGTCTCAGCCTTATTGTT 59.603 41.667 0.00 0.00 30.03 2.83
2706 6259 3.944015 GCAATCAGTCTCAGCCTTATTGT 59.056 43.478 0.00 0.00 30.03 2.71
2707 6260 3.943381 TGCAATCAGTCTCAGCCTTATTG 59.057 43.478 0.00 0.00 30.34 1.90
2708 6261 4.226427 TGCAATCAGTCTCAGCCTTATT 57.774 40.909 0.00 0.00 0.00 1.40
2709 6262 3.920231 TGCAATCAGTCTCAGCCTTAT 57.080 42.857 0.00 0.00 0.00 1.73
2710 6263 3.538591 CATGCAATCAGTCTCAGCCTTA 58.461 45.455 0.00 0.00 0.00 2.69
2711 6264 2.366533 CATGCAATCAGTCTCAGCCTT 58.633 47.619 0.00 0.00 0.00 4.35
2712 6265 1.408405 CCATGCAATCAGTCTCAGCCT 60.408 52.381 0.00 0.00 0.00 4.58
2713 6266 1.022735 CCATGCAATCAGTCTCAGCC 58.977 55.000 0.00 0.00 0.00 4.85
2714 6267 2.034104 TCCATGCAATCAGTCTCAGC 57.966 50.000 0.00 0.00 0.00 4.26
2715 6268 4.733815 GCAATTCCATGCAATCAGTCTCAG 60.734 45.833 0.00 0.00 45.70 3.35
2716 6269 3.129813 GCAATTCCATGCAATCAGTCTCA 59.870 43.478 0.00 0.00 45.70 3.27
2717 6270 3.703420 GCAATTCCATGCAATCAGTCTC 58.297 45.455 0.00 0.00 45.70 3.36
2718 6271 3.795623 GCAATTCCATGCAATCAGTCT 57.204 42.857 0.00 0.00 45.70 3.24
2727 6280 4.573950 CCCGCGGCAATTCCATGC 62.574 66.667 22.85 0.00 45.67 4.06
2728 6281 2.709883 AACCCGCGGCAATTCCATG 61.710 57.895 22.85 4.97 34.01 3.66
2729 6282 2.362375 AACCCGCGGCAATTCCAT 60.362 55.556 22.85 0.00 34.01 3.41
2730 6283 3.369400 CAACCCGCGGCAATTCCA 61.369 61.111 22.85 0.00 34.01 3.53
2731 6284 3.051392 CTCAACCCGCGGCAATTCC 62.051 63.158 22.85 0.00 0.00 3.01
2732 6285 2.485122 CTCAACCCGCGGCAATTC 59.515 61.111 22.85 0.00 0.00 2.17
2733 6286 2.472414 TACCTCAACCCGCGGCAATT 62.472 55.000 22.85 10.94 0.00 2.32
2734 6287 2.961893 TACCTCAACCCGCGGCAAT 61.962 57.895 22.85 3.86 0.00 3.56
2735 6288 3.627952 TACCTCAACCCGCGGCAA 61.628 61.111 22.85 2.92 0.00 4.52
2736 6289 4.382320 GTACCTCAACCCGCGGCA 62.382 66.667 22.85 1.33 0.00 5.69
2738 6291 4.807039 CCGTACCTCAACCCGCGG 62.807 72.222 21.04 21.04 0.00 6.46
2741 6294 4.462280 GGGCCGTACCTCAACCCG 62.462 72.222 0.00 0.00 39.10 5.28
2742 6295 2.897762 TTGGGCCGTACCTCAACCC 61.898 63.158 0.00 0.00 41.24 4.11
2743 6296 1.673337 GTTGGGCCGTACCTCAACC 60.673 63.158 8.61 0.00 40.74 3.77
2744 6297 0.535553 TTGTTGGGCCGTACCTCAAC 60.536 55.000 11.95 11.95 43.99 3.18
2745 6298 0.402504 ATTGTTGGGCCGTACCTCAA 59.597 50.000 0.00 0.00 39.10 3.02
2746 6299 0.402504 AATTGTTGGGCCGTACCTCA 59.597 50.000 0.00 0.00 39.10 3.86
2747 6300 1.201414 CAAATTGTTGGGCCGTACCTC 59.799 52.381 0.00 0.00 39.10 3.85
2748 6301 1.253100 CAAATTGTTGGGCCGTACCT 58.747 50.000 0.00 0.00 39.10 3.08
2749 6302 0.389296 GCAAATTGTTGGGCCGTACC 60.389 55.000 0.00 0.00 35.10 3.34
2750 6303 0.315568 TGCAAATTGTTGGGCCGTAC 59.684 50.000 0.00 0.00 35.10 3.67
2751 6304 1.261480 ATGCAAATTGTTGGGCCGTA 58.739 45.000 0.00 0.00 35.10 4.02
2752 6305 0.396060 AATGCAAATTGTTGGGCCGT 59.604 45.000 0.00 0.00 35.10 5.68
2753 6306 1.077915 GAATGCAAATTGTTGGGCCG 58.922 50.000 0.00 0.00 35.10 6.13
2754 6307 2.027837 AGAGAATGCAAATTGTTGGGCC 60.028 45.455 0.00 0.00 35.10 5.80
2755 6308 2.997986 CAGAGAATGCAAATTGTTGGGC 59.002 45.455 0.00 0.00 35.10 5.36
2756 6309 4.524316 TCAGAGAATGCAAATTGTTGGG 57.476 40.909 0.00 0.00 35.10 4.12
2757 6310 5.987347 AGTTTCAGAGAATGCAAATTGTTGG 59.013 36.000 0.00 0.00 35.10 3.77
2758 6311 6.145048 GGAGTTTCAGAGAATGCAAATTGTTG 59.855 38.462 0.00 0.00 37.83 3.33
2759 6312 6.183360 TGGAGTTTCAGAGAATGCAAATTGTT 60.183 34.615 0.00 0.00 0.00 2.83
2760 6313 5.302568 TGGAGTTTCAGAGAATGCAAATTGT 59.697 36.000 0.00 0.00 0.00 2.71
2761 6314 5.775686 TGGAGTTTCAGAGAATGCAAATTG 58.224 37.500 0.00 0.00 0.00 2.32
2762 6315 5.771666 TCTGGAGTTTCAGAGAATGCAAATT 59.228 36.000 0.00 0.00 38.70 1.82
2763 6316 5.319453 TCTGGAGTTTCAGAGAATGCAAAT 58.681 37.500 0.00 0.00 38.70 2.32
2764 6317 4.717877 TCTGGAGTTTCAGAGAATGCAAA 58.282 39.130 0.00 0.00 38.70 3.68
2765 6318 4.356405 TCTGGAGTTTCAGAGAATGCAA 57.644 40.909 0.00 0.00 38.70 4.08
2766 6319 4.321718 CTTCTGGAGTTTCAGAGAATGCA 58.678 43.478 0.00 0.00 43.64 3.96
2767 6320 3.688673 CCTTCTGGAGTTTCAGAGAATGC 59.311 47.826 0.00 0.00 43.64 3.56
2768 6321 5.157940 TCCTTCTGGAGTTTCAGAGAATG 57.842 43.478 0.00 0.00 43.64 2.67
2781 6334 1.229529 GTGGGGTCCTCCTTCTGGA 60.230 63.158 0.00 0.00 40.69 3.86
2782 6335 0.916358 ATGTGGGGTCCTCCTTCTGG 60.916 60.000 0.00 0.00 35.33 3.86
2783 6336 1.486726 GTATGTGGGGTCCTCCTTCTG 59.513 57.143 0.00 0.00 35.33 3.02
2784 6337 1.366435 AGTATGTGGGGTCCTCCTTCT 59.634 52.381 0.00 0.00 35.33 2.85
2785 6338 1.880941 AGTATGTGGGGTCCTCCTTC 58.119 55.000 0.00 0.00 35.33 3.46
2786 6339 2.361085 AAGTATGTGGGGTCCTCCTT 57.639 50.000 0.00 0.00 35.33 3.36
2787 6340 2.361085 AAAGTATGTGGGGTCCTCCT 57.639 50.000 0.00 0.00 35.33 3.69
2788 6341 3.451402 AAAAAGTATGTGGGGTCCTCC 57.549 47.619 0.00 0.00 0.00 4.30
2806 6359 5.410439 GGCCTAACTTCGTCTATGACAAAAA 59.590 40.000 0.00 0.00 32.09 1.94
2807 6360 4.933400 GGCCTAACTTCGTCTATGACAAAA 59.067 41.667 0.00 0.00 32.09 2.44
2808 6361 4.020928 TGGCCTAACTTCGTCTATGACAAA 60.021 41.667 3.32 0.00 32.09 2.83
2809 6362 3.512329 TGGCCTAACTTCGTCTATGACAA 59.488 43.478 3.32 0.00 32.09 3.18
2810 6363 3.093814 TGGCCTAACTTCGTCTATGACA 58.906 45.455 3.32 0.00 32.09 3.58
2811 6364 3.795623 TGGCCTAACTTCGTCTATGAC 57.204 47.619 3.32 0.00 0.00 3.06
2812 6365 3.704566 ACATGGCCTAACTTCGTCTATGA 59.295 43.478 3.32 0.00 0.00 2.15
2813 6366 4.060038 ACATGGCCTAACTTCGTCTATG 57.940 45.455 3.32 0.00 0.00 2.23
2814 6367 4.755266 AACATGGCCTAACTTCGTCTAT 57.245 40.909 3.32 0.00 0.00 1.98
2815 6368 4.250464 CAAACATGGCCTAACTTCGTCTA 58.750 43.478 3.32 0.00 0.00 2.59
2816 6369 3.074412 CAAACATGGCCTAACTTCGTCT 58.926 45.455 3.32 0.00 0.00 4.18
2817 6370 2.161609 CCAAACATGGCCTAACTTCGTC 59.838 50.000 3.32 0.00 0.00 4.20
2818 6371 2.159382 CCAAACATGGCCTAACTTCGT 58.841 47.619 3.32 0.00 0.00 3.85
2819 6372 2.159382 ACCAAACATGGCCTAACTTCG 58.841 47.619 3.32 0.00 0.00 3.79
2820 6373 4.076394 TGTACCAAACATGGCCTAACTTC 58.924 43.478 3.32 0.00 31.43 3.01
2821 6374 4.107127 TGTACCAAACATGGCCTAACTT 57.893 40.909 3.32 0.00 31.43 2.66
2822 6375 3.799432 TGTACCAAACATGGCCTAACT 57.201 42.857 3.32 0.00 31.43 2.24
2823 6376 4.857509 TTTGTACCAAACATGGCCTAAC 57.142 40.909 3.32 0.00 38.10 2.34
2824 6377 5.453480 GGTTTTTGTACCAAACATGGCCTAA 60.453 40.000 3.32 0.00 38.10 2.69
2825 6378 4.039366 GGTTTTTGTACCAAACATGGCCTA 59.961 41.667 3.32 0.00 38.10 3.93
2826 6379 3.181459 GGTTTTTGTACCAAACATGGCCT 60.181 43.478 3.32 0.00 38.10 5.19
2827 6380 3.135225 GGTTTTTGTACCAAACATGGCC 58.865 45.455 15.85 0.00 38.10 5.36
2828 6381 2.797719 CGGTTTTTGTACCAAACATGGC 59.202 45.455 15.85 2.64 38.10 4.40
2829 6382 4.036971 TCTCGGTTTTTGTACCAAACATGG 59.963 41.667 15.85 0.00 38.10 3.66
2830 6383 5.176407 TCTCGGTTTTTGTACCAAACATG 57.824 39.130 15.85 9.83 38.10 3.21
2831 6384 4.261447 GCTCTCGGTTTTTGTACCAAACAT 60.261 41.667 15.85 0.00 38.10 2.71
2832 6385 3.065648 GCTCTCGGTTTTTGTACCAAACA 59.934 43.478 15.85 1.01 38.12 2.83
2833 6386 3.065648 TGCTCTCGGTTTTTGTACCAAAC 59.934 43.478 8.59 8.59 38.12 2.93
2834 6387 3.280295 TGCTCTCGGTTTTTGTACCAAA 58.720 40.909 0.00 0.00 38.12 3.28
2835 6388 2.920524 TGCTCTCGGTTTTTGTACCAA 58.079 42.857 0.00 0.00 38.12 3.67
2836 6389 2.614983 GTTGCTCTCGGTTTTTGTACCA 59.385 45.455 0.00 0.00 38.12 3.25
2837 6390 2.876550 AGTTGCTCTCGGTTTTTGTACC 59.123 45.455 0.00 0.00 34.72 3.34
2838 6391 5.662211 TTAGTTGCTCTCGGTTTTTGTAC 57.338 39.130 0.00 0.00 0.00 2.90
2839 6392 6.870971 AATTAGTTGCTCTCGGTTTTTGTA 57.129 33.333 0.00 0.00 0.00 2.41
2840 6393 5.767816 AATTAGTTGCTCTCGGTTTTTGT 57.232 34.783 0.00 0.00 0.00 2.83
2841 6394 6.302313 CGTTAATTAGTTGCTCTCGGTTTTTG 59.698 38.462 0.00 0.00 0.00 2.44
2842 6395 6.203338 TCGTTAATTAGTTGCTCTCGGTTTTT 59.797 34.615 0.00 0.00 0.00 1.94
2843 6396 5.697633 TCGTTAATTAGTTGCTCTCGGTTTT 59.302 36.000 0.00 0.00 0.00 2.43
2844 6397 5.232463 TCGTTAATTAGTTGCTCTCGGTTT 58.768 37.500 0.00 0.00 0.00 3.27
2880 6433 2.548480 GACGTTGAAAGTAGCAAGGCTT 59.452 45.455 0.00 0.00 40.44 4.35
2889 6442 1.795872 CGCCATGTGACGTTGAAAGTA 59.204 47.619 0.00 0.00 0.00 2.24
2892 6445 1.281353 GCGCCATGTGACGTTGAAA 59.719 52.632 0.00 0.00 0.00 2.69
2893 6446 2.942879 GCGCCATGTGACGTTGAA 59.057 55.556 0.00 0.00 0.00 2.69
3016 6572 1.589803 AACGTCAGAAAAACCCCGAG 58.410 50.000 0.00 0.00 0.00 4.63
3028 6584 2.378507 GGTGAAAACCGAAACGTCAG 57.621 50.000 0.00 0.00 0.00 3.51
3231 6813 3.319755 AGCAAAAATGTGCCTTTCGATG 58.680 40.909 0.00 0.00 46.14 3.84
3232 6814 3.665745 AGCAAAAATGTGCCTTTCGAT 57.334 38.095 0.00 0.00 46.14 3.59
3233 6815 3.380142 GAAGCAAAAATGTGCCTTTCGA 58.620 40.909 0.00 0.00 46.14 3.71
3237 6819 1.686052 TCGGAAGCAAAAATGTGCCTT 59.314 42.857 0.00 0.00 46.14 4.35
3244 6826 2.627699 TGCCTTTCTCGGAAGCAAAAAT 59.372 40.909 0.00 0.00 0.00 1.82
3245 6827 2.028130 TGCCTTTCTCGGAAGCAAAAA 58.972 42.857 0.00 0.00 0.00 1.94
3370 6957 0.460459 TCGTGAAAGCACAACCGTGA 60.460 50.000 0.00 0.00 46.80 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.